Pregenerated sensors for VDAC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021771Ensembl transcript IDs: ENSMUST00000022293.14
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TATAGGGGGCCGCACCACGGCAGCACTGATAACCATCCAACTAGGAACCAGCCACATCATCCTTTGATGTaGTCACCTTCTGGGGGAAGG | + |
|
Preference number: 2 (lower is better) Translates to: YRGPHHGSTDNHPTRNQPHHPLM*SPSGGR Trigger: CCTTCCCCCAGAAGGTGATCACATCAAAGGATGATG...TGGCTGGTTCCTAGTTGGATGGTTATCAGTGCTGCCGTGGTGCGGCCCCCTATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022293.14 |
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| 3UTR CCA 72 bp | GTATCCTTGTATTTTATTGTAATCTCAAAGACCTCGTaGATTATGCTAGGGACACAAGGAATTTGGTTGCAC | + |
|
Preference number: 3 (lower is better) Translates to: VSLYFIVISKTS*IMLGTQGIWLH Trigger: GTGCAACCAAATTCCTTGTGTCCCTAGCATAATCCACGAGGTCTTTGAGATTACAATAAAATACAAGGATAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022293.14 |
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| CDS-3UTR CCA 90 bp | TCCTTTGATGTGATCACCTTCTGGGGGAAGGAAGGGGAGCCTGCTGGTCGCATGTGTTCGGTGAAAAGGTaGTGTCAAAAGTCAGTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SFDVITFWGKEGEPAGRMCSVKR*CQKSVS Trigger: TGAAACTGACTTTTGACACCACCTTTTCACCGAACA...CATGCGACCAGCAGGCTCCCCTTCCTTCCCCCAGAAGGTGATCACATCAAAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000022293.14 |
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| CDS-3UTR CAA 90 bp | TCCTTTGATGTGATCACCTTCTGGGGGAAGGAAGGGGAGCCTGCTGGTCGCATGCCAATTAAACTAGAGTaGTTGACCTTTGCAGAGATA | + |
|
Preference number: 5 (lower is better) Translates to: SFDVITFWGKEGEPAGRMPIKLE*LTFAEI Trigger: TATCTCTGCAAAGGTCAACAACTCTAGTTTAATTGG...CATGCGACCAGCAGGCTCCCCTTCCTTCCCCCAGAAGGTGATCACATCAAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022293.14 |
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