RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VEZF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018377

Ensembl transcript IDs: ENSMUST00000018521.11, ENSMUST00000143052.2

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTCCACATGTaGCCGCTGCCCTCCCGGGTCTCCGCAGTGCCATTCCTAGGCCTT +
Preference number: 1 (lower is better)
Translates to: RRAEHMPGNEGFLHM*PLPSRVSAVPFLGL
Trigger: AAGGCCTAGGAATGGCACTGCGGAGACCCGGGAGGGCAGCGGTCACATGTGGAGGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 90 bp GCACAGTCTCAGCGTGCACACTCACTGCAGGGCTTCCACGGAGCATaGAGACAGCTGCCTCCCTGGAAACTCCAGAAAGCGGATACAAGG +
Preference number: 1 (lower is better)
Translates to: AQSQRAHSLQGFHGA*RQLPPWKLQKADTR
Trigger: CCTTGTATCCGCTTTCTGGAGTTTCCAGGGAGGCAGCTGTCTGCATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCTGAGACTGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 90 bp ACTGCCAGCACAACAGAGATGACAAGGCCCGACGAGCAGAGCACATaGCAGGAAATGAAGGTTTCCTCCACATGTGACCGCTGCCCTCCC +
Preference number: 1 (lower is better)
Translates to: TASTTEMTRPDEQST*QEMKVSSTCDRCPP
Trigger: GGGAGGGCAGCGGTCACATGTGGAGGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTTGTGCTGGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 90 bp GGGAAAGCTCTCCACCAGGTTACAACCAGGAGGGAAACCATACTCTaGCTTTCTGTAGAACGGTGGCCGTTGGTGCATTCGACACACGGG +
Preference number: 1 (lower is better)
Translates to: GKALHQVTTRRETIL*LSVERWPLVHSTHG
Trigger: CCCGTGTGTCGAATGCACCAACGGCCACCGTTCTACAGAAAGGCAGAGTATGGTTTCCCTCCTGGTTGTAACCTGGTGGAGAGCTTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 90 bp AGGCTGGATGTCAGATTTGAAGATTATCTAATACAACTGTTTAGCTaGCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGA +
Preference number: 1 (lower is better)
Translates to: RLDVRFEDYLIQLFS*QSDKGKLSTRLQPG
Trigger: TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAGTTGTATTAGATAATCTTCAAATCTGACATCCAGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR TCA 90 bp TTACAACCTCTTGGTTTGAACAAACTGTTCTCTAACATGATGCTTTaGAAACATGAAGTGTGGCGTGATGGCATAGAGTCTCTGTTTCCC +
Preference number: 1 (lower is better)
Translates to: LQPLGLNKLFSNMML*KHEVWRDGIESLFP
Trigger: GGGAAACAGAGACTCTATGCCATCACGCCACACTTCATGTTTTCAAAGCATCATGTTAGAGAACAGTTTGTTCAAACCAAGAGGTTGTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATAGCGTGCACACTCACTaGAGGGCTTCCACGGAGCAT +
Preference number: 2 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHSVHTH*RASTEH
Trigger: ATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCT...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp AAAGCACAGTCTCAGCGTGCACACTCACTGCAGGGCTTCCACGGAGCATGCAGACTGAACAGGATCCCCTaGCCCGTTAGGAGCCTGCTT +
Preference number: 2 (lower is better)
Translates to: KAQSQRAHSLQGFHGACRLNRIP*PVRSLL
Trigger: AAGCAGGCTCCTAACGGGTCAGGGGATCCTGTTCAG...TCTGCATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCTGAGACTGTGCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp AAAGCACAGTCTCAGCGTGCACACTCACTGCAGGGCTTCCACGGAGCATGCAGAAGTTCTCACTCCTCCTaGACAGGATCCCCTGACCCG +
Preference number: 2 (lower is better)
Translates to: KAQSQRAHSLQGFHGACRSSHSS*TGSPDP
Trigger: CGGGTCAGGGGATCCTGTTCAGGAGGAGTGAGAACT...TCTGCATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCTGAGACTGTGCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATGACGAGCAGAGCACATaGCAGGAAATGAAGGTTTCC +
Preference number: 2 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHDEQST*QEMKVS
Trigger: GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTC...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATAACATCAACAGACGTTaGTTGGGAGAGAGAGAGGCA +
Preference number: 2 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHNINRR*LGEREA
Trigger: TGCCTCTCTCTCTCCCAATCAACGTCTGTTGATGTT...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATGGAAGTCATCTTCTGTaGCAGTCCTGCATGCATTCT +
Preference number: 2 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHGSHLL*QSCMHS
Trigger: AGAATGCATGCAGGACTGTCACAGAAGATGACTTCC...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR CAA 90 bp ACCAGGAGGGAAACCATACTCTGCCTTTCTGTAGAACGGTGGCCGTaGGTGCATTCGACACACGGGCGAATCAGCTCAGCATCAGCATCA +
Preference number: 2 (lower is better)
Translates to: TRRETILCLSVERWP*VHSTHGRISSASAS
Trigger: TGATGCTGATGCTGAGCTGATTCGCCCGTGTGTCGAATGCACCAACGGCCACCGTTCTACAGAAAGGCAGAGTATGGTTTCCCTCCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCAGCACAGTCTCAGCGTaGACACTCACTGCAGGGCTT +
Preference number: 2 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSSTVSA*TLTAGL
Trigger: AAGCCCTGCAGTGAGTGTGCACGCTGAGACTGTGCT...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGACACACGGCCTATCTGTaGCCCCTCTGCCCTACCCTC +
Preference number: 2 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGHTAYL*PLCPTL
Trigger: GAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTG...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATTTCTCCTCAGTCAGCTaGAGCCTTTTCTCATCAAAA +
Preference number: 2 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHFSSVS*SLFSSK
Trigger: TTTTGATGAGAAAAGGCTGCAGCTGACTGAGGAGAA...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCAGACAGCTGCCTCCCTaGAAACTCCAGAAAGCGGAT +
Preference number: 2 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSRQLPP*KLQKAD
Trigger: ATCCGCTTTCTGGAGTTTCCAGGGAGGCAGCTGTCT...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGAAGTTCTCACTCCTCCTaGACAGGATCCCCTGACCCG +
Preference number: 2 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGSSHSS*TGSPDP
Trigger: CGGGTCAGGGGATCCTGTTCAGGAGGAGTGAGAACT...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATTCTAACATGATGCTTTaGAAACATGAAGTGTGGCGT +
Preference number: 2 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHSNMML*KHEVWR
Trigger: ACGCCACACTTCATGTTTTCAAAGCATCATGTTAGA...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTGGCTTCCACGGAGCATaGAGACAGCTGCCTCCCTGG +
Preference number: 2 (lower is better)
Translates to: TVGYKQTEVIFCDSPACIGFHGA*RQLPPW
Trigger: CCAGGGAGGCAGCTGTCTGCATGCTCCGTGGAAGCC...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCACACTCTGCTTGTTCTaGAGGGGCATACTACCTAGT +
Preference number: 2 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSTLCLF*RGILPS
Trigger: ACTAGGTAGTATGCCCCTTCAGAACAAGCAGAGTGT...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp AAAGCACAGTCTCAGCGTGCACACTCACTGCAGGGCTTCCACGGAGCATGCAGAAATCTGCACAATACTTaGTTAAACAGAAGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: KAQSQRAHSLQGFHGACRNLHNT*LNRRRG
Trigger: CCCCCTCCTTCTGTTTAATCAAGTATTGTGCAGATT...TCTGCATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCTGAGACTGTGCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATACCATTTTTCCACTGTaGAGAAGAACTGTTGTAACA +
Preference number: 2 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHTIFPL*RRTVVT
Trigger: TGTTACAACAGTTCTTCTCCACAGTGGAAAAATGGT...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp AACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCGGAAGTCATCTTCTGTaGCAGTCCTGCATGCATTCT +
Preference number: 2 (lower is better)
Translates to: NRDDKARRAEHMPGNEGFGSHLL*QSCMHS
Trigger: AGAATGCATGCAGGACTGTCACAGAAGATGACTTCC...GAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTAGCGTGCACACTCACTaGAGGGCTTCCACGGAGCAT +
Preference number: 2 (lower is better)
Translates to: TVGYKQTEVIFCDSPACISVHTH*RASTEH
Trigger: ATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCT...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTCAACAGACGTTGATTaGGAGAGAGAGAGGCATATC +
Preference number: 2 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSSTDVD*ERERHI
Trigger: GATATGCCTCTCTCTCTCCCAATCAACGTCTGTTGA...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CCA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGAAGACAGCTGCCTCCCTaGAAACTCCAGAAAGCGGAT +
Preference number: 2 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGRQLPP*KLQKAD
Trigger: ATCCGCTTTCTGGAGTTTCCAGGGAGGCAGCTGTCT...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGAGACGAGCAGAGCACATaGCAGGAAATGAAGGTTTCC +
Preference number: 2 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGDEQST*QEMKVS
Trigger: GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTC...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CCA 90 bp AACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCTCAACAGACGTTGATTaGGAGAGAGAGAGGCATATC +
Preference number: 2 (lower is better)
Translates to: NRDDKARRAEHMPGNEGFSTDVD*ERERHI
Trigger: GATATGCCTCTCTCTCTCCCAATCAACGTCTGTTGA...GAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTTTGTACTGACACAGTaGGGTATAAACAAACGGAAG +
Preference number: 2 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSFVLTQ*GINKRK
Trigger: CTTCCGTTTGTTTATACCCCACTGTGTCAGTACAAA...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTAACATCAACAGACGTTaGTTGGGAGAGAGAGAGGCA +
Preference number: 2 (lower is better)
Translates to: TVGYKQTEVIFCDSPACININRR*LGEREA
Trigger: TGCCTCTCTCTCTCCCAATCAACGTCTGTTGATGTT...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR GCA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGATTCTCCTCAGTCAGCTaGAGCCTTTTCTCATCAAAA +
Preference number: 2 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGFSSVS*SLFSSK
Trigger: TTTTGATGAGAAAAGGCTGCAGCTGACTGAGGAGAA...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CCA 90 bp AACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCTCTGCCTCAGACGTATaGTATTTTGATGTTTGTACT +
Preference number: 2 (lower is better)
Translates to: NRDDKARRAEHMPGNEGFSASDV*YFDVCT
Trigger: AGTACAAACATCAAAATACCATACGTCTGAGGCAGA...GAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR TCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTAATCTGCACAATACTTaGTTAAACAGAAGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: TVGYKQTEVIFCDSPACINLHNT*LNRRRG
Trigger: CCCCCTCCTTCTGTTTAATCAAGTATTGTGCAGATT...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTACAATTACAACCTCTTaGTTTGAACAAACTGTTCTC +
Preference number: 2 (lower is better)
Translates to: TVGYKQTEVIFCDSPACITITTS*FEQTVL
Trigger: GAGAACAGTTTGTTCAAACCAAGAGGTTGTAATTGT...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 72 bp CAGCGTGCACACTCACTGCAGGGCTTCCACGGAGCATaGAGACAGCTGCCTCCCTGGAAACTCCAGAAAGCG +
Preference number: 3 (lower is better)
Translates to: QRAHSLQGFHGA*RQLPPWKLQKA
Trigger: CGCTTTCTGGAGTTTCCAGGGAGGCAGCTGTCTGCATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 72 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTaGCCTACCCTCACCCATCCTGCCTCAACTCTCTCC +
Preference number: 3 (lower is better)
Translates to: GGFHHTAYLCPL*PTLTHPASTLS
Trigger: GGAGAGAGTTGAGGCAGGATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR TCA 72 bp GAGCACATGCCAGGAAATGAAGGTTTCCTCCACATGTaGCCGCTGCCCTCCCGGGTCTCCGCAGTGCCATTC +
Preference number: 3 (lower is better)
Translates to: EHMPGNEGFLHM*PLPSRVSAVPF
Trigger: GAATGGCACTGCGGAGACCCGGGAGGGCAGCGGTCACATGTGGAGGAAACCTTCATTTCCTGGCATGTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 72 bp CTGGGGGAAGGACCCACACCTGCCCACTTTGAGGACTaGTCCTTGGCCACTGTAGAGGAAGCCTGGGTTATC +
Preference number: 3 (lower is better)
Translates to: LGEGPTPAHFED*SLATVEEAWVI
Trigger: GATAACCCAGGCTTCCTCTACAGTGGCCAAGGAGCAGTCCTCAAAGTGGGCAGGTGTGGGTCCTTCCCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 72 bp ACAACAGAGATGACAAGGCCCGACGAGCAGAGCACATaGCAGGAAATGAAGGTTTCCTCCACATGTGACCGC +
Preference number: 3 (lower is better)
Translates to: TTEMTRPDEQST*QEMKVSSTCDR
Trigger: GCGGTCACATGTGGAGGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 72 bp AGGAAGCCTGGGTTATCTGACCATAAGGACCATGACTaGCAGCACAACAGAGATGACAAGGCCCGACGAGCA +
Preference number: 3 (lower is better)
Translates to: RKPGLSDHKDHD*QHNRDDKARRA
Trigger: TGCTCGTCGGGCCTTGTCATCTCTGTTGTGCTGGCAGTCATGGTCCTTATGGTCAGATAACCCAGGCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR GCA 72 bp CTCCACCAGGTTACAACCAGGAGGGAAACCATACTCTaGCTTTCTGTAGAACGGTGGCCGTTGGTGCATTCG +
Preference number: 3 (lower is better)
Translates to: LHQVTTRRETIL*LSVERWPLVHS
Trigger: CGAATGCACCAACGGCCACCGTTCTACAGAAAGGCAGAGTATGGTTTCCCTCCTGGTTGTAACCTGGTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CAA 90 bp AAAGCACAGTCTCAGCGTGCACACTCACTGCAGGGCTTCCACGGAGCATGCAGAAAATCTGCACAATACTaGATTAAACAGAAGGAGGGG +
Preference number: 3 (lower is better)
Translates to: KAQSQRAHSLQGFHGACRKSAQY*IKQKEG
Trigger: CCCCTCCTTCTGTTTAATCAAGTATTGTGCAGATTT...TCTGCATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCTGAGACTGTGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CAA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCCACATATACCCTACTTaGAACAACCCCAGCAAAATT +
Preference number: 3 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSHIYPT*NNPSKI
Trigger: AATTTTGCTGGGGTTGTTCAAAGTAGGGTATATGTG...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR TCA 72 bp TTTCTTTCTGTAAGAACTAATACTTTCAGGATCTCATaGCCACGCTGTAGCCTGGGGGAAGGACCCACACCT +
Preference number: 3 (lower is better)
Translates to: FLSVRTNTFRIS*PRCSLGEGPTP
Trigger: AGGTGTGGGTCCTTCCCCCAGGCTACAGCGTGGTCATGAGATCCTGAAAGTATTAGTTCTTACAGAAAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CAA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGACACATATACCCTACTTaGAACAACCCCAGCAAAATT +
Preference number: 3 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGHIYPT*NNPSKI
Trigger: AATTTTGCTGGGGTTGTTCAAAGTAGGGTATATGTG...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR-3UTR CAA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGAAAATCTGCACAATACTaGATTAAACAGAAGGAGGGG +
Preference number: 3 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGKSAQY*IKQKEG
Trigger: CCCCTCCTTCTGTTTAATCAAGTATTGTGCAGATTT...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
3UTR TCA 72 bp CTTGGTTTGAACAAACTGTTCTCTAACATGATGCTTTaGAAACATGAAGTGTGGCGTGATGGCATAGAGTCT +
Preference number: 3 (lower is better)
Translates to: LGLNKLFSNMML*KHEVWRDGIES
Trigger: AGACTCTATGCCATCACGCCACACTTCATGTTTTCAAAGCATCATGTTAGAGAACAGTTTGTTCAAACCAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR GCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATGCTGCTGCTTCTGATTaGTGGTCTCCTCACTCATGC +
Preference number: 4 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHAAASD*WSPHSC
Trigger: GCATGAGTGAGGAGACCAGCAATCAGAAGCAGCAGC...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR TCA 90 bp AAAGCACAGTCTCAGCGTGCACACTCACTGCAGGGCTTCCACGGAGCATGCAGATGCTGCTGCTGCTTCTaGTTGCTGGTCTCCTCACTC +
Preference number: 4 (lower is better)
Translates to: KAQSQRAHSLQGFHGACRCCCCF*LLVSSL
Trigger: GAGTGAGGAGACCAGCAATCAGAAGCAGCAGCAGCA...TCTGCATGCTCCGTGGAAGCCCTGCAGTGAGTGTGCACGCTGAGACTGTGCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR TCA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATCAGTGCACGTCTGCATaGGGGAGGAAAATTGGCATT +
Preference number: 4 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHQCTSA*GRKIGI
Trigger: AATGCCAATTTTCCTCCCTCATGCAGACGTGCACTG...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000143052.2
CDS-3UTR CCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCGATGCTTCGTGGGCCTaGAACAGGAACGCGGTCCAG +
Preference number: 4 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSDASWA*NRNAVQ
Trigger: CTGGACCGCGTTCCTGTTCCAGGCCCACGAAGCATC...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018521.11
CDS-3UTR TCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTGCTGCTGCTGCTTCTaGTTGCTGGTCTCCTCACTC +
Preference number: 4 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSCCCCF*LLVSSL
Trigger: GAGTGAGGAGACCAGCAATCAGAAGCAGCAGCAGCA...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR GCA 90 bp AACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTGTTGGTGATGGGATaGTTCGTGGGCCTGGAACAG +
Preference number: 4 (lower is better)
Translates to: NRDDKARRAEHMPGNEGFLLVMG*FVGLEQ
Trigger: CTGTTCCAGGCCCACGAAGCATCCCATCACCAACAG...GAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018521.11
CDS-3UTR CCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCGCTGCTTCTGATTGCTaGTCTCCTCACTCATGCACG +
Preference number: 4 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSAASDC*SPHSCT
Trigger: CGTGCATGAGTGAGGAGACCAGCAATCAGAAGCAGC...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR GCA 90 bp AACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCGCAGCAGTGCACGTCTaGATGAGGGAGGAAAATTGG +
Preference number: 4 (lower is better)
Translates to: NRDDKARRAEHMPGNEGFAAVHV*MREENW
Trigger: CCAATTTTCCTCCCTCATGCAGACGTGCACTGCTGC...GAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143052.2
CDS-3UTR TCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTCATGCACGTTTTGCTaGTGCCTTGTTTGCACGTGT +
Preference number: 4 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSSCTFC*CLVCTC
Trigger: ACACGTGCAAACAAGGCATCAGCAAAACGTGCATGA...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CCA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTTAAAGGTGAGGTCATaGCTAAGGGGCTGGTTATGG +
Preference number: 4 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSLKVRS*LRGWLW
Trigger: CCATAACCAGCCCCTTAGCCATGACCTCACCTTTAA...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CCA 90 bp AACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCTTAAAGGTGAGGTCATaGCTAAGGGGCTGGTTATGG +
Preference number: 4 (lower is better)
Translates to: NRDDKARRAEHMPGNEGFLKVRS*LRGWLW
Trigger: CCATAACCAGCCCCTTAGCCATGACCTCACCTTTAA...GAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR TCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTGCTTACTGGGTTTCTTaGCAGACTGGGGCACAGGCA +
Preference number: 4 (lower is better)
Translates to: TVGYKQTEVIFCDSPACIAYWVS*QTGAQA
Trigger: TGCCTGTGCCCCAGTCTGTCAAGAAACCCAGTAAGC...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018521.11
CDS-3UTR GCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTGCTGCTGCTTCTGATTaGTGGTCTCCTCACTCATGC +
Preference number: 4 (lower is better)
Translates to: TVGYKQTEVIFCDSPACIAAASD*WSPHSC
Trigger: GCATGAGTGAGGAGACCAGCAATCAGAAGCAGCAGC...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CCA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGAGCAGCAGTGCACGTTTaGCATTTGAAGGGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGAAVHV*HLKGLS
Trigger: AGAAAGACCCTTCAAATGCCAAACGTGCACTGCTGC...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018521.11
CDS-3UTR TCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTTCATGCACGTTTTGCTaGTGCCTTGTTTGCACGTGT +
Preference number: 4 (lower is better)
Translates to: TVGYKQTEVIFCDSPACISCTFC*CLVCTC
Trigger: ACACGTGCAAACAAGGCATCAGCAAAACGTGCATGA...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR TCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTGCCTCATTGCTATATTaGGAGGGGCAGCTAATGTCA +
Preference number: 4 (lower is better)
Translates to: TVGYKQTEVIFCDSPACIASLLY*EGQLMS
Trigger: TGACATTAGCTGCCCCTCTCAATATAGCAATGAGGC...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CCA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGACCATGTGTCTTTAAGTaGCTGGTGATATATGCTGCA +
Preference number: 4 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGPCVFK*LVIYAA
Trigger: TGCAGCATATATCACCAGCCACTTAAAGACACATGG...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTCCATGTGTCTTTAAGTaGCTGGTGATATATGCTGCA +
Preference number: 4 (lower is better)
Translates to: TVGYKQTEVIFCDSPACIPCVFK*LVIYAA
Trigger: TGCAGCATATATCACCAGCCACTTAAAGACACATGG...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CCA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTATGAGGGAGGAAAATTaGCATTTGAAGGGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: TVGYKQTEVIFCDSPACIMREEN*HLKGLS
Trigger: AGAAAGACCCTTCAAATGCCAATTTTCCTCCCTCAT...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143052.2
3UTR CAA 72 bp TGCAGTATTTTGCATGTTAGTAATACAGTGCTGGTATaGACAGGTAAATCATCATCCGCGTACATAGAAACC +
Preference number: 4 (lower is better)
Translates to: CSILHVSNTVLV*TGKSSSAYIET
Trigger: GGTTTCTATGTACGCGGATGATGATTTACCTGTCAATACCAGCACTGTATTACTAACATGCAAAATACTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATGGCAGCAGTGCACGTTaGGCATTTGAAGGGTCTTTC +
Preference number: 5 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHGSSAR*AFEGSF
Trigger: GAAAGACCCTTCAAATGCCAAACGTGCACTGCTGCC...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018521.11
CDS-3UTR CAA 90 bp GGAGGATTTCACCACACGGCCTATCTGTGCCCCCTCTGCCCTACCCTCACCCATTCACTCATGCACGTTTaGCTGATGCCTTGTTTGCAC +
Preference number: 5 (lower is better)
Translates to: GGFHHTAYLCPLCPTLTHSLMHV*LMPCLH
Trigger: GTGCAAACAAGGCATCAGCAAAACGTGCATGAGTGA...ATGGGTGAGGGTAGGGCAGAGGGGGCACAGATAGGCCGTGTGGTGAAATCCTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS TCA 90 bp TGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTTCTaGTTGCTGGTCTCCTCACTCATGCACGTTTTGCTGATGCCTTGT +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCF*LLVSSLMHVLLMPC
Trigger: ACAAGGCATCAGCAAAACGTGCATGAGTGAGGAGACCAGCAATCAGAAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTTAGGTGGTCAGGCCTaGAGAAGCCTTTCCCACAAA +
Preference number: 5 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSLGGQA*RSLSHK
Trigger: TTTGTGGGAAAGGCTTCTCAAGGCCTGACCACCTAA...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCGCTTGTCACATGTTGTaGTTGTTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSACHML*LLLLLL
Trigger: CAGCAGCAGCAGCAACAACAACAACATGTGACAAGC...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCTCACTCATGCACGTTTaGCTGATGCCTTGTTTGCAC +
Preference number: 5 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSSLMHV*LMPCLH
Trigger: GTGCAAACAAGGCATCAGCAAAACGTGCATGAGTGA...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp AACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCCAGCTTGTCACATGTaGTTGTTGTTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: NRDDKARRAEHMPGNEGFPACHM*LLLLLL
Trigger: CAGCAGCAGCAACAACAACAACATGTGACAAGCTGG...GAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTGGCTTACTGGGTTTCTaGACAGACTGGGGCACAGGC +
Preference number: 5 (lower is better)
Translates to: TVGYKQTEVIFCDSPACIGLLGF*TDWGTG
Trigger: GCCTGTGCCCCAGTCTGTCAAGAAACCCAGTAAGCC...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018521.11
CDS-3UTR CAA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGACAGGCGTGGTTCTTCTaGACAGGCTTACTGGGTTTC +
Preference number: 5 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGQAWFF*TGLLGF
Trigger: GAAACCCAGTAAGCCTGTCAAGAAGAACCACGCCTG...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018521.11
CDS-3UTR CAA 90 bp ACAGAGATGACAAGGCCCGACGAGCAGAGCACATGCCAGGAAATGAAGGTTTCCCATGAGGGAGGAAAATaGGCATTTGAAGGGTCTTTC +
Preference number: 5 (lower is better)
Translates to: TEMTRPDEQSTCQEMKVSHEGGK*AFEGSF
Trigger: GAAAGACCCTTCAAATGCCAATTTTCCTCCCTCATG...GGAAACCTTCATTTCCTGGCATGTGCTCTGCTCGTCGGGCCTTGTCATCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGACCAGCTTGTCACATGTaGTTGTTGTTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGPACHM*LLLLLL
Trigger: CAGCAGCAGCAACAACAACAACATGTGACAAGCTGG...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGAGCTTCCCTGGCCAGCTaGTCACATGTTGTTGTTGTT +
Preference number: 5 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGASLAS*SHVVVV
Trigger: AACAACAACAACATGTGACAAGCTGGCCAGGGAAGC...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp CTGTTTAGCTGCCAATCTGATAAGGGAAAGCTCTCCACCAGGTTACAACCAGGAGGCCTCATTGCTATATaGAGAGGGGCAGCTAATGTC +
Preference number: 5 (lower is better)
Translates to: LFSCQSDKGKLSTRLQPGGLIAI*RGAANV
Trigger: GACATTAGCTGCCCCTCTCAATATAGCAATGAGGCC...TCCTGGTTGTAACCTGGTGGAGAGCTTTCCCTTATCAGATTGGCAGCTAAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS-3UTR CAA 90 bp ACAGTGGGGTATAAACAAACGGAAGTCATCTTCTGTGACAGTCCTGCATGCATTTTAGGTGGTCAGGCCTaGAGAAGCCTTTCCCACAAA +
Preference number: 5 (lower is better)
Translates to: TVGYKQTEVIFCDSPACILGGQA*RSLSHK
Trigger: TTTGTGGGAAAGGCTTCTCAAGGCCTGACCACCTAA...AATGCATGCAGGACTGTCACAGAAGATGACTTCCGTTTGTTTATACCCCACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2
CDS GCA 72 bp TTCCCTGGCCAGCTTGTCACATGTTGTTGTTGTTGCTaGTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: FPGQLVTCCCCC*CCCCCCCCCCF
Trigger: GAAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAACAACAACATGTGACAAGCTGGCCAGGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000018521.11
ENSMUST00000143052.2