Pregenerated sensors for VAX2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034777Ensembl transcript IDs: ENSMUST00000037807.3
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACATCAGAAAGTACATTAGGACCAAAGTCATTTGGTTCAGTCTCTaGGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCAC | + |
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Preference number: 1 (lower is better) Translates to: HIRKYIRTKVIWFSL*AEGRWRGTCACCAH Trigger: GTGGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACCAAATGACTTTGGTCCTAATGTACTTTCTGATGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| 3UTR TCA 72 bp | AAGTACATTAGGACCAAAGTCATTTGGTTCAGTCTCTaGGCTGAGGGCAGGTGGAGAGGCACATGCGCATGC | + |
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Preference number: 3 (lower is better) Translates to: KYIRTKVIWFSL*AEGRWRGTCAC Trigger: GCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACCAAATGACTTTGGTCCTAATGTACTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR TCA 90 bp | GAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCACCCTTCCTCTTCCGCGGTGCTCTCCGTaGCGCCCGCTGCGGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: ELRAGGEAHAHAVPTLPLPRCSP*RPLRPP Trigger: TGGTGGCCGCAGCGGGCGTCACGGAGAGCACCGCGG...AAGAGGAAGGGTGGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | GCTGTGCCCACCCTTCCTCTTCCAGGCCTGCTCAGTATAGTCCACGGGGGCCAGGGCTGGCAGAGGGGGTaGCAGAGGGGACGACGCCGA | + |
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Preference number: 4 (lower is better) Translates to: AVPTLPLPGLLSIVHGGQGWQRG*QRGRRR Trigger: TCGGCGTCGTCCCCTCTGCCACCCCCTCTGCCAGCC...CTGGCCCCCGTGGACTATACTGAGCAGGCCTGGAAGAGGAAGGGTGGGCACAGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | GGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCAAGGAGGTGCCCCTGTaGCTGGCGGGAAGGCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: GSVSELRAGGEAHAHAVPKEVPL*LAGRPG Trigger: GCCAGGCCTTCCCGCCAGCCACAGGGGCACCTCCTT...GGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR TCA 90 bp | GCTGTGCCCACCCTTCCTCTTCCAGGCCTGCTCAGTATAGTCCACGGGGGCCAGCCGAGGGCATTGGATTaGGGCGTGGGGAGGAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: AVPTLPLPGLLSIVHGGQPRALD*GVGRSF Trigger: GAAACTCCTCCCCACGCCTCAATCCAATGCCCTCGG...CTGGCCCCCGTGGACTATACTGAGCAGGCCTGGAAGAGGAAGGGTGGGCACAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR GCA 90 bp | GCATGCTGTGCCCACCCTTCCTCTTCCAGGCCTGCTCAGTATAGTCCACGGGGGGTCGGGCCAACTCAGTaGGCTCTCGGCCCACCACAT | + |
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Preference number: 4 (lower is better) Translates to: ACCAHPSSSRPAQYSPRGVGPTQ*ALGPPH Trigger: ATGTGGTGGGCCGAGAGCGCACTGAGTTGGCCCGAC...CCCCCGTGGACTATACTGAGCAGGCCTGGAAGAGGAAGGGTGGGCACAGCATGC 63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | GCTGTGCCCACCCTTCCTCTTCCAGGCCTGCTCAGTATAGTCCACGGGGGCCAGGCAGGACGTTGGAGGTaGCAAAGGCCTCGGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: AVPTLPLPGLLSIVHGGQAGRWR*QRPRKQ Trigger: CTGCTTCCGAGGCCTTTGCCACCTCCAACGTCCTGC...CTGGCCCCCGTGGACTATACTGAGCAGGCCTGGAAGAGGAAGGGTGGGCACAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | GAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCACCCTTCCTCTTGAAGCCGCAGGACGTTaGAGGTGGCAAAGGCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: ELRAGGEAHAHAVPTLPLEAAGR*RWQRPR Trigger: CCGAGGCCTTTGCCACCTCCAACGTCCTGCGGCTTC...AAGAGGAAGGGTGGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR GCA 90 bp | GAGAGGCACATGCGCATGCTGTGCCCACCCTTCCTCTTCCAGGCCTGCTCAGTAGGTCAACCAAGGAGGTaGCCCTGTGGCTGGCGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ERHMRMLCPPFLFQACSVGQPRR*PCGWRE Trigger: TTCCCGCCAGCCACAGGGGCACCTCCTTGGTTGACC...TACTGAGCAGGCCTGGAAGAGGAAGGGTGGGCACAGCATGCGCATGTGCCTCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | TTTGGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGAGGATGCGGCGGCAGTaGTCTGTCTCACCGAGCGCC | + |
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Preference number: 4 (lower is better) Translates to: FGSVSELRAGGEAHAHAVRMRRQ*SVSPSA Trigger: GGCGCTCGGTGAGACAGACCACTGCCGCCGCATCCT...CACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACCAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | GGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCGTGGGGAGGAGTTTCTaGGGTCAACCAAGGAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GSVSELRAGGEAHAHAVPVGRSF*GQPRRC Trigger: GCACCTCCTTGGTTGACCCCAGAAACTCCTCCCCAC...GGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | GAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCACCCTTCCTCTTCTGAGGAAAAGCAGATaGCTGGCAGAGGGGGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: ELRAGGEAHAHAVPTLPLLRKSR*LAEGVA Trigger: TGCCACCCCCTCTGCCAGCCATCTGCTTTTCCTCAG...AAGAGGAAGGGTGGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR TCA 90 bp | GCTGTGCCCACCCTTCCTCTTCCAGGCCTGCTCAGTATAGTCCACGGGGGCCAGAACCAGACCTTCACCTaGGTCTCAGAGAGGTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: AVPTLPLPGLLSIVHGGQNQTFT*VSERFS Trigger: GCTGAACCTCTCTGAGACTCAGGTGAAGGTCTGGTT...CTGGCCCCCGTGGACTATACTGAGCAGGCCTGGAAGAGGAAGGGTGGGCACAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR GCA 90 bp | GAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCACCCTTCCTCTTGCTTCTCCAGGTCTCTaGTCTGGTCCTTCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: ELRAGGEAHAHAVPTLPLASPGL*SGPSSA Trigger: AGCAGAAGAAGGACCAGAGCAGAGACCTGGAGAAGC...AAGAGGAAGGGTGGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | TCATTTGGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTCGAGGCCGAGGGCATTaGATTGAGGCGTGGGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SFGSVSELRAGGEAHAHARGRGH*IEAWGG Trigger: TCCTCCCCACGCCTCAATCCAATGCCCTCGGCCTCG...AGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACCAAATGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR GCA 90 bp | TTTGGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCATCTCGTACCAGGATaGGGCGGCAGTGGTCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: FGSVSELRAGGEAHAHAVHLVPG*GGSGLS Trigger: AGACAGACCACTGCCGCCGCATCCTGGTACGAGATG...CACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACCAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR GCA 90 bp | GGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCACGATACAGCTGCTCTaGTGTGAAGGAAGTACGGGT | + |
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Preference number: 4 (lower is better) Translates to: GSVSELRAGGEAHAHAVPTIQLL*CEGSTG Trigger: ACCCGTACTTCCTTCACAGCAGAGCAGCTGTATCGT...GGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | TCATTTGGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGGAAAAGCAGATGGCTaGCAGAGGGGGTGGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: SFGSVSELRAGGEAHAHAGKADG*QRGWQR Trigger: CCTCTGCCACCCCCTCTGCCAGCCATCTGCTTTTCC...AGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACCAAATGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | GGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCGCTTTCTTGTCACTTTaGCCAGGGCTGCCTACTTTC | + |
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Preference number: 4 (lower is better) Translates to: GSVSELRAGGEAHAHAVPAFLSL*PGLPTF Trigger: GAAAGTAGGCAGCCCTGGCCAAAGTGACAAGAAAGC...GGGCACAGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | ACTCACACATCAGAAAGTACATTAGGACCAAAGTCATTTGGTTCAGTCTCTGAGGCTGGCGGGAAGGCCTaGCAGGCCAGGGGTCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: THTSESTLGPKSFGSVSEAGGKA*QARGQC Trigger: GCACTGACCCCTGGCCTGCCAGGCCTTCCCGCCAGC...CTCAGAGACTGAACCAAATGACTTTGGTCCTAATGTACTTTCTGATGTGTGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR GCA 90 bp | TCATTTGGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTCACTTTGGCCAGGGCTaGCTACTTTCTGTTGTTCTA | + |
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Preference number: 4 (lower is better) Translates to: SFGSVSELRAGGEAHAHAHFGQG*LLSVVL Trigger: TAGAACAACAGAAAGTAGGCAGCCCTGGCCAAAGTG...AGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACCAAATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | ACTCACACATCAGAAAGTACATTAGGACCAAAGTCATTTGGTTCAGTCTCTGAGCGAGGTCCAGGCCCTTaGGCAAGACAATTTCCCGAA | + |
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Preference number: 4 (lower is better) Translates to: THTSESTLGPKSFGSVSERGPGP*ARQFPE Trigger: TTCGGGAAATTGTCTTGCCCAAGGGCCTGGACCTCG...CTCAGAGACTGAACCAAATGACTTTGGTCCTAATGTACTTTCTGATGTGTGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CCA 90 bp | ACTCACACATCAGAAAGTACATTAGGACCAAAGTCATTTGGTTCAGTCTCTGAGCATTGGATTGAGGCGTaGGGAGGAGTTTCTGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: THTSESTLGPKSFGSVSEHWIEA*GGVSGV Trigger: GACCCCAGAAACTCCTCCCCACGCCTCAATCCAATG...CTCAGAGACTGAACCAAATGACTTTGGTCCTAATGTACTTTCTGATGTGTGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS TCA 90 bp | CTACCTGTGTCAGCACGCAAATCTTCCGCTCCGCGGTGCTCTCCGTaGCGCCCGCTGCGGCCACCAGGCTCCTCCCGGCGCTTGGGGCCG | + |
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Preference number: 5 (lower is better) Translates to: LPVSARKSSAPRCSP*RPLRPPGSSRRLGP Trigger: CGGCCCCAAGCGCCGGGAGGAGCCTGGTGGCCGCAGCGGGCGTCACGGAGAGCACCGCGGAGCGGAAGATTTGCGTGCTGACACAGGTAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS CCA 90 bp | GAAGGCCTGGCAGGCCAGGGGTCAGTGCTAGGAGGCTGGGGGCCCTaGGCACGGAGAGCAGCCGGCCCTGTTCCAGAAGCCGCAGGACGT | + |
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Preference number: 5 (lower is better) Translates to: EGLAGQGSVLGGWGP*ARRAAGPVPEAAGR Trigger: ACGTCCTGCGGCTTCTGGAACAGGGCCGGCTGCTCTCCGTGCCCAGGGCCCCCAGCCTCCTAGCACTGACCCCTGGCCTGCCAGGCCTTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS CCA 90 bp | TCCCGAATGGTCCCCTTAGCATCTCGTACCAGGATGCGGCGGCAGTaGTCTGTCTCACCGAGCGCCTGCTGTCCGTCGCTGTCCCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: SRMVPLASRTRMRRQ*SVSPSACCPSLSPP Trigger: CGGAGGGGACAGCGACGGACAGCAGGCGCTCGGTGAGACAGACCACTGCCGCCGCATCCTGGTACGAGATGCTAAGGGGACCATTCGGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CAA 90 bp | GCATGCTGTGCCCACCCTTCCTCTTCCAGGCCTGCTCAGTATAGTCCACGGGGGAGAAGCCGCAGGACGTaGGAGGTGGCAAAGGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: ACCAHPSSSRPAQYSPRGRSRRT*EVAKAS Trigger: CGAGGCCTTTGCCACCTCCAACGTCCTGCGGCTTCT...CCCCCGTGGACTATACTGAGCAGGCCTGGAAGAGGAAGGGTGGGCACAGCATGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CAA 90 bp | GCATGCTGTGCCCACCCTTCCTCTTCCAGGCCTGCTCAGTATAGTCCACGGGGGGCCGAGGGCATTGGATaGAGGCGTGGGGAGGAGTTT | + |
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Preference number: 5 (lower is better) Translates to: ACCAHPSSSRPAQYSPRGAEGIG*RRGEEF Trigger: AAACTCCTCCCCACGCCTCAATCCAATGCCCTCGGC...CCCCCGTGGACTATACTGAGCAGGCCTGGAAGAGGAAGGGTGGGCACAGCATGC 62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CAA 90 bp | GGGCAGGTGGAGAGGCACATGCGCATGCTGTGCCCACCCTTCCTCTTCCAGGCCAGCTTTCTTGTCACTTaGGCCAGGGCTGCCTACTTT | + |
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Preference number: 5 (lower is better) Translates to: GQVERHMRMLCPPFLFQASFLVT*ARAAYF Trigger: AAAGTAGGCAGCCCTGGCCAAAGTGACAAGAAAGCT...GGCCTGGAAGAGGAAGGGTGGGCACAGCATGCGCATGTGCCTCTCCACCTGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS-3UTR CAA 90 bp | TCATTTGGTTCAGTCTCTGAGCTGAGGGCAGGTGGAGAGGCACATGCGCATGCTTCGAGGTCCAGGCCCTaGGGCAAGACAATTTCCCGA | + |
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Preference number: 5 (lower is better) Translates to: SFGSVSELRAGGEAHAHASRSRP*GKTISR Trigger: TCGGGAAATTGTCTTGCCCAAGGGCCTGGACCTCGA...AGCATGCGCATGTGCCTCTCCACCTGCCCTCAGCTCAGAGACTGAACCAAATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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| CDS CCA 72 bp | GGACGACGCCGAGGCCGAGGGCATTGGATTGAGGCGTaGGGAGGAGTTTCTGGGGTCAACCAAGGAGGTGCC | + |
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Preference number: 6 (lower is better) Translates to: GRRRGRGHWIEA*GGVSGVNQGGA Trigger: GGCACCTCCTTGGTTGACCCCAGAAACTCCTCCCCACGCCTCAATCCAATGCCCTCGGCCTCGGCGTCGTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037807.3 |
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