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Pregenerated sensors for VGLL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049641

Ensembl transcript IDs: ENSMUST00000163017.10

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TGTCTGACCACATCACCATTCATCCTAGCCACACACCGTAAAGGCTCAGTAGTCAGACCGAGGGCAGGGTaGTACTTCCTAAAGACATCT +
Preference number: 2 (lower is better)
Translates to: CLTTSPFILATHRKGSVVRPRAG*YFLKTS
Trigger: AGATGTCTTTAGGAAGTAGCACCCTGCCCTCGGTCT...GACTACTGAGCCTTTACGGTGTGTGGCTAGGATGAATGGTGATGTGGTCAGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
3UTR-3UTR CCA 90 bp ACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTGGGGGTAGAGGGAGGTaGTCTCCCAAGGGAAGTGTG +
Preference number: 2 (lower is better)
Translates to: TTIFLFSAELYSKNKKSPGGRGR*SPKGSV
Trigger: CACACTTCCCTTGGGAGACCACCTCCCTCTACCCCC...AGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
3UTR-3UTR CCA 90 bp TTCTTTTTCTGTTTTGGAAATCCAGTGTGTATTATGTCTGACCACATCACCATTTCAGCCACATGGTCCTaGGGGGTAGAGGGAGGTGGT +
Preference number: 2 (lower is better)
Translates to: FFFCFGNPVCIMSDHITISATWS*GVEGGG
Trigger: ACCACCTCCCTCTACCCCCCAGGACCATGTGGCTGA...AATGGTGATGTGGTCAGACATAATACACACTGGATTTCCAAAACAGAAAAAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
3UTR-3UTR TCA 90 bp CTCAGACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAACCCGTAGAAACAAATaGTGGCATGCAATCTCTCAG +
Preference number: 2 (lower is better)
Translates to: LRLPSFSFRLNFIQRTKRTRRNK*WHAISQ
Trigger: CTGAGAGATTGCATGCCATCATTTGTTTCTACGGGT...TCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGTCTGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
3UTR-3UTR GCA 90 bp CTCAGACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAAAACAAATGATGGCATaGAATCTCTCAGCCACATGG +
Preference number: 2 (lower is better)
Translates to: LRLPSFSFRLNFIQRTKRKQMMA*NLSATW
Trigger: CCATGTGGCTGAGAGATTGCATGCCATCATTTGTTT...TCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGTCTGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
3UTR GCA 72 bp AGTCCTCTGTACCACCCAGCCAGACCGAGGGCAGGGTaGTACTTCCTAAAGACATCTACCCGTAGAAACAAA +
Preference number: 3 (lower is better)
Translates to: SPLYHPARPRAG*YFLKTSTRRNK
Trigger: TTTGTTTCTACGGGTAGATGTCTTTAGGAAGTAGCACCCTGCCCTCGGTCTGGCTGGGTGGTACAGAGGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
3UTR TCA 72 bp TTGACCAGCTCAGACTACCATCTTTCTCTTTTCGGCTaGACTTTATTCAAAGAACAAAAAGAGTCCTCTGTA +
Preference number: 3 (lower is better)
Translates to: LTSSDYHLSLFG*TLFKEQKESSV
Trigger: TACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGTCTGAGCTGGTCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR GCA 90 bp TGTCTGACCACATCACCATTCATCCTAGCCACACACCGTAAAGGCTCAGTAGTCCAGAGTCGGGTACAGTaGCGGAGGGGCAGAGGGGAG +
Preference number: 4 (lower is better)
Translates to: CLTTSPFILATHRKGSVVQSRVQ*RRGRGE
Trigger: CTCCCCTCTGCCCCTCCGGCACTGTACCCGACTCTG...GACTACTGAGCCTTTACGGTGTGTGGCTAGGATGAATGGTGATGTGGTCAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp TCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACCCAGCCAGACAGTCGGCCGCGCCCTaGTGCAGGTGGCCGTGCAGA +
Preference number: 4 (lower is better)
Translates to: SAELYSKNKKSPLYHPARQSAAP*CRWPCR
Trigger: TCTGCACGGCCACCTGCACCAGGGCGCGGCCGACTG...TCTGGCTGGGTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR GCA 90 bp TGTCTGACCACATCACCATTCATCCTAGCCACACACCGTAAAGGCTCAGTAGTCGGCTCATCGGGAAGGTaGCTTCTGCTCTCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: CLTTSPFILATHRKGSVVGSSGR*LLLSRV
Trigger: GACCCTGGAGAGCAGAAGGCACCTTCCCGATGAGCC...GACTACTGAGCCTTTACGGTGTGTGGCTAGGATGAATGGTGATGTGGTCAGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR GCA 90 bp TCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACCCAGCCAGAGTAGGCAGAGGCTTGTaGTCCCAGGGCGCCGCCCAG +
Preference number: 4 (lower is better)
Translates to: SAELYSKNKKSPLYHPARVGRGL*SQGAAQ
Trigger: CTGGGCGGCGCCCTGGGAGCACAAGCCTCTGCCTAC...TCTGGCTGGGTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR GCA 90 bp TCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACCCAGCCAGAAGGAGGCGGGGAAGCTaGGCTGGCTCATCGGGAAGG +
Preference number: 4 (lower is better)
Translates to: SAELYSKNKKSPLYHPARRRRGS*AGSSGR
Trigger: CCTTCCCGATGAGCCAGCGCAGCTTCCCCGCCTCCT...TCTGGCTGGGTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp TCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACCCAGCCAGAGCGGGGAAGCTGCGCTaGCTCATCGGGAAGGTGCCT +
Preference number: 4 (lower is better)
Translates to: SAELYSKNKKSPLYHPARAGKLR*LIGKVP
Trigger: AGGCACCTTCCCGATGAGCCAGCGCAGCTTCCCCGC...TCTGGCTGGGTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR TCA 90 bp TCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACCCAGCCAGACCTCCTCCGCTTACCTaGGTCCACGCTGAGACCCAG +
Preference number: 4 (lower is better)
Translates to: SAELYSKNKKSPLYHPARPPPLT*VHAETQ
Trigger: CTGGGTCTCAGCGTGGACTCAGGTAAGCGGAGGAGG...TCTGGCTGGGTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR TCA 90 bp TTCTTTTTCTGTTTTGGAAATCCAGTGTGTATTATGTCTGACCACATCACCATTCAGTGGCCGCGGGCATaGGCAGCGGCCCATAGCGCG +
Preference number: 4 (lower is better)
Translates to: FFFCFGNPVCIMSDHITIQWPRA*AAAHSA
Trigger: CGCGCTATGGGCCGCTGCTCATGCCCGCGGCCACTG...AATGGTGATGTGGTCAGACATAATACACACTGGATTTCCAAAACAGAAAAAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR GCA 90 bp TGTCTGACCACATCACCATTCATCCTAGCCACACACCGTAAAGGCTCAGTAGTCAGCTTCTGTGTGCTTTaGTGCTGGTACAGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: CLTTSPFILATHRKGSVVSFCVL*CWYSLG
Trigger: CCCCAAGCTGTACCAGCAGCAAAGCACACAGAAGCT...GACTACTGAGCCTTTACGGTGTGTGGCTAGGATGAATGGTGATGTGGTCAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp ACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGGCGCCCTGGTGCAGGTaGCCGTGCAGAGTGGCGGGA +
Preference number: 4 (lower is better)
Translates to: TIFLFSAELYSKNKKSPLAPWCR*PCRVAG
Trigger: TCCCGCCACTCTGCACGGCCACCTGCACCAGGGCGC...CAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp ACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTTGGTGCGGGTGCGCGTaGTGCGGGTGCGCGTGGTGC +
Preference number: 4 (lower is better)
Translates to: TTIFLFSAELYSKNKKSPWCGCA*CGCAWC
Trigger: GCACCACGCGCACCCGCACCACGCGCACCCGCACCA...AGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR GCA 90 bp TTCTTTTTCTGTTTTGGAAATCCAGTGTGTATTATGTCTGACCACATCACCATTGGGCAGCTCCGAGTGTaGGGCGGCCAGAGGACTGCC +
Preference number: 4 (lower is better)
Translates to: FFFCFGNPVCIMSDHITIGQLRV*GGQRTA
Trigger: GGCAGTCCTCTGGCCGCCGCACACTCGGAGCTGCCC...AATGGTGATGTGGTCAGACATAATACACACTGGATTTCCAAAACAGAAAAAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp TTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACGGTGGCCGTGCAGAGTaGCGGGAGAGTAGGGGTCGG +
Preference number: 4 (lower is better)
Translates to: FLFSAELYSKNKKSPLYHGGRAE*RESRGR
Trigger: CCGACCCCTACTCTCCCGCCACTCTGCACGGCCACC...GTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp TTCTTTTTCTGTTTTGGAAATCCAGTGTGTATTATGTCTGACCACATCACCATTGGGCCACATCCCCCGTaGGGCTCACGAAGGGTCCCC +
Preference number: 4 (lower is better)
Translates to: FFFCFGNPVCIMSDHITIGPHPP*GSRRVP
Trigger: GGGGACCCTTCGTGAGCCCCACGGGGGATGTGGCCC...AATGGTGATGTGGTCAGACATAATACACACTGGATTTCCAAAACAGAAAAAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp ACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGATGAGGAGCTCCCGCTaGCACTGCTGCCAGGGCTGG +
Preference number: 4 (lower is better)
Translates to: TIFLFSAELYSKNKKSPLMRSSR*HCCQGW
Trigger: CCAGCCCTGGCAGCAGTGCCAGCGGGAGCTCCTCAT...CAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp CTCAGACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGACTGAGACCCAGGCTCTaGGCCACATCCCCCGTGGGG +
Preference number: 4 (lower is better)
Translates to: LRLPSFSFRLNFIQRTKRLRPRL*ATSPVG
Trigger: CCCCACGGGGGATGTGGCCCAGAGCCTGGGTCTCAG...TCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGTCTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR TCA 90 bp TTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACTGCCCTCCTCTTCCTTaGCACTGGCTGGGGTTGGGT +
Preference number: 4 (lower is better)
Translates to: FLFSAELYSKNKKSPLYHCPPLP*HWLGLG
Trigger: ACCCAACCCCAGCCAGTGTCAAGGAAGAGGAGGGCA...GTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR GCA 90 bp ACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTGGGAGTGTAGGCGGCTaGGAAATAAGGCTGCGGGGG +
Preference number: 4 (lower is better)
Translates to: TTIFLFSAELYSKNKKSPGSVGG*EIRLRG
Trigger: CCCCCGCAGCCTTATTTCGCAGCCGCCTACACTCCC...AGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp ACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTGAGAGTAGGGGTCGGTaGCAAAGGGCAGCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: TTIFLFSAELYSKNKKSPESRGR*QRAAPS
Trigger: ACTCGGAGCTGCCCTTTGCCACCGACCCCTACTCTC...AGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp ACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTGCTGCTGGTACAGCTTaGGGTGTAGCTGCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: TTIFLFSAELYSKNKKSPAAGTA*GVAAWV
Trigger: CACCCAAGCAGCTACACCCCAAGCTGTACCAGCAGC...AGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR TCA 90 bp CTCAGACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGACCCCCTGGAAGTAGGTaGAGAGGACACATCTGGAGT +
Preference number: 4 (lower is better)
Translates to: LRLPSFSFRLNFIQRTKRPPGSR*RGHIWS
Trigger: ACTCCAGATGTGTCCTCTTCACCTACTTCCAGGGGG...TCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGTCTGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CCA 90 bp ACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTGTGTGCTTTGCTGCTaGTACAGCTTGGGGTGTAGC +
Preference number: 4 (lower is better)
Translates to: TIFLFSAELYSKNKKSPLCVLCC*YSLGCS
Trigger: GCTACACCCCAAGCTGTACCAGCAGCAAAGCACACA...CAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR GCA 90 bp TTCTTTTTCTGTTTTGGAAATCCAGTGTGTATTATGTCTGACCACATCACCATTTTCTGTGTGCTTTGCTaGTGGTACAGCTTGGGGTGT +
Preference number: 4 (lower is better)
Translates to: FFFCFGNPVCIMSDHITIFCVLC*WYSLGC
Trigger: ACACCCCAAGCTGTACCAGCAGCAAAGCACACAGAA...AATGGTGATGTGGTCAGACATAATACACACTGGATTTCCAAAACAGAAAAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 90 bp CGGCCCATAGCGCGGGTCGAAGTGGGGCGCGTAGACCTCGTGCACTaGTGGCCGCGGGTAGGCAGAGGCTTGTGCTCCCAGGGCGCCGCC +
Preference number: 5 (lower is better)
Translates to: RPIARVEVGRVDLVH*WPRVGRGLCSQGAA
Trigger: GGCGGCGCCCTGGGAGCACAAGCCTCTGCCTACCCGCGGCCAGCAGTGCACGAGGTCTACGCGCCCCACTTCGACCCGCGCTATGGGCCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 90 bp CGCGTAGACCTCGTGCACTGCTGGCCGCGGGTAGGCAGAGGCTTGTaGTCCCAGGGCGCCGCCCAGCGCATAGGGATGGTGCGGGTGCGC +
Preference number: 5 (lower is better)
Translates to: RVDLVHCWPRVGRGL*SQGAAQRIGMVRVR
Trigger: GCGCACCCGCACCATCCCTATGCGCTGGGCGGCGCCCTGGGAGCACAAGCCTCTGCCTACCCGCGGCCAGCAGTGCACGAGGTCTACGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 90 bp CCCATAGCGCGGGTCGAAGTGGGGCGCGTAGACCTCGTGCACTGCTaGCCGCGGGTAGGCAGAGGCTTGTGCTCCCAGGGCGCCGCCCAG +
Preference number: 5 (lower is better)
Translates to: PIARVEVGRVDLVHC*PRVGRGLCSQGAAQ
Trigger: CTGGGCGGCGCCCTGGGAGCACAAGCCTCTGCCTACCCGCGGCCAGCAGTGCACGAGGTCTACGCGCCCCACTTCGACCCGCGCTATGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 90 bp TGTGCGGCGGCCAGAGGACTGCCTAGTGGCGCGGGCACAGGCGCCTaGTACGCGCTGTTCCAGAAGGAGGCGGGGAAGCTGCGCTGGCTC +
Preference number: 5 (lower is better)
Translates to: CAAARGLPSGAGTGA*YALFQKEAGKLRWL
Trigger: GAGCCAGCGCAGCTTCCCCGCCTCCTTCTGGAACAGCGCGTACCAGGCGCCTGTGCCCGCGCCACTAGGCAGTCCTCTGGCCGCCGCACA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 90 bp CGTGGTGCCAGTCGGCCGCGCCCTGGTGCAGGTGGCCGTGCAGAGTaGCGGGAGAGTAGGGGTCGGTGGCAAAGGGCAGCTCCGAGTGTG +
Preference number: 5 (lower is better)
Translates to: RGASRPRPGAGGRAE*RESRGRWQRAAPSV
Trigger: CACACTCGGAGCTGCCCTTTGCCACCGACCCCTACTCTCCCGCCACTCTGCACGGCCACCTGCACCAGGGCGCGGCCGACTGGCACCACG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 90 bp GGCGCCTGGTACGCGCTGTTCCAGAAGGAGGCGGGGAAGCTGCGCTaGCTCATCGGGAAGGTGCCTTCTGCTCTCCAGGGTCCAGAGCTT +
Preference number: 5 (lower is better)
Translates to: GAWYALFQKEAGKLR*LIGKVPSALQGPEL
Trigger: AAGCTCTGGACCCTGGAGAGCAGAAGGCACCTTCCCGATGAGCCAGCGCAGCTTCCCCGCCTCCTTCTGGAACAGCGCGTACCAGGCGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 90 bp GCTTCTGTGTGCTTTGCTGCTGGTACAGCTTGGGGTGTAGCTGCTTaGGTGGCTAAGGGCCCTACTGAAATGTTCGTCCACCACAGAGCT +
Preference number: 5 (lower is better)
Translates to: ASVCFAAGTAWGVAA*VAKGPTEMFVHHRA
Trigger: AGCTCTGTGGTGGACGAACATTTCAGTAGGGCCCTTAGCCACCCAAGCAGCTACACCCCAAGCTGTACCAGCAGCAAAGCACACAGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 90 bp TCTCCAGGGTCCAGAGCTTCTGTGTGCTTTGCTGCTGGTACAGCTTaGGGTGTAGCTGCTTGGGTGGCTAAGGGCCCTACTGAAATGTTC +
Preference number: 5 (lower is better)
Translates to: SPGSRASVCFAAGTA*GVAAWVAKGPTEMF
Trigger: GAACATTTCAGTAGGGCCCTTAGCCACCCAAGCAGCTACACCCCAAGCTGTACCAGCAGCAAAGCACACAGAAGCTCTGGACCCTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 90 bp TTGGGTTGGAAAATGAGGAGCTCCCGCTGGCACTGCTGCCAGGGCTaGCGCACTCTTGAGCTTCCTGCATTTTTGAGTAGTAGGCTAGTT +
Preference number: 5 (lower is better)
Translates to: LGWKMRSSRWHCCQG*RTLELPAFLSSRLV
Trigger: AACTAGCCTACTACTCAAAAATGCAGGAAGCTCAAGAGTGCGCCAGCCCTGGCAGCAGTGCCAGCGGGAGCTCCTCATTTTCCAACCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CAA 90 bp TTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACCTGCCCTCCTCTTCCTaGACACTGGCTGGGGTTGGG +
Preference number: 5 (lower is better)
Translates to: FLFSAELYSKNKKSPLYHLPSSS*TLAGVG
Trigger: CCCAACCCCAGCCAGTGTCAAGGAAGAGGAGGGCAG...GTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CAA 90 bp TTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGTACCACCTGGCTGGGGTTGGGTaGGAAAATGAGGAGCTCCCG +
Preference number: 5 (lower is better)
Translates to: FLFSAELYSKNKKSPLYHLAGVG*ENEELP
Trigger: CGGGAGCTCCTCATTTTCCAACCCAACCCCAGCCAG...GTGGTACAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CAA 90 bp ACTACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTTGCTGCTGGTACAGCTaGGGGTGTAGCTGCTTGGGT +
Preference number: 5 (lower is better)
Translates to: TTIFLFSAELYSKNKKSPCCWYS*GCSCLG
Trigger: ACCCAAGCAGCTACACCCCAAGCTGTACCAGCAGCA...AGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CAA 90 bp ACCATCTTTCTCTTTTCGGCTGAACTTTATTCAAAGAACAAAAAGAGTCCTCTGGAGCTTCTGTGTGCTTaGCTGCTGGTACAGCTTGGG +
Preference number: 5 (lower is better)
Translates to: TIFLFSAELYSKNKKSPLELLCA*LLVQLG
Trigger: CCCAAGCTGTACCAGCAGCAAAGCACACAGAAGCTC...CAGAGGACTCTTTTTGTTCTTTGAATAAAGTTCAGCCGAAAAGAGAAAGATGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS-3UTR CAA 90 bp TTCTTTTTCTGTTTTGGAAATCCAGTGTGTATTATGTCTGACCACATCACCATTGAGCTTCCTGCATTTTaGAGTAGTAGGCTAGTTTCT +
Preference number: 5 (lower is better)
Translates to: FFFCFGNPVCIMSDHITIELPAF*SSRLVS
Trigger: AGAAACTAGCCTACTACTCAAAAATGCAGGAAGCTC...AATGGTGATGTGGTCAGACATAATACACACTGGATTTCCAAAACAGAAAAAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CAA 90 bp AAGGGTCCCCCGGGCGCAGCCCATGCGCTGCCCGCCGGCTCGCCCTaGGCCGCAAGCTCGCAGGGAGGGCTGCCGGGAGCCGGCGCCGAG +
Preference number: 6 (lower is better)
Translates to: KGPPGAAHALPAGSP*AASSQGGLPGAGAE
Trigger: CTCGGCGCCGGCTCCCGGCAGCCCTCCCTGCGAGCTTGCGGCCAAGGGCGAGCCGGCGGGCAGCGCATGGGCTGCGCCCGGGGGACCCTT
80% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp GGCTCACGAAGGGTCCCCCGGGCGCAGCCCATGCGCTaGCCGCCGGCTCGCCCTTGGCCGCAAGCTCGCAGG +
Preference number: 6 (lower is better)
Translates to: GSRRVPRAQPMR*PPARPWPQARR
Trigger: CCTGCGAGCTTGCGGCCAAGGGCGAGCCGGCGGGCAGCGCATGGGCTGCGCCCGGGGGACCCTTCGTGAGCC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp CGTGGGGCTCACGAAGGGTCCCCCGGGCGCAGCCCATaGGCTGCCCGCCGGCTCGCCCTTGGCCGCAAGCTC +
Preference number: 6 (lower is better)
Translates to: RGAHEGSPGRSP*AARRLALGRKL
Trigger: GAGCTTGCGGCCAAGGGCGAGCCGGCGGGCAGCGCATGGGCTGCGCCCGGGGGACCCTTCGTGAGCCCCACG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CAA 90 bp GGGCGCGTAGACCTCGTGCACTGCTGGCCGCGGGTAGGCAGAGGCTaGTGCTCCCAGGGCGCCGCCCAGCGCATAGGGATGGTGCGGGTG +
Preference number: 6 (lower is better)
Translates to: GRVDLVHCWPRVGRG*CSQGAAQRIGMVRV
Trigger: CACCCGCACCATCCCTATGCGCTGGGCGGCGCCCTGGGAGCACAAGCCTCTGCCTACCCGCGGCCAGCAGTGCACGAGGTCTACGCGCCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp CAAAGGGCAGCTCCGAGTGTGCGGCGGCCAGAGGACTaGCTAGTGGCGCGGGCACAGGCGCCTGGTACGCGC +
Preference number: 6 (lower is better)
Translates to: QRAAPSVRRPED*LVARAQAPGTR
Trigger: GCGCGTACCAGGCGCCTGTGCCCGCGCCACTAGGCAGTCCTCTGGCCGCCGCACACTCGGAGCTGCCCTTTG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp CTCGTGCACTGCTGGCCGCGGGTAGGCAGAGGCTTGTaGTCCCAGGGCGCCGCCCAGCGCATAGGGATGGTG +
Preference number: 6 (lower is better)
Translates to: LVHCWPRVGRGL*SQGAAQRIGMV
Trigger: CACCATCCCTATGCGCTGGGCGGCGCCCTGGGAGCACAAGCCTCTGCCTACCCGCGGCCAGCAGTGCACGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp GCGCGGGTCGAAGTGGGGCGCGTAGACCTCGTGCACTaGTGGCCGCGGGTAGGCAGAGGCTTGTGCTCCCAG +
Preference number: 6 (lower is better)
Translates to: ARVEVGRVDLVH*WPRVGRGLCSQ
Trigger: CTGGGAGCACAAGCCTCTGCCTACCCGCGGCCAGCAGTGCACGAGGTCTACGCGCCCCACTTCGACCCGCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 72 bp AGTCGGCCGCGCCCTGGTGCAGGTGGCCGTGCAGAGTaGCGGGAGAGTAGGGGTCGGTGGCAAAGGGCAGCT +
Preference number: 6 (lower is better)
Translates to: SRPRPGAGGRAE*RESRGRWQRAA
Trigger: AGCTGCCCTTTGCCACCGACCCCTACTCTCCCGCCACTCTGCACGGCCACCTGCACCAGGGCGCGGCCGACT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 72 bp CGGGTCGAAGTGGGGCGCGTAGACCTCGTGCACTGCTaGCCGCGGGTAGGCAGAGGCTTGTGCTCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: RVEVGRVDLVHC*PRVGRGLCSQG
Trigger: GCCCTGGGAGCACAAGCCTCTGCCTACCCGCGGCCAGCAGTGCACGAGGTCTACGCGCCCCACTTCGACCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CAA 72 bp GACCTCGTGCACTGCTGGCCGCGGGTAGGCAGAGGCTaGTGCTCCCAGGGCGCCGCCCAGCGCATAGGGATG +
Preference number: 6 (lower is better)
Translates to: DLVHCWPRVGRG*CSQGAAQRIGM
Trigger: CATCCCTATGCGCTGGGCGGCGCCCTGGGAGCACAAGCCTCTGCCTACCCGCGGCCAGCAGTGCACGAGGTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 72 bp GCCAGAGGACTGCCTAGTGGCGCGGGCACAGGCGCCTaGTACGCGCTGTTCCAGAAGGAGGCGGGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: ARGLPSGAGTGA*YALFQKEAGKL
Trigger: CAGCTTCCCCGCCTCCTTCTGGAACAGCGCGTACCAGGCGCCTGTGCCCGCGCCACTAGGCAGTCCTCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 72 bp CTCCGCTTACCTGAGTCCACGCTGAGACCCAGGCTCTaGGCCACATCCCCCGTGGGGCTCACGAAGGGTCCC +
Preference number: 6 (lower is better)
Translates to: LRLPESTLRPRL*ATSPVGLTKGP
Trigger: GGGACCCTTCGTGAGCCCCACGGGGGATGTGGCCCAGAGCCTGGGTCTCAGCGTGGACTCAGGTAAGCGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp GGGTTGGGTTGGAAAATGAGGAGCTCCCGCTGGCACTaGTGCCAGGGCTGGCGCACTCTTGAGCTTCCTGCA +
Preference number: 6 (lower is better)
Translates to: GLGWKMRSSRWH*CQGWRTLELPA
Trigger: TGCAGGAAGCTCAAGAGTGCGCCAGCCCTGGCAGCAGTGCCAGCGGGAGCTCCTCATTTTCCAACCCAACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp GGGGAAGCTGCGCTGGCTCATCGGGAAGGTGCCTTCTaGTCTCCAGGGTCCAGAGCTTCTGTGTGCTTTGCT +
Preference number: 6 (lower is better)
Translates to: GEAALAHREGAF*SPGSRASVCFA
Trigger: AGCAAAGCACACAGAAGCTCTGGACCCTGGAGAGCAGAAGGCACCTTCCCGATGAGCCAGCGCAGCTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp CTGCTCTCCAGGGTCCAGAGCTTCTGTGTGCTTTGCTaGTGGTACAGCTTGGGGTGTAGCTGCTTGGGTGGC +
Preference number: 6 (lower is better)
Translates to: LLSRVQSFCVLC*WYSLGCSCLGG
Trigger: GCCACCCAAGCAGCTACACCCCAAGCTGTACCAGCAGCAAAGCACACAGAAGCTCTGGACCCTGGAGAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS GCA 72 bp TTGGGTTGGAAAATGAGGAGCTCCCGCTGGCACTGCTaGCAGGGCTGGCGCACTCTTGAGCTTCCTGCATTT +
Preference number: 6 (lower is better)
Translates to: LGWKMRSSRWHC*QGWRTLELPAF
Trigger: AAATGCAGGAAGCTCAAGAGTGCGCCAGCCCTGGCAGCAGTGCCAGCGGGAGCTCCTCATTTTCCAACCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 72 bp TCCAGAGCTTCTGTGTGCTTTGCTGCTGGTACAGCTTaGGGTGTAGCTGCTTGGGTGGCTAAGGGCCCTACT +
Preference number: 6 (lower is better)
Translates to: SRASVCFAAGTA*GVAAWVAKGPT
Trigger: AGTAGGGCCCTTAGCCACCCAAGCAGCTACACCCCAAGCTGTACCAGCAGCAAAGCACACAGAAGCTCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CCA 72 bp TGCTTTGCTGCTGGTACAGCTTGGGGTGTAGCTGCTTaGGTGGCTAAGGGCCCTACTGAAATGTTCGTCCAC +
Preference number: 6 (lower is better)
Translates to: CFAAGTAWGVAA*VAKGPTEMFVH
Trigger: GTGGACGAACATTTCAGTAGGGCCCTTAGCCACCCAAGCAGCTACACCCCAAGCTGTACCAGCAGCAAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10
CDS CAA 72 bp TGCCAGGGCTGGCGCACTCTTGAGCTTCCTGCATTTTaGAGTAGTAGGCTAGTTTCTGGTGGTAGGGAGTGT +
Preference number: 6 (lower is better)
Translates to: CQGWRTLELPAF*SSRLVSGGREC
Trigger: ACACTCCCTACCACCAGAAACTAGCCTACTACTCAAAAATGCAGGAAGCTCAAGAGTGCGCCAGCCCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000163017.10