Pregenerated sensors for VEGFC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031520Ensembl transcript IDs: ENSMUST00000033919.6, ENSMUST00000210831.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACACGGCAGCTGCTTAGAGTCTATAGACCACTCTTCACTAAAAACTaGATGGCAACTCATAAATCTGTGATGAGAAGATTTGGGAGGATG | + |
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Preference number: 1 (lower is better) Translates to: TRQLLRVYRPLFTKN*MATHKSVMRRFGRM Trigger: CATCCTCCCAAATCTTCTCATCACAGATTTATGAGTTGCCATTCAGTTTTTAGTGAAGAGTGGTCTATAGACTCTAAGCAGCTGCCGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR-3UTR TCA 90 bp | CAGGTTCCAACCTTCTTTAAAAAGCTTCAGGAGGCATACCGAATGAAGCTAAGATGTCCAGACAGTAAATaGACACACAGTGGACACGGC | + |
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Preference number: 2 (lower is better) Translates to: QVPTFFKKLQEAYRMKLRCPDSK*THSGHG Trigger: GCCGTGTCCACTGTGTGTTCATTTACTGTCTGGACA...TCTTAGCTTCATTCGGTATGCCTCCTGAAGCTTTTTAAAGAAGGTTGGAACCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR-3UTR CCA 90 bp | CAGGTTCCAACCTTCTTTAAAAAGCTTCAGGAGGCATACCGAATGAAGCTAAGATGTGATGAGAAGATTTaGGAGGATGGTATTTCATTT | + |
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Preference number: 2 (lower is better) Translates to: QVPTFFKKLQEAYRMKLRCDEKI*EDGISF Trigger: AAATGAAATACCATCCTCCCAAATCTTCTCATCACA...TCTTAGCTTCATTCGGTATGCCTCCTGAAGCTTTTTAAAGAAGGTTGGAACCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR CAA 90 bp | AATTTCAAAGATGGAGAACATTGTGTGATCATGGATCATGCCGTCTaGTATAATGCAGAGGTTGACCATGATTTTCATGCTTTTCCTCTT | + |
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Preference number: 2 (lower is better) Translates to: NFKDGEHCVIMDHAV*YNAEVDHDFHAFPL Trigger: AAGAGGAAAAGCATGAAAATCATGGTCAACCTCTGCATTATACAAGACGGCATGATCCATGATCACACAATGTTCTCCATCTTTGAAATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR-3UTR GCA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAACACAGAGTCTTTCTGTaGATAGACAGTGCTAATGTG | + |
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Preference number: 2 (lower is better) Translates to: MVFHFLKPDSNVRWQKTEHRVFL*IDSANV Trigger: CACATTAGCACTGTCTATGCACAGAAAGACTCTGTG...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGGGAGGATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGAGAGTAAAATGGTaGACTGAAAACTGGTATGAT | + |
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Preference number: 2 (lower is better) Translates to: FGRMVFHFLKPDSNVRWQKRVKW*TENWYD Trigger: ATCATACCAGTTTTCAGTCCACCATTTTACTCTCTT...TTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCATCCTCCCAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR CCA 72 bp | TGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATaGTCCCACAGAGTCTTTCTGTGCATAGACAGTGCT | + |
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Preference number: 3 (lower is better) Translates to: WFNKHRLGPLLP*SHRVFLCIDSA Trigger: AGCACTGTCTATGCACAGAAAGACTCTGTGGGACCATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR-3UTR CAA 90 bp | CAGGTTCCAACCTTCTTTAAAAAGCTTCAGGAGGCATACCGAATGAAGCTAAGATGTATAATGCAGAGGTaGACCATGATTTTCATGCTT | + |
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Preference number: 3 (lower is better) Translates to: QVPTFFKKLQEAYRMKLRCIMQR*TMIFML Trigger: AAGCATGAAAATCATGGTCAACCTCTGCATTATACA...TCTTAGCTTCATTCGGTATGCCTCCTGAAGCTTTTTAAAGAAGGTTGGAACCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR TCA 72 bp | CTGCTTAGAGTCTATAGACCACTCTTCACTAAAAACTaGATGGCAACTCATAAATCTGTGATGAGAAGATTT | + |
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Preference number: 3 (lower is better) Translates to: LLRVYRPLFTKN*MATHKSVMRRF Trigger: AAATCTTCTCATCACAGATTTATGAGTTGCCATTCAGTTTTTAGTGAAGAGTGGTCTATAGACTCTAAGCAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR GCA 90 bp | TCCCGCAGTAATCCACATGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATTTGAGGGTGGGCTGCTaGCAGCCGCCTTTCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SRSNPHGSINTDLGLCYHLRVGC*QPPFRS Trigger: GCTGCGGAAAGGCGGCTGGCAGCAGCCCACCCTCAA...ATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCATGTGGATTACTGCGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | TTAGAGTCTATAGACCACTCTTCACTAAAAACTGAATGGCAACTCATAAATCTGGCGCCTCGCGCGGACTaGGGATCAGCGCAGCGGCGA | + |
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Preference number: 4 (lower is better) Translates to: LESIDHSSLKTEWQLINLAPRAD*GSAQRR Trigger: TCGCCGCTGCGCTGATCCCCAGTCCGCGCGAGGCGC...CAGATTTATGAGTTGCCATTCAGTTTTTAGTGAAGAGTGGTCTATAGACTCTAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR TCA 90 bp | TCCCGCAGTAATCCACATGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATCCCTTGCAGACACACTaGCAGGTGTCTTCATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: SRSNPHGSINTDLGLCYHPLQTH*QVSSSS Trigger: GCTGGATGAAGACACCTGTCAGTGTGTCTGCAAGGG...ATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCATGTGGATTACTGCGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR GCA 90 bp | TCCCGCAGTAATCCACATGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATGAAGGTGTTTGTGGCTaGTCCAAACTCCTTCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: SRSNPHGSINTDLGLCYHEGVCG*SKLLPH Trigger: GTGGGGAAGGAGTTTGGAGCAGCCACAAACACCTTC...ATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCATGTGGATTACTGCGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | CAGGTTCCAACCTTCTTTAAAAAGCTTCAGGAGGCATACCGAATGAAGCTAAGATCAGCTCATCTACGCTaGACACAGACCGCAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: QVPTFFKKLQEAYRMKLRSAHLR*TQTATA Trigger: AGCAGTTGCGGTCTGTGTCCAGCGTAGATGAGCTGA...TCTTAGCTTCATTCGGTATGCCTCCTGAAGCTTTTTAAAGAAGGTTGGAACCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | CAGGTTCCAACCTTCTTTAAAAAGCTTCAGGAGGCATACCGAATGAAGCTAAGACCGCCTTTCCGCAGCTaGCACTTGTACATTTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: QVPTFFKKLQEAYRMKLRPPFRS*HLYIFQ Trigger: CTGGAAAATGTACAAGTGCCAGCTGCGGAAAGGCGG...TCTTAGCTTCATTCGGTATGCCTCCTGAAGCTTTTTAAAGAAGGTTGGAACCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | TCCCGCAGTAATCCACATGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATCCTTTTCCAATACGATaGGACACAGCGGCATACTTC | + |
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Preference number: 4 (lower is better) Translates to: SRSNPHGSINTDLGLCYHPFPIR*DTAAYF Trigger: GAAGTATGCCGCTGTGTCCCATCGTATTGGAAAAGG...ATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCATGTGGATTACTGCGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | TCCCGCAGTAATCCACATGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATCTATCTAGTTCTTTGTaGGGTCCACAACTAGATGGC | + |
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Preference number: 4 (lower is better) Translates to: SRSNPHGSINTDLGLCYHLSSSL*GPQLDG Trigger: GCCATCTAGTTGTGGACCCCACAAAGAACTAGATAG...ATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCATGTGGATTACTGCGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR GCA 90 bp | TTAGAGTCTATAGACCACTCTTCACTAAAAACTGAATGGCAACTCATAAATCTGCTGGTGTTCATGCACTaGAGCCCCTCGCTGTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LESIDHSSLKTEWQLINLLVFMH*SPSLLQ Trigger: CTGCAACAGCGAGGGGCTGCAGTGCATGAACACCAG...CAGATTTATGAGTTGCCATTCAGTTTTTAGTGAAGAGTGGTCTATAGACTCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR TCA 90 bp | TTTGGGAGGATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAACACCGGCAGGAAGTGTaGTTGGCAAAACTGATTGTG | + |
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Preference number: 4 (lower is better) Translates to: FGRMVFHFLKPDSNVRWQHRQEV*LAKLIV Trigger: CACAATCAGTTTTGCCAATCACACTTCCTGCCGGTG...TTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCATCCTCCCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR TCA 90 bp | TTTGGGAGGATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAGTCTTGTTAGCTGCCTaGCACTGTGGTAATGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: FGRMVFHFLKPDSNVRWQVLLAA*HCGNVA Trigger: AGCAACATTACCACAGTGTCAGGCAGCTAACAAGAC...TTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCATCCTCCCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR TCA 90 bp | TCCCGCAGTAATCCACATGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATTTTTTACAGACACACTaGCATGAGTCTCTATCTAGT | + |
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Preference number: 4 (lower is better) Translates to: SRSNPHGSINTDLGLCYHFLQTH*HESLSS Trigger: ACTAGATAGAGACTCATGTCAGTGTGTCTGTAAAAA...ATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCATGTGGATTACTGCGGGA 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | CAGGTTCCAACCTTCTTTAAAAAGCTTCAGGAGGCATACCGAATGAAGCTAAGACCACACATAGTTTGTTaGACATGTCTTGTTAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QVPTFFKKLQEAYRMKLRPHIVC*TCLVSC Trigger: GCAGCTAACAAGACATGTCCAACAAACTATGTGTGG...TCTTAGCTTCATTCGGTATGCCTCCTGAAGCTTTTTAAAGAAGGTTGGAACCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| 3UTR CAA 72 bp | GATGGAGAACATTGTGTGATCATGGATCATGCCGTCTaGTATAATGCAGAGGTTGACCATGATTTTCATGCT | + |
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Preference number: 4 (lower is better) Translates to: DGEHCVIMDHAV*YNAEVDHDFHA Trigger: AGCATGAAAATCATGGTCAACCTCTGCATTATACAAGACGGCATGATCCATGATCACACAATGTTCTCCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAACATCCAGCTCCTTGTTaGGTCCACAGACATCATGGA | + |
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Preference number: 4 (lower is better) Translates to: MVFHFLKPDSNVRWQKTEHPAPC*VHRHHG Trigger: TCCATGATGTCTGTGGACCCAACAAGGAGCTGGATG...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR GCA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAAACACCTCACGTGGCATaGATTGAGTCTTTCTCCACT | + |
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Preference number: 4 (lower is better) Translates to: MVFHFLKPDSNVRWQKTETPHVA*IESFST Trigger: AGTGGAGAAAGACTCAATGCATGCCACGTGAGGTGT...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR TCA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAACCTGTTGGCTCCACATaGATTAGGGAAAAGTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: MVFHFLKPDSNVRWQKTEPVGST*IREKFV Trigger: AACAAACTTTTCCCTAATTCATGTGGAGCCAACAGG...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAAGTAGACGGACACACATaGAGGTTTAAAGAAGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: MVFHFLKPDSNVRWQKTEVDGHT*RFKEGV Trigger: AACACCTTCTTTAAACCTCCATGTGTGTCCGTCTAC...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAACAGGGGCTGATTTCTTaGACACGTTCTTTTACATAC | + |
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Preference number: 4 (lower is better) Translates to: MVFHFLKPDSNVRWQKTEQGLIS*TRSFTY Trigger: GTATGTAAAAGAACGTGTCCAAGAAATCAGCCCCTG...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR GCA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAAGTCTTCTGTAACAACTaGATGTTTGATGGTGGAACT | + |
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Preference number: 4 (lower is better) Translates to: MVFHFLKPDSNVRWQKTEVFCNN*MFDGGT Trigger: AGTTCCACCATCAAACATGCAGTTGTTACAGAAGAC...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CCA 90 bp | TTAGAGTCTATAGACCACTCTTCACTAAAAACTGAATGGCAACTCATAAATCTGCATCATGGAATCCATTaGTTGAGTCATCTTCAACAT | + |
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Preference number: 4 (lower is better) Translates to: LESIDHSSLKTEWQLINLHHGIH*LSHLQH Trigger: ATGTTGAAGATGACTCAACCAATGGATTCCATGATG...CAGATTTATGAGTTGCCATTCAGTTTTTAGTGAAGAGTGGTCTATAGACTCTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS CCA 90 bp | GCTCCGCTTCCGAGAAGCCCAGTCCCGACTCGAAGGCGGCGACGGTaGCGGGCGCCTCGCGCGGACTGGGGATCAGCGCAGCGGCGAGCA | + |
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Preference number: 5 (lower is better) Translates to: APLPRSPVPTRRRRR*RAPRADWGSAQRRA Trigger: TGCTCGCCGCTGCGCTGATCCCCAGTCCGCGCGAGGCGCCCGCCACCGTCGCCGCCTTCGAGTCGGGACTGGGCTTCTCGGAAGCGGAGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS GCA 90 bp | TACAGGACAGACATCAGCTCATCTACGCTGGACACAGACCGCAACTaGTCCTCCAGGTCTTTGCCTTCAAAAGCCTTGACCTCGCCCCCG | + |
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Preference number: 5 (lower is better) Translates to: YRTDISSSTLDTDRN*SSRSLPSKALTSPP Trigger: CGGGGGCGAGGTCAAGGCTTTTGAAGGCAAAGACCTGGAGGAGCAGTTGCGGTCTGTGTCCAGCGTAGATGAGCTGATGTCTGTCCTGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 90 bp | CCAGCCGCCTTTCCGCAGCTGGCACTTGTACATTTTCCAGTAGTCTaGGTACAGGACAGACATCAGCTCATCTACGCTGGACACAGACCG | + |
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Preference number: 5 (lower is better) Translates to: PAAFPQLALVHFPVV*VQDRHQLIYAGHRP Trigger: CGGTCTGTGTCCAGCGTAGATGAGCTGATGTCTGTCCTGTACCCAGACTACTGGAAAATGTACAAGTGCCAGCTGCGGAAAGGCGGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 90 bp | CCCCTCGCTGTTGCAGCAACCCCCACATCTGTAGACGGACACACATaGAGGTTTAAAGAAGGTGTTTGTGGCTGCTCCAAACTCCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: PLAVAATPTSVDGHT*RFKEGVCGCSKLLP Trigger: GGGAAGGAGTTTGGAGCAGCCACAAACACCTTCTTTAAACCTCCATGTGTGTCCGTCTACAGATGTGGGGGTTGCTGCAACAGCGAGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 90 bp | TTTTCCAGTAGTCTGGGTACAGGACAGACATCAGCTCATCTACGCTaGACACAGACCGCAACTGCTCCTCCAGGTCTTTGCCTTCAAAAG | + |
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Preference number: 5 (lower is better) Translates to: FSSSLGTGQTSAHLR*TQTATAPPGLCLQK Trigger: CTTTTGAAGGCAAAGACCTGGAGGAGCAGTTGCGGTCTGTGTCCAGCGTAGATGAGCTGATGTCTGTCCTGTACCCAGACTACTGGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 90 bp | CCCCCTTGCAGACACACTGACAGGTGTCTTCATCCAGCTCCTTGTTaGGTCCACAGACATCATGGAATCCATTGGTTGAGTCATCTTCAA | + |
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Preference number: 5 (lower is better) Translates to: PPCRHTDRCLHPAPC*VHRHHGIHWLSHLQ Trigger: TTGAAGATGACTCAACCAATGGATTCCATGATGTCTGTGGACCCAACAAGGAGCTGGATGAAGACACCTGTCAGTGTGTCTGCAAGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CAA 90 bp | TCCCGCAGTAATCCACATGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATCTGATTGTGACTGGTTaGGGGCCTTGTGAGAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SRSNPHGSINTDLGLCYHLIVTG*GPCERG Trigger: GCCTCTCTCACAAGGCCCCAAACCAGTCACAATCAG...ATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCATGTGGATTACTGCGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS GCA 90 bp | TCTGTAGACGGACACACATGGAGGTTTAAAGAAGGTGTTTGTGGCTaGTCCAAACTCCTTCCCCACATCTATACACACCTCACGTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: SVDGHTWRFKEGVCG*SKLLPHIYTHLTWH Trigger: ATGCCACGTGAGGTGTGTATAGATGTGGGGAAGGAGTTTGGAGCAGCCACAAACACCTTCTTTAAACCTCCATGTGTGTCCGTCTACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 90 bp | ATACGATGGGACACAGCGGCATACTTCTTCACTAAAGGACAGTCCTaGATCACAATGCTTCAGTCGATTCGCACACGGTCTTCTGTAACA | + |
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Preference number: 5 (lower is better) Translates to: IRWDTAAYFFTKGQS*ITMLQSIRTRSSVT Trigger: TGTTACAGAAGACCGTGTGCGAATCGACTGAAGCATTGTGATCCAGGACTGTCCTTTAGTGAAGAAGTATGCCGCTGTGTCCCATCGTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS TCA 90 bp | GGAAGTGTGATTGGCAAAACTGATTGTGACTGGTTTGGGGCCTTGTaGGAGAGGCACTGTAATTTCAAACAACGTCTTGCTGAGGTAACC | + |
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Preference number: 5 (lower is better) Translates to: GSVIGKTDCDWFGAL*ERHCNFKQRLAEVT Trigger: GGTTACCTCAGCAAGACGTTGTTTGAAATTACAGTGCCTCTCTCACAAGGCCCCAAACCAGTCACAATCAGTTTTGCCAATCACACTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CAA 90 bp | TTAGAGTCTATAGACCACTCTTCACTAAAAACTGAATGGCAACTCATAAATCTGTGCAGCCCCTCGCTGTaGCAGCAACCCCCACATCTG | + |
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Preference number: 5 (lower is better) Translates to: LESIDHSSLKTEWQLINLCSPSL*QQPPHL Trigger: CAGATGTGGGGGTTGCTGCAACAGCGAGGGGCTGCA...CAGATTTATGAGTTGCCATTCAGTTTTTAGTGAAGAGTGGTCTATAGACTCTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CAA 90 bp | TCCCGCAGTAATCCACATGGTTCAATAAACACAGACTTGGGCCTCTGTTACCATGTAACAACTGCATGTTaGATGGTGGAACTTCTTCCC | + |
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Preference number: 5 (lower is better) Translates to: SRSNPHGSINTDLGLCYHVTTAC*MVELLP Trigger: GGGAAGAAGTTCCACCATCAAACATGCAGTTGTTAC...ATGGTAACAGAGGCCCAAGTCTGTGTTTATTGAACCATGTGGATTACTGCGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS TCA 90 bp | CCAAACTCCTTCCCCACATCTATACACACCTCACGTGGCATGCATTaGGTCTTTCTCCACTCATTATCAATACTTTTCAGGATCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: PNSFPTSIHTSRGMH*VFLHSLSILFRISV Trigger: CACAGAGATCCTGAAAAGTATTGATAATGAGTGGAGAAAGACTCAATGCATGCCACGTGAGGTGTGTATAGATGTGGGGAAGGAGTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS GCA 90 bp | CTGCTCCAAACTCCTTCCCCACATCTATACACACCTCACGTGGCATaGATTGAGTCTTTCTCCACTCATTATCAATACTTTTCAGGATCT | + |
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Preference number: 5 (lower is better) Translates to: LLQTPSPHLYTPHVA*IESFSTHYQYFSGS Trigger: AGATCCTGAAAAGTATTGATAATGAGTGGAGAAAGACTCAATGCATGCCACGTGAGGTGTGTATAGATGTGGGGAAGGAGTTTGGAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS-3UTR CAA 90 bp | TTTGGGAGGATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAATCATCCAGCTCCTTGTaGGGTCCACAGACATCATGG | + |
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Preference number: 5 (lower is better) Translates to: FGRMVFHFLKPDSNVRWQSSSSL*GPQTSW Trigger: CCATGATGTCTGTGGACCCAACAAGGAGCTGGATGA...TTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCATCCTCCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS CCA 90 bp | TGTACATTCACAGGCACATTTCCCAGGATTCAGGGGCTGATTTCTTaGACACGTTCTTTTACATACACACTGACATGTATTCTCATCAAA | + |
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Preference number: 5 (lower is better) Translates to: CTFTGTFPRIQGLIS*TRSFTYTLTCILIK Trigger: TTTGATGAGAATACATGTCAGTGTGTATGTAAAAGAACGTGTCCAAGAAATCAGCCCCTGAATCCTGGGAAATGTGCCTGTGAATGTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CAA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAATCTTCATCCAGCTCCTaGTTGGGTCCACAGACATCA | + |
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Preference number: 5 (lower is better) Translates to: MVFHFLKPDSNVRWQKTESSSSS*LGPQTS Trigger: TGATGTCTGTGGACCCAACAAGGAGCTGGATGAAGA...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CAA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAACTCACGTGGCATGCATaGAGTCTTTCTCCACTCATT | + |
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Preference number: 5 (lower is better) Translates to: MVFHFLKPDSNVRWQKTELTWHA*SLSPLI Trigger: AATGAGTGGAGAAAGACTCAATGCATGCCACGTGAG...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CAA 90 bp | TTTGGGAGGATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAATCAGGGGCTGATTTCTaGGACACGTTCTTTTACATA | + |
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Preference number: 5 (lower is better) Translates to: FGRMVFHFLKPDSNVRWQSGADF*DTFFYI Trigger: TATGTAAAAGAACGTGTCCAAGAAATCAGCCCCTGA...TTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCATCCTCCCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS-3UTR CAA 90 bp | ATGGTATTTCATTTTCTGAAACCTGACTCCAATGTAAGATGGCAAAAGACTGAATCTCTATCTAGTTCTTaGTGGGGTCCACAACTAGAT | + |
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Preference number: 5 (lower is better) Translates to: MVFHFLKPDSNVRWQKTESLSSS*WGPQLD Trigger: ATCTAGTTGTGGACCCCACAAAGAACTAGATAGAGA...TTCAGTCTTTTGCCATCTTACATTGGAGTCAGGTTTCAGAAAATGAAATACCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS CAA 72 bp | ACGCTGGACACAGACCGCAACTGCTCCTCCAGGTCTTaGCCTTCAAAAGCCTTGACCTCGCCCCCGTCGGGC | + |
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Preference number: 6 (lower is better) Translates to: TLDTDRNCSSRS*PSKALTSPPSG Trigger: GCCCGACGGGGGCGAGGTCAAGGCTTTTGAAGGCAAAGACCTGGAGGAGCAGTTGCGGTCTGTGTCCAGCGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS GCA 72 bp | ACACTGTCCCCTGTCCTGGTATTGAGGGTGGGCTGCTaGCAGCCGCCTTTCCGCAGCTGGCACTTGTACATT | + |
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Preference number: 6 (lower is better) Translates to: TLSPVLVLRVGC*QPPFRSWHLYI Trigger: AATGTACAAGTGCCAGCTGCGGAAAGGCGGCTGGCAGCAGCCCACCCTCAATACCAGGACAGGGGACAGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CAA 72 bp | GCAGCAGCAAATTTTACACTGTCCCCTGTCCTGGTATaGAGGGTGGGCTGCTGCCAGCCGCCTTTCCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: AAANFTLSPVLV*RVGCCQPPFRS Trigger: GCTGCGGAAAGGCGGCTGGCAGCAGCCCACCCTCAATACCAGGACAGGGGACAGTGTAAAATTTGCTGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS GCA 72 bp | CTGTGCTGGTGTTCATGCACTGCAGCCCCTCGCTGTTaGAGCAACCCCCACATCTGTAGACGGACACACATG | + |
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Preference number: 6 (lower is better) Translates to: LCWCSCTAAPRC*SNPHICRRTHM Trigger: CATGTGTGTCCGTCTACAGATGTGGGGGTTGCTGCAACAGCGAGGGGCTGCAGTGCATGAACACCAGCACAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 72 bp | TTTCCGCAGCTGGCACTTGTACATTTTCCAGTAGTCTaGGTACAGGACAGACATCAGCTCATCTACGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: FPQLALVHFPVV*VQDRHQLIYAG Trigger: TCCAGCGTAGATGAGCTGATGTCTGTCCTGTACCCAGACTACTGGAAAATGTACAAGTGCCAGCTGCGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 72 bp | GTTGCAGCAACCCCCACATCTGTAGACGGACACACATaGAGGTTTAAAGAAGGTGTTTGTGGCTGCTCCAAA | + |
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Preference number: 6 (lower is better) Translates to: VAATPTSVDGHT*RFKEGVCGCSK Trigger: TTTGGAGCAGCCACAAACACCTTCTTTAAACCTCCATGTGTGTCCGTCTACAGATGTGGGGGTTGCTGCAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 72 bp | GACACAGCGGCATACTTCTTCACTAAAGGACAGTCCTaGATCACAATGCTTCAGTCGATTCGCACACGGTCT | + |
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Preference number: 6 (lower is better) Translates to: DTAAYFFTKGQS*ITMLQSIRTRS Trigger: AGACCGTGTGCGAATCGACTGAAGCATTGTGATCCAGGACTGTCCTTTAGTGAAGAAGTATGCCGCTGTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS GCA 72 bp | GGACACACATGGAGGTTTAAAGAAGGTGTTTGTGGCTaGTCCAAACTCCTTCCCCACATCTATACACACCTC | + |
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Preference number: 6 (lower is better) Translates to: GHTWRFKEGVCG*SKLLPHIYTHL Trigger: GAGGTGTGTATAGATGTGGGGAAGGAGTTTGGAGCAGCCACAAACACCTTCTTTAAACCTCCATGTGTGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CAA 90 bp | ATGCTTCAGTCGATTCGCACACGGTCTTCTGTAACAACTGCATGTTaGATGGTGGAACTTCTTCCCTTTAAGGAAGCACTTCTGTGTGTT | + |
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Preference number: 6 (lower is better) Translates to: MLQSIRTRSSVTTAC*MVELLPFKEALLCV Trigger: AACACACAGAAGTGCTTCCTTAAAGGGAAGAAGTTCCACCATCAAACATGCAGTTGTTACAGAAGACCGTGTGCGAATCGACTGAAGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS TCA 72 bp | ATTGGCAAAACTGATTGTGACTGGTTTGGGGCCTTGTaGGAGAGGCACTGTAATTTCAAACAACGTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: IGKTDCDWFGAL*ERHCNFKQRLA Trigger: AGCAAGACGTTGTTTGAAATTACAGTGCCTCTCTCACAAGGCCCCAAACCAGTCACAATCAGTTTTGCCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS CAA 72 bp | TCGATTCGCACACGGTCTTCTGTAACAACTGCATGTTaGATGGTGGAACTTCTTCCCTTTAAGGAAGCACTT | + |
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Preference number: 6 (lower is better) Translates to: SIRTRSSVTTAC*MVELLPFKEAL Trigger: AAGTGCTTCCTTAAAGGGAAGAAGTTCCACCATCAAACATGCAGTTGTTACAGAAGACCGTGTGCGAATCGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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| CDS GCA 72 bp | ACTCCTTCCCCACATCTATACACACCTCACGTGGCATaGATTGAGTCTTTCTCCACTCATTATCAATACTTT | + |
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Preference number: 6 (lower is better) Translates to: TPSPHLYTPHVA*IESFSTHYQYF Trigger: AAAGTATTGATAATGAGTGGAGAAAGACTCAATGCATGCCACGTGAGGTGTGTATAGATGTGGGGAAGGAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033919.6 ENSMUST00000210831.2 |
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| CDS CCA 72 bp | TCTTCATCCAGCTCCTTGTTGGGTCCACAGACATCATaGAATCCATTGGTTGAGTCATCTTCAACATTTGAA | + |
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Preference number: 6 (lower is better) Translates to: SSSSSLLGPQTS*NPLVESSSTFE Trigger: TTCAAATGTTGAAGATGACTCAACCAATGGATTCCATGATGTCTGTGGACCCAACAAGGAGCTGGATGAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033919.6 |
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