RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031197

Ensembl transcript IDs: ENSMUST00000033540.6, ENSMUST00000114070.10

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTGGTaGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTGCACG +
Preference number: 1 (lower is better)
Translates to: IVRRNTGICNCVCVW*LIMAWIPRWGSLCT
Trigger: CGTGCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR CCA 90 bp TGCATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTaGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTGC +
Preference number: 1 (lower is better)
Translates to: CIVRRNTGICNCVCV*WLIMAWIPRWGSLC
Trigger: GCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR CAA 90 bp GTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTGGTGGTaGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTGCACGGCC +
Preference number: 2 (lower is better)
Translates to: VRRNTGICNCVCVWW*IMAWIPRWGSLCTA
Trigger: GGCCGTGCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR CAA 90 bp TTGCATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTaGGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTG +
Preference number: 2 (lower is better)
Translates to: LHSKKKYWHMQLCLR*VVDYGMDPQMGQSL
Trigger: CAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTATGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR-3UTR GCA 90 bp TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAAAGAAAACTGCTCTGGTaGCCAGTATTCAGCAGCTTC +
Preference number: 2 (lower is better)
Translates to: FTTVSTNGFPEIISVLCKRKLLW*PVFSSF
Trigger: GAAGCTGCTGAATACTGGGCACCAGAGCAGTTTTCT...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
3UTR-3UTR CCA 90 bp CAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAATTTTATCAAAAGAAAACTGCTCTaGTGCCCAGTATTCAGCAGC +
Preference number: 2 (lower is better)
Translates to: QSVPMAFQRLYLSYVNFIKRKLL*CPVFSS
Trigger: GCTGCTGAATACTGGGCACCAGAGCAGTTTTCTTTT...GATAAAATTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
3UTR-3UTR GCA 90 bp TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAAAAAGAAAAAGAAAACTaGTCTGGTGCCCAGTATTCA +
Preference number: 2 (lower is better)
Translates to: FTTVSTNGFPEIISVLCKKEKEN*SGAQYS
Trigger: TGAATACTGGGCACCAGAGCAGTTTTCTTTTTCTTT...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA
37% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
3UTR-3UTR CCA 90 bp CAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAATTTTATCGGGATCAAAGTGTTATaGATGTCAATAGCCCTCATA +
Preference number: 2 (lower is better)
Translates to: QSVPMAFQRLYLSYVNFIGIKVL*MSIALI
Trigger: TATGAGGGCTATTGACATCCATAACACTTTGATCCC...GATAAAATTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
3UTR-3UTR CCA 90 bp TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAACAAGCTTACAAATATTaGAACTGTATGTCTTTCCTG +
Preference number: 2 (lower is better)
Translates to: FTTVSTNGFPEIISVLCKQAYKY*NCMSFL
Trigger: CAGGAAAGACATACAGTTCCAATATTTGTAAGCTTG...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
3UTR GCA 72 bp TTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTaGACGGCCGTTCCTTCCATCTCATCTCCGCCAAGA +
Preference number: 3 (lower is better)
Translates to: LIMAWIPRWGSL*TAVPSISSPPR
Trigger: TCTTGGCGGAGATGAGATGGAAGGAACGGCCGTGCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR TCA 72 bp ATACTGGCATATGCAATTGTGTCTGCGTTTGGTGGTTaGTTATGGCATGGATCCCCAGATGGGGCAGTCTCT +
Preference number: 3 (lower is better)
Translates to: ILAYAIVSAFGG*LWHGSPDGAVS
Trigger: AGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR CCA 72 bp AGAAATACTGGCATATGCAATTGTGTCTGCGTTTGGTaGTTGATTATGGCATGGATCCCCAGATGGGGCAGT +
Preference number: 3 (lower is better)
Translates to: RNTGICNCVCVW*LIMAWIPRWGS
Trigger: ACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR CCA 72 bp AGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTaGTGGTTGATTATGGCATGGATCCCCAGATGGGGC +
Preference number: 3 (lower is better)
Translates to: RRNTGICNCVCV*WLIMAWIPRWG
Trigger: GCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR GCA 72 bp ATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTaGGTTTGGTGGTTGATTATGGCATGGATCCCCAGA +
Preference number: 3 (lower is better)
Translates to: IVRRNTGICNCV*VWWLIMAWIPR
Trigger: TCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR CCA 72 bp GTAGACACACTATACTTACTTGGGATCAAAGTGTTATaGATGTCAATAGCCCTCATACTGTGTAGGAAAGCA +
Preference number: 3 (lower is better)
Translates to: VDTLYLLGIKVL*MSIALILCRKA
Trigger: TGCTTTCCTACACAGTATGAGGGCTATTGACATCCATAACACTTTGATCCCAAGTAAGTATAGTGTGTCTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
3UTR CCA 72 bp CCCTTATATTGTCATTGTAGACACACTATACTTACTTaGGATCAAAGTGTTATGGATGTCAATAGCCCTCAT +
Preference number: 3 (lower is better)
Translates to: PLYCHCRHTILT*DQSVMDVNSPH
Trigger: ATGAGGGCTATTGACATCCATAACACTTTGATCCCAAGTAAGTATAGTGTGTCTACAATGACAATATAAGGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
CDS-3UTR CCA 90 bp TTGTGTCTGCGTTTGGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTTCAGGAATCCCTAAGTaGAGCCGCCGCCCGTTTCCA +
Preference number: 4 (lower is better)
Translates to: LCLRLVVDYGMDPQMGQSSGIPK*SRRPFP
Trigger: TGGAAACGGGCGGCGGCTCCACTTAGGGATTCCTGA...AGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
CDS-3UTR TCA 90 bp CATGGATCCCCAGATGGGGCAGTCTCTGCACGGCCGTTCCTTCCATCTCATCTCTCCCAGGCTGCTTCATaGAAGAATCTACATCTTCCA +
Preference number: 4 (lower is better)
Translates to: HGSPDGAVSARPFLPSHLSQAAS*KNLHLP
Trigger: TGGAAGATGTAGATTCTTTCATGAAGCAGCCTGGGA...GAGATGAGATGGAAGGAACGGCCGTGCAGAGACTGCCCCATCTGGGGATCCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
CDS-3UTR GCA 90 bp TTGTGTCTGCGTTTGGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTGAGGGACTGAAGCTTTaGAGTACAGGTTATCGGCCA +
Preference number: 4 (lower is better)
Translates to: LCLRLVVDYGMDPQMGQSEGLKL*STGYRP
Trigger: TGGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTC...AGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
CDS-3UTR CCA 90 bp CCAGTATTCAGCAGCTTCCATAGCATTCCTCACAGTTCTCGGCCATTTCAGTTATCAGGAATCCCTAAGTaGAGCCGCCGCCCGTTTCCA +
Preference number: 4 (lower is better)
Translates to: PVFSSFHSIPHSSRPFQLSGIPK*SRRPFP
Trigger: TGGAAACGGGCGGCGGCTCCACTTAGGGATTCCTGA...TAACTGAAATGGCCGAGAACTGTGAGGAATGCTATGGAAGCTGCTGAATACTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
CDS-3UTR TCA 90 bp CTCTGGTGCCCAGTATTCAGCAGCTTCCATAGCATTCCTCACAGTTCTCGGCCATCCCAGGCTGCTTCATaGAAGAATCTACATCTTCCA +
Preference number: 4 (lower is better)
Translates to: LWCPVFSSFHSIPHSSRPSQAAS*KNLHLP
Trigger: TGGAAGATGTAGATTCTTTCATGAAGCAGCCTGGGA...TGGCCGAGAACTGTGAGGAATGCTATGGAAGCTGCTGAATACTGGGCACCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
3UTR CAA 72 bp AATACTGGCATATGCAATTGTGTCTGCGTTTGGTGGTaGATTATGGCATGGATCCCCAGATGGGGCAGTCTC +
Preference number: 4 (lower is better)
Translates to: NTGICNCVCVWW*IMAWIPRWGSL
Trigger: GAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
3UTR CAA 72 bp AAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTaGGTGGTTGATTATGGCATGGATCCCCAGATGGGG +
Preference number: 4 (lower is better)
Translates to: KKKYWHMQLCLR*VVDYGMDPQMG
Trigger: CCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
CDS-3UTR GCA 90 bp ATAGCCCTCATACTGTGTAGGAAAGCAAATAACAATTTTCTGAAAAGTTCAGAGGAGGGACTGAAGCTTTaGAGTACAGGTTATCGGCCA +
Preference number: 4 (lower is better)
Translates to: IALILCRKANNNFLKSSEEGLKL*STGYRP
Trigger: TGGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTC...CTCTGAACTTTTCAGAAAATTGTTATTTGCTTTCCTACACAGTATGAGGGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
CDS-3UTR TCA 90 bp CAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAATTTTATCATCAGTAGGAGGGACTaGAGCTTTGCAGTACAGGTT +
Preference number: 4 (lower is better)
Translates to: QSVPMAFQRLYLSYVNFIISRRD*SFAVQV
Trigger: AACCTGTACTGCAAAGCTTCAGTCCCTCCTACTGAT...GATAAAATTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
CDS-3UTR TCA 90 bp AAAACATTGCATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTGATCAGTAGGAGGGACTaGAGCTTTGCAGTACAGGTT +
Preference number: 4 (lower is better)
Translates to: KTLHSKKKYWHMQLCLRLISRRD*SFAVQV
Trigger: AACCTGTACTGCAAAGCTTCAGTCCCTCCTACTGAT...CAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTATGCAATGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
CDS-3UTR TCA 90 bp TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAATCTGTGGTAGTAAACTaGTCTCGAAGAAAGTCAAGG +
Preference number: 4 (lower is better)
Translates to: FTTVSTNGFPEIISVLCKSVVVN*SRRKSR
Trigger: CCTTGACTTTCTTCGAGATCAGTTTACTACCACAGA...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
3UTR CAA 72 bp ACATTGCATAGTAAGAAGAAATACTGGCATATGCAATaGTGTCTGCGTTTGGTGGTTGATTATGGCATGGAT +
Preference number: 4 (lower is better)
Translates to: TLHSKKKYWHMQ*CLRLVVDYGMD
Trigger: ATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTATGCAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
CDS-3UTR CAA 90 bp GTTTGGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTGCACGGCCGGAGGGACTGAAGCTTaGCAGTACAGGTTATCGGCC +
Preference number: 5 (lower is better)
Translates to: VWWLIMAWIPRWGSLCTAGGTEA*QYRLSA
Trigger: GGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTCC...GGCCGTGCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000114070.10
CDS CCA 90 bp AAAGAATCTACATCTTCCACAAACACTGCTTCAGGAATCCCTAAGTaGAGCCGCCGCCCGTTTCCAGCAGCAGTTTCTAGGCCGCATCCG +
Preference number: 5 (lower is better)
Translates to: KESTSSTNTASGIPK*SRRPFPAAVSRPHP
Trigger: CGGATGCGGCCTAGAAACTGCTGCTGGAAACGGGCGGCGGCTCCACTTAGGGATTCCTGAAGCAGTGTTTGTGGAAGATGTAGATTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033540.6
ENSMUST00000114070.10
CDS-3UTR CAA 90 bp TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAAGGAGGGACTGAAGCTTaGCAGTACAGGTTATCGGCC +
Preference number: 5 (lower is better)
Translates to: FTTVSTNGFPEIISVLCKGGTEA*QYRLSA
Trigger: GGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTCC...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033540.6
CDS CCA 72 bp ACATCTTCCACAAACACTGCTTCAGGAATCCCTAAGTaGAGCCGCCGCCCGTTTCCAGCAGCAGTTTCTAGG +
Preference number: 6 (lower is better)
Translates to: TSSTNTASGIPK*SRRPFPAAVSR
Trigger: CCTAGAAACTGCTGCTGGAAACGGGCGGCGGCTCCACTTAGGGATTCCTGAAGCAGTGTTTGTGGAAGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033540.6
ENSMUST00000114070.10
CDS CAA 90 bp GCCCCCAACCATAGGCATACTTTATCAGTAGGAGGGACTGAAGCTTaGCAGTACAGGTTATCGGCCAGTAAGAATCTCGTCTCCATTGAA +
Preference number: 6 (lower is better)
Translates to: APNHRHTLSVGGTEA*QYRLSASKNLVSIE
Trigger: TTCAATGGAGACGAGATTCTTACTGGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTCCTACTGATAAAGTATGCCTATGGTTGGGGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000033540.6
ENSMUST00000114070.10
CDS CAA 72 bp CATAGGCATACTTTATCAGTAGGAGGGACTGAAGCTTaGCAGTACAGGTTATCGGCCAGTAAGAATCTCGTC +
Preference number: 6 (lower is better)
Translates to: HRHTLSVGGTEA*QYRLSASKNLV
Trigger: GACGAGATTCTTACTGGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTCCTACTGATAAAGTATGCCTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033540.6
ENSMUST00000114070.10