Pregenerated sensors for VBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031197Ensembl transcript IDs: ENSMUST00000033540.6, ENSMUST00000114070.10
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | ATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTGGTaGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTGCACG | + |
Preference number: 1 (lower is better) Translates to: IVRRNTGICNCVCVW*LIMAWIPRWGSLCT Trigger: CGTGCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR CCA 90 bp | TGCATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTaGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTGC | + |
Preference number: 1 (lower is better) Translates to: CIVRRNTGICNCVCV*WLIMAWIPRWGSLC Trigger: GCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR CAA 90 bp | GTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTGGTGGTaGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTGCACGGCC | + |
Preference number: 2 (lower is better) Translates to: VRRNTGICNCVCVWW*IMAWIPRWGSLCTA Trigger: GGCCGTGCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR CAA 90 bp | TTGCATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTaGGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTG | + |
Preference number: 2 (lower is better) Translates to: LHSKKKYWHMQLCLR*VVDYGMDPQMGQSL Trigger: CAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTATGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR-3UTR GCA 90 bp | TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAAAGAAAACTGCTCTGGTaGCCAGTATTCAGCAGCTTC | + |
Preference number: 2 (lower is better) Translates to: FTTVSTNGFPEIISVLCKRKLLW*PVFSSF Trigger: GAAGCTGCTGAATACTGGGCACCAGAGCAGTTTTCT...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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3UTR-3UTR CCA 90 bp | CAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAATTTTATCAAAAGAAAACTGCTCTaGTGCCCAGTATTCAGCAGC | + |
Preference number: 2 (lower is better) Translates to: QSVPMAFQRLYLSYVNFIKRKLL*CPVFSS Trigger: GCTGCTGAATACTGGGCACCAGAGCAGTTTTCTTTT...GATAAAATTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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3UTR-3UTR GCA 90 bp | TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAAAAAGAAAAAGAAAACTaGTCTGGTGCCCAGTATTCA | + |
Preference number: 2 (lower is better) Translates to: FTTVSTNGFPEIISVLCKKEKEN*SGAQYS Trigger: TGAATACTGGGCACCAGAGCAGTTTTCTTTTTCTTT...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA 37% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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3UTR-3UTR CCA 90 bp | CAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAATTTTATCGGGATCAAAGTGTTATaGATGTCAATAGCCCTCATA | + |
Preference number: 2 (lower is better) Translates to: QSVPMAFQRLYLSYVNFIGIKVL*MSIALI Trigger: TATGAGGGCTATTGACATCCATAACACTTTGATCCC...GATAAAATTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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3UTR-3UTR CCA 90 bp | TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAACAAGCTTACAAATATTaGAACTGTATGTCTTTCCTG | + |
Preference number: 2 (lower is better) Translates to: FTTVSTNGFPEIISVLCKQAYKY*NCMSFL Trigger: CAGGAAAGACATACAGTTCCAATATTTGTAAGCTTG...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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3UTR GCA 72 bp | TTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTaGACGGCCGTTCCTTCCATCTCATCTCCGCCAAGA | + |
Preference number: 3 (lower is better) Translates to: LIMAWIPRWGSL*TAVPSISSPPR Trigger: TCTTGGCGGAGATGAGATGGAAGGAACGGCCGTGCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR TCA 72 bp | ATACTGGCATATGCAATTGTGTCTGCGTTTGGTGGTTaGTTATGGCATGGATCCCCAGATGGGGCAGTCTCT | + |
Preference number: 3 (lower is better) Translates to: ILAYAIVSAFGG*LWHGSPDGAVS Trigger: AGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR CCA 72 bp | AGAAATACTGGCATATGCAATTGTGTCTGCGTTTGGTaGTTGATTATGGCATGGATCCCCAGATGGGGCAGT | + |
Preference number: 3 (lower is better) Translates to: RNTGICNCVCVW*LIMAWIPRWGS Trigger: ACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR CCA 72 bp | AGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTaGTGGTTGATTATGGCATGGATCCCCAGATGGGGC | + |
Preference number: 3 (lower is better) Translates to: RRNTGICNCVCV*WLIMAWIPRWG Trigger: GCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR GCA 72 bp | ATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTaGGTTTGGTGGTTGATTATGGCATGGATCCCCAGA | + |
Preference number: 3 (lower is better) Translates to: IVRRNTGICNCV*VWWLIMAWIPR Trigger: TCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR CCA 72 bp | GTAGACACACTATACTTACTTGGGATCAAAGTGTTATaGATGTCAATAGCCCTCATACTGTGTAGGAAAGCA | + |
Preference number: 3 (lower is better) Translates to: VDTLYLLGIKVL*MSIALILCRKA Trigger: TGCTTTCCTACACAGTATGAGGGCTATTGACATCCATAACACTTTGATCCCAAGTAAGTATAGTGTGTCTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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3UTR CCA 72 bp | CCCTTATATTGTCATTGTAGACACACTATACTTACTTaGGATCAAAGTGTTATGGATGTCAATAGCCCTCAT | + |
Preference number: 3 (lower is better) Translates to: PLYCHCRHTILT*DQSVMDVNSPH Trigger: ATGAGGGCTATTGACATCCATAACACTTTGATCCCAAGTAAGTATAGTGTGTCTACAATGACAATATAAGGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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CDS-3UTR CCA 90 bp | TTGTGTCTGCGTTTGGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTTCAGGAATCCCTAAGTaGAGCCGCCGCCCGTTTCCA | + |
Preference number: 4 (lower is better) Translates to: LCLRLVVDYGMDPQMGQSSGIPK*SRRPFP Trigger: TGGAAACGGGCGGCGGCTCCACTTAGGGATTCCTGA...AGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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CDS-3UTR TCA 90 bp | CATGGATCCCCAGATGGGGCAGTCTCTGCACGGCCGTTCCTTCCATCTCATCTCTCCCAGGCTGCTTCATaGAAGAATCTACATCTTCCA | + |
Preference number: 4 (lower is better) Translates to: HGSPDGAVSARPFLPSHLSQAAS*KNLHLP Trigger: TGGAAGATGTAGATTCTTTCATGAAGCAGCCTGGGA...GAGATGAGATGGAAGGAACGGCCGTGCAGAGACTGCCCCATCTGGGGATCCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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CDS-3UTR GCA 90 bp | TTGTGTCTGCGTTTGGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTGAGGGACTGAAGCTTTaGAGTACAGGTTATCGGCCA | + |
Preference number: 4 (lower is better) Translates to: LCLRLVVDYGMDPQMGQSEGLKL*STGYRP Trigger: TGGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTC...AGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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CDS-3UTR CCA 90 bp | CCAGTATTCAGCAGCTTCCATAGCATTCCTCACAGTTCTCGGCCATTTCAGTTATCAGGAATCCCTAAGTaGAGCCGCCGCCCGTTTCCA | + |
Preference number: 4 (lower is better) Translates to: PVFSSFHSIPHSSRPFQLSGIPK*SRRPFP Trigger: TGGAAACGGGCGGCGGCTCCACTTAGGGATTCCTGA...TAACTGAAATGGCCGAGAACTGTGAGGAATGCTATGGAAGCTGCTGAATACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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CDS-3UTR TCA 90 bp | CTCTGGTGCCCAGTATTCAGCAGCTTCCATAGCATTCCTCACAGTTCTCGGCCATCCCAGGCTGCTTCATaGAAGAATCTACATCTTCCA | + |
Preference number: 4 (lower is better) Translates to: LWCPVFSSFHSIPHSSRPSQAAS*KNLHLP Trigger: TGGAAGATGTAGATTCTTTCATGAAGCAGCCTGGGA...TGGCCGAGAACTGTGAGGAATGCTATGGAAGCTGCTGAATACTGGGCACCAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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3UTR CAA 72 bp | AATACTGGCATATGCAATTGTGTCTGCGTTTGGTGGTaGATTATGGCATGGATCCCCAGATGGGGCAGTCTC | + |
Preference number: 4 (lower is better) Translates to: NTGICNCVCVWW*IMAWIPRWGSL Trigger: GAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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3UTR CAA 72 bp | AAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTaGGTGGTTGATTATGGCATGGATCCCCAGATGGGG | + |
Preference number: 4 (lower is better) Translates to: KKKYWHMQLCLR*VVDYGMDPQMG Trigger: CCCCATCTGGGGATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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CDS-3UTR GCA 90 bp | ATAGCCCTCATACTGTGTAGGAAAGCAAATAACAATTTTCTGAAAAGTTCAGAGGAGGGACTGAAGCTTTaGAGTACAGGTTATCGGCCA | + |
Preference number: 4 (lower is better) Translates to: IALILCRKANNNFLKSSEEGLKL*STGYRP Trigger: TGGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTC...CTCTGAACTTTTCAGAAAATTGTTATTTGCTTTCCTACACAGTATGAGGGCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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CDS-3UTR TCA 90 bp | CAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAATTTTATCATCAGTAGGAGGGACTaGAGCTTTGCAGTACAGGTT | + |
Preference number: 4 (lower is better) Translates to: QSVPMAFQRLYLSYVNFIISRRD*SFAVQV Trigger: AACCTGTACTGCAAAGCTTCAGTCCCTCCTACTGAT...GATAAAATTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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CDS-3UTR TCA 90 bp | AAAACATTGCATAGTAAGAAGAAATACTGGCATATGCAATTGTGTCTGCGTTTGATCAGTAGGAGGGACTaGAGCTTTGCAGTACAGGTT | + |
Preference number: 4 (lower is better) Translates to: KTLHSKKKYWHMQLCLRLISRRD*SFAVQV Trigger: AACCTGTACTGCAAAGCTTCAGTCCCTCCTACTGAT...CAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTATGCAATGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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CDS-3UTR TCA 90 bp | TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAATCTGTGGTAGTAAACTaGTCTCGAAGAAAGTCAAGG | + |
Preference number: 4 (lower is better) Translates to: FTTVSTNGFPEIISVLCKSVVVN*SRRKSR Trigger: CCTTGACTTTCTTCGAGATCAGTTTACTACCACAGA...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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3UTR CAA 72 bp | ACATTGCATAGTAAGAAGAAATACTGGCATATGCAATaGTGTCTGCGTTTGGTGGTTGATTATGGCATGGAT | + |
Preference number: 4 (lower is better) Translates to: TLHSKKKYWHMQ*CLRLVVDYGMD Trigger: ATCCATGCCATAATCAACCACCAAACGCAGACACAATTGCATATGCCAGTATTTCTTCTTACTATGCAATGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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CDS-3UTR CAA 90 bp | GTTTGGTGGTTGATTATGGCATGGATCCCCAGATGGGGCAGTCTCTGCACGGCCGGAGGGACTGAAGCTTaGCAGTACAGGTTATCGGCC | + |
Preference number: 5 (lower is better) Translates to: VWWLIMAWIPRWGSLCTAGGTEA*QYRLSA Trigger: GGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTCC...GGCCGTGCAGAGACTGCCCCATCTGGGGATCCATGCCATAATCAACCACCAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114070.10 |
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CDS CCA 90 bp | AAAGAATCTACATCTTCCACAAACACTGCTTCAGGAATCCCTAAGTaGAGCCGCCGCCCGTTTCCAGCAGCAGTTTCTAGGCCGCATCCG | + |
Preference number: 5 (lower is better) Translates to: KESTSSTNTASGIPK*SRRPFPAAVSRPHP Trigger: CGGATGCGGCCTAGAAACTGCTGCTGGAAACGGGCGGCGGCTCCACTTAGGGATTCCTGAAGCAGTGTTTGTGGAAGATGTAGATTCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033540.6 ENSMUST00000114070.10 |
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CDS-3UTR CAA 90 bp | TTTACCACAGTCAGTACCAATGGCTTTCCAGAGATTATATCTGTCCTATGTAAAGGAGGGACTGAAGCTTaGCAGTACAGGTTATCGGCC | + |
Preference number: 5 (lower is better) Translates to: FTTVSTNGFPEIISVLCKGGTEA*QYRLSA Trigger: GGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTCC...TTTACATAGGACAGATATAATCTCTGGAAAGCCATTGGTACTGACTGTGGTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033540.6 |
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CDS CCA 72 bp | ACATCTTCCACAAACACTGCTTCAGGAATCCCTAAGTaGAGCCGCCGCCCGTTTCCAGCAGCAGTTTCTAGG | + |
Preference number: 6 (lower is better) Translates to: TSSTNTASGIPK*SRRPFPAAVSR Trigger: CCTAGAAACTGCTGCTGGAAACGGGCGGCGGCTCCACTTAGGGATTCCTGAAGCAGTGTTTGTGGAAGATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033540.6 ENSMUST00000114070.10 |
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CDS CAA 90 bp | GCCCCCAACCATAGGCATACTTTATCAGTAGGAGGGACTGAAGCTTaGCAGTACAGGTTATCGGCCAGTAAGAATCTCGTCTCCATTGAA | + |
Preference number: 6 (lower is better) Translates to: APNHRHTLSVGGTEA*QYRLSASKNLVSIE Trigger: TTCAATGGAGACGAGATTCTTACTGGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTCCTACTGATAAAGTATGCCTATGGTTGGGGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033540.6 ENSMUST00000114070.10 |
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CDS CAA 72 bp | CATAGGCATACTTTATCAGTAGGAGGGACTGAAGCTTaGCAGTACAGGTTATCGGCCAGTAAGAATCTCGTC | + |
Preference number: 6 (lower is better) Translates to: HRHTLSVGGTEA*QYRLSASKNLV Trigger: GACGAGATTCTTACTGGCCGATAACCTGTACTGCAAAGCTTCAGTCCCTCCTACTGATAAAGTATGCCTATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033540.6 ENSMUST00000114070.10 |