Pregenerated sensors for VHL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033933Ensembl transcript IDs: ENSMUST00000035673.8, ENSMUST00000204915.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCCTCCACAGGAGGTCTGTCCCAGCGTTTGGGAAGGGCCTTCTCTaGCTTCCCAAGCAAGAGCCCTCTGCTCAAATGAAAGGACACAGT | + |
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Preference number: 1 (lower is better) Translates to: GLHRRSVPAFGKGLL*LPKQEPSAQMKGHS Trigger: ACTGTGTCCTTTCATTTGAGCAGAGGGCTCTTGCTTGGGAAGGCAGAGAAGGCCCTTCCCAAACGCTGGGACAGACCTCCTGTGGAGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CCA 90 bp | TCCAGCTCAGGCCAGGCAGGACTACAGCAGGAGCCCGTCTCAACATaGGAAAAGGAAGAGCAGAGCAGGCTGTGTGCACACATGTGTTCC | + |
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Preference number: 1 (lower is better) Translates to: SSSGQAGLQQEPVST*EKEEQSRLCAHMCS Trigger: GGAACACATGTGTGCACACAGCCTGCTCTGCTCTTCCTTTTCCCATGTTGAGACGGGCTCCTGCTGTAGTCCTGCCTGGCCTGAGCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CCA 90 bp | ATTCCAGACTGCTCTGTGACCCACTGTCTGGAGTCTGTGGCTGAGTaGAGCTTCACTTCCACCTACAAAGCAGAACCAGCGCCTGCCAAA | + |
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Preference number: 1 (lower is better) Translates to: IPDCSVTHCLESVAE*SFTSTYKAEPAPAK Trigger: TTTGGCAGGCGCTGGTTCTGCTTTGTAGGTGGAAGTGAAGCTCCACTCAGCCACAGACTCCAGACAGTGGGTCACAGAGCAGTCTGGAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR TCA 90 bp | CAGTCATCCTTACACTCAACTTCCAGCCTCACCAGGAAGCAAAACTaGAAACGTCTTCCTCCCTCGGGTGAGTGCTCTACAAAGGGCAGA | + |
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Preference number: 1 (lower is better) Translates to: QSSLHSTSSLTRKQN*KRLPPSGECSTKGR Trigger: TCTGCCCTTTGTAGAGCACTCACCCGAGGGAGGAAGACGTTTTCAGTTTTGCTTCCTGGTGAGGCTGGAAGTTGAGTGTAAGGATGACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CCA 90 bp | TTGCTGATCTTAGAGCATCAGTCTGCACTCAAGGAGCCCAGGATTTaGACAAATACTCCCAACAGTCACCCTCAAAGAAGGAGGGTAGCA | + |
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Preference number: 1 (lower is better) Translates to: LLILEHQSALKEPRI*TNTPNSHPQRRRVA Trigger: TGCTACCCTCCTTCTTTGAGGGTGACTGTTGGGAGTATTTGTCCAAATCCTGGGCTCCTTGAGTGCAGACTGATGCTCTAAGATCAGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR TCA 90 bp | AGAGCCCTCTGCTCAAATGAAAGGACACAGTACAACTCCTGCTGCTaGGCTTATTACACAGTCATCCTTACACTCAACTTCCAGCCTCAC | + |
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Preference number: 1 (lower is better) Translates to: RALCSNERTQYNSCC*AYYTVILTLNFQPH Trigger: GTGAGGCTGGAAGTTGAGTGTAAGGATGACTGTGTAATAAGCTCAGCAGCAGGAGTTGTACTGTGTCCTTTCATTTGAGCAGAGGGCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR-3UTR GCA 90 bp | AAGTCTACCCAGCTTAGAAAGCAGCCAGACGGTCGGTCAGGAGGCAGGACCGACGACGCAGTGGCACTTTaGATGTTTATTCTTAAACAC | + |
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Preference number: 2 (lower is better) Translates to: KSTQLRKQPDGRSGGRTDDAVAL*MFILKH Trigger: GTGTTTAAGAATAAACATGCAAAGTGCCACTGCGTC...GTCGGTCCTGCCTCCTGACCGACCGTCTGGCTGCTTTCTAAGCTGGGTAGACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR-3UTR GCA 90 bp | TCACAGGAGAAAAGCCCGAGGAACTCATTACAGGATGTCCCAGGACAAGTGGCTAGCAGAACCAGCGCCTaGCAAAACAAAGTGGAATGC | + |
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Preference number: 2 (lower is better) Translates to: SQEKSPRNSLQDVPGQVASRTSA*QNKVEC Trigger: GCATTCCACTTTGTTTTGGCAGGCGCTGGTTCTGCT...AGCCACTTGTCCTGGGACATCCTGTAATGAGTTCCTCGGGCTTTTCTCCTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR-3UTR CCA 90 bp | CCTGCCAACAGCTTCCTCAGAGACAGGAGCTCTCAAAACCAGACTTACACAAGGCCACCAAGCATCCAATaGTTTCTTCGTCCAACATTC | + |
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Preference number: 2 (lower is better) Translates to: PANSFLRDRSSQNQTYTRPPSIQ*FLRPTF Trigger: GAATGTTGGACGAAGAAACCATTGGATGCTTGGTGG...CCTTGTGTAAGTCTGGTTTTGAGAGCTCCTGTCTCTGAGGAAGCTGTTGGCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CAA 90 bp | AAAAGCAGAGACAGATCTCTCCATGTGAGGCCAGTAATCAGATGTTaGGTCTACAAAGGGAGTTCTAGGACAGCCTGGGCTACAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: KSRDRSLHVRPVIRC*VYKGSSRTAWATEK Trigger: TTTCTCTGTAGCCCAGGCTGTCCTAGAACTCCCTTTGTAGACCAAACATCTGATTACTGGCCTCACATGGAGAGATCTGTCTCTGCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CAA 90 bp | TGCATGAAGCTGAGAGTACATAAGAGCCTTTCTGCTTCCCTTTCCTaGACTGTCCTTTCTGTTGTGTACACAATACCCAGGCTTCTCTAC | + |
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Preference number: 2 (lower is better) Translates to: CMKLRVHKSLSASLS*TVLSVVYTIPRLLY Trigger: GTAGAGAAGCCTGGGTATTGTGTACACAACAGAAAGGACAGTCAAGGAAAGGGAAGCAGAAAGGCTCTTATGTACTCTCAGCTTCATGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR-3UTR TCA 90 bp | CTTCAATCCCAGCGCTGGAAAAGCAGAGACAGATCTCTCCATGTGAGGCCAGTAAAAACTGAAAGAAAGTaGCCTGTCCTATGTGTAGAT | + |
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Preference number: 2 (lower is better) Translates to: LQSQRWKSRDRSLHVRPVKTERK*PVLCVD Trigger: ATCTACACATAGGACAGGTCACTTTCTTTCAGTTTT...TACTGGCCTCACATGGAGAGATCTGTCTCTGCTTTTCCAGCGCTGGGATTGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR-3UTR TCA 90 bp | CTTTCCTTGACTGTCCTTTCTGTTGTGTACACAATACCCAGGCTTCTCTACTTTACCAGGAAGCAAAACTaGAAACGTCTTCCTCCCTCG | + |
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Preference number: 2 (lower is better) Translates to: LSLTVLSVVYTIPRLLYFTRKQN*KRLPPS Trigger: CGAGGGAGGAAGACGTTTTCAGTTTTGCTTCCTGGT...AAAGTAGAGAAGCCTGGGTATTGTGTACACAACAGAAAGGACAGTCAAGGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR-3UTR TCA 90 bp | AGGAACTCATTACAGGATGTCCCAGGACAAGTGGCTCATTTCATAACTCTTCACTCGGACCATCAAGGCTaGAACTCAGGAACACTTAAT | + |
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Preference number: 2 (lower is better) Translates to: RNSLQDVPGQVAHFITLHSDHQG*NSGTLN Trigger: ATTAAGTGTTCCTGAGTTTCAGCCTTGATGGTCCGA...GTGAAGAGTTATGAAATGAGCCACTTGTCCTGGGACATCCTGTAATGAGTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035673.8 ENSMUST00000204915.2 |
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| 3UTR-3UTR CCA 90 bp | TTTCATAACTCTTCACTTGTTGGACAGCACAGAGAACAGTATTCAAACTTCCAGCTCCACACTGGTCTGTaGCCACTTCACTCCTGCAAT | + |
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Preference number: 2 (lower is better) Translates to: FHNSSLVGQHREQYSNFQLHTGL*PLHSCN Trigger: ATTGCAGGAGTGAAGTGGCCACAGACCAGTGTGGAG...CTGGAAGTTTGAATACTGTTCTCTGTGCTGTCCAACAAGTGAAGAGTTATGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGTGGCTCATTTCATAACTCTTCACTTGTTGGACAGCACAGAGAACAGTATTTCGGACCATCAAGGCTaGAACTCAGGAACACTTAAT | + |
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Preference number: 2 (lower is better) Translates to: QVAHFITLHLLDSTENSISDHQG*NSGTLN Trigger: ATTAAGTGTTCCTGAGTTTCAGCCTTGATGGTCCGA...AATACTGTTCTCTGTGCTGTCCAACAAGTGAAGAGTTATGAAATGAGCCACTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035673.8 ENSMUST00000204915.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCATAACTCTTCACTTGTTGGACAGCACAGAGAACAGTATTCAAACTTCCAGTGGAATGCTAGGGGCTaGCAAGAAGGAACAGAAATC | + |
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Preference number: 2 (lower is better) Translates to: FHNSSLVGQHREQYSNFQWNARG*QEGTEI Trigger: GATTTCTGTTCCTTCTTGTCAGCCCCTAGCATTCCA...CTGGAAGTTTGAATACTGTTCTCTGTGCTGTCCAACAAGTGAAGAGTTATGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CCA 72 bp | GGCAGCGGGCCTCCACAGGAGGTCTGTCCCAGCGTTTaGGAAGGGCCTTCTCTGCCTTCCCAAGCAAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: GSGPPQEVCPSV*EGPSLPSQARA Trigger: GGCTCTTGCTTGGGAAGGCAGAGAAGGCCCTTCCCAAACGCTGGGACAGACCTCCTGTGGAGGCCCGCTGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CCA 72 bp | GGCCAGGCAGGACTACAGCAGGAGCCCGTCTCAACATaGGAAAAGGAAGAGCAGAGCAGGCTGTGTGCACAC | + |
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Preference number: 3 (lower is better) Translates to: GQAGLQQEPVST*EKEEQSRLCAH Trigger: GTGTGCACACAGCCTGCTCTGCTCTTCCTTTTCCCATGTTGAGACGGGCTCCTGCTGTAGTCCTGCCTGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR GCA 72 bp | AGGAGGTCTGTCCCAGCGTTTGGGAAGGGCCTTCTCTaGCTTCCCAAGCAAGAGCCCTCTGCTCAAATGAAA | + |
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Preference number: 3 (lower is better) Translates to: RRSVPAFGKGLL*LPKQEPSAQMK Trigger: TTTCATTTGAGCAGAGGGCTCTTGCTTGGGAAGGCAGAGAAGGCCCTTCCCAAACGCTGGGACAGACCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR GCA 72 bp | GAAGGGCCTTCTCTGCCTTCCCAAGCAAGAGCCCTCTaGTCAAATGAAAGGACACAGTACAACTCCTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: EGPSLPSQARAL*SNERTQYNSCC Trigger: GCAGCAGGAGTTGTACTGTGTCCTTTCATTTGAGCAGAGGGCTCTTGCTTGGGAAGGCAGAGAAGGCCCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR TCA 72 bp | CACCAAGCATCCAATGGTTTCTTCGTCCAACATTCATaGCTGAAGACTCCACGCTTTAGGCAGCGGGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: HQASNGFFVQHS*LKTPRFRQRAS Trigger: GGAGGCCCGCTGCCTAAAGCGTGGAGTCTTCAGTCATGAATGTTGGACGAAGAAACCATTGGATGCTTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR TCA 72 bp | AGGAGACATAATCCCAGAGGGTCAGGAATCCTCTGCTaGGTGACTGAGGCTGGCCTGGGCTATACAAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: RRHNPRGSGILC*VTEAGLGYTKV Trigger: GACTTTTGTATAGCCCAGGCCAGCCTCAGTCACTCAGCAGAGGATTCCTGACCCTCTGGGATTATGTCTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR TCA 72 bp | TTACACTCAACTTCCAGCCTCACCAGGAAGCAAAACTaGAAACGTCTTCCTCCCTCGGGTGAGTGCTCTACA | + |
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Preference number: 3 (lower is better) Translates to: LHSTSSLTRKQN*KRLPPSGECST Trigger: TGTAGAGCACTCACCCGAGGGAGGAAGACGTTTTCAGTTTTGCTTCCTGGTGAGGCTGGAAGTTGAGTGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR TCA 72 bp | CGTGGGAAATCAGAAGCTGCTAAGCTGTTCCTTACATaGACACTTAAGGCTCTCCTCAGACAAAGAGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: RGKSEAAKLFLT*TLKALLRQRAR Trigger: CCTGGCTCTTTGTCTGAGGAGAGCCTTAAGTGTTCATGTAAGGAACAGCTTAGCAGCTTCTGATTTCCCACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR GCA 72 bp | CTCAACATGGGAAAAGGAAGAGCAGAGCAGGCTGTGTaGACACATGTGTTCCCAATGTCAGGAGACATAATC | + |
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Preference number: 3 (lower is better) Translates to: LNMGKGRAEQAV*THVFPMSGDII Trigger: GATTATGTCTCCTGACATTGGGAACACATGTGTGCACACAGCCTGCTCTGCTCTTCCTTTTCCCATGTTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CCA 72 bp | TTAGAGCATCAGTCTGCACTCAAGGAGCCCAGGATTTaGACAAATACTCCCAACAGTCACCCTCAAAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: LEHQSALKEPRI*TNTPNSHPQRR Trigger: CCTTCTTTGAGGGTGACTGTTGGGAGTATTTGTCCAAATCCTGGGCTCCTTGAGTGCAGACTGATGCTCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR GCA 72 bp | GTGAGTGCTCTACAAAGGGCAGACGCAGTGGCACTTTaGATGTTTATTCTTAAACACTACAAAGCCCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: VSALQRADAVAL*MFILKHYKAQG Trigger: TCCCTGGGCTTTGTAGTGTTTAAGAATAAACATGCAAAGTGCCACTGCGTCTGCCCTTTGTAGAGCACTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR GCA 72 bp | AAAATATGCCCTACATATGCGGCCAGTTACAGGGGTTaGATGAAGCTGAGAGTACATAAGAGCCTTTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: KICPTYAASYRG*MKLRVHKSLSA Trigger: AGCAGAAAGGCTCTTATGTACTCTCAGCTTCATGCAACCCCTGTAACTGGCCGCATATGTAGGGCATATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CCA 72 bp | AGATGTTTGGTCTACAAAGGGAGTTCTAGGACAGCCTaGGCTACAGAGAAACCCTATCTCAATAAAGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: RCLVYKGSSRTA*ATEKPYLNKAK Trigger: TTTTGCTTTATTGAGATAGGGTTTCTCTGTAGCCCAGGCTGTCCTAGAACTCCCTTTGTAGACCAAACATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CAA 72 bp | AGGCAGCGGGCCTCCACAGGAGGTCTGTCCCAGCGTTaGGGAAGGGCCTTCTCTGCCTTCCCAAGCAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: RQRASTGGLSQR*GRAFSAFPSKS Trigger: GCTCTTGCTTGGGAAGGCAGAGAAGGCCCTTCCCAAACGCTGGGACAGACCTCCTGTGGAGGCCCGCTGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR GCA 90 bp | CACACAGGCCTCCACACTGGTCTGTGGCCACTTCACTCCTGCAATGCTGCAGATCTCGGTAGCTGTGGATaGGGCGGCCGGTGCCCGGTG | + |
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Preference number: 4 (lower is better) Translates to: HTGLHTGLWPLHSCNAADLGSCG*GGRCPV Trigger: CACCGGGCACCGGCCGCCGCATCCACAGCTACCGAG...ATCTGCAGCATTGCAGGAGTGAAGTGGCCACAGACCAGTGTGGAGGCCTGTGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR CCA 90 bp | TCCTTACATGAACACTTAAGGCTCTCCTCAGACAAAGAGCCAGGCCCTCCCAACCCCCGCCGCCTCCTCTaGACTGGCTGCCTTCCGGGG | + |
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Preference number: 4 (lower is better) Translates to: SLHEHLRLSSDKEPGPPNPRRLL*TGCLPG Trigger: CCCCGGAAGGCAGCCAGTCCAGAGGAGGCGGCGGGG...GTTGGGAGGGCCTGGCTCTTTGTCTGAGGAGAGCCTTAAGTGTTCATGTAAGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR TCA 90 bp | CCAGACTGCTCTGTGACCCACTGTCTGGAGTCTGTGGCTGAGTGGAGCTTCACTGCTCGCCGTCGAAGTTaGGCCACAAAGGCAGCACGA | + |
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Preference number: 4 (lower is better) Translates to: PDCSVTHCLESVAEWSFTARRRS*ATKAAR Trigger: TCGTGCTGCCTTTGTGGCTCAACTTCGACGGCGAGC...AGTGAAGCTCCACTCAGCCACAGACTCCAGACAGTGGGTCACAGAGCAGTCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR TCA 90 bp | AGAAAAGCCCGAGGAACTCATTACAGGATGTCCCAGGACAAGTGGCTCATTTCATGTAGTTCTCAGGCTTaGCCAGGCTCCGCACAACCT | + |
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Preference number: 4 (lower is better) Translates to: RKARGTHYRMSQDKWLISCSSQA*PGSAQP Trigger: AGGTTGTGCGGAGCCTGGTCAAGCCTGAGAACTACA...TGAAATGAGCCACTTGTCCTGGGACATCCTGTAATGAGTTCCTCGGGCTTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR TCA 90 bp | CCAGGACAAGTGGCTCATTTCATAACTCTTCACTTGTTGGACAGCACAGAGAACTCCTCTTCCAGGTGCTaGCTCTCAAGGTGCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: PGQVAHFITLHLLDSTENSSSRC*LSRCSW Trigger: CCAAGAGCACCTTGAGAGTCAGCACCTGGAAGAGGA...GTTCTCTGTGCTGTCCAACAAGTGAAGAGTTATGAAATGAGCCACTTGTCCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035673.8 ENSMUST00000204915.2 |
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| CDS-3UTR CCA 90 bp | CCAGACTGCTCTGTGACCCACTGTCTGGAGTCTGTGGCTGAGTGGAGCTTCACTTTTCAGGGTATACACTaGCAATGTGATGTTGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: PDCSVTHCLESVAEWSFTFQGIH*QCDVGK Trigger: TTTGCCAACATCACATTGCCAGTGTATACCCTGAAA...AGTGAAGCTCCACTCAGCCACAGACTCCAGACAGTGGGTCACAGAGCAGTCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR TCA 90 bp | AACTCATTACAGGATGTCCCAGGACAAGTGGCTCATTTCATAACTCTTCACTTGTTGCAGAAGATGACCTaGGAGGGCTCGCGCGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: NSLQDVPGQVAHFITLHLLQKMT*EGSREF Trigger: GAACTCGCGCGAGCCCTCTCAGGTCATCTTCTGCAA...CAAGTGAAGAGTTATGAAATGAGCCACTTGTCCTGGGACATCCTGTAATGAGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR TCA 90 bp | CTTATGACCTCAGCCACAACAAACTGCTTTAACCAATTAAAATATGCCCTACATTGCGGTTGCAGAAGATaGCCTGAGAGGGCTCGCGCG | + |
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Preference number: 4 (lower is better) Translates to: LMTSATTNCFNQLKYALHCGCRR*PERARA Trigger: CGCGCGAGCCCTCTCAGGTCATCTTCTGCAACCGCA...ATGTAGGGCATATTTTAATTGGTTAAAGCAGTTTGTTGTGGCTGAGGTCATAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR TCA 90 bp | TTCATAACTCTTCACTTGTTGGACAGCACAGAGAACAGTATTCAAACTTCCAGCGCTGTCCATCGACATTaGGGGATGGCACAAACAGCT | + |
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Preference number: 4 (lower is better) Translates to: FITLHLLDSTENSIQTSSAVHRH*GMAQTA Trigger: AGCTGTTTGTGCCATCCCTCAATGTCGATGGACAGC...GCTGGAAGTTTGAATACTGTTCTCTGTGCTGTCCAACAAGTGAAGAGTTATGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CAA 72 bp | GGACACTGGGAAGTGTTAGGATGTAGTTCAGTCATTTaGCTGATCTTAGAGCATCAGTCTGCACTCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GHWEVLGCSSVI*LILEHQSALKE Trigger: CTCCTTGAGTGCAGACTGATGCTCTAAGATCAGCAAAATGACTGAACTACATCCTAACACTTCCCAGTGTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR TCA 90 bp | CTTATGACCTCAGCCACAACAAACTGCTTTAACCAATTAAAATATGCCCTACATTCCTCTTCCAGGTGCTaGCTCTCAAGGTGCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: LMTSATTNCFNQLKYALHSSSRC*LSRCSW Trigger: CCAAGAGCACCTTGAGAGTCAGCACCTGGAAGAGGA...ATGTAGGGCATATTTTAATTGGTTAAAGCAGTTTGTTGTGGCTGAGGTCATAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| 3UTR CAA 72 bp | CCAGGACAAGTGGCTCATTTCATAACTCTTCACTTGTaGGACAGCACAGAGAACAGTATTCAAACTTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PGQVAHFITLHL*DSTENSIQTSS Trigger: GCTGGAAGTTTGAATACTGTTCTCTGTGCTGTCCAACAAGTGAAGAGTTATGAAATGAGCCACTTGTCCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035673.8 ENSMUST00000204915.2 |
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| 3UTR CAA 72 bp | GTCCCAGGACAAGTGGCTCATTTCATAACTCTTCACTaGTTGGACAGCACAGAGAACAGTATTCAAACTTCC | + |
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Preference number: 4 (lower is better) Translates to: VPGQVAHFITLH*LDSTENSIQTS Trigger: GGAAGTTTGAATACTGTTCTCTGTGCTGTCCAACAAGTGAAGAGTTATGAAATGAGCCACTTGTCCTGGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035673.8 ENSMUST00000204915.2 |
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| CDS-3UTR CAA 90 bp | ACAGGATGTCCCAGGACAAGTGGCTCATTTCATAACTCTTCACTTGTTGGACAGGGCTCGCCGTCGAAGTaGAGCCACAAAGGCAGCACG | + |
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Preference number: 5 (lower is better) Translates to: TGCPRTSGSFHNSSLVGQGSPSK*SHKGST Trigger: CGTGCTGCCTTTGTGGCTCAACTTCGACGGCGAGCC...CTGTCCAACAAGTGAAGAGTTATGAAATGAGCCACTTGTCCTGGGACATCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS-3UTR CAA 90 bp | AGAAAAGCCCGAGGAACTCATTACAGGATGTCCCAGGACAAGTGGCTCATTTCAACTGGCAATGTGATGTaGGCAAAAATAGGCTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: RKARGTHYRMSQDKWLISTGNVM*AKIGCP Trigger: TGGACAGCCTATTTTTGCCAACATCACATTGCCAGT...TGAAATGAGCCACTTGTCCTGGGACATCCTGTAATGAGTTCCTCGGGCTTTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS GCA 72 bp | AAAGATGACCTCGGTAGCTGTGGATGCGGCGGCCGGTaGCCGGTGGTAAGATCGGGTAGGGCTGAGGCTCGC | + |
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Preference number: 6 (lower is better) Translates to: KDDLGSCGCGGR*PVVRSGRAEAR Trigger: GCGAGCCTCAGCCCTACCCGATCTTACCACCGGGCACCGGCCGCCGCATCCACAGCTACCGAGGTCATCTTT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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| CDS CAA 72 bp | AGGCTCCTCTTCCAGGTGCTGACTCTCAAGGTGCTCTaGGCTCAGTCGCTGTATGTCCTTCCGCACACTTGG | + |
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Preference number: 6 (lower is better) Translates to: RLLFQVLTLKVL*AQSLYVLPHTW Trigger: CCAAGTGTGCGGAAGGACATACAGCGACTGAGCCAAGAGCACCTTGAGAGTCAGCACCTGGAAGAGGAGCCT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035673.8 |
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