Pregenerated sensors for VIM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026728Ensembl transcript IDs: ENSMUST00000028062.8, ENSMUST00000141365.3, ENSMUST00000193675.2
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACCTTCTTGCTGGTACTaGACTGTTGCACCAAGTGTG | + |
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Preference number: 2 (lower is better) Translates to: FLRLLGCQLLSAELLSIPPSCWY*TVAPSV Trigger: CACACTTGGTGCAACAGTGCAGTACCAGCAAGAAGG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATCTATCTTGCGCTCCTaGAAAACTGCAGTAAAGGCA | + |
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Preference number: 2 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSILRS*KTAVKA Trigger: TGCCTTTACTGCAGTTTTTCAGGAGCGCAAGATAGA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| 3UTR-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAATTCCAAATCTATCTTaGGCTCCTGAAAAACTGCAG | + |
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Preference number: 2 (lower is better) Translates to: FLRLLGCQLLSAELLSIPIPNLS*APEKLQ Trigger: CTGCAGTTTTTCAGGAGCGCAAGATAGATTTGGAAT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGCTGGTACTGCACTGTaGCACCAAGTGTGTGCAATT | + |
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Preference number: 3 (lower is better) Translates to: FLRLLGCQLLSAELLSIPAGTAL*HQVCAI Trigger: AATTGCACACACTTGGTGCAACAGTGCAGTACCAGC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTTGGGGCGCAGTGCGCTaGCCAGACTGTAGGTGCGTG | + |
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Preference number: 4 (lower is better) Translates to: AGTALLHQVCAIFIQGHRWGAVR*PDCRCV Trigger: CACGCACCTACAGTCTGGGCAGCGCACTGCGCCCCA...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGCCCTGGCCCTTGAGCTaGTCGAGCTCAGCCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVPWPLS*SSSASR Trigger: CCTGCTGGCTGAGCTCGAGCAGCTCAAGGGCCAGGG...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGTTGTCGTTGGTGAGCTaGTCCACCTGCCGGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVLSLVS*STCRRS Trigger: GCTGCGCCGGCAGGTGGATCAGCTCACCAACGACAA...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAAGTCCACCGAGTCTTaGAGCAGCCGCACGCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPKSTES*SSRTPG Trigger: GCCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGGGCCTTGTCGTTGGTaGGCTGATCCACCTGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPGPCRW*ADPPAG Trigger: GCCGGCAGGTGGATCAGCTCACCAACGACAAGGCCC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATGGGGCGCAGTGCGCTaGCCAGACTGTAGGTGCGTG | + |
|
Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPWGAVR*PDCRCV Trigger: CACGCACCTACAGTCTGGGCAGCGCACTGCGCCCCA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACCCTGGCCCTTGAGCTaGTCGAGCTCAGCCAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPPWPLS*SSSASR Trigger: CCTGCTGGCTGAGCTCGAGCAGCTCAAGGGCCAGGG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAGGCGCGACTTGCCCTaGCCCTTGAGCTGCTCGAGC | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPRRDLP*PLSCSS Trigger: GCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAACTTGCCCTGGCCCTTaGGCTGCTCGAGCTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPTCPGP*AARAQP Trigger: TGGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATTGTCGTTGGTGAGCTaGTCCACCTGCCGGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPLSLVS*STCRRS Trigger: GCTGCGCCGGCAGGTGGATCAGCTCACCAACGACAA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGAGCCACCGAACATCCTaGGGTAGGAGGACGAGGACA | + |
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Preference number: 4 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVSHRTS*GRRTRT Trigger: TGTCCTCGTCCTCCTACCGCAGGATGTTCGGTGGCT...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAGTGCTGGGGCGCAGTaGGCTGCCCAGACTGTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSAGAQ*AAQTVG Trigger: ACCTACAGTCTGGGCAGCGCACTGCGCCCCAGCACT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATCTCTCGCAGCCGCATaGTGTCCTCGGCCAGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSLAAA*CPRPGC Trigger: ACAACCTGGCCGAGGACATCATGCGGCTGCGAGAGA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACACGCAGGGCAGCAGTaGGGTCAGGCTTGGAAACGT | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPHAGQQ*GQAWKR Trigger: ACGTTTCCAAGCCTGACCTCACTGCTGCCCTGCGTG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTTGGAGCATCTCCTCCTaGAATTTCTCTCGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: AGTALLHQVCAIFIQGHRWSISS*NFSRSR Trigger: GCGGCTGCGAGAGAAATTGCAGGAGGAGATGCTCCA...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGAGGCAGAGAAATCCTaGTCTCCTCGCCTTCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: AGTALLHQVCAIFIQGHREAEKS*SPRLPA Trigger: TGCTGGAAGGCGAGGAGAGCAGGATTTCTCTGCCTC...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CCA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGACTGTAGGTGCGTGTaGACGTGGTCACATAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: AGTALLHQVCAIFIQGHRDCRCV*TWSHSS Trigger: GGAGCTATGTGACCACGTCCACACGCACCTACAGTC...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CCA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGCATCGTTGTTCCGGTTaGCAGCCTCAGAGAGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVHRCSG*QPQRGQ Trigger: CTGACCTCTCTGAGGCTGCCAACCGGAACAACGATG...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAGCCACCGAACATCCTaGGGTAGGAGGACGAGGACA | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSHRTS*GRRTRT Trigger: TGTCCTCGTCCTCCTACCGCAGGATGTTCGGTGGCT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGTCCTGTCTGAATGACTaGAGGGTGCTTTCGGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVSCLND*RVLSAS Trigger: GGAAGCCGAAAGCACCCTGCAGTCATTCAGACAGGA...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAGGTGCGTGTGGACGTaGTCACATAGCTCCGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPRCVWT*SHSSGW Trigger: CCAACCGGAGCTATGTGACCACGTCCACACGCACCT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACACTTCACAGGTGAGTaGCTGCACCTGTCTCCGGTA | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPHFTGE*LHLSPV Trigger: TACCGGAGACAGGTGCAGTCACTCACCTGTGAAGTG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACATCCACTTCACAGGTaGGTGACTGCACCTGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPHPLHR*VTAPVS Trigger: GGAGACAGGTGCAGTCACTCACCTGTGAAGTGGATG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGTGGTATTCACGAAGGTaGCGAGCCATCTCTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVWYSRR*RAISSF Trigger: GAAGGAAGAGATGGCTCGTCACCTTCGTGAATACCA...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATGGAGCATCTCCTCCTaGAATTTCTCTCGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPWSISS*NFSRSR Trigger: GCGGCTGCGAGAGAAATTGCAGGAGGAGATGCTCCA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATCACAGGTGAGTGACTaGACCTGTCTCCGGTACTCG | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSQVSD*TCLRYS Trigger: CGAGTACCGGAGACAGGTGCAGTCACTCACCTGTGA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGAGGCAGAGAAATCCTaGTCTCCTCGCCTTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPEAEKS*SPRLPA Trigger: TGCTGGAAGGCGAGGAGAGCAGGATTTCTCTGCCTC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGACTGTAGGTGCGTGTaGACGTGGTCACATAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPDCRCV*TWSHSS Trigger: GGAGCTATGTGACCACGTCCACACGCACCTACAGTC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACATCGTTGTTCCGGTTaGCAGCCTCAGAGAGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPHRCSG*QPQRGQ Trigger: CTGACCTCTCTGAGGCTGCCAACCGGAACAACGATG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGTGTCAACATCCTGTCTaGATGACTGCAGGGTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVCQHPV*MTAGCF Trigger: AAAGCACCCTGCAGTCATTCAGACAGGATGTTGACA...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATCCTGTCTGAATGACTaGAGGGTGCTTTCGGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSCLND*RVLSAS Trigger: GGAAGCCGAAAGCACCCTGCAGTCATTCAGACAGGA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CCA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTTCTTCCTTCATGTTTTaGATCTCATCCTGCAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: AGTALLHQVCAIFIQGHRSSFMF*ISSCRR Trigger: CCGCCTGCAGGATGAGATCCAAAACATGAAGGAAGA...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATGGTATTCACGAAGGTaGCGAGCCATCTCTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPWYSRR*RAISSF Trigger: GAAGGAAGAGATGGCTCGTCACCTTCGTGAATACCA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACAGGAGTGTTCTTTTTaGGTGGGTGTCAACCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPQECSF*VGVNQR Trigger: CCTCTGGTTGACACCCACTCAAAAAGAACACTCCTG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028062.8 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGCTGAGAAGTCTCATTaGTCACCTGTCCATCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPAEKSH*SPVHLW Trigger: CCAGAGATGGACAGGTGATCAATGAGACTTCTCAGC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028062.8 |
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| CDS-3UTR GCA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGTTCAAGGTCAAGACGTaGCAGAGAAGCATTGTCAAC | + |
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Preference number: 4 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVFKVKT*QRSIVN Trigger: GTTGACAATGCTTCTCTGGCACGTCTTGACCTTGAA...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATGTCAACATCCTGTCTaGATGACTGCAGGGTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPCQHPV*MTAGCF Trigger: AAAGCACCCTGCAGTCATTCAGACAGGATGTTGACA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR TCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGTCAACCAGAGGAAGTaGCTCCAGGTTAGTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPVNQRK*LQVSFS Trigger: AGAGAAACTAACCTGGAGTCACTTCCTCTGGTTGAC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028062.8 |
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| CDS-3UTR CCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAGAGGTCAGCAAACTTaGACTTGTACCATTCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPRGQQT*TCTIPR Trigger: CCGAGGAATGGTACAAGTCCAAGTTTGCTGACCTCT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATCTTCCTTCATGTTTTaGATCTCATCCTGCAGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSSFMF*ISSCRR Trigger: CCGCCTGCAGGATGAGATCCAAAACATGAAGGAAGA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR GCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATTCAAGGTCAAGACGTaGCAGAGAAGCATTGTCAAC | + |
|
Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPFKVKT*QRSIVN Trigger: GTTGACAATGCTTCTCTGGCACGTCTTGACCTTGAA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CCA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAGTGTTCTTTTTGAGTaGGTGTCAACCAGAGGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSVLFE*VSTRGS Trigger: ACTTCCTCTGGTTGACACCCACTCAAAAAGAACACT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028062.8 |
||
| CDS TCA 90 bp | CAGGCGCACTGCCGAGGACCGGGTCACATAGGCGCCACCGGGGGATaGGGAATAGAGGCTGCGGCTAGTGCTGGGGCGCAGTGCGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: QAHCRGPGHIGATGG*GIEAAASAGAQCAA Trigger: GGCAGCGCACTGCGCCCCAGCACTAGCCGCAGCCTCTATTCCTCATCCCCCGGTGGCGCCTATGTGACCCGGTCCTCGGCAGTGCGCCTG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS GCA 90 bp | GCGAGAAGTCCACCGAGTCTTGAAGCAGCCGCACGCCCGGCACGCTaGTCCGCAGGCGCACTGCCGAGGACCGGGTCACATAGGCGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: ARSPPSLEAAARPAR*SAGALPRTGSHRRH Trigger: GTGGCGCCTATGTGACCCGGTCCTCGGCAGTGCGCCTGCGGAGCAGCGTGCCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTTCTCGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS CCA 90 bp | TGCTGGGGCGCAGTGCGCTGCCCAGACTGTAGGTGCGTGTGGACGTaGTCACATAGCTCCGGTTGGAGCTGGGCCGGCTCGATGTGCCGG | + |
|
Preference number: 5 (lower is better) Translates to: CWGAVRCPDCRCVWT*SHSSGWSWAGSMCR Trigger: CCGGCACATCGAGCCGGCCCAGCTCCAACCGGAGCTATGTGACCACGTCCACACGCACCTACAGTCTGGGCAGCGCACTGCGCCCCAGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS TCA 90 bp | AACTCAGTGTTGATGGCGTCGGCCAGCGAGAAGTCCACCGAGTCTTaGAGCAGCCGCACGCCCGGCACGCTGCTCCGCAGGCGCACTGCC | + |
|
Preference number: 5 (lower is better) Translates to: NSVLMASASEKSTES*SSRTPGTLLRRRTA Trigger: GGCAGTGCGCCTGCGGAGCAGCGTGCCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAACACTGAGTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS CCA 90 bp | GACTGTAGGTGCGTGTGGACGTGGTCACATAGCTCCGGTTGGAGCTaGGCCGGCTCGATGTGCCGGAGCCACCGAACATCCTGCGGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: DCRCVWTWSHSSGWS*AGSMCRSHRTSCGR Trigger: CCTACCGCAGGATGTTCGGTGGCTCCGGCACATCGAGCCGGCCCAGCTCCAACCGGAGCTATGTGACCACGTCCACACGCACCTACAGTC 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS CCA 90 bp | TGCCCAGACTGTAGGTGCGTGTGGACGTGGTCACATAGCTCCGGTTaGAGCTGGGCCGGCTCGATGTGCCGGAGCCACCGAACATCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: CPDCRCVWTWSHSSG*SWAGSMCRSHRTSC Trigger: GCAGGATGTTCGGTGGCTCCGGCACATCGAGCCGGCCCAGCTCCAACCGGAGCTATGTGACCACGTCCACACGCACCTACAGTCTGGGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
||
| CDS TCA 90 bp | TCTCCTCCTCGTACAGGTCGCCCAGGCGCGACTTGCCCTGGCCCTTaGGCTGCTCGAGCTCAGCCAGCAGGATTTTGTTCTGCTGCTCGA | + |
|
Preference number: 5 (lower is better) Translates to: SPPRTGRPGATCPGP*AARAQPAGFCSAAR Trigger: TCGAGCAGCAGAACAAAATCCTGCTGGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGCGACCTGTACGAGGAGGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGAAGTCCACCGAGTCTaGAAGCAGCCGCACGCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHREVHRV*KQPHAR Trigger: CCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTTC...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGACTTGCCCTGGCCCTaGAGCTGCTCGAGCTCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRDLPWP*SCSSSA Trigger: GGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTC...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATCGCCCAGGCGCGACTaGCCCTGGCCCTTGAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSPRRD*PWPLSC Trigger: GCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGCGA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTATGTCCTCGGCCAGGTaGTCCCGCTCCACCTCGACA | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRMSSAR*SRSTST Trigger: TGTCGAGGTGGAGCGGGACAACCTGGCCGAGGACAT...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGAAGTCCACCGAGTCTaGAAGCAGCCGCACGCCCGG | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPEVHRV*KQPHAR Trigger: CCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTTC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGACTTGCCCTGGCCCTaGAGCTGCTCGAGCTCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPDLPWP*SCSSSA Trigger: GGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAATGTCCTCGGCCAGGTaGTCCCGCTCCACCTCGACA | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPMSSAR*SRSTST Trigger: TGTCGAGGTGGAGCGGGACAACCTGGCCGAGGACAT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGCATCGTTGTTCCGGTaGGCAGCCTCAGAGAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRASLFR*AASERS Trigger: TGACCTCTCTGAGGCTGCCAACCGGAACAACGATGC...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTTTCTTGAACTCAGTGTaGATGGCGTCGGCCAGCGAG | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRFLNSV*MASASE Trigger: CTCGCTGGCCGACGCCATCAACACTGAGTTCAAGAA...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGCAGTGAGGTCAGGCTaGGAAACGTCCACATCGATC | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRAVRSG*ETSTSI Trigger: GATCGATGTGGACGTTTCCAAGCCTGACCTCACTGC...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTTCAGCCAGCAGGATTTaGTTCTGCTGCTCGAGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRSASRI*FCCSRK Trigger: CTTCCTCGAGCAGCAGAACAAAATCCTGCTGGCTGA...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGCCTCCTGGAGGTTCTaGGCAGCCACGCTTTCATAC | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPASWRF*AATLSY Trigger: GTATGAAAGCGTGGCTGCCAAGAACCTCCAGGAGGC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTTCAGCAAACTTGGACTaGTACCATTCCTCGGCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRSANLD*YHSSAS Trigger: GGAGGCCGAGGAATGGTACAAGTCCAAGTTTGCTGA...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGCATCGTTGTTCCGGTaGGCAGCCTCAGAGAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPASLFR*AASERS Trigger: TGACCTCTCTGAGGCTGCCAACCGGAACAACGATGC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATTCTTGAACTCAGTGTaGATGGCGTCGGCCAGCGAG | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPFLNSV*MASASE Trigger: CTCGCTGGCCGACGCCATCAACACTGAGTTCAAGAA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGAGTTCTACCTTCTCGTaGGTGCGGGTGTTCTTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVSSTFS*VRVFLN Trigger: GTTCAAGAACACCCGCACCAACGAGAAGGTAGAACT...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGCAGTGAGGTCAGGCTaGGAAACGTCCACATCGATC | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPAVRSG*ETSTSI Trigger: GATCGATGTGGACGTTTCCAAGCCTGACCTCACTGC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGGAGAGGTCAGCAAACTaGGACTTGTACCATTCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVERSAN*DLYHSS Trigger: CGAGGAATGGTACAAGTCCAAGTTTGCTGACCTCTC...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTCTCTTCCTTCATGTTTaGGATCTCATCCTGCAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRLFLHV*DLILQA Trigger: CGCCTGCAGGATGAGATCCAAAACATGAAGGAAGAG...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATTGGTGCGGGTGTTCTaGAACTCAGTGTTGATGGCG | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPLVRVF*NSVLMA Trigger: CGCCATCAACACTGAGTTCAAGAACACCCGCACCAA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATCAGCCAGCAGGATTTaGTTCTGCTGCTCGAGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSASRI*FCCSRK Trigger: CTTCCTCGAGCAGCAGAACAAAATCCTGCTGGCTGA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | CTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTGCGTGCCAGAGAAGCATaGTCAACATCCTGTCTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: LVLHCCTKCVQFLFKVIVRAREA*STSCLN Trigger: ATTCAGACAGGATGTTGACAATGCTTCTCTGGCACG...CACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCATCAGCAAACTTGGACTaGTACCATTCCTCGGCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSANLD*YHSSAS Trigger: GGAGGCCGAGGAATGGTACAAGTCCAAGTTTGCTGA...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAGTTCTACCTTCTCGTaGGTGCGGGTGTTCTTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPSSTFS*VRVFLN Trigger: GTTCAAGAACACCCGCACCAACGAGAAGGTAGAACT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAGAGAGGTCAGCAAACTaGGACTTGTACCATTCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPERSAN*DLYHSS Trigger: CGAGGAATGGTACAAGTCCAAGTTTGCTGACCTCTC...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACTCTTCCTTCATGTTTaGGATCTCATCCTGCAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPLFLHV*DLILQA Trigger: CGCCTGCAGGATGAGATCCAAAACATGAAGGAAGAG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | GCTGGTACTGCACTGTTGCACCAAGTGTGTGCAATTTTTATTCAAGGTCATCGTAACATTGAGCAGATCTaGGTATTCACGAAGGTGACG | + |
|
Preference number: 5 (lower is better) Translates to: AGTALLHQVCAIFIQGHRNIEQI*VFTKVT Trigger: CGTCACCTTCGTGAATACCAAGATCTGCTCAATGTT...ACGATGACCTTGAATAAAAATTGCACACACTTGGTGCAACAGTGCAGTACCAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCACGTGCCAGAGAAGCATaGTCAACATCCTGTCTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPRAREA*STSCLN Trigger: ATTCAGACAGGATGTTGACAATGCTTCTCTGGCACG...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS-3UTR CAA 90 bp | TTTCTACGTCTTTTGGGGTGTCAGTTGTTAAGTGCTGAGCTTCTTTCTATTCCAAACATTGAGCAGATCTaGGTATTCACGAAGGTGACG | + |
|
Preference number: 5 (lower is better) Translates to: FLRLLGCQLLSAELLSIPNIEQI*VFTKVT Trigger: CGTCACCTTCGTGAATACCAAGATCTGCTCAATGTT...TGGAATAGAAAGAAGCTCAGCACTTAACAACTGACACCCCAAAAGACGTAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
||
| CDS GCA 72 bp | CAGCCGCACGCCCGGCACGCTGCTCCGCAGGCGCACTaGCGAGGACCGGGTCACATAGGCGCCACCGGGGGA | + |
|
Preference number: 6 (lower is better) Translates to: QPHARHAAPQAH*RGPGHIGATGG Trigger: TCCCCCGGTGGCGCCTATGTGACCCGGTCCTCGGCAGTGCGCCTGCGGAGCAGCGTGCCGGGCGTGCGGCTG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
||
| CDS GCA 72 bp | CCACCGAGTCTTGAAGCAGCCGCACGCCCGGCACGCTaGTCCGCAGGCGCACTGCCGAGGACCGGGTCACAT | + |
|
Preference number: 6 (lower is better) Translates to: PPSLEAAARPAR*SAGALPRTGSH Trigger: ATGTGACCCGGTCCTCGGCAGTGCGCCTGCGGAGCAGCGTGCCGGGCGTGCGGCTGCTTCAAGACTCGGTGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
||
| CDS TCA 72 bp | TGCCGAGGACCGGGTCACATAGGCGCCACCGGGGGATaGGGAATAGAGGCTGCGGCTAGTGCTGGGGCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: CRGPGHIGATGG*GIEAAASAGAQ Trigger: CTGCGCCCCAGCACTAGCCGCAGCCTCTATTCCTCATCCCCCGGTGGCGCCTATGTGACCCGGTCCTCGGCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
||
| CDS TCA 72 bp | TTGATGGCGTCGGCCAGCGAGAAGTCCACCGAGTCTTaGAGCAGCCGCACGCCCGGCACGCTGCTCCGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: LMASASEKSTES*SSRTPGTLLRR Trigger: CCTGCGGAGCAGCGTGCCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
||
| CDS CAA 72 bp | GTTGATGGCGTCGGCCAGCGAGAAGTCCACCGAGTCTaGAAGCAGCCGCACGCCCGGCACGCTGCTCCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: VDGVGQREVHRV*KQPHARHAAPQ Trigger: CTGCGGAGCAGCGTGCCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAAC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS CAA 90 bp | GAACTCAGTGTTGATGGCGTCGGCCAGCGAGAAGTCCACCGAGTCTaGAAGCAGCCGCACGCCCGGCACGCTGCTCCGCAGGCGCACTGC | + |
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Preference number: 6 (lower is better) Translates to: ELSVDGVGQREVHRV*KQPHARHAAPQAHC Trigger: GCAGTGCGCCTGCGGAGCAGCGTGCCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAACACTGAGTTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS CCA 72 bp | GCAGTGCGCTGCCCAGACTGTAGGTGCGTGTGGACGTaGTCACATAGCTCCGGTTGGAGCTGGGCCGGCTCG | + |
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Preference number: 6 (lower is better) Translates to: AVRCPDCRCVWT*SHSSGWSWAGS Trigger: CGAGCCGGCCCAGCTCCAACCGGAGCTATGTGACCACGTCCACACGCACCTACAGTCTGGGCAGCGCACTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS CCA 72 bp | TGGGGCGCAGTGCGCTGCCCAGACTGTAGGTGCGTGTaGACGTGGTCACATAGCTCCGGTTGGAGCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: WGAVRCPDCRCV*TWSHSSGWSWA Trigger: GGCCCAGCTCCAACCGGAGCTATGTGACCACGTCCACACGCACCTACAGTCTGGGCAGCGCACTGCGCCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS GCA 72 bp | TCACATAGCTCCGGTTGGAGCTGGGCCGGCTCGATGTaGCGGAGCCACCGAACATCCTGCGGTAGGAGGACG | + |
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Preference number: 6 (lower is better) Translates to: SHSSGWSWAGSM*RSHRTSCGRRT Trigger: CGTCCTCCTACCGCAGGATGTTCGGTGGCTCCGGCACATCGAGCCGGCCCAGCTCCAACCGGAGCTATGTGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028062.8 ENSMUST00000141365.3 ENSMUST00000193675.2 |
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| CDS CCA 72 bp | TCCTCCTCGTACAGGTCGCCCAGGCGCGACTTGCCCTaGCCCTTGAGCTGCTCGAGCTCAGCCAGCAGGATT | + |
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Preference number: 6 (lower is better) Translates to: SSSYRSPRRDLP*PLSCSSSASRI Trigger: AATCCTGCTGGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGCGACCTGTACGAGGAGGA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS GCA 72 bp | AGGTCGCCCAGGCGCGACTTGCCCTGGCCCTTGAGCTaGTCGAGCTCAGCCAGCAGGATTTTGTTCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RSPRRDLPWPLS*SSSASRILFCC Trigger: GCAGCAGAACAAAATCCTGCTGGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGCGACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS CAA 90 bp | ATCTCCTCCTCGTACAGGTCGCCCAGGCGCGACTTGCCCTGGCCCTaGAGCTGCTCGAGCTCAGCCAGCAGGATTTTGTTCTGCTGCTCG | + |
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Preference number: 6 (lower is better) Translates to: ISSSYRSPRRDLPWP*SCSSSASRILFCCS Trigger: CGAGCAGCAGAACAAAATCCTGCTGGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGCGACCTGTACGAGGAGGAGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS TCA 72 bp | CGTACAGGTCGCCCAGGCGCGACTTGCCCTGGCCCTTaGGCTGCTCGAGCTCAGCCAGCAGGATTTTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: RTGRPGATCPGP*AARAQPAGFCS Trigger: AGAACAAAATCCTGCTGGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGCGACCTGTACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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| CDS CAA 72 bp | TCGTACAGGTCGCCCAGGCGCGACTTGCCCTGGCCCTaGAGCTGCTCGAGCTCAGCCAGCAGGATTTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: SYRSPRRDLPWP*SCSSSASRILF Trigger: GAACAAAATCCTGCTGGCTGAGCTCGAGCAGCTCAAGGGCCAGGGCAAGTCGCGCCTGGGCGACCTGTACGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028062.8 ENSMUST00000193675.2 |
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