Pregenerated sensors for VDAC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020402

Ensembl transcript IDs: ENSMUST00000102758.8, ENSMUST00000125694.8

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	GGAAGTCACAATTTCATCTGGGGACTGGATACAGATTTACAAAGGACCCACATGGGACCCTTTCTGGAATaGGGTTTCTGCTGTACCTCT	+
Preference number: 2 (lower is better) Translates to: GSHNFIWGLDTDLQRTHMGPFLE*GFCCTS Trigger: AGAGGTACAGCAGAAACCCCATTCCAGAAAGGGTCC...CATGTGGGTCCTTTGTAAATCTGTATCCAGTCCCCAGATGAAATTGTGACTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
3UTR-3UTR TCA 90 bp	TGCTCGGGAAGTCACAATTTCATCTGGGGACTGGATACAGATTTACAAAGGACCTTTCTGCTGTACCTCTaGAATGGTAAACACCTTAAA	+
Preference number: 2 (lower is better) Translates to: CSGSHNFIWGLDTDLQRTFLLYL*NGKHLK Trigger: TTTAAGGTGTTTACCATTTCAGAGGTACAGCAGAAA...GGTCCTTTGTAAATCTGTATCCAGTCCCCAGATGAAATTGTGACTTCCCGAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
3UTR CCA 72 bp	AAGGACCCACATGTTCCCAGCTTTCCACTTGTAGCCTaGCATCTCTACAGGGGCTCCTCCCCAACCCACGCC	+
Preference number: 3 (lower is better) Translates to: KDPHVPSFPLVA*HLYRGSSPTHA Trigger: GGCGTGGGTTGGGGAGGAGCCCCTGTAGAGATGCCAGGCTACAAGTGGAAAGCTGGGAACATGTGGGTCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
3UTR TCA 72 bp	GAGGAGTCAGTTGAGATCCCTAGTGTTGTCAGGGTGTaGCCACAATCACCGCCCAGCTCAGAGCCGGAGAAC	+
Preference number: 3 (lower is better) Translates to: EESVEIPSVVRV*PQSPPSSEPEN Trigger: GTTCTCCGGCTCTGAGCTGGGCGGTGATTGTGGTCACACCCTGACAACACTAGGGATCTCAACTGACTCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
3UTR CCA 72 bp	ACGCAGGTGTGTACATGCTTCCGAGCAGATAGGATCTaGACACCAGGGTTCGATGCTCGGGAAGTCACAATT	+
Preference number: 3 (lower is better) Translates to: TQVCTCFRADRI*TPGFDAREVTI Trigger: AATTGTGACTTCCCGAGCATCGAACCCTGGTGTCCAGATCCTATCTGCTCGGAAGCATGTACACACCTGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
3UTR CCA 72 bp	AATGGTAAACACCTTAAAGCCGAGTCATCCTTAGCCTaGAGGTCTAACGTGGTATTTATCAACTCTCGCATC	+
Preference number: 3 (lower is better) Translates to: NGKHLKAESSLA*RSNVVFINSRI Trigger: GATGCGAGAGTTGATAAATACCACGTTAGACCTCCAGGCTAAGGATGACTCGGCTTTAAGGTGTTTACCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
CDS-3UTR TCA 90 bp	CCACTTGTAGCCTGGCATCTCTACAGGGGCTCCTCCCCAACCCACGCCTACAGCCTGACAACGTCAGTTTaGTACCTGGTTTTAGGGTCT	+
Preference number: 4 (lower is better) Translates to: PLVAWHLYRGSSPTHAYSLTTSV*YLVLGS Trigger: AGACCCTAAAACCAGGTATCAAACTGACGTTGTCAG...GCTGTAGGCGTGGGTTGGGGAGGAGCCCCTGTAGAGATGCCAGGCTACAAGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
CDS-3UTR GCA 90 bp	CTAGAGTTGTTCACTTTGGCAGCCAGGTCCCAGCACATACTTGCTATGTGCCTTCATCCCTGGCGGACTTaGCAAGATCGGCGTATGTGG	+
Preference number: 4 (lower is better) Translates to: LELFTLAARSQHILAMCLHPWRT*QDRRMW Trigger: CCACATACGCCGATCTTGGCAAGTCCGCCAGGGATG...AAGGCACATAGCAAGTATGTGCTGGGACCTGGCTGCCAAAGTGAACAACTCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125694.8
CDS-3UTR GCA 90 bp	GGAAGTCACAATTTCATCTGGGGACTGGATACAGATTTACAAAGGACCCACATGCATCCCTGGCGGACTTaGCAAGATCGGCGTATGTGG	+
Preference number: 4 (lower is better) Translates to: GSHNFIWGLDTDLQRTHMHPWRT*QDRRMW Trigger: CCACATACGCCGATCTTGGCAAGTCCGCCAGGGATG...CATGTGGGTCCTTTGTAAATCTGTATCCAGTCCCCAGATGAAATTGTGACTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
CDS-3UTR CAA 90 bp	GTTGTTCACTTTGGCAGCCAGGTCCCAGCACATACTTGCTATGTGCCTTTAAGGACGTCACAGCCGAGGTaGATGTGCTCCCTCTTGTAC	+
Preference number: 5 (lower is better) Translates to: VVHFGSQVPAHTCYVPLRTSQPR*MCSLLY Trigger: GTACAAGAGGGAGCACATCAACCTCGGCTGTGACGT...CCTTAAAGGCACATAGCAAGTATGTGCTGGGACCTGGCTGCCAAAGTGAACAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125694.8
CDS-3UTR CAA 90 bp	TCCTTAGCCTGGAGGTCTAACGTGGTATTTATCAACTCTCGCATCCCCAACATAACGTCACAGCCGAGGTaGATGTGCTCCCTCTTGTAC	+
Preference number: 5 (lower is better) Translates to: SLAWRSNVVFINSRIPNITSQPR*MCSLLY Trigger: GTACAAGAGGGAGCACATCAACCTCGGCTGTGACGT...TATGTTGGGGATGCGAGAGTTGATAAATACCACGTTAGACCTCCAGGCTAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
CDS-3UTR CAA 90 bp	TGCTCGGGAAGTCACAATTTCATCTGGGGACTGGATACAGATTTACAAAGGACCCCAATCAGGCTAGAGTaGTTCACTTTGGCCGAAAAG	+
Preference number: 5 (lower is better) Translates to: CSGSHNFIWGLDTDLQRTPIRLE*FTLAEK Trigger: CTTTTCGGCCAAAGTGAACAACTCTAGCCTGATTGG...GGTCCTTTGTAAATCTGTATCCAGTCCCCAGATGAAATTGTGACTTCCCGAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102758.8
CDS-3UTR CAA 90 bp	GGAAGTCACAATTTCATCTGGGGACTGGATACAGATTTACAAAGGACCCACATGGCTGACAACGTCAGTTaGATACCTGGTTTTAGGGTC	+
Preference number: 5 (lower is better) Translates to: GSHNFIWGLDTDLQRTHMADNVS*IPGFRV Trigger: GACCCTAAAACCAGGTATCAAACTGACGTTGTCAGC...CATGTGGGTCCTTTGTAAATCTGTATCCAGTCCCCAGATGAAATTGTGACTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102758.8