Pregenerated sensors for VCPKMT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049882Ensembl transcript IDs: ENSMUST00000058639.11, ENSMUST00000238220.2, ENSMUST00000238784.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACCCAGGATGTTGCGGGGCGTGGCTAAGATGGAGAAGCGCTTCATaGTGGCGGTTTCTGACCACAGCTCAGCACACAGACAAGAGCCAG | + |
|
Preference number: 1 (lower is better) Translates to: YPGCCGAWLRWRSAS*WRFLTTAQHTDKSQ Trigger: CTGGCTCTTGTCTGTGTGCTGAGCTGTGGTCAGAAACCGCCATCATGAAGCGCTTCTCCATCTTAGCCACGCCCCGCAACATCCTGGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238220.2 |
||
| 3UTR CCA 90 bp | GCCCACAGGTGGGCGGGCGGGTGGGCAGGCAGACATTTCACATTGTaGGCAGTCCAAAGTAGTTGTCATCCATGTACCAGATCTCTAAGG | + |
|
Preference number: 1 (lower is better) Translates to: AHRWAGGWAGRHFTL*AVQSSCHPCTRSLR Trigger: CCTTAGAGATCTGGTACATGGATGACAACTACTTTGGACTGCCCACAATGTGAAATGTCTGCCTGCCCACCCGCCCGCCCACCTGTGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR TCA 90 bp | GTGAGGCAGTCTTCCATGCGGTATGCACATGCTCCGTTCACATCTTaGCCTTACCCAGGATGTTGCGGGGCGTGGCTAAGATGGAGAAGC | + |
|
Preference number: 1 (lower is better) Translates to: VRQSSMRYAHAPFTS*PYPGCCGAWLRWRS Trigger: GCTTCTCCATCTTAGCCACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGTGCATACCGCATGGAAGACTGCCTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR GCA 90 bp | CATGCTGGAGAAATCTGTGAGGCAGTCTTCCATGCGGTATGCACATaGTCCGTTCACATCTTGACCTTACCCAGGATGTTGCGGGGCGTG | + |
|
Preference number: 1 (lower is better) Translates to: HAGEICEAVFHAVCT*SVHILTLPRMLRGV Trigger: CACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGTGCATACCGCATGGAAGACTGCCTCACAGATTTCTCCAGCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR CAA 90 bp | TCAGCCCACAGGTGGGCGGGCGGGTGGGCAGGCAGACATTTCACATaGTGGGCAGTCCAAAGTAGTTGTCATCCATGTACCAGATCTCTA | + |
|
Preference number: 2 (lower is better) Translates to: SAHRWAGGWAGRHFT*WAVQSSCHPCTRSL Trigger: TAGAGATCTGGTACATGGATGACAACTACTTTGGACTGCCCACAATGTGAAATGTCTGCCTGCCCACCCGCCCGCCCACCTGTGGGCTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR CAA 90 bp | GCGGTATGCACATGCTCCGTTCACATCTTGACCTTACCCAGGATGTaGCGGGGCGTGGCTAAGATGGAGAAGCGCTTCATGATGGCGGTT | + |
|
Preference number: 2 (lower is better) Translates to: AVCTCSVHILTLPRM*RGVAKMEKRFMMAV Trigger: AACCGCCATCATGAAGCGCTTCTCCATCTTAGCCACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGTGCATACCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238220.2 |
||
| 3UTR TCA 72 bp | TGTTGCGGGGCGTGGCTAAGATGGAGAAGCGCTTCATaGTGGCGGTTTCTGACCACAGCTCAGCACACAGAC | + |
|
Preference number: 3 (lower is better) Translates to: CCGAWLRWRSAS*WRFLTTAQHTD Trigger: GTCTGTGTGCTGAGCTGTGGTCAGAAACCGCCATCATGAAGCGCTTCTCCATCTTAGCCACGCCCCGCAACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238220.2 |
||
| 3UTR TCA 72 bp | TCTTCCATGCGGTATGCACATGCTCCGTTCACATCTTaGCCTTACCCAGGATGTTGCGGGGCGTGGCTAAGA | + |
|
Preference number: 3 (lower is better) Translates to: SSMRYAHAPFTS*PYPGCCGAWLR Trigger: TCTTAGCCACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGTGCATACCGCATGGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR GCA 72 bp | GCTGGAGAAATCTGTGAGGCAGTCTTCCATGCGGTATaGACATGCTCCGTTCACATCTTGACCTTACCCAGG | + |
|
Preference number: 3 (lower is better) Translates to: AGEICEAVFHAV*TCSVHILTLPR Trigger: CCTGGGTAAGGTCAAGATGTGAACGGAGCATGTGCATACCGCATGGAAGACTGCCTCACAGATTTCTCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR TCA 72 bp | TGTACCAGATCTCTAAGGACATGCTGGAGAAATCTGTaGGGCAGTCTTCCATGCGGTATGCACATGCTCCGT | + |
|
Preference number: 3 (lower is better) Translates to: CTRSLRTCWRNL*GSLPCGMHMLR Trigger: ACGGAGCATGTGCATACCGCATGGAAGACTGCCTCACAGATTTCTCCAGCATGTCCTTAGAGATCTGGTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR GCA 72 bp | GAAATCTGTGAGGCAGTCTTCCATGCGGTATGCACATaGTCCGTTCACATCTTGACCTTACCCAGGATGTTG | + |
|
Preference number: 3 (lower is better) Translates to: EICEAVFHAVCT*SVHILTLPRML Trigger: CAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGTGCATACCGCATGGAAGACTGCCTCACAGATTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR-3UTR CAA 90 bp | GATGGAGAAGCGCTTCATGATGGCGGTTTTGGCTTTTTCTTTCTGATGTACACACTGGATTTTTCCCCATaGTACGTTGTTCGTAACAAC | + |
|
Preference number: 3 (lower is better) Translates to: DGEALHDGGFGFFFLMYTLDFSP*YVVRNN Trigger: GTTGTTACGAACAACGTACAATGGGGAAAAATCCAG...TGTGTACATCAGAAAGAAAAAGCCAAAACCGCCATCATGAAGCGCTTCTCCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000238784.2 |
||
| 3UTR TCA 72 bp | ATAGTATATACAGTCTGCCATCAATATGTAGTCTGGTaGCATCAAGTCTTCTATGTCTTCACCCCTTGGCTT | + |
|
Preference number: 3 (lower is better) Translates to: IVYTVCHQYVVW*HQVFYVFTPWL Trigger: AAGCCAAGGGGTGAAGACATAGAAGACTTGATGTCACCAGACTACATATTGATGGCAGACTGTATATACTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238220.2 |
||
| CDS-3UTR GCA 90 bp | GGTATGCACATGCTCCGTTCACATCTTGACCTTACCCAGGATGTTGCGGGGCGTCCCCCGGAGCCGTACTaGTGCAGCCGAAGCACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: GMHMLRSHLDLTQDVAGRPPEPY*CSRSTV Trigger: GACAGTGCTTCGGCTGCAGCAGTACGGCTCCGGGGG...ACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGTGCATACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 ENSMUST00000238784.2 |
||
| CDS-3UTR GCA 90 bp | ACATGCTCCGTTCACATCTTGACCTTACCCAGGATGTTGCGGGGCGTGGCTAAGCCCCCGGAGCCGTACTaGTGCAGCCGAAGCACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: TCSVHILTLPRMLRGVAKPPEPY*CSRSTV Trigger: GACAGTGCTTCGGCTGCAGCAGTACGGCTCCGGGGG...CTTAGCCACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 ENSMUST00000238784.2 |
||
| CDS-3UTR CCA 90 bp | TACGTTAGATTTCAGCCCACAGGTGGGCGGGCGGGTGGGCAGGCAGACATTTCAATTTGGAAAGGACGATaGCGGCGTCCCACACAACGC | + |
|
Preference number: 4 (lower is better) Translates to: YVRFQPTGGRAGGQADISIWKGR*RRPTQR Trigger: GCGTTGTGTGGGACGCCGCCATCGTCCTTTCCAAAT...TGAAATGTCTGCCTGCCCACCCGCCCGCCCACCTGTGGGCTGAAATCTAACGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| CDS-3UTR GCA 90 bp | TGTGAGGCAGTCTTCCATGCGGTATGCACATGCTCCGTTCACATCTTGACCTTACCCCCGGAGCCGTACTaGTGCAGCCGAAGCACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: CEAVFHAVCTCSVHILTLPPEPY*CSRSTV Trigger: GACAGTGCTTCGGCTGCAGCAGTACGGCTCCGGGGG...TAAGGTCAAGATGTGAACGGAGCATGTGCATACCGCATGGAAGACTGCCTCACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| CDS-3UTR CCA 90 bp | TTAGATTTCAGCCCACAGGTGGGCGGGCGGGTGGGCAGGCAGACATTTCACATTATTTGGAAAGGACGATaGCGGCGTCCCACACAACGC | + |
|
Preference number: 4 (lower is better) Translates to: LDFSPQVGGRVGRQTFHIIWKGR*RRPTQR Trigger: GCGTTGTGTGGGACGCCGCCATCGTCCTTTCCAAAT...AATGTGAAATGTCTGCCTGCCCACCCGCCCGCCCACCTGTGGGCTGAAATCTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR CAA 72 bp | AGGTGGGCGGGCGGGTGGGCAGGCAGACATTTCACATaGTGGGCAGTCCAAAGTAGTTGTCATCCATGTACC | + |
|
Preference number: 4 (lower is better) Translates to: RWAGGWAGRHFT*WAVQSSCHPCT Trigger: GGTACATGGATGACAACTACTTTGGACTGCCCACAATGTGAAATGTCTGCCTGCCCACCCGCCCGCCCACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| 3UTR CAA 72 bp | ACATGCTCCGTTCACATCTTGACCTTACCCAGGATGTaGCGGGGCGTGGCTAAGATGGAGAAGCGCTTCATG | + |
|
Preference number: 4 (lower is better) Translates to: TCSVHILTLPRM*RGVAKMEKRFM Trigger: CATGAAGCGCTTCTCCATCTTAGCCACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000238220.2 ENSMUST00000238784.2 |
||
| CDS-3UTR GCA 90 bp | TTAGATTTCAGCCCACAGGTGGGCGGGCGGGTGGGCAGGCAGACATTTCACATTAAGTCAAAGTCTAGCTaGAGGAGCTCAAAATACTTC | + |
|
Preference number: 4 (lower is better) Translates to: LDFSPQVGGRVGRQTFHIKSKSS*RSSKYF Trigger: GAAGTATTTTGAGCTCCTGCAGCTAGACTTTGACTT...AATGTGAAATGTCTGCCTGCCCACCCGCCCGCCCACCTGTGGGCTGAAATCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058639.11 |
||
| CDS-3UTR CCA 90 bp | GATGGAGAAGCGCTTCATGATGGCGGTTTTGGCTTTTTCTTTCTGATGTACACAATTTGGAAAGGACGATaGCGGCGTCCCACACAACGC | + |
|
Preference number: 4 (lower is better) Translates to: DGEALHDGGFGFFFLMYTIWKGR*RRPTQR Trigger: GCGTTGTGTGGGACGCCGCCATCGTCCTTTCCAAAT...TGTGTACATCAGAAAGAAAAAGCCAAAACCGCCATCATGAAGCGCTTCTCCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000238784.2 |
||
| CDS-3UTR GCA 90 bp | ACATGCTCCGTTCACATCTTGACCTTACCCAGGATGTTGCGGGGCGTGGCTAAGGAACCAGTCACAAGATaGTTGTTCATATCAATATTC | + |
|
Preference number: 4 (lower is better) Translates to: TCSVHILTLPRMLRGVAKEPVTR*LFISIF Trigger: GAATATTGATATGAACAAGCATCTTGTGACTGGTTC...CTTAGCCACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238784.2 |
||
| CDS-3UTR TCA 90 bp | TGTGAGGCAGTCTTCCATGCGGTATGCACATGCTCCGTTCACATCTTGACCTTACTGATGTACACAATATaGATGTCTTCACTTCGGTAT | + |
|
Preference number: 4 (lower is better) Translates to: CEAVFHAVCTCSVHILTLLMYTI*MSSLRY Trigger: ATACCGAAGTGAAGACATTCATATTGTGTACATCAG...TAAGGTCAAGATGTGAACGGAGCATGTGCATACCGCATGGAAGACTGCCTCACA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058639.11 |
||
| CDS-3UTR GCA 90 bp | GTCTTCCATGCGGTATGCACATGCTCCGTTCACATCTTGACCTTACCCAGGATGGAACCAGTCACAAGATaGTTGTTCATATCAATATTC | + |
|
Preference number: 4 (lower is better) Translates to: VFHAVCTCSVHILTLPRMEPVTR*LFISIF Trigger: GAATATTGATATGAACAAGCATCTTGTGACTGGTTC...CATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGTGCATACCGCATGGAAGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058639.11 |
||
| CDS GCA 90 bp | GCGGCGTCCCACACAACGCAACCCACGCCCCCGGAGCCGTACTGCTaGAGCCGAAGCACTGTCCCATCCCGCTTCTCCAGAACCCGCACA | + |
|
Preference number: 5 (lower is better) Translates to: AASHTTQPTPPEPYC*SRSTVPSRFSRTRT Trigger: TGTGCGGGTTCTGGAGAAGCGGGATGGGACAGTGCTTCGGCTGCAGCAGTACGGCTCCGGGGGCGTGGGTTGCGTTGTGTGGGACGCCGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 ENSMUST00000238784.2 |
||
| CDS GCA 90 bp | ATGGCGGCGTCCCACACAACGCAACCCACGCCCCCGGAGCCGTACTaGTGCAGCCGAAGCACTGTCCCATCCCGCTTCTCCAGAACCCGC | + |
|
Preference number: 5 (lower is better) Translates to: MAASHTTQPTPPEPY*CSRSTVPSRFSRTR Trigger: GCGGGTTCTGGAGAAGCGGGATGGGACAGTGCTTCGGCTGCAGCAGTACGGCTCCGGGGGCGTGGGTTGCGTTGTGTGGGACGCCGCCAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 ENSMUST00000238784.2 |
||
| CDS-3UTR CAA 90 bp | GCGGGCGGGTGGGCAGGCAGACATTTCACATTGTGGGCAGTCCAAAGTAGTTGTGGCGTCTCCAGGTATTaGGAAAGGACGATGGCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: AGGWAGRHFTLWAVQSSCGVSRY*ERTMAA Trigger: CGCCGCCATCGTCCTTTCCAAATACCTGGAGACGCC...ACAACTACTTTGGACTGCCCACAATGTGAAATGTCTGCCTGCCCACCCGCCCGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| CDS-3UTR CAA 90 bp | TGCTCCGTTCACATCTTGACCTTACCCAGGATGTTGCGGGGCGTGGCTAAGATGGGCGTCTCCAGGTATTaGGAAAGGACGATGGCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: CSVHILTLPRMLRGVAKMGVSRY*ERTMAA Trigger: CGCCGCCATCGTCCTTTCCAAATACCTGGAGACGCC...CATCTTAGCCACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 ENSMUST00000238784.2 |
||
| CDS-3UTR CAA 90 bp | GCGGGTGGGCAGGCAGACATTTCACATTGTGGGCAGTCCAAAGTAGTTGTCATCGGCGTCTCCAGGTATTaGGAAAGGACGATGGCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: AGGQADISHCGQSKVVVIGVSRY*ERTMAA Trigger: CGCCGCCATCGTCCTTTCCAAATACCTGGAGACGCC...GATGACAACTACTTTGGACTGCCCACAATGTGAAATGTCTGCCTGCCCACCCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 |
||
| CDS-3UTR CAA 90 bp | ACATGCTCCGTTCACATCTTGACCTTACCCAGGATGTTGCGGGGCGTGGCTAAGCTGGATTTTTCCCCATaGTACGTTGTTCGTAACAAC | + |
|
Preference number: 5 (lower is better) Translates to: TCSVHILTLPRMLRGVAKLDFSP*YVVRNN Trigger: GTTGTTACGAACAACGTACAATGGGGAAAAATCCAG...CTTAGCCACGCCCCGCAACATCCTGGGTAAGGTCAAGATGTGAACGGAGCATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058639.11 |
||
| CDS GCA 72 bp | TCCCACACAACGCAACCCACGCCCCCGGAGCCGTACTaGTGCAGCCGAAGCACTGTCCCATCCCGCTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SHTTQPTPPEPY*CSRSTVPSRFS Trigger: GGAGAAGCGGGATGGGACAGTGCTTCGGCTGCAGCAGTACGGCTCCGGGGGCGTGGGTTGCGTTGTGTGGGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 ENSMUST00000238784.2 |
||
| CDS GCA 72 bp | CACACAACGCAACCCACGCCCCCGGAGCCGTACTGCTaGAGCCGAAGCACTGTCCCATCCCGCTTCTCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: HTTQPTPPEPYC*SRSTVPSRFSR Trigger: TCTGGAGAAGCGGGATGGGACAGTGCTTCGGCTGCAGCAGTACGGCTCCGGGGGCGTGGGTTGCGTTGTGTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000058639.11 ENSMUST00000238220.2 ENSMUST00000238784.2 |
||