RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VAX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006270

Ensembl transcript IDs: ENSMUST00000172821.4

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CAGCGGCGGAGCCCGCGGCAGCGCCTGCACCCAGGGCCGGGAGGCTaGGCCCGCGCAACGCCGAGCCTAGAGCGCCAGTGGCACAGGGCG +
Preference number: 5 (lower is better)
Translates to: QRRSPRQRLHPGPGG*ARATPSLERQWHRA
Trigger: CGCCCTGTGCCACTGGCGCTCTAGGCTCGGCGTTGCGCGGGCCCAGCCTCCCGGCCCTGGGTGCAGGCGCTGCCGCGGGCTCCGCCGCTG
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS GCA 90 bp ACCGTGGCTGGCAGTCGGTGCTCCCGCGTGCAGTCCTCCCGGCCCTaGAGGCCCTGGGCCGGGAGCGCCGCCCACGGCCGGCTGGTGCTG +
Preference number: 5 (lower is better)
Translates to: TVAGSRCSRVQSSRP*RPWAGSAAHGRLVL
Trigger: CAGCACCAGCCGGCCGTGGGCGGCGCTCCCGGCCCAGGGCCTGCAGGGCCGGGAGGACTGCACGCGGGAGCACCGACTGCCAGCCACGGT
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 90 bp GGGCCGGGAGGCTGGGCCCGCGCAACGCCGAGCCTAGAGCGCCAGTaGCACAGGGCGGCAGCAAGGCGGGCAGCCCGGGAGGCGACAACA +
Preference number: 5 (lower is better)
Translates to: GPGGWARATPSLERQ*HRAAARRAAREATT
Trigger: TGTTGTCGCCTCCCGGGCTGCCCGCCTTGCTGCCGCCCTGTGCCACTGGCGCTCTAGGCTCGGCGTTGCGCGGGCCCAGCCTCCCGGCCC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS GCA 90 bp GCCGGAAGGCTCCCCTCGGCGCCCTTGATCTCCCGGCTCTCCTTGTaGGCGTTCTTCGAGACCCTGGCGGCCTCGGTGTCCGAGTGGCAC +
Preference number: 5 (lower is better)
Translates to: AGRLPSAPLISRLSL*AFFETLAASVSEWH
Trigger: GTGCCACTCGGACACCGAGGCCGCCAGGGTCTCGAAGAACGCGCACAAGGAGAGCCGGGAGATCAAGGGCGCCGAGGGGAGCCTTCCGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 90 bp GCGACAACAGGCGGCCTTGCTCCAAGAGCCGCAGCACGCTGCACGTaGCGGCGGTCTCCGACACCACCGAGCGCAGCTCCGAGTCCTTGC +
Preference number: 5 (lower is better)
Translates to: ATTGGLAPRAAARCT*RRSPTPPSAAPSPC
Trigger: GCAAGGACTCGGAGCTGCGCTCGGTGGTGTCGGAGACCGCCGCCACGTGCAGCGTGCTGCGGCTCTTGGAGCAAGGCCGCCTGTTGTCGC
70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 90 bp CTCGGACTAGGATCCGGCGACAGTAATCTGGGTCCGCTGAGGAATTaGATTTACTTTTGTTACAATCTTCCGAAGCGCCAGACCCGGAAA +
Preference number: 5 (lower is better)
Translates to: LGLGSGDSNLGPLRN*IYFCYNLPKRQTRK
Trigger: TTTCCGGGTCTGGCGCTTCGGAAGATTGTAACAAAAGTAAATCCAATTCCTCAGCGGACCCAGATTACTGTCGCCGGATCCTAGTCCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 72 bp AGCCCGCGGCAGCGCCTGCACCCAGGGCCGGGAGGCTaGGCCCGCGCAACGCCGAGCCTAGAGCGCCAGTGG +
Preference number: 6 (lower is better)
Translates to: SPRQRLHPGPGG*ARATPSLERQW
Trigger: CCACTGGCGCTCTAGGCTCGGCGTTGCGCGGGCCCAGCCTCCCGGCCCTGGGTGCAGGCGCTGCCGCGGGCT
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS GCA 72 bp AAGGCGGGCAGCCCGGGAGGCGACAACAGGCGGCCTTaGTCCAAGAGCCGCAGCACGCTGCACGTGGCGGCG +
Preference number: 6 (lower is better)
Translates to: KAGSPGGDNRRP*SKSRSTLHVAA
Trigger: CGCCGCCACGTGCAGCGTGCTGCGGCTCTTGGAGCAAGGCCGCCTGTTGTCGCCTCCCGGGCTGCCCGCCTT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 72 bp GGCGGCCTTGCTCCAAGAGCCGCAGCACGCTGCACGTaGCGGCGGTCTCCGACACCACCGAGCGCAGCTCCG +
Preference number: 6 (lower is better)
Translates to: GGLAPRAAARCT*RRSPTPPSAAP
Trigger: CGGAGCTGCGCTCGGTGGTGTCGGAGACCGCCGCCACGTGCAGCGTGCTGCGGCTCTTGGAGCAAGGCCGCC
74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CAA 72 bp GAAGCGCCAGACCCGGAAAAGGCGCCCTGCGGCTCCTaGAGGAAGGCGGCCGGAAGGCTCCCCTCGGCGCCC +
Preference number: 6 (lower is better)
Translates to: EAPDPEKAPCGS*RKAAGRLPSAP
Trigger: GGGCGCCGAGGGGAGCCTTCCGGCCGCCTTCCTCAAGGAGCCGCAGGGCGCCTTTTCCGGGTCTGGCGCTTC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CAA 72 bp CAAGGCGGGCAGCCCGGGAGGCGACAACAGGCGGCCTaGCTCCAAGAGCCGCAGCACGCTGCACGTGGCGGC +
Preference number: 6 (lower is better)
Translates to: QGGQPGRRQQAA*LQEPQHAARGG
Trigger: GCCGCCACGTGCAGCGTGCTGCGGCTCTTGGAGCAAGGCCGCCTGTTGTCGCCTCCCGGGCTGCCCGCCTTG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS TCA 72 bp AAGCGCCAGACCCGGAAAAGGCGCCCTGCGGCTCCTTaGGGAAGGCGGCCGGAAGGCTCCCCTCGGCGCCCT +
Preference number: 6 (lower is better)
Translates to: KRQTRKRRPAAP*GRRPEGSPRRP
Trigger: AGGGCGCCGAGGGGAGCCTTCCGGCCGCCTTCCTCAAGGAGCCGCAGGGCGCCTTTTCCGGGTCTGGCGCTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CAA 90 bp GCGGCCGGAAGGCTCCCCTCGGCGCCCTTGATCTCCCGGCTCTCCTaGTGCGCGTTCTTCGAGACCCTGGCGGCCTCGGTGTCCGAGTGG +
Preference number: 6 (lower is better)
Translates to: AAGRLPSAPLISRLS*CAFFETLAASVSEW
Trigger: CCACTCGGACACCGAGGCCGCCAGGGTCTCGAAGAACGCGCACAAGGAGAGCCGGGAGATCAAGGGCGCCGAGGGGAGCCTTCCGGCCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 72 bp AACCAGCCATCGTCAACGGGGCGGAGGACAGGCGGCTaGCGACAGAGCCTAGCAGCGACGGCACCGGCAGGC +
Preference number: 6 (lower is better)
Translates to: NQPSSTGRRTGG*RQSLAATAPAG
Trigger: GCCTGCCGGTGCCGTCGCTGCTAGGCTCTGTCGCCAGCCGCCTGTCCTCCGCCCCGTTGACGATGGCTGGTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CAA 90 bp TGCGGCTCCTTGAGGAAGGCGGCCGGAAGGCTCCCCTCGGCGCCCTaGATCTCCCGGCTCTCCTTGTGCGCGTTCTTCGAGACCCTGGCG +
Preference number: 6 (lower is better)
Translates to: CGSLRKAAGRLPSAP*ISRLSLCAFFETLA
Trigger: CGCCAGGGTCTCGAAGAACGCGCACAAGGAGAGCCGGGAGATCAAGGGCGCCGAGGGGAGCCTTCCGGCCGCCTTCCTCAAGGAGCCGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS GCA 72 bp CTCCCCTCGGCGCCCTTGATCTCCCGGCTCTCCTTGTaGGCGTTCTTCGAGACCCTGGCGGCCTCGGTGTCC +
Preference number: 6 (lower is better)
Translates to: LPSAPLISRLSL*AFFETLAASVS
Trigger: GGACACCGAGGCCGCCAGGGTCTCGAAGAACGCGCACAAGGAGAGCCGGGAGATCAAGGGCGCCGAGGGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CAA 72 bp AGGCTCCCCTCGGCGCCCTTGATCTCCCGGCTCTCCTaGTGCGCGTTCTTCGAGACCCTGGCGGCCTCGGTG +
Preference number: 6 (lower is better)
Translates to: RLPSAPLISRLS*CAFFETLAASV
Trigger: CACCGAGGCCGCCAGGGTCTCGAAGAACGCGCACAAGGAGAGCCGGGAGATCAAGGGCGCCGAGGGGAGCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CAA 90 bp CAATCTTCCGAAGCGCCAGACCCGGAAAAGGCGCCCTGCGGCTCCTaGAGGAAGGCGGCCGGAAGGCTCCCCTCGGCGCCCTTGATCTCC +
Preference number: 6 (lower is better)
Translates to: QSSEAPDPEKAPCGS*RKAAGRLPSAPLIS
Trigger: GGAGATCAAGGGCGCCGAGGGGAGCCTTCCGGCCGCCTTCCTCAAGGAGCCGCAGGGCGCCTTTTCCGGGTCTGGCGCTTCGGAAGATTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS GCA 72 bp CAATCTTCCGAAGCGCCAGACCCGGAAAAGGCGCCCTaGGGCTCCTTGAGGAAGGCGGCCGGAAGGCTCCCC +
Preference number: 6 (lower is better)
Translates to: QSSEAPDPEKAP*GSLRKAAGRLP
Trigger: GGGGAGCCTTCCGGCCGCCTTCCTCAAGGAGCCGCAGGGCGCCTTTTCCGGGTCTGGCGCTTCGGAAGATTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 72 bp TCTCCCGGCTCTCCTTGTGCGCGTTCTTCGAGACCCTaGCGGCCTCGGTGTCCGAGTGGCACCGGACGTCCA +
Preference number: 6 (lower is better)
Translates to: SPGSPCARSSRP*RPRCPSGTGRP
Trigger: TGGACGTCCGGTGCCACTCGGACACCGAGGCCGCCAGGGTCTCGAAGAACGCGCACAAGGAGAGCCGGGAGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CAA 72 bp TTGAGGAAGGCGGCCGGAAGGCTCCCCTCGGCGCCCTaGATCTCCCGGCTCTCCTTGTGCGCGTTCTTCGAG +
Preference number: 6 (lower is better)
Translates to: LRKAAGRLPSAP*ISRLSLCAFFE
Trigger: CTCGAAGAACGCGCACAAGGAGAGCCGGGAGATCAAGGGCGCCGAGGGGAGCCTTCCGGCCGCCTTCCTCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 72 bp GCGTTCTTCGAGACCCTGGCGGCCTCGGTGTCCGAGTaGCACCGGACGTCCATTTTGTCTGGTTTCCCGAAC +
Preference number: 6 (lower is better)
Translates to: AFFETLAASVSE*HRTSILSGFPN
Trigger: GTTCGGGAAACCAGACAAAATGGACGTCCGGTGCCACTCGGACACCGAGGCCGCCAGGGTCTCGAAGAACGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4
CDS CCA 72 bp GGATCCGGCGACAGTAATCTGGGTCCGCTGAGGAATTaGATTTACTTTTGTTACAATCTTCCGAAGCGCCAG +
Preference number: 6 (lower is better)
Translates to: GSGDSNLGPLRN*IYFCYNLPKRQ
Trigger: CTGGCGCTTCGGAAGATTGTAACAAAAGTAAATCCAATTCCTCAGCGGACCCAGATTACTGTCGCCGGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000172821.4