Pregenerated sensors for VCAM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027962Ensembl transcript IDs: ENSMUST00000029574.13, ENSMUST00000196309.2, ENSMUST00000196449.5
Found 145 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTCCAGTCACTTCAACGATGGGGACTTGTCAAGCAGAACTTTTCTaGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGC | + |
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Preference number: 1 (lower is better) Translates to: IPVTSTMGTCQAELF*LAPCIQQGIKQPLC Trigger: GCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAGTTCTGCTTGACAAGTCCCCATCGTTGAAGTGACTGGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| 3UTR TCA 90 bp | TGCATTATCAAAATACTTTATAGTCATTCAGGGTTGAAAGCTGAGTaGTCAGGACTAACATTCAAGTGTCCAAAGTGTTCTCTAGCTTCC | + |
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Preference number: 1 (lower is better) Translates to: CIIKILYSHSGLKAE*SGLTFKCPKCSLAS Trigger: GGAAGCTAGAGAACACTTTGGACACTTGAATGTTAGTCCTGATCACTCAGCTTTCAACCCTGAATGACTATAAAGTATTTTGATAATGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR TCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATAGGGTTCTGGGAAGTCTaGATGCATGGCTTGGTTTGT | + |
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Preference number: 2 (lower is better) Translates to: RSDLHMECCYSKQPRDGIGFWEV*MHGLVC Trigger: ACAAACCAAGCCATGCATTCAGACTTCCCAGAACCC...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| 3UTR CAA 90 bp | TTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTaGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAATGCATGG | + |
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Preference number: 2 (lower is better) Translates to: FLVSSLHSARDQAAT*PSLLRRVLGSLNAW Trigger: CCATGCATTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| 3UTR-3UTR TCA 90 bp | TCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATAATTCTTTGCCTTCTTTACTaGGAAGGGTTCTGGGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: SDLHMECCYSKQPRDGIILCLLY*EGFWEV Trigger: GACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAG...AATTATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| 3UTR-3UTR CCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATACAAGCAGAACTTTTCTaGTTAGCTCCTTGCATTCAG | + |
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Preference number: 2 (lower is better) Translates to: RSDLHMECCYSKQPRDGIQAELF*LAPCIQ Trigger: CTGAATGCAAGGAGCTAACCAGAAAAGTTCTGCTTG...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| 3UTR-3UTR TCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCTCTTCTCTGATCATTTaGGAACAGCAGCCACCCACC | + |
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Preference number: 2 (lower is better) Translates to: QNEFFPHLKQGQSFQNATSSLII*EQQPPT Trigger: GGTGGGTGGCTGCTGTTCTCAAATGATCAGAGAAGA...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR TCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATCTGGACAGAAGCTCTTaGAAGTCGCTGAAATGCCCT | + |
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Preference number: 2 (lower is better) Translates to: LASRHSDSDEMTYFERKNLDRSS*KSLKCP Trigger: AGGGCATTTCAGCGACTTTCAAGAGCTTCTGTCCAG...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR TCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATGCTCTTGAAAGTCGCTaGAATGCCCTTCTAACTTCA | + |
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Preference number: 2 (lower is better) Translates to: LASRHSDSDEMTYFERKNALESR*NALLTS Trigger: TGAAGTTAGAAGGGCATTTCAGCGACTTTCAAGAGC...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR GCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATCCAATCATTTCAGAATaGAACCACCTCAGGACAGAC | + |
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Preference number: 2 (lower is better) Translates to: LASRHSDSDEMTYFERKNPIISE*NHLRTD Trigger: GTCTGTCCTGAGGTGGTTGCATTCTGAAATGATTGG...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR TCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATTTCCTGTGCCCAGAATaGATTTTTCCCCCATTTGAA | + |
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Preference number: 2 (lower is better) Translates to: LASRHSDSDEMTYFERKNFLCPE*IFPPFE Trigger: TTCAAATGGGGGAAAAATTCATTCTGGGCACAGGAA...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR TCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCAAAGAAAGAACCATTTaGCCCCATGCAAATGATGAA | + |
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Preference number: 2 (lower is better) Translates to: QNEFFPHLKQGQSFQNATKERTI*PHANDE Trigger: TTCATCATTTGCATGGGGTCAAATGGTTCTTTCTTT...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR GCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATATTCAAAGGCACAAATaGAAACACAGAGAGTTCCTG | + |
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Preference number: 2 (lower is better) Translates to: LASRHSDSDEMTYFERKNIQRHK*KHREFL Trigger: CAGGAACTCTCTGTGTTTGCATTTGTGCCTTTGAAT...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR GCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATTGTACCAGGAAAAGTTaGCGTTCTCATTTTAGTTTG | + |
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Preference number: 2 (lower is better) Translates to: LASRHSDSDEMTYFERKNCTRKS*RSHFSL Trigger: CAAACTAAAATGAGAACGGCAACTTTTCCTGGTACA...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR GCA 72 bp | TTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATaGAACCACCTCAGGACAGACAGCAAGCTTTCCACA | + |
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Preference number: 3 (lower is better) Translates to: FPPFETGPIISE*NHLRTDSKLST Trigger: TGTGGAAAGCTTGCTGTCTGTCCTGAGGTGGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR CCA 72 bp | ACTTCAACGATGGGGACTTGTCAAGCAGAACTTTTCTaGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TSTMGTCQAELF*LAPCIQQGIKQ Trigger: CTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAGTTCTGCTTGACAAGTCCCCATCGTTGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| 3UTR TCA 72 bp | TCTGAATTCCTGGGAGTGGCTAGACAACTCTGCAAGTaGCAAATGAATCCCCAAAGAACGTCACTAGAGTGT | + |
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Preference number: 3 (lower is better) Translates to: SEFLGVARQLCK*QMNPQRTSLEC Trigger: ACACTCTAGTGACGTTCTTTGGGGATTCATTTGTCACTTGCAGAGTTGTCTAGCCACTCCCAGGAATTCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR-3UTR CAA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATATCTTCTCTGATCATTaGAGAACAGCAGCCACCCAC | + |
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Preference number: 3 (lower is better) Translates to: LASRHSDSDEMTYFERKNIFSDH*RTAATH Trigger: GTGGGTGGCTGCTGTTCTCAAATGATCAGAGAAGAT...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| 3UTR TCA 72 bp | AAAATACTTTATAGTCATTCAGGGTTGAAAGCTGAGTaGTCAGGACTAACATTCAAGTGTCCAAAGTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: KILYSHSGLKAE*SGLTFKCPKCS Trigger: AGAACACTTTGGACACTTGAATGTTAGTCCTGATCACTCAGCTTTCAACCCTGAATGACTATAAAGTATTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| CDS-3UTR GCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATAGGCATCCTGCAGCTGTaGCTGGCGGATGGTGTACGA | + |
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Preference number: 4 (lower is better) Translates to: RSDLHMECCYSKQPRDGIGILQL*LADGVR Trigger: TCGTACACCATCCGCCAGGCACAGCTGCAGGATGCC...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATATGGTCAGAACGGACTTaGACCCCTCCGTCCTCACCT | + |
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Preference number: 4 (lower is better) Translates to: RSDLHMECCYSKQPRDGIWSERT*TPPSSP Trigger: AGGTGAGGACGGAGGGGTCCAAGTCCGTTCTGACCA...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR TCA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCCTTACCACCCCATTaGGGGGACTGTCTGTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKSLPPH*GDCLSG Trigger: CCCAGACAGACAGTCCCCTCAATGGGGTGGTAAGGA...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR GCA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGCGAATCCCCAACTTGTaGAGCCACCTGAGATCCGGG | + |
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Preference number: 4 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKRIPNL*SHLRSG Trigger: CCCGGATCTCAGGTGGCTGCACAAGTTGGGGATTCG...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAATCCTGCAGCTGTGCCTaGCGGATGGTGTACGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: GSSSHFAFFTEKGSGKSESCSCA*RMVYEP Trigger: TGGCTCGTACACCATCCGCCAGGCACAGCTGCAGGA...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR TCA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGACAGCACCACCCTCTTaGAGCCTTGTGGAGGGATGT | + |
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Preference number: 4 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKTAPPS*SLVEGC Trigger: ACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGT...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR GCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTTATATGCCGGCATCCTaGAGCTGTGCCTGGCGGATG | + |
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Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSYMPAS*SCAWRM Trigger: CATCCGCCAGGCACAGCTGCAGGATGCCGGCATATA...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR TCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTAGGGGGCCACTGAATTaGATCTCTGGATCCTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSRGPLN*ISGSLG Trigger: CCCCAAGGATCCAGAGATTCAATTCAGTGGCCCCCT...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR TCA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTCCTCCAGGGGGCCACTaGATTGAATCTCTGGATCCT | + |
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Preference number: 4 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLPPGGH*IESLDP Trigger: AGGATCCAGAGATTCAATTCAGTGGCCCCCTGGAGG...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR TCA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGCCTTGGGGGCAACGTTaGCATAAAGAGGCTGTACAC | + |
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Preference number: 4 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKPWGQR*HKEAVH Trigger: GTGTACAGCCTCTTTATGTCAACGTTGCCCCCAAGG...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR GCA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGCCCAGAGCCACATGTTaGTGTGCACAGGTAAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKPRATC*CAQVRV Trigger: CACTCTTACCTGTGCACAGCAACATGTGGCTCTGGG...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR GCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATAATTCACACTCGTATATaGCGGCATCCTGCAGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: RSDLHMECCYSKQPRDGIIHTRI*RHPAAV Trigger: CACAGCTGCAGGATGCCGGCATATACGAGTGTGAAT...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR TCA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAAGAGGGTGGCATTTCCTaGGAGAAGCTGGAGAACTTC | + |
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Preference number: 4 (lower is better) Translates to: GSSSHFAFFTEKGSGKSEEGGIS*EKLENF Trigger: GAAGTTCTCCAGCTTCTCTCAGGAAATGCCACCCTC...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR TCA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTTGGATCTTCAGGGAATaGGTAGACCTCCACCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLWIFRE*VDLHLG Trigger: ACCCAGGTGGAGGTCTACTCATTCCCTGAAGATCCA...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR GCA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTTTTCCAGTGTCCTTTaGAGACAGGTCACAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKFSSVL*RQVTAH Trigger: GTGCGCTGTGACCTGTCTGCAAAGGACACTGGAAAA...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAACTGGTAGACCCTCGCTaGAACAGGTCATTGTCACAG | + |
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Preference number: 4 (lower is better) Translates to: GSSSHFAFFTEKGSGKSELVDPR*NRSLSQ Trigger: CTGTGACAATGACCTGTTCCAGCGAGGGTCTACCAG...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTGCTCCACAGGATTTTaGGAGCTGGTATCCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKCSTGF*ELVSHH Trigger: GTGATGGGATACCAGCTCCCAAAATCCTGTGGAGCA...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| 3UTR CAA 72 bp | AGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTaGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: SSLHSARDQAAT*PSLLRRVLGSL Trigger: CAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATAGAATCTCTGGATCCTTaGGGAAAGAGTAGATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: RSDLHMECCYSKQPRDGIESLDP*GKSRCP Trigger: TGGACATCTACTCTTTCCCCAAGGATCCAGAGATTC...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTCCTCTTGAAGCCTTGTaGAGGGATGTACAGAGATCG | + |
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Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSPLEAL*RDVQRS Trigger: CGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGG...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATAAGGGGACTGTCTGTCTaGGTTCTCCAAGAAAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: RSDLHMECCYSKQPRDGIRGLSV*VLQEKE Trigger: TTCTTTTTCTTGGAGAACCCAGACAGACAGTCCCCT...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAAACACAAGCGTGGATTTaGCCCCCTCATTCCTTACCA | + |
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Preference number: 4 (lower is better) Translates to: GSSSHFAFFTEKGSGKSETQAWI*PPHSLP Trigger: TGGTAAGGAATGAGGGGGCCAAATCCACGCTTGTGT...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR GCA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAACACTTTGGATTTCTGTaGCTCCACCAGACTGTACGA | + |
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Preference number: 4 (lower is better) Translates to: GSSSHFAFFTEKGSGKSEHFGFL*LHQTVR Trigger: TCGTACAGTCTGGTGGAGGCACAGAAATCCAAAGTG...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTCTCCAGCCTGTAAACTaGGTAAATGTCTGGAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLLQPVN*VNVWSQ Trigger: TTGGCTCCAGACATTTACCCAGTTTACAGGCTGGAG...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR GCA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAATATTACCAAGGAAGATaGGCAGTAGAGTGCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GSSSHFAFFTEKGSGKSEYYQGR*AVECKE Trigger: CTCCTTGCACTCTACTGCGCATCTTCCTTGGTAATA...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | TCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATAATTAGTGGGCTGTCTATCTaGGTTCTCCATGAGAACAAT | + |
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Preference number: 4 (lower is better) Translates to: SDLHMECCYSKQPRDGIISGLSI*VLHENN Trigger: ATTGTTCTCATGGAGAACCCAGATAGACAGCCCACT...AATTATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS-3UTR CCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATTGGTCAGAACGGACTTaGACCCCTCCGTCCTCACCT | + |
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Preference number: 4 (lower is better) Translates to: LASRHSDSDEMTYFERKNWSERT*TPPSSP Trigger: AGGTGAGGACGGAGGGGTCCAAGTCCGTTCTGACCA...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
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| CDS-3UTR CCA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTCACTCTGCCTCTGTTTaGGTTCAGATTCCATTTCAC | + |
|
Preference number: 4 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLHSASV*VQIPFH Trigger: GTGAAATGGAATCTGAACCCAAACAGAGGCAGAGTG...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR TCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATATCGATTTTAAAAGCTTaGGAGACTGCAAACAGTATC | + |
|
Preference number: 4 (lower is better) Translates to: RSDLHMECCYSKQPRDGISILKA*ETANSI Trigger: GATACTGTTTGCAGTCTCTCAAGCTTTTAAAATCGA...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR TCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATAGGGGGCCACTGAATTaGATCTCTGGATCCTTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LASRHSDSDEMTYFERKNRGPLN*ISGSLG Trigger: CCCCAAGGATCCAGAGATTCAATTCAGTGGCCCCCT...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR TCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATACAGCACCACCCTCTTaGAGCCTTGTGGAGGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: LASRHSDSDEMTYFERKNTAPPS*SLVEGC Trigger: ACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGT...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR GCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCCCCAGAGCCACATGTTaGTGTGCACAGGTAAGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: QNEFFPHLKQGQSFQNATPRATC*CAQVRV Trigger: CACTCTTACCTGTGCACAGCAACATGTGGCTCTGGG...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR GCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTCATTATCTAACTTCCTaGCCCAGAAAATCTCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSHYLTS*PRKSQE Trigger: CTCCTGAGATTTTCTGGGGCAGGAAGTTAGATAATG...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR GCA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTCATTATTTAGCTGTCTaGTCCACAGGATTTTGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLHYLAV*STGFWE Trigger: CTCCCAAAATCCTGTGGAGCAGACAGCTAAATAATG...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR GCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTCTTCACACACATAAATaGCGGAATCGTCCCTTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSLHTHK*RNRPFL Trigger: CAAAAAGGGACGATTCCGGCATTTATGTGTGTGAAG...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCCTGGTAGACCCTCGCTaGAACAGGTCATTGTCACAG | + |
|
Preference number: 4 (lower is better) Translates to: QNEFFPHLKQGQSFQNATLVDPR*NRSLSQ Trigger: CTGTGACAATGACCTGTTCCAGCGAGGGTCTACCAG...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CCA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATATCGTTTCCAAAATTTTaGTCTCTAGGGACTTTATGC | + |
|
Preference number: 4 (lower is better) Translates to: RSDLHMECCYSKQPRDGISFPKF*SLGTLC Trigger: GCATAAAGTCCCTAGAGACCAAAATTTTGGAAACGA...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR TCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTCTTTGTCATCTCTTCTaGAGAAAACTCCTGTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSLCHLF*RKLLSV Trigger: AACAGACAGGAGTTTTCTTCAGAAGAGATGACAAAG...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR TCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATGAGGGTGGCATTTCCTaGGAGAAGCTGGAGAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: LASRHSDSDEMTYFERKNEGGIS*EKLENF Trigger: GAAGTTCTCCAGCTTCTCTCAGGAAATGCCACCCTC...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTAGATCGTTGTATTCCTaGGAGAGATGTAGACTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSRSLYS*ERCRLV Trigger: TACAAGTCTACATCTCTCCCAGGAATACAACGATCT...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCCCTCTTGAAGCCTTGTaGAGGGATGTACAGAGATCG | + |
|
Preference number: 4 (lower is better) Translates to: QNEFFPHLKQGQSFQNATPLEAL*RDVQRS Trigger: CGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGG...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR TCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGATAATCAGTTCAACTaGTTTTCTGCTAATTCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSDNQFN*FSANSS Trigger: GCTGGAATTAGCAGAAAATCAGTTGAACTGATTATC...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR GCA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAAAAAAGCTTGAGAGACTaGAAACAGTATCCAAAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: GSSSHFAFFTEKGSGKSEKSLRD*KQYPKY Trigger: GTACTTTGGATACTGTTTGCAGTCTCTCAAGCTTTT...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR GCA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTCATGTCTCCTGTCTTTaGTTTCTTCTTCAGGATTAT | + |
|
Preference number: 4 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLHVSCL*FLLQDY Trigger: ATAATCCTGAAGAAGAAAGCAAAGACAGGAGACATG...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCCTCCAGCCTGTAAACTaGGTAAATGTCTGGAGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: QNEFFPHLKQGQSFQNATLQPVN*VNVWSQ Trigger: TTGGCTCCAGACATTTACCCAGTTTACAGGCTGGAG...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR GCA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTCATGTTAGCTTTTCTTaGAAAATAAACGATCATCCC | + |
|
Preference number: 4 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSHVSFS*KINDHP Trigger: GGGATGATCGTTTATTTTGCAAGAAAAGCTAACATG...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCAGTGGGCTGTCTATCTaGGTTCTCCATGAGAACAAT | + |
|
Preference number: 4 (lower is better) Translates to: QNEFFPHLKQGQSFQNATSGLSI*VLHENN Trigger: ATTGTTCTCATGGAGAACCCAGATAGACAGCCCACT...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CCA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTTTACTTCCAAACTCTTaGTTTCTAGAGACTTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLLLPNS*FLETLS Trigger: TGACAAAGTCTCTAGAAACCAAGAGTTTGGAAGTAA...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CCA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTAATTCAATCTCCAGATaGTCAAAGGGATACACATTA | + |
|
Preference number: 4 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLNSISR*SKGYTL Trigger: TAATGTGTATCCCTTTGACCATCTGGAGATTGAATT...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CCA 90 bp | TCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATAATTAAGCTGTATATCTTTTaGAGAGACTTGGATAATCAG | + |
|
Preference number: 4 (lower is better) Translates to: SDLHMECCYSKQPRDGIIKLYIF*RDLDNQ Trigger: CTGATTATCCAAGTCTCTCCAAAAGATATACAGCTT...AATTATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CCA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAATTTGACACTCTTAGATaGAAAGACTGTAAGCTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: GSSSHFAFFTEKGSGKSEFDTLR*KDCKLY Trigger: ATACAGCTTACAGTCTTTCCATCTAAGAGTGTCAAA...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR TCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATTGGCCATTAGTAATCTaGGACTTCATTCTCCCATCT | + |
|
Preference number: 4 (lower is better) Translates to: LASRHSDSDEMTYFERKNWPLVI*DFILPS Trigger: AGATGGGAGAATGAAGTCTCAGATTACTAATGGCCA...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCAGATCGTTGTATTCCTaGGAGAGATGTAGACTTGTA | + |
|
Preference number: 4 (lower is better) Translates to: QNEFFPHLKQGQSFQNATRSLYS*ERCRLV Trigger: TACAAGTCTACATCTCTCCCAGGAATACAACGATCT...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR TCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCTCGATTTTAAAAGCTTaGGAGACTGCAAACAGTATC | + |
|
Preference number: 4 (lower is better) Translates to: QNEFFPHLKQGQSFQNATSILKA*ETANSI Trigger: GATACTGTTTGCAGTCTCTCAAGCTTTTAAAATCGA...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR TCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATCTTTGTCATCTCTTCTaGAGAAAACTCCTGTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: LASRHSDSDEMTYFERKNLCHLF*RKLLSV Trigger: AACAGACAGGAGTTTTCTTCAGAAGAGATGACAAAG...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR TCA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCGACAGAGATAACATATaGAGTAGAAACTCTTGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: QNEFFPHLKQGQSFQNATDRDNI*SRNSWQ Trigger: TTGCCAAGAGTTTCTACTTCATATGTTATCTCTGTC...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| 3UTR CAA 72 bp | ATATTTTCAAAGATATTATTCAACACAGTGGCTAAGTaGTCCAAGTTCCGCCTATGCTACTGTGAGAACAGG | + |
|
Preference number: 4 (lower is better) Translates to: IFSKILFNTVAK*SKFRLCYCENR Trigger: CCTGTTCTCACAGTAGCATAGGCGGAACTTGGACAACTTAGCCACTGTGTTGAATAATATCTTTGAAAATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR GCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATAAAAGCTTGAGAGACTaGAAACAGTATCCAAAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: LASRHSDSDEMTYFERKNKSLRD*KQYPKY Trigger: GTACTTTGGATACTGTTTGCAGTCTCTCAAGCTTTT...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CCA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATTTACTTCCAAACTCTTaGTTTCTAGAGACTTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: LASRHSDSDEMTYFERKNLLPNS*FLETLS Trigger: TGACAAAGTCTCTAGAAACCAAGAGTTTGGAAGTAA...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS CCA 90 bp | TTGGACCCCTCCGTCCTCACCTTCGCGTTTAGTGGGCTGTCTATCTaGGTTCTCCATGAGAACAATGGTGACTCGCAGCCCGTAGTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LDPSVLTFAFSGLSI*VLHENNGDSQPVVL Trigger: CAGCACTACGGGCTGCGAGTCACCATTGTTCTCATGGAGAACCCAGATAGACAGCCCACTAAACGCGAAGGTGAGGACGGAGGGGTCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CCA 90 bp | CTAACTTCCTGCCCCAGAAAATCTCAGGAGCTGGTAGACCCTCGCTaGAACAGGTCATTGTCACAGCACCACCCTCTTGAAGCCTTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: LTSCPRKSQELVDPR*NRSLSQHHPLEALW Trigger: CCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAGGGTCTACCAGCTCCTGAGATTTTCTGGGGCAGGAAGTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS TCA 90 bp | GGTAGACCCTCGCTGGAACAGGTCATTGTCACAGCACCACCCTCTTaGAGCCTTGTGGAGGGATGTACAGAGATCGTTGTATTCCTGGGA | + |
|
Preference number: 5 (lower is better) Translates to: GRPSLEQVIVTAPPS*SLVEGCTEIVVFLG Trigger: TCCCAGGAATACAACGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAGGGTCTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS GCA 90 bp | GAGCCAACTTCAGTCTTAGATTCACACTCGTATATGCCGGCATCCTaGAGCTGTGCCTGGCGGATGGTGTACGAGCCATCCACAGACTTT | + |
|
Preference number: 5 (lower is better) Translates to: EPTSVLDSHSYMPAS*SCAWRMVYEPSTDF Trigger: AAAGTCTGTGGATGGCTCGTACACCATCCGCCAGGCACAGCTGCAGGATGCCGGCATATACGAGTGTGAATCTAAGACTGAAGTTGGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATACGCTGGAACAGGTCATaGTCACAGCACCACCCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: RSDLHMECCYSKQPRDGIRWNRS*SQHHPL Trigger: AAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCG...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 90 bp | CATGAGCTGGTCACCCTTGAACAGATCAATCTCCAGCCTGTAAACTaGGTAAATGTCTGGAGCCAAACACTTGACCGTGACCGGCTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: HELVTLEQINLQPVN*VNVWSQTLDRDRLP Trigger: GGGAAGCCGGTCACGGTCAAGTGTTTGGCTCCAGACATTTACCCAGTTTACAGGCTGGAGATTGATCTGTTCAAGGGTGACCAGCTCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CCA 90 bp | GAGGCTGCAGTTCCCCATTATTTAGCTGTCTGCTCCACAGGATTTTaGGAGCTGGTATCCCATCACTTGAGCAGGTCAGGTTCACAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: EAAVPHYLAVCSTGF*ELVSHHLSRSGSQD Trigger: GTCCTGTGAACCTGACCTGCTCAAGTGATGGGATACCAGCTCCCAAAATCCTGTGGAGCAGACAGCTAAATAATGGGGAACTGCAGCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 90 bp | ATTCACACTCGTATATGCCGGCATCCTGCAGCTGTGCCTGGCGGATaGTGTACGAGCCATCCACAGACTTTAATACCATGTCTCCTGTCT | + |
|
Preference number: 5 (lower is better) Translates to: IHTRICRHPAAVPGG*CTSHPQTLIPCLLS Trigger: AGACAGGAGACATGGTATTAAAGTCTGTGGATGGCTCGTACACCATCCGCCAGGCACAGCTGCAGGATGCCGGCATATACGAGTGTGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 90 bp | CGCTGGAACAGGTCATTGTCACAGCACCACCCTCTTGAAGCCTTGTaGAGGGATGTACAGAGATCGTTGTATTCCTGGGAGAGATGTAGA | + |
|
Preference number: 5 (lower is better) Translates to: RWNRSLSQHHPLEAL*RDVQRSLYSWERCR Trigger: TCTACATCTCTCCCAGGAATACAACGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS-3UTR CAA 90 bp | GGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGAATCCCAGAGCCACATGTaGCTGTGCACAGGTAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: GSSSHFAFFTEKGSGKSESQSHM*LCTGKS Trigger: ACTCTTACCTGTGCACAGCAACATGTGGCTCTGGGA...TTCAGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGATGAGCTGGTCACCCTaGAACAGATCAATCTCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKMSWSP*NRSISS Trigger: GCTGGAGATTGATCTGTTCAAGGGTGACCAGCTCAT...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTTCCAGTGTCCTTaGCAGACAGGTCACAGCGCA | + |
|
Preference number: 5 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLLFQCP*QTGHSA Trigger: TGCGCTGTGACCTGTCTGCAAAGGACACTGGAAAAG...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTCTGGTATCCCATCACTaGAGCAGGTCAGGTTCACAG | + |
|
Preference number: 5 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLLVSHH*SRSGSQ Trigger: CTGTGAACCTGACCTGCTCAAGTGATGGGATACCAG...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | CGTTCTGACCTGCATATGGAGTGCTGCTACTCTAAACAACCTCGCGACGGCATACATGGAGTCACCGATTaGAGCAATCGTTTTGTATTC | + |
|
Preference number: 5 (lower is better) Translates to: RSDLHMECCYSKQPRDGIHGVTD*SNRFVF Trigger: GAATACAAAACGATTGCTCAAATCGGTGACTCCATG...TATGCCGTCGCGAGGTTGTTTAGAGTAGCAGCACTCCATATGCAGGTCAGAACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS TCA 90 bp | ATGCACAAGTGGCCCACTCATTTTAATTACTGGATCTTCAGGGAATaGGTAGACCTCCACCTGGGTTCTCTTTTCCAGTGTCCTTTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: MHKWPTHFNYWIFRE*VDLHLGSLFQCPLQ Trigger: CTGCAAAGGACACTGGAAAAGAGAACCCAGGTGGAGGTCTACTCATTCCCTGAAGATCCAGTAATTAAAATGAGTGGGCCACTTGTGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS GCA 90 bp | GGATACACATTAGGGACTGTGCAGTTGACAGTGACAGGTCTCCCATaGACAAGTGGCCCACTCATTTTAATTACTGGATCTTCAGGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: GYTLGTVQLTVTGLP*TSGPLILITGSSGN Trigger: ATTCCCTGAAGATCCAGTAATTAAAATGAGTGGGCCACTTGTGCATGGGAGACCTGTCACTGTCAACTGCACAGTCCCTAATGTGTATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | CTTTTCTGGTTAGCTCCTTGCATTCAGCAAGGGATCAAGCAGCCACTTTGCCTTGATGTACAGAGATCGTaGTATTCCTGGGAGAGATGT | + |
|
Preference number: 5 (lower is better) Translates to: LFWLAPCIQQGIKQPLCLDVQRS*YSWERC Trigger: ACATCTCTCCCAGGAATACAACGATCTCTGTACATC...AAGGCAAAGTGGCTGCTTGATCCCTTGCTGAATGCAAGGAGCTAACCAGAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | AGCAAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGCCATGTCTCCTGTCTTaGCTTTCTTCTTCAGGATTA | + |
|
Preference number: 5 (lower is better) Translates to: SKGSSSHFAFFTEKGSGKPCLLS*LSSSGL Trigger: TAATCCTGAAGAAGAAAGCAAAGACAGGAGACATGG...CTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS GCA 90 bp | GATCATCCCGATGGCAGGTATTACCAAGGAAGATGCGCAGTAGAGTaGAAGGAGTTCGGGCGAAAAATAGTTCTTGTTATGTTCTTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: DHPDGRYYQGRCAVE*KEFGRKIVLVMFFS Trigger: GGAAAAGAACATAACAAGAACTATTTTTCGCCCGAACTCCTTGCACTCTACTGCGCATCTTCCTTGGTAATACCTGCCATCGGGATGATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCTCCCAGAGCCACATGTaGCTGTGCACAGGTAAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: QNEFFPHLKQGQSFQNATSQSHM*LCTGKS Trigger: ACTCTTACCTGTGCACAGCAACATGTGGCTCTGGGA...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CAA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATCGCTGGAACAGGTCATaGTCACAGCACCACCCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LASRHSDSDEMTYFERKNRWNRS*SQHHPL Trigger: AAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCG...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS GCA 90 bp | TGCAAAATAAACGATCATCCCGATGGCAGGTATTACCAAGGAAGATaGGCAGTAGAGTGCAAGGAGTTCGGGCGAAAAATAGTTCTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: CKINDHPDGRYYQGR*AVECKEFGRKIVLV Trigger: AACAAGAACTATTTTTCGCCCGAACTCCTTGCACTCTACTGCGCATCTTCCTTGGTAATACCTGCCATCGGGATGATCGTTTATTTTGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS GCA 90 bp | CTGTGCCTCCACCAGACTGTACGATCCTTTCATGTTAGCTTTTCTTaGAAAATAAACGATCATCCCGATGGCAGGTATTACCAAGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: LCLHQTVRSFHVSFS*KINDHPDGRYYQGR Trigger: TCTTCCTTGGTAATACCTGCCATCGGGATGATCGTTTATTTTGCAAGAAAAGCTAACATGAAAGGATCGTACAGTCTGGTGGAGGCACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 90 bp | TTCTTCATCAGTGTAGTCTCCCCCTTCAGTAATTCAATCTCCAGATaGTCAAAGGGATACACATTAGGGACTGTGCAGTTGACAGTGACA | + |
|
Preference number: 5 (lower is better) Translates to: FFISVVSPFSNSISR*SKGYTLGTVQLTVT Trigger: TGTCACTGTCAACTGCACAGTCCCTAATGTGTATCCCTTTGACCATCTGGAGATTGAATTACTGAAGGGGGAGACTACACTGATGAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTGTTACTTCCAAACTCTaGGTTTCTAGAGACTTTGTC | + |
|
Preference number: 5 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSVTSKL*VSRDFV Trigger: GACAAAGTCTCTAGAAACCAAGAGTTTGGAAGTAAC...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | AAGGGATCAAGCAGCCACTTTGCCTTCTTTACTGAGAAGGGTTCTGGGAAGTCTTGGTTTCTAGAGACTTaGTCATCTCTTCTGAAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: KGSSSHFAFFTEKGSGKSWFLET*SSLLKK Trigger: TTTCTTCAGAAGAGATGACAAAGTCTCTAGAAACCA...AGACTTCCCAGAACCCTTCTCAGTAAAGAAGGCAAAGTGGCTGCTTGATCCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 90 bp | AGTGCAGGAGATAATGACGGTGTCTCCCTCTTTGACACTCTTAGATaGAAAGACTGTAAGCTGTATATCTTTTGGAGAGACTTGGATAAT | + |
|
Preference number: 5 (lower is better) Translates to: SAGDNDGVSLFDTLR*KDCKLYIFWRDLDN Trigger: ATTATCCAAGTCTCTCCAAAAGATATACAGCTTACAGTCTTTCCATCTAAGAGTGTCAAAGAGGGAGACACCGTCATTATCTCCTGCACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS-3UTR CAA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATGATGTACAGAGATCGTaGTATTCCTGGGAGAGATGT | + |
|
Preference number: 5 (lower is better) Translates to: LASRHSDSDEMTYFERKNDVQRS*YSWERC Trigger: ACATCTCTCCCAGGAATACAACGATCTCTGTACATC...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CAA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATCATGGAGTCACCGATTaGAGCAATCGTTTTGTATTC | + |
|
Preference number: 5 (lower is better) Translates to: LASRHSDSDEMTYFERKNHGVTD*SNRFVF Trigger: GAATACAAAACGATTGCTCAAATCGGTGACTCCATG...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CAA 90 bp | CAGAATGAATTTTTCCCCCATTTGAAACAGGGCCAATCATTTCAGAATGCAACCGTTACTTCCAAACTCTaGGTTTCTAGAGACTTTGTC | + |
|
Preference number: 5 (lower is better) Translates to: QNEFFPHLKQGQSFQNATVTSKL*VSRDFV Trigger: GACAAAGTCTCTAGAAACCAAGAGTTTGGAAGTAAC...GGTTGCATTCTGAAATGATTGGCCCTGTTTCAAATGGGGGAAAAATTCATTCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS-3UTR CAA 90 bp | CTAGCTTCCAGACACTCAGACTCGGATGAAATGACATATTTTGAGAGAAAGAATTGGTTTCTAGAGACTTaGTCATCTCTTCTGAAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: LASRHSDSDEMTYFERKNWFLET*SSLLKK Trigger: TTTCTTCAGAAGAGATGACAAAGTCTCTAGAAACCA...ATTCTTTCTCTCAAAATATGTCATTTCATCCGAGTCTGAGTGTCTGGAAGCTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196449.5 |
||
| CDS CAA 72 bp | TCTCAGGAGCTGGTAGACCCTCGCTGGAACAGGTCATaGTCACAGCACCACCCTCTTGAAGCCTTGTGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: SQELVDPRWNRS*SQHHPLEALWR Trigger: CCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAGGGTCTACCAGCTCCTGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS CCA 72 bp | TCCGTCCTCACCTTCGCGTTTAGTGGGCTGTCTATCTaGGTTCTCCATGAGAACAATGGTGACTCGCAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SVLTFAFSGLSI*VLHENNGDSQP Trigger: GGGCTGCGAGTCACCATTGTTCTCATGGAGAACCCAGATAGACAGCCCACTAAACGCGAAGGTGAGGACGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CAA 72 bp | TTCTCAAAACTGACAGGCTCCATGGTCAGAACGGACTaGGACCCCTCCGTCCTCACCTTCGCGTTTAGTGGG | + |
|
Preference number: 6 (lower is better) Translates to: FSKLTGSMVRTD*DPSVLTFAFSG Trigger: CCCACTAAACGCGAAGGTGAGGACGGAGGGGTCCAAGTCCGTTCTGACCATGGAGCCTGTCAGTTTTGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CAA 72 bp | CGTGACCGGCTTCCCAACCTCCAGGGGGCCACTGAATaGAATCTCTGGATCCTTGGGGAAAGAGTAGATGTC | + |
|
Preference number: 6 (lower is better) Translates to: RDRLPNLQGATE*NLWILGERVDV Trigger: GACATCTACTCTTTCCCCAAGGATCCAGAGATTCAATTCAGTGGCCCCCTGGAGGTTGGGAAGCCGGTCACG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CAA 90 bp | CCCAGAAAATCTCAGGAGCTGGTAGACCCTCGCTGGAACAGGTCATaGTCACAGCACCACCCTCTTGAAGCCTTGTGGAGGGATGTACAG | + |
|
Preference number: 6 (lower is better) Translates to: PRKSQELVDPRWNRS*SQHHPLEALWRDVQ Trigger: CTGTACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAGGGTCTACCAGCTCCTGAGATTTTCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS GCA 72 bp | AGCAGCACACGTCAGAACAACCGAATCCCCAACTTGTaGAGCCACCTGAGATCCGGGGGAGATGTCAACAAT | + |
|
Preference number: 6 (lower is better) Translates to: SSTRQNNRIPNL*SHLRSGGDVNN Trigger: ATTGTTGACATCTCCCCCGGATCTCAGGTGGCTGCACAAGTTGGGGATTCGGTTGTTCTGACGTGTGCTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 72 bp | TGCCCCAGAAAATCTCAGGAGCTGGTAGACCCTCGCTaGAACAGGTCATTGTCACAGCACCACCCTCTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: CPRKSQELVDPR*NRSLSQHHPLE Trigger: TTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAGGGTCTACCAGCTCCTGAGATTTTCTGGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS CAA 72 bp | AATAGCAGCACACGTCAGAACAACCGAATCCCCAACTaGTGCAGCCACCTGAGATCCGGGGGAGATGTCAAC | + |
|
Preference number: 6 (lower is better) Translates to: NSSTRQNNRIPN*CSHLRSGGDVN Trigger: GTTGACATCTCCCCCGGATCTCAGGTGGCTGCACAAGTTGGGGATTCGGTTGTTCTGACGTGTGCTGCTATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CAA 72 bp | TGCTCCACAGGATTTTGGGAGCTGGTATCCCATCACTaGAGCAGGTCAGGTTCACAGGACTGCCCTCCTCTA | + |
|
Preference number: 6 (lower is better) Translates to: CSTGFWELVSHH*SRSGSQDCPPL Trigger: TAGAGGAGGGCAGTCCTGTGAACCTGACCTGCTCAAGTGATGGGATACCAGCTCCCAAAATCCTGTGGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CAA 90 bp | GAGTGTTCATTCTCAAAACTGACAGGCTCCATGGTCAGAACGGACTaGGACCCCTCCGTCCTCACCTTCGCGTTTAGTGGGCTGTCTATC | + |
|
Preference number: 6 (lower is better) Translates to: ECSFSKLTGSMVRTD*DPSVLTFAFSGLSI Trigger: GATAGACAGCCCACTAAACGCGAAGGTGAGGACGGAGGGGTCCAAGTCCGTTCTGACCATGGAGCCTGTCAGTTTTGAGAATGAACACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CCA 72 bp | CTTCCCAACCTCCAGGGGGCCACTGAATTGAATCTCTaGATCCTTGGGGAAAGAGTAGATGTCCACGTGGAT | + |
|
Preference number: 6 (lower is better) Translates to: LPNLQGATELNL*ILGERVDVHVD Trigger: ATCCACGTGGACATCTACTCTTTCCCCAAGGATCCAGAGATTCAATTCAGTGGCCCCCTGGAGGTTGGGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CAA 72 bp | CTCGCTGGAACAGGTCATTGTCACAGCACCACCCTCTaGAAGCCTTGTGGAGGGATGTACAGAGATCGTTGT | + |
|
Preference number: 6 (lower is better) Translates to: LAGTGHCHSTTL*KPCGGMYRDRC Trigger: ACAACGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS CAA 90 bp | CCTCGCTGGAACAGGTCATTGTCACAGCACCACCCTCTTGAAGCCTaGTGGAGGGATGTACAGAGATCGTTGTATTCCTGGGAGAGATGT | + |
|
Preference number: 6 (lower is better) Translates to: PRWNRSLSQHHPLEA*WRDVQRSLYSWERC Trigger: ACATCTCTCCCAGGAATACAACGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS TCA 72 bp | AGCTTGAGAGACTGCAAACAGTATCCAAAGTACCGTTaGGGCTCCCAAGACCGCGACCATCTTCACAGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: SLRDCKQYPKYR*GSQDRDHLHRH Trigger: ATGCCTGTGAAGATGGTCGCGGTCTTGGGAGCCTCAACGGTACTTTGGATACTGTTTGCAGTCTCTCAAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS TCA 72 bp | TCGCTGGAACAGGTCATTGTCACAGCACCACCCTCTTaGAGCCTTGTGGAGGGATGTACAGAGATCGTTGTA | + |
|
Preference number: 6 (lower is better) Translates to: SLEQVIVTAPPS*SLVEGCTEIVV Trigger: TACAACGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS CCA 72 bp | CAGATCAATCTCCAGCCTGTAAACTGGGTAAATGTCTaGAGCCAAACACTTGACCGTGACCGGCTTCCCAAC | + |
|
Preference number: 6 (lower is better) Translates to: QINLQPVNWVNV*SQTLDRDRLPN Trigger: GTTGGGAAGCCGGTCACGGTCAAGTGTTTGGCTCCAGACATTTACCCAGTTTACAGGCTGGAGATTGATCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CCA 72 bp | AGGTCATTGTCACAGCACCACCCTCTTGAAGCCTTGTaGAGGGATGTACAGAGATCGTTGTATTCCTGGGAG | + |
|
Preference number: 6 (lower is better) Translates to: RSLSQHHPLEAL*RDVQRSLYSWE Trigger: CTCCCAGGAATACAACGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS CAA 72 bp | AAGCTTGAGAGACTGCAAACAGTATCCAAAGTACCGTaGAGGCTCCCAAGACCGCGACCATCTTCACAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: KLERLQTVSKVP*RLPRPRPSSQA Trigger: TGCCTGTGAAGATGGTCGCGGTCTTGGGAGCCTCAACGGTACTTTGGATACTGTTTGCAGTCTCTCAAGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS TCA 72 bp | GTCAGAACAACCGAATCCCCAACTTGTGCAGCCACCTaGGATCCGGGGGAGATGTCAACAATAAATGGTTTC | + |
|
Preference number: 6 (lower is better) Translates to: VRTTESPTCAAT*DPGEMSTINGF Trigger: GAAACCATTTATTGTTGACATCTCCCCCGGATCTCAGGTGGCTGCACAAGTTGGGGATTCGGTTGTTCTGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 72 bp | GTTCCCCATTATTTAGCTGTCTGCTCCACAGGATTTTaGGAGCTGGTATCCCATCACTTGAGCAGGTCAGGT | + |
|
Preference number: 6 (lower is better) Translates to: VPHYLAVCSTGF*ELVSHHLSRSG Trigger: ACCTGACCTGCTCAAGTGATGGGATACCAGCTCCCAAAATCCTGTGGAGCAGACAGCTAAATAATGGGGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CAA 72 bp | CGTAGTGCTGCAAGTGAGGGCCATGGAGTCACCGATTaGAGCAATCGTTTTGTATTCAGGGGAGATCTCGAT | + |
|
Preference number: 6 (lower is better) Translates to: RSAASEGHGVTD*SNRFVFRGDLD Trigger: ATCGAGATCTCCCCTGAATACAAAACGATTGCTCAAATCGGTGACTCCATGGCCCTCACTTGCAGCACTACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CAA 72 bp | AACAGGTCATTGTCACAGCACCACCCTCTTGAAGCCTaGTGGAGGGATGTACAGAGATCGTTGTATTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: NRSLSQHHPLEA*WRDVQRSLYSW Trigger: CCAGGAATACAACGATCTCTGTACATCCCTCCACAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS GCA 72 bp | AACGATCATCCCGATGGCAGGTATTACCAAGGAAGATaGGCAGTAGAGTGCAAGGAGTTCGGGCGAAAAATA | + |
|
Preference number: 6 (lower is better) Translates to: NDHPDGRYYQGR*AVECKEFGRKI Trigger: TATTTTTCGCCCGAACTCCTTGCACTCTACTGCGCATCTTCCTTGGTAATACCTGCCATCGGGATGATCGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 72 bp | GTCACCCTTGAACAGATCAATCTCCAGCCTGTAAACTaGGTAAATGTCTGGAGCCAAACACTTGACCGTGAC | + |
|
Preference number: 6 (lower is better) Translates to: VTLEQINLQPVN*VNVWSQTLDRD Trigger: GTCACGGTCAAGTGTTTGGCTCCAGACATTTACCCAGTTTACAGGCTGGAGATTGATCTGTTCAAGGGTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
||
| CDS CAA 90 bp | TCAATCTCCAGATGGTCAAAGGGATACACATTAGGGACTGTGCAGTaGACAGTGACAGGTCTCCCATGCACAAGTGGCCCACTCATTTTA | + |
|
Preference number: 6 (lower is better) Translates to: SISRWSKGYTLGTVQ*TVTGLPCTSGPLIL Trigger: TAAAATGAGTGGGCCACTTGTGCATGGGAGACCTGTCACTGTCAACTGCACAGTCCCTAATGTGTATCCCTTTGACCATCTGGAGATTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS GCA 72 bp | TTAGGGACTGTGCAGTTGACAGTGACAGGTCTCCCATaGACAAGTGGCCCACTCATTTTAATTACTGGATCT | + |
|
Preference number: 6 (lower is better) Translates to: LGTVQLTVTGLP*TSGPLILITGS Trigger: AGATCCAGTAATTAAAATGAGTGGGCCACTTGTGCATGGGAGACCTGTCACTGTCAACTGCACAGTCCCTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS TCA 72 bp | TGGCCCACTCATTTTAATTACTGGATCTTCAGGGAATaGGTAGACCTCCACCTGGGTTCTCTTTTCCAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: WPTHFNYWIFRE*VDLHLGSLFQC Trigger: ACACTGGAAAAGAGAACCCAGGTGGAGGTCTACTCATTCCCTGAAGATCCAGTAATTAAAATGAGTGGGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS GCA 72 bp | GATGGCAGGTATTACCAAGGAAGATGCGCAGTAGAGTaGAAGGAGTTCGGGCGAAAAATAGTTCTTGTTATG | + |
|
Preference number: 6 (lower is better) Translates to: DGRYYQGRCAVE*KEFGRKIVLVM Trigger: CATAACAAGAACTATTTTTCGCCCGAACTCCTTGCACTCTACTGCGCATCTTCCTTGGTAATACCTGCCATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
||
| CDS CCA 72 bp | GCAATTAAGGTGAGGGTGGCATTTCCTGAGAGAAGCTaGAGAACTTCATTATCTAACTTCCTGCCCCAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: AIKVRVAFPERS*RTSLSNFLPQK Trigger: TTTCTGGGGCAGGAAGTTAGATAATGAAGTTCTCCAGCTTCTCTCAGGAAATGCCACCCTCACCTTAATTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029574.13 ENSMUST00000196449.5 |
||
| CDS CCA 72 bp | AGTGTAGTCTCCCCCTTCAGTAATTCAATCTCCAGATaGTCAAAGGGATACACATTAGGGACTGTGCAGTTG | + |
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Preference number: 6 (lower is better) Translates to: SVVSPFSNSISR*SKGYTLGTVQL Trigger: CAACTGCACAGTCCCTAATGTGTATCCCTTTGACCATCTGGAGATTGAATTACTGAAGGGGGAGACTACACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS CAA 72 bp | CCACAAGTGCAGGAGATAATGACGGTGTCTCCCTCTTaGACACTCTTAGATGGAAAGACTGTAAGCTGTATA | + |
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Preference number: 6 (lower is better) Translates to: PQVQEIMTVSPS*TLLDGKTVSCI Trigger: TATACAGCTTACAGTCTTTCCATCTAAGAGTGTCAAAGAGGGAGACACCGTCATTATCTCCTGCACTTGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS CAA 90 bp | GGCACATTTCCACAAGTGCAGGAGATAATGACGGTGTCTCCCTCTTaGACACTCTTAGATGGAAAGACTGTAAGCTGTATATCTTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: GTFPQVQEIMTVSPS*TLLDGKTVSCISFG Trigger: TCCAAAAGATATACAGCTTACAGTCTTTCCATCTAAGAGTGTCAAAGAGGGAGACACCGTCATTATCTCCTGCACTTGTGGAAATGTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS GCA 72 bp | CACCAGACTGTACGATCCTTTCATGTTAGCTTTTCTTaGAAAATAAACGATCATCCCGATGGCAGGTATTAC | + |
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Preference number: 6 (lower is better) Translates to: HQTVRSFHVSFS*KINDHPDGRYY Trigger: GTAATACCTGCCATCGGGATGATCGTTTATTTTGCAAGAAAAGCTAACATGAAAGGATCGTACAGTCTGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS CAA 90 bp | TTTCCAATATCCTCAATGACGGGAGTAAAGGTTACTTCCAAACTCTaGGTTTCTAGAGACTTTGTCATCTCTTCTGAAGAAAACTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: FPISSMTGVKVTSKL*VSRDFVISSEENSC Trigger: ACAGGAGTTTTCTTCAGAAGAGATGACAAAGTCTCTAGAAACCAAGAGTTTGGAAGTAACCTTTACTCCCGTCATTGAGGATATTGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029574.13 ENSMUST00000196309.2 ENSMUST00000196449.5 |
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| CDS TCA 72 bp | TATATCTTTTGGAGAGACTTGGATAATCAGTTCAACTaGTTTTCTGCTAATTCCAGCCTCGTTAATCCCTTC | + |
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Preference number: 6 (lower is better) Translates to: YIFWRDLDNQFN*FSANSSLVNPF Trigger: GAAGGGATTAACGAGGCTGGAATTAGCAGAAAATCAGTTGAACTGATTATCCAAGTCTCTCCAAAAGATATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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| CDS CCA 72 bp | GGAAAGACTGTAAGCTGTATATCTTTTGGAGAGACTTaGATAATCAGTTCAACTGATTTTCTGCTAATTCCA | + |
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Preference number: 6 (lower is better) Translates to: GKTVSCISFGET*IISSTDFLLIP Trigger: TGGAATTAGCAGAAAATCAGTTGAACTGATTATCCAAGTCTCTCCAAAAGATATACAGCTTACAGTCTTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029574.13 |
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