RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VAV2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000009621

Ensembl transcript IDs: ENSMUST00000056176.8, ENSMUST00000185188.8

Found 307 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAAGGGAGGCGGCCAGGGAGAGCTCCAGAGCTAGCGTGATTCAGTaGCGGTTGTGCAAGCTCTGGCTCCCGGCTGAGCCTAGTGTGTGC +
Preference number: 1 (lower is better)
Translates to: GREAARESSRASVIQ*RLCKLWLPAEPSVC
Trigger: GCACACACTAGGCTCAGCCGGGAGCCAGAGCTTGCACAACCGCCACTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGCCTCCCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR TCA 90 bp GCAGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTaGGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTCCAGGGC +
Preference number: 1 (lower is better)
Translates to: AEPSPQSALTLGRLG*GAVQSGLCPNSLQG
Trigger: GCCCTGGAGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR GCA 90 bp GCGGCCAGGGAGAGCTCCAGAGCTAGCGTGATTCAGTGGCGGTTGTaGAAGCTCTGGCTCCCGGCTGAGCCTAGTGTGTGCTACAGCACA +
Preference number: 1 (lower is better)
Translates to: AARESSRASVIQWRL*KLWLPAEPSVCYST
Trigger: TGTGCTGTAGCACACACTAGGCTCAGCCGGGAGCCAGAGCTTGCACAACCGCCACTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 90 bp CTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTGGGGGTaGGTCAGCAATGTCATCGTTCCACAGGCCCGTCTGAGGGAGGGG +
Preference number: 1 (lower is better)
Translates to: LQQAKSSTTDWVGWG*VSNVIVPQARLREG
Trigger: CCCCTCCCTCAGACGGGCCTGTGGAACGATGACATTGCTGACCCACCCCCAGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 90 bp AAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTaGGGGTGGGTCAGCAATGTCATCGTTCCACAGGCCCGTCTGAGG +
Preference number: 1 (lower is better)
Translates to: KGLQQAKSSTTDWVG*GWVSNVIVPQARLR
Trigger: CCTCAGACGGGCCTGTGGAACGATGACATTGCTGACCCACCCCCAGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 90 bp GGCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTaGGTGGGCTGGGGGTGGGTCAGCAATGTCATCGTTCCACAGGCC +
Preference number: 1 (lower is better)
Translates to: GSGKGLQQAKSSTTD*VGWGWVSNVIVPQA
Trigger: GGCCTGTGGAACGATGACATTGCTGACCCACCCCCAGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 90 bp TGCAGGCTTAGCAGGCAGTTCCCAGAACTATGGAGAAGCCAGAGGTaGACTTCAGAGCTGGGGAGACTCCCAAGAACATCCACGGGTCCT +
Preference number: 1 (lower is better)
Translates to: CRLSRQFPELWRSQR*TSELGRLPRTSTGP
Trigger: AGGACCCGTGGATGTTCTTGGGAGTCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCATAGTTCTGGGAACTGCCTGCTAAGCCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR GCA 90 bp CTGAGCCTAGTGTGTGCTACAGCACAGCTCGGCTCTGGTCCTGCCTaGCTCCCAAGACCTGACACATACTCTAGAGAGCAGCAGAAAAGA +
Preference number: 1 (lower is better)
Translates to: LSLVCATAQLGSGPA*LPRPDTYSREQQKR
Trigger: TCTTTTCTGCTGCTCTCTAGAGTATGTGTCAGGTCTTGGGAGGCAGGCAGGACCAGAGCCGAGCTGTGCTGTAGCACACACTAGGCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR TCA 90 bp GTTCCTAGCCTTGGCTCCCTACTTATCCAGGAAGGGGCAGCTAGATaGAGGGAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGC +
Preference number: 1 (lower is better)
Translates to: VPSLGSLLIQEGAAR*REKGQQGCVCLQVS
Trigger: GCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTCCCTTCATCTAGCTGCCCCTTCCTGGATAAGTAGGGAGCCAAGGCTAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR GCA 90 bp CAGAGATGCAGGCAGTGGCTTCTGACCTTTGCTGTCAACCACACATaGTTAGCCACACTGCCTGAGGTCCTTCTCCTTGGTGCTCTGAAT +
Preference number: 1 (lower is better)
Translates to: QRCRQWLLTFAVNHT*LATLPEVLLLGALN
Trigger: ATTCAGAGCACCAAGGAGAAGGACCTCAGGCAGTGTGGCTAAGCATGTGTGGTTGACAGCAAAGGTCAGAAGCCACTGCCTGCATCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 90 bp CATTGGCAAATGTACAGTTGTTCCATCAGGGGGTGCTGCTGGCTGTaGGACCCCCACATCCCTGACTTGCATGCATTGTGCTGCAAATGT +
Preference number: 1 (lower is better)
Translates to: HWQMYSCSIRGCCWL*DPHIPDLHALCCKC
Trigger: ACATTTGCAGCACAATGCATGCAAGTCAGGGATGTGGGGGTCCCACAGCCAGCAGCACCCCCTGATGGAACAACTGTACATTTGCCAATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR TCA 90 bp GCTTCTGACCTTTGCTGTCAACCACACATGCTTAGCCACACTGCCTaGGGTCCTTCTCCTTGGTGCTCTGAATGTGGCCAGCACAGATTT +
Preference number: 1 (lower is better)
Translates to: ASDLCCQPHMLSHTA*GPSPWCSECGQHRF
Trigger: AAATCTGTGCTGGCCACATTCAGAGCACCAAGGAGAAGGACCTCAGGCAGTGTGGCTAAGCATGTGTGGTTGACAGCAAAGGTCAGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp GTTCCACAGGCCCGTCTGAGGGAGGGGCCTGCCCGGTCAGCGCTCAGCAGGACCGCAGGCAGTGGCTTCTaGCCTTTGCTGTCAACCACA +
Preference number: 2 (lower is better)
Translates to: VPQARLREGPARSALSRTAGSGF*PLLSTT
Trigger: TGTGGTTGACAGCAAAGGTCAGAAGCCACTGCCTGC...GGTCCTGCTGAGCGCTGACCGGGCAGGCCCCTCCCTCAGACGGGCCTGTGGAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CAA 90 bp GAGGCGGCCAGGGAGAGCTCCAGAGCTAGCGTGATTCAGTGGCGGTaGTGCAAGCTCTGGCTCCCGGCTGAGCCTAGTGTGTGCTACAGC +
Preference number: 2 (lower is better)
Translates to: EAARESSRASVIQWR*CKLWLPAEPSVCYS
Trigger: GCTGTAGCACACACTAGGCTCAGCCGGGAGCCAGAGCTTGCACAACCGCCACTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp CAGGCAGATCAGTGTGGGGCAGCAGATGGGCCTGGGAAGGAACCCCCTGCTGTCGGCTCTGGTCCTGCCTaGCTCCCAAGACCTGACACA +
Preference number: 2 (lower is better)
Translates to: QADQCGAADGPGKEPPAVGSGPA*LPRPDT
Trigger: TGTGTCAGGTCTTGGGAGGCAGGCAGGACCAGAGCC...GACAGCAGGGGGTTCCTTCCCAGGCCCATCTGCTGCCCCACACTGATCTGCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTTCTGAGGGAGGGGCCTaGCCGGTCAGCGCTCAGCAG +
Preference number: 2 (lower is better)
Translates to: RALPTVCTYTRQARLRSCSEGGA*PVSAQQ
Trigger: CTGCTGAGCGCTGACCGGGCAGGCCCCTCCCTCAGA...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTGTGTGGGGCAGCAGATaGGCCTGGGAAGGAACCCCC +
Preference number: 2 (lower is better)
Translates to: RALPTVCTYTRQARLRSCVWGSR*AWEGTP
Trigger: GGGGGTTCCTTCCCAGGCCCATCTGCTGCCCCACAC...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp CTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGGCTGAGCCTAGTGTGTaGTACAGCACAGCTCGGCTC +
Preference number: 2 (lower is better)
Translates to: LGRKPGAGQPSQRPKARKAEPSV*YSTARL
Trigger: GAGCCGAGCTGTGCTGTAGCACACACTAGGCTCAGC...CTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTAGCAGTACCACTGACTaGGTGGGCTGGGGGTGGGTC +
Preference number: 2 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGASSTTD*VGWGWV
Trigger: GACCCACCCCCAGCCCACCCAGTCAGTGGTACTGCT...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGGCTGCATGTGGACACTaGGCTGGAGGACACGAGGCC +
Preference number: 2 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLAACGH*AGGHEA
Trigger: GGCCTCGTGTCCTCCAGCCCAGTGTCCACATGCAGC...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp ACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGGGCAGGCAGTGGCTTCTaGCCTTTGCTGTCAACCACA +
Preference number: 2 (lower is better)
Translates to: TPDSVPRSKVVHCPTPVGAGSGF*PLLSTT
Trigger: TGTGGTTGACAGCAAAGGTCAGAAGCCACTGCCTGC...CCCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGCGCTCAGCAGGACCCTaGTGTGTTAGGAAGGGAGGC +
Preference number: 2 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLRSAGP*CVRKGG
Trigger: GCCTCCCTTCCTAACACATCAGGGTCCTGCTGAGCG...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp TCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCCGCTCAGCAGGACCCTaGTGTGTTAGGAAGGGAGGC +
Preference number: 2 (lower is better)
Translates to: SPGSRAEKTCFLAQERGFRSAGP*CVRKGG
Trigger: GCCTCCCTTCCTAACACATCAGGGTCCTGCTGAGCG...GAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTAAAGAGCAGTACCACTaGCTGGGTGGGCTGGGGGTG +
Preference number: 2 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSKEQYH*LGGLGV
Trigger: CACCCCCAGCCCACCCAGTCAGTGGTACTGCTCTTT...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GAGCCTAGTGTGTGCTACAGCACAGCTCGGCTCTGGTCCTGCCTGCCTCCCAAGTGGAGAAGCCAGAGGTaGACTTCAGAGCTGGGGAGA +
Preference number: 2 (lower is better)
Translates to: EPSVCYSTARLWSCLPPKWRSQR*TSELGR
Trigger: TCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCA...CTTGGGAGGCAGGCAGGACCAGAGCCGAGCTGTGCTGTAGCACACACTAGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTACTGACTGGGTGGGCTaGGGGTGGGTCAGCAATGTC +
Preference number: 2 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSTDWVG*GWVSNV
Trigger: GACATTGCTGACCCACCCCCAGCCCACCCAGTCAGT...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGGCTCCAGAGCTAGCGTaGTTCAGTGGCGGTTGTGCA +
Preference number: 2 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLAPELA*FSGGCA
Trigger: TGCACAACCGCCACTGAATCACGCTAGCTCTGGAGC...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp TTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGCGACCGTGGTTTGGAATaGAGAAGACCCAAGAGTGCC +
Preference number: 2 (lower is better)
Translates to: LGGNQGLANQARGQRPGSDRGLE*RRPKSA
Trigger: GGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTC...GCTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTTGGGTGGGCTGGGGGTaGGTCAGCAATGTCATCGTT +
Preference number: 2 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSWVGWG*VSNVIV
Trigger: AACGATGACATTGCTGACCCACCCCCAGCCCACCCA...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp CTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGTTCTACCCTGCCCTTTaGGGTTCACAGATGTGTCCC +
Preference number: 2 (lower is better)
Translates to: LGRKPGAGQPSQRPKARKFYPAL*GSQMCP
Trigger: GGGACACATCTGTGAACCCCAAAGGGCAGGGTAGAA...CTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTCCAGCATGCTGCATGTaGACACTGGGCTGGAGGACA +
Preference number: 2 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSPACCM*TLGWRT
Trigger: TGTCCTCCAGCCCAGTGTCCACATGCAGCATGCTGG...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp CCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAATTCTCCTTGGTGCTCTaGATGTGGCCAGCACAGATT +
Preference number: 2 (lower is better)
Translates to: PWEETRGWPTKPEAKGQEFSLVL*MWPAQI
Trigger: AATCTGTGCTGGCCACATTCAGAGCACCAAGGAGAA...TTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp CACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAAGGGCGGGCAGAGCCCAAGAGCACTTATTTTaGGCTGGCCATAGGCCCAGT +
Preference number: 2 (lower is better)
Translates to: HRVLGGCSCGSHGRAGRAQEHLF*AGHRPS
Trigger: ACTGGGCCTATGGCCAGCTCAAAATAAGTGCTCTTG...GGCTCTGCCCGCCCTTCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp GAGCCTAGTGTGTGCTACAGCACAGCTCGGCTCTGGTCCTGCCTGCCTCCCAAGCATCTAAACCAGAGATaGAGGCAGTGGCTTCTGACC +
Preference number: 2 (lower is better)
Translates to: EPSVCYSTARLWSCLPPKHLNQR*RQWLLT
Trigger: GGTCAGAAGCCACTGCCTGCATCTCTGGTTTAGATG...CTTGGGAGGCAGGCAGGACCAGAGCCGAGCTGTGCTGTAGCACACACTAGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GTCGCTTCCGGCTGCTCCCCGTCTCATGATCCCTCCCTGCTTCCCCTAACATCCCAGTTCCCAGAACTATaGAGAAGCCAGAGGTGGACT +
Preference number: 2 (lower is better)
Translates to: VASGCSPSHDPSLLPLTSQFPEL*RSQRWT
Trigger: AGTCCACCTCTGGCTTCTCCATAGTTCTGGGAACTG...GGATGTTAGGGGAAGCAGGGAGGGATCATGAGACGGGGAGCAGCCGGAAGCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAGGCAGCAGATGGGCCTaGGAAGGAACCCCCTGCTGT +
Preference number: 2 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGGSRWA*EGTPCC
Trigger: ACAGCAGGGGGTTCCTTCCCAGGCCCATCTGCTGCC...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTACAGGCAGATCAGTGTaGGGCAGCAGATGGGCCTGG +
Preference number: 2 (lower is better)
Translates to: AQERGFNKQRAVPLTGWATGRSV*GSRWAW
Trigger: CCAGGCCCATCTGCTGCCCCACACTGATCTGCCTGT...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp AGTAAGCTTTCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGGAGGAAACCAGGGGCTaGCCAACCAAGCCAGAGGCC +
Preference number: 2 (lower is better)
Translates to: SKLSLRTPWEETRGWPTKEETRG*PTKPEA
Trigger: GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTC...CTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGAAAGCTTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGTCACTCAGAACTCCTTaGGAGGAAACCAGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLSLRTP*EETRGW
Trigger: CCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAAAAGAGCAGTACCACTaGCTGGGTGGGCTGGGGGTG +
Preference number: 2 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGKEQYH*LGGLGV
Trigger: CACCCCCAGCCCACCCAGTCAGTGGTACTGCTCTTT...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp ATGTTCACAGCTGATCTCAGGCCCCCAGTCCTTAGACGGTGTCCAGTCTCCTGCGAAGGGGCAGCTAGATaGAGGGAGAAAGGGCAGCAA +
Preference number: 2 (lower is better)
Translates to: MFTADLRPPVLRRCPVSCEGAAR*REKGQQ
Trigger: TTGCTGCCCTTTCTCCCTTCATCTAGCTGCCCCTTC...GCAGGAGACTGGACACCGTCTAAGGACTGGGGGCCTGAGATCAGCTGTGAACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp GTCGCTTCCGGCTGCTCCCCGTCTCATGATCCCTCCCTGCTTCCCCTAACATCCGTGGCTTCTGACCTTTaGTGTCAACCACACATGCTT +
Preference number: 2 (lower is better)
Translates to: VASGCSPSHDPSLLPLTSVASDL*CQPHML
Trigger: AAGCATGTGTGGTTGACAGCAAAGGTCAGAAGCCAC...GGATGTTAGGGGAAGCAGGGAGGGATCATGAGACGGGGAGCAGCCGGAAGCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp AACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAAGGGCGTGGAGAAGCCAGAGGTaGACTTCAGAGCTGGGGAGA +
Preference number: 2 (lower is better)
Translates to: NGKHRVLGGCSCGSHGRAWRSQR*TSELGR
Trigger: TCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCA...CGCCCTTCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGACCTTTCCACCAGCCCTaGTCCCCACCAATTCGGCTG +
Preference number: 2 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGPFHQP*SPPIRL
Trigger: CAGCCGAATTGGTGGGGACCAGGGCTGGTGGAAAGG...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp GTCGCTTCCGGCTGCTCCCCGTCTCATGATCCCTCCCTGCTTCCCCTAACATCCCAGAAGACCCAAGAGTaGCTTTCTGGAAAGAAAAGC +
Preference number: 2 (lower is better)
Translates to: VASGCSPSHDPSLLPLTSQKTQE*LSGKKS
Trigger: GCTTTTCTTTCCAGAAAGGCACTCTTGGGTCTTCTG...GGATGTTAGGGGAAGCAGGGAGGGATCATGAGACGGGGAGCAGCCGGAAGCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp CAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGACTGACTGGGTGGGCTaGGGGTGGGTCAGCAATGTC +
Preference number: 2 (lower is better)
Translates to: QGREDLFLGSGKGLQQAKTDWVG*GWVSNV
Trigger: GACATTGCTGACCCACCCCCAGCCCACCCAGTCAGT...CTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp TCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCGTGGCTTCTGACCTTTaGTGTCAACCACACATGCTT +
Preference number: 2 (lower is better)
Translates to: SPGSRAEKTCFLAQERGFVASDL*CQPHML
Trigger: AAGCATGTGTGGTTGACAGCAAAGGTCAGAAGCCAC...GAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp AACAAACAGACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTGTACCACTGACTGGGTaGGCTGGGGGTGGGTCAGCA +
Preference number: 2 (lower is better)
Translates to: NKQTKTESTGCWEGVHVVVPLTG*AGGGSA
Trigger: TGCTGACCCACCCCCAGCCCACCCAGTCAGTGGTAC...AACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTCTGTTTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCAGCAGTACCACTGACTaGGTGGGCTGGGGGTGGGTC +
Preference number: 2 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELSSTTD*VGWGWV
Trigger: GACCCACCCCCAGCCCACCCAGTCAGTGGTACTGCT...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp AACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAAGGGCGACCAGGAGAAGGAAGTaGAAGAGCAGAGACACCCAA +
Preference number: 2 (lower is better)
Translates to: NGKHRVLGGCSCGSHGRATRRRK*KSRDTQ
Trigger: TTGGGTGTCTCTGCTCTTCCACTTCCTTCTCCTGGT...CGCCCTTCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTCAGAAGACCCAAGAGTaGCTTTCTGGAAAGAAAAGC +
Preference number: 2 (lower is better)
Translates to: RALPTVCTYTRQARLRSCQKTQE*LSGKKS
Trigger: GCTTTTCTTTCCAGAAAGGCACTCTTGGGTCTTCTG...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CAA 90 bp GGAAGGAACCCCCTGCTGTCCCTAGCCCTCCCTAGCCACCATGAGTaGAGTTCTAGGTTTCTGAACAATCATCTAAACCAGAGATGCAGG +
Preference number: 2 (lower is better)
Translates to: GRNPLLSLALPSHHE*SSRFLNNHLNQRCR
Trigger: CCTGCATCTCTGGTTTAGATGATTGTTCAGAAACCTAGAACTCAACTCATGGTGGCTAGGGAGGGCTAGGGACAGCAGGGGGTTCCTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCGCTGAGCCTAGTGTGTaGTACAGCACAGCTCGGCTC +
Preference number: 2 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELAEPSV*YSTARL
Trigger: GAGCCGAGCTGTGCTGTAGCACACACTAGGCTCAGC...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAACCAGGAGAAGGAAGTaGAAGAGCAGAGACACCCAA +
Preference number: 2 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGTRRRK*KSRDTQ
Trigger: TTGGGTGTCTCTGCTCTTCCACTTCCTTCTCCTGGT...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR TCA 90 bp CAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGTTCTCCTTGGTGCTCTaGATGTGGCCAGCACAGATT +
Preference number: 2 (lower is better)
Translates to: QGREDLFLGSGKGLQQAKFSLVL*MWPAQI
Trigger: AATCTGTGCTGGCCACATTCAGAGCACCAAGGAGAA...CTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR GCA 90 bp ACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGCATCTAAACCAGAGATaGAGGCAGTGGCTTCTGACC +
Preference number: 2 (lower is better)
Translates to: TCFLAQERGFNKQRAVPLHLNQR*RQWLLT
Trigger: GGTCAGAAGCCACTGCCTGCATCTCTGGTTTAGATG...CAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CCA 90 bp ACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGCAGTTCCCAGAACTATaGAGAAGCCAGAGGTGGACT +
Preference number: 2 (lower is better)
Translates to: TCFLAQERGFNKQRAVPLQFPEL*RSQRWT
Trigger: AGTCCACCTCTGGCTTCTCCATAGTTCTGGGAACTG...CAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR TCA 72 bp GGGAGGGGCCTGCCCGGTCAGCGCTCAGCAGGACCCTaGTGTGTTAGGAAGGGAGGCGGCCAGGGAGAGCTC +
Preference number: 3 (lower is better)
Translates to: GRGLPGQRSAGP*CVRKGGGQGEL
Trigger: GAGCTCTCCCTGGCCGCCTCCCTTCCTAACACATCAGGGTCCTGCTGAGCGCTGACCGGGCAGGCCCCTCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR TCA 72 bp GGTGGGTCAGCAATGTCATCGTTCCACAGGCCCGTCTaGGGGAGGGGCCTGCCCGGTCAGCGCTCAGCAGGA +
Preference number: 3 (lower is better)
Translates to: GGSAMSSFHRPV*GRGLPGQRSAG
Trigger: TCCTGCTGAGCGCTGACCGGGCAGGCCCCTCCCTCAGACGGGCCTGTGGAACGATGACATTGCTGACCCACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR TCA 72 bp GAAGGGAGGCGGCCAGGGAGAGCTCCAGAGCTAGCGTaGTTCAGTGGCGGTTGTGCAAGCTCTGGCTCCCGG +
Preference number: 3 (lower is better)
Translates to: EGRRPGRAPELA*FSGGCASSGSR
Trigger: CCGGGAGCCAGAGCTTGCACAACCGCCACTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGCCTCCCTTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp GCGGCCAGGGAGAGCTCCAGAGCTAGCGTGATTCAGTaGCGGTTGTGCAAGCTCTGGCTCCCGGCTGAGCCT +
Preference number: 3 (lower is better)
Translates to: AARESSRASVIQ*RLCKLWLPAEP
Trigger: AGGCTCAGCCGGGAGCCAGAGCTTGCACAACCGCCACTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp GCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTaGGCTGGAGGACACGAGGCCAACCCCGGACAGTGT +
Preference number: 3 (lower is better)
Translates to: ASPNIQHAACGH*AGGHEANPGQC
Trigger: ACACTGTCCGGGGTTGGCCTCGTGTCCTCCAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp AAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTaGTTCACACGGAAGGGCGGGCAGAGCCCTCCCCAC +
Preference number: 3 (lower is better)
Translates to: KRKAQGVGRVFM*FTRKGGQSPPH
Trigger: GTGGGGAGGGCTCTGCCCGCCCTTCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CAA 90 bp GAGCCTAGTGTGTGCTACAGCACAGCTCGGCTCTGGTCCTGCCTGCCTCCCAAGAACCGATCCGCCCATTaGTCTCTCCTTTCCACCAGC +
Preference number: 3 (lower is better)
Translates to: EPSVCYSTARLWSCLPPKNRSAH*SLLSTS
Trigger: GCTGGTGGAAAGGAGAGACAAATGGGCGGATCGGTT...CTTGGGAGGCAGGCAGGACCAGAGCCGAGCTGTGCTGTAGCACACACTAGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
3UTR GCA 72 bp TGTCCAGTCTCCTGCAGAGGTGCCCACACACCGGCCTaGCCAGCACCCTGCTCAGTGCAGCTCAAAAACAAA +
Preference number: 3 (lower is better)
Translates to: CPVSCRGAHTPA*PAPCSVQLKNK
Trigger: TTTGTTTTTGAGCTGCACTGAGCAGGGTGCTGGGCAGGCCGGTGTGTGGGCACCTCTGCAGGAGACTGGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp TCCAGGGCAAACCCTTCGCTCCCAGTTTCTCATAGCTaGGGCTTTCTAAGGTGTCGCTTCCGGCTGCTCCCC +
Preference number: 3 (lower is better)
Translates to: SRANPSLPVSHS*GFLRCRFRLLP
Trigger: GGGGAGCAGCCGGAAGCGACACCTTAGAAAGCCCCAGCTATGAGAAACTGGGAGCGAAGGGTTTGCCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR GCA 72 bp GTGTGTGCTACAGCACAGCTCGGCTCTGGTCCTGCCTaGCTCCCAAGACCTGACACATACTCTAGAGAGCAG +
Preference number: 3 (lower is better)
Translates to: VCATAQLGSGPA*LPRPDTYSREQ
Trigger: CTGCTCTCTAGAGTATGTGTCAGGTCTTGGGAGGCAGGCAGGACCAGAGCCGAGCTGTGCTGTAGCACACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp CTTTCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTaGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGCA +
Preference number: 3 (lower is better)
Translates to: LSLRTPWEETRG*PTKPEAKGQEA
Trigger: TGCTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp TACACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTaGCCTGTGCCCCAACTCTCTCCAGGGCAAACCCTT +
Preference number: 3 (lower is better)
Translates to: YTRQARLRSCAK*PVPQLSPGQTL
Trigger: AAGGGTTTGCCCTGGAGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGTGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp GAACATCCACGGGTCCTGTCCAGGTCTCGTCCTCACTaGACGCCTTCCTCTTCCACGTACGTCGAAGGAAAC +
Preference number: 3 (lower is better)
Translates to: EHPRVLSRSRPH*TPSSSTYVEGN
Trigger: GTTTCCTTCGACGTACGTGGAAGAGGAAGGCGTCCAGTGAGGACGAGACCTGGACAGGACCCGTGGATGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
3UTR-3UTR CAA 90 bp TCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCTTTCTACCCTGCCCTTaGGGGTTCACAGATGTGTCC +
Preference number: 3 (lower is better)
Translates to: SPGSRAEKTCFLAQERGFFLPCP*GFTDVS
Trigger: GGACACATCTGTGAACCCCAAAGGGCAGGGTAGAAA...GAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR TCA 72 bp TTTCTAAGGTGTCGCTTCCGGCTGCTCCCCGTCTCATaGTCCCTCCCTGCTTCCCCTAACATCCAGCATGCT +
Preference number: 3 (lower is better)
Translates to: FLRCRFRLLPVS*SLPASPNIQHA
Trigger: AGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATCATGAGACGGGGAGCAGCCGGAAGCGACACCTTAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp CAGAACTATGGAGAAGCCAGAGGTGGACTTCAGAGCTaGGGAGACTCCCAAGAACATCCACGGGTCCTGTCC +
Preference number: 3 (lower is better)
Translates to: QNYGEARGGLQS*GDSQEHPRVLS
Trigger: GGACAGGACCCGTGGATGTTCTTGGGAGTCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCATAGTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp TCTACCCTGCCCTTTGGGGTTCACAGATGTGTCCCCTaGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCA +
Preference number: 3 (lower is better)
Translates to: STLPFGVHRCVP*QQGREDLFLGS
Trigger: TGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACACATCTGTGAACCCCAAAGGGCAGGGTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp ATGTACAGTTGTTCCATCAGGGGGTGCTGCTGGCTGTaGGACCCCCACATCCCTGACTTGCATGCATTGTGC +
Preference number: 3 (lower is better)
Translates to: MYSCSIRGCCWL*DPHIPDLHALC
Trigger: GCACAATGCATGCAAGTCAGGGATGTGGGGGTCCCACAGCCAGCAGCACCCCCTGATGGAACAACTGTACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR-3UTR CAA 90 bp ATGTTCACAGCTGATCTCAGGCCCCCAGTCCTTAGACGGTGTCCAGTCTCCTGCTTTCTACCCTGCCCTTaGGGGTTCACAGATGTGTCC +
Preference number: 3 (lower is better)
Translates to: MFTADLRPPVLRRCPVSCFLPCP*GFTDVS
Trigger: GGACACATCTGTGAACCCCAAAGGGCAGGGTAGAAA...GCAGGAGACTGGACACCGTCTAAGGACTGGGGGCCTGAGATCAGCTGTGAACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp AGCAGGCAGTTCCCAGAACTATGGAGAAGCCAGAGGTaGACTTCAGAGCTGGGGAGACTCCCAAGAACATCC +
Preference number: 3 (lower is better)
Translates to: SRQFPELWRSQR*TSELGRLPRTS
Trigger: GGATGTTCTTGGGAGTCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCATAGTTCTGGGAACTGCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp AACAGCTGCAGGCTTAGCAGGCAGTTCCCAGAACTATaGAGAAGCCAGAGGTGGACTTCAGAGCTGGGGAGA +
Preference number: 3 (lower is better)
Translates to: NSCRLSRQFPEL*RSQRWTSELGR
Trigger: TCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCATAGTTCTGGGAACTGCCTGCTAAGCCTGCAGCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CCA 72 bp AAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTaGGTGGGCTGGGGGTGGGTCAGCAATGTCATCGTT +
Preference number: 3 (lower is better)
Translates to: KGLQQAKSSTTD*VGWGWVSNVIV
Trigger: AACGATGACATTGCTGACCCACCCCCAGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR GCA 72 bp AGGCAGTGGCTTCTGACCTTTGCTGTCAACCACACATaGTTAGCCACACTGCCTGAGGTCCTTCTCCTTGGT +
Preference number: 3 (lower is better)
Translates to: RQWLLTFAVNHT*LATLPEVLLLG
Trigger: ACCAAGGAGAAGGACCTCAGGCAGTGTGGCTAAGCATGTGTGGTTGACAGCAAAGGTCAGAAGCCACTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR GCA 72 bp AAAGGCCAGCAGACTCCTGGTGACCGTGGTTTGGAATaGAGAAGACCCAAGAGTGCCTTTCTGGAAAGAAAA +
Preference number: 3 (lower is better)
Translates to: KGQQTPGDRGLE*RRPKSAFLERK
Trigger: TTTTCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGGAGTCTGCTGGCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR GCA 72 bp AGTTCTAGGTTTCTGAACAATCATCTAAACCAGAGATaGAGGCAGTGGCTTCTGACCTTTGCTGTCAACCAC +
Preference number: 3 (lower is better)
Translates to: SSRFLNNHLNQR*RQWLLTFAVNH
Trigger: GTGGTTGACAGCAAAGGTCAGAAGCCACTGCCTGCATCTCTGGTTTAGATGATTGTTCAGAAACCTAGAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp TTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGCCCGTCGCGCAGCGCCTaGGCCAGGTCGAAGACCACC +
Preference number: 4 (lower is better)
Translates to: LGGNQGLANQARGQRPGSPSRSA*ARSKTT
Trigger: GGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGG...GCTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp CAGGCAGATCAGTGTGGGGCAGCAGATGGGCCTGGGAAGGAACCCCCTGCTGTCGGCCACACGACGCGGTaGTTGGGCGGCAGGACCTTG +
Preference number: 4 (lower is better)
Translates to: QADQCGAADGPGKEPPAVGHTTR*LGGRTL
Trigger: CAAGGTCCTGCCGCCCAACCACCGCGTCGTGTGGCC...GACAGCAGGGGGTTCCTTCCCAGGCCCATCTGCTGCCCCACACTGATCTGCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CAGATGGGCCTGGGAAGGAACCCCCTGCTGTCCCTAGCCCTCCCTAGCCACCATGGACCTTGCAGTCGATaGGCCAGCGGCCGCATTGCC +
Preference number: 4 (lower is better)
Translates to: QMGLGRNPLLSLALPSHHGPCSR*ASGRIA
Trigger: GGCAATGCGGCCGCTGGCTCATCGACTGCAAGGTCC...ATGGTGGCTAGGGAGGGCTAGGGACAGCAGGGGGTTCCTTCCCAGGCCCATCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp TCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCCCGTCGCGCAGCGCCTaGGCCAGGTCGAAGACCACC +
Preference number: 4 (lower is better)
Translates to: SLRTPWEETRGWPTKPEAPSRSA*ARSKTT
Trigger: GGTGGTCTTCGACCTGGCGCAGGCGCTGCGCGACGG...GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp AACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGGGAGCAGAAGGGGCCTaGGGGGCAAAGCTGAGGCCC +
Preference number: 4 (lower is better)
Translates to: NPGQCPQEQGSALSHSSGGAEGA*GAKLRP
Trigger: GGGCCTCAGCTTTGCCCCCCAGGCCCCTTCTGCTCC...CCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTGGACCTTGCAGTCGATaGGCCAGCGGCCGCATTGCC +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGAGPCSR*ASGRIA
Trigger: GGCAATGCGGCCGCTGGCTCATCGACTGCAAGGTCC...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp CAGCAGATGGGCCTGGGAAGGAACCCCCTGCTGTCCCTAGCCCTCCCTAGCCACTCCTTGAGCAGCAGGTaGTACTTCAGCACCCGTTGC +
Preference number: 4 (lower is better)
Translates to: QQMGLGRNPLLSLALPSHSLSSR*YFSTRC
Trigger: GCAACGGGTGCTGAAGTACCACCTGCTGCTCAAGGA...GTGGCTAGGGAGGGCTAGGGACAGCAGGGGGTTCCTTCCCAGGCCCATCTGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GTTCCACAGGCCCGTCTGAGGGAGGGGCCTGCCCGGTCAGCGCTCAGCAGGACCTCATCGGTCATCTTGTaGAAGAGCAGCTCAATGACC +
Preference number: 4 (lower is better)
Translates to: VPQARLREGPARSALSRTSSVIL*KSSSMT
Trigger: GGTCATTGAGCTGCTCTTCCACAAGATGACCGATGA...GGTCCTGCTGAGCGCTGACCGGGCAGGCCCCTCCCTCAGACGGGCCTGTGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGGGCTCAGGAGCTCCTTaGGCAGCAGGTGGTACTTCA +
Preference number: 4 (lower is better)
Translates to: LGRKPGAGQPSQRPKARKGSGAP*AAGGTS
Trigger: TGAAGTACCACCTGCTGCTCAAGGAGCTCCTGAGCC...CTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp CTGCATGTGGACACTGGGCTGGAGGACACGAGGCCAACCCCGGACAGTGTCCCCAAGAACTGGGACATCTaGGGCCGGAAGTTGATGTCC +
Preference number: 4 (lower is better)
Translates to: LHVDTGLEDTRPTPDSVPKNWDI*GRKLMS
Trigger: GGACATCAACTTCCGGCCGCAGATGTCCCAGTTCTT...GGGGACACTGTCCGGGGTTGGCCTCGTGTCCTCCAGCCCAGTGTCCACATGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR TCA 90 bp CAGATGGGCCTGGGAAGGAACCCCCTGCTGTCCCTAGCCCTCCCTAGCCACCATCTGATGGAAATGGCCTaGTCCCTTTGCTCTGTGCGA +
Preference number: 4 (lower is better)
Translates to: QMGLGRNPLLSLALPSHHLMEMA*SLCSVR
Trigger: TCGCACAGAGCAAAGGGATCAGGCCATTTCCATCAG...ATGGTGGCTAGGGAGGGCTAGGGACAGCAGGGGGTTCCTTCCCAGGCCCATCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CAGGCAGATCAGTGTGGGGCAGCAGATGGGCCTGGGAAGGAACCCCCTGCTGTCTTGAACTTGCCATCCTaGACCCTGAGTGTGCACTCC +
Preference number: 4 (lower is better)
Translates to: QADQCGAADGPGKEPPAVLNLPS*TLSVHS
Trigger: GGAGTGCACACTCAGGGTTCAGGATGGCAAGTTCAA...GACAGCAGGGGGTTCCTTCCCAGGCCCATCTGCTGCCCCACACTGATCTGCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp CTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGCACTCCTCCACTTTCTaGCTGAAGTCCTCTCGGCTG +
Preference number: 4 (lower is better)
Translates to: LGRKPGAGQPSQRPKARKHSSTF*LKSSRL
Trigger: CAGCCGAGAGGACTTCAGGCAGAAAGTGGAGGAGTG...CTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp TCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCTACTTCAGCACCCGTTaGATGGGCACCACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: SLRTPWEETRGWPTKPEAYFSTR*MGTTSR
Trigger: CCTGCTGGTGGTGCCCATGCAACGGGTGCTGAAGTA...GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GTCGCTTCCGGCTGCTCCCCGTCTCATGATCCCTCCCTGCTTCCCCTAACATCCAACCATCTTGGGACCTaGTCCTGCTCCAGGAGCATC +
Preference number: 4 (lower is better)
Translates to: VASGCSPSHDPSLLPLTSNHLGT*SCSRSI
Trigger: GATGCTCCTGGAGCAGGACCAGGTCCCAAGATGGTT...GGATGTTAGGGGAAGCAGGGAGGGATCATGAGACGGGGAGCAGCCGGAAGCGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GAGCCTAGTGTGTGCTACAGCACAGCTCGGCTCTGGTCCTGCCTGCCTCCCAAGGCGTTCTGCCTCTGCTaGACGCTCTCTGATGAGGTA +
Preference number: 4 (lower is better)
Translates to: EPSVCYSTARLWSCLPPKAFCLC*TLSDEV
Trigger: TACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGC...CTTGGGAGGCAGGCAGGACCAGAGCCGAGCTGTGCTGTAGCACACACTAGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTCCTTTCCACCAGCCCTaGTCCCCACCAATTCGGCTG +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGAPFHQP*SPPIRL
Trigger: CAGCCGAATTGGTGGGGACCAGGGCTGGTGGAAAGG...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR CCA 90 bp CCAACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGACTGCAGAGATGACCTaGGACATCTGCGGCCGGAAG +
Preference number: 4 (lower is better)
Translates to: PTPDSVPRSKVVHCPTPVTAEMT*DICGRK
Trigger: CTTCCGGCCGCAGATGTCCCAGGTCATCTCTGCAGT...CACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp ACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGGCTGATGGAAATGGCCTaGTCCCTTTGCTCTGTGCGA +
Preference number: 4 (lower is better)
Translates to: TPDSVPRSKVVHCPTPVGLMEMA*SLCSVR
Trigger: TCGCACAGAGCAAAGGGATCAGGCCATTTCCATCAG...CCCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp TCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCCAATGTCCTCCAGGGTaGGGTAGTACTTGGCCTCGG +
Preference number: 4 (lower is better)
Translates to: SPGSRAEKTCFLAQERGFQCPPG*GSTWPR
Trigger: CCGAGGCCAAGTACTACCGCACCCTGGAGGACATTG...GAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp CTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGACCACCAGCAGGTCTTaGAGCTTGAACTTGCCATCC +
Preference number: 4 (lower is better)
Translates to: LGRKPGAGQPSQRPKARKTTSRS*SLNLPS
Trigger: GGATGGCAAGTTCAAGCTGCAAGACCTGCTGGTGGT...CTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTCAGGCATTCCTTGTGTaGCCCGACGCCACATCTGGT +
Preference number: 4 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSQAFLV*PDATSG
Trigger: ACCAGATGTGGCGTCGGGGCACACAAGGAATGCCTG...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTACACGACGCGGTGGTTaGGCGGCAGGACCTTGCAGT +
Preference number: 4 (lower is better)
Translates to: AQERGFNKQRAVPLTGWATRRGG*AAGPCS
Trigger: ACTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGT...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGGGTCGGTCTGCAGAATaGCTCAGGAGCTCCTTGAGC +
Preference number: 4 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLGRSAE*LRSSLS
Trigger: GCTCAAGGAGCTCCTGAGCCATTCTGCAGACCGACC...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp GATGTGTTAGGAAGGGAGGCGGCCAGGGAGAGCTCCAGAGCTAGCGTGATTCAGGCAGGTCTTGCAGCTTaGACTTGCCATCCTGAACCC +
Preference number: 4 (lower is better)
Translates to: DVLGREAARESSRASVIQAGLAA*TCHPEP
Trigger: GGGTTCAGGATGGCAAGTTCAAGCTGCAAGACCTGC...CTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGCCTCCCTTCCTAACACATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp CCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAATGTCGTCCTCAGTCATaGCCATTTTCATGGGCTGCT +
Preference number: 4 (lower is better)
Translates to: PWEETRGWPTKPEAKGQECRPQS*PFSWAA
Trigger: AGCAGCCCATGAAAATGGGCATGACTGAGGACGACA...TTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR GCA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGCACTCCTCCACTTTCTaGCTGAAGTCCTCTCGGCTG +
Preference number: 4 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLHSSTF*LKSSRL
Trigger: CAGCCGAGAGGACTTCAGGCAGAAAGTGGAGGAGTG...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GTTCCCAGAACTATGGAGAAGCCAGAGGTGGACTTCAGAGCTGGGGAGACTCCCTACTTCAGCACCCGTTaGATGGGCACCACCAGCAGG +
Preference number: 4 (lower is better)
Translates to: VPRTMEKPEVDFRAGETPYFSTR*MGTTSR
Trigger: CCTGCTGGTGGTGCCCATGCAACGGGTGCTGAAGTA...GGGAGTCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCATAGTTCTGGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTATGACCTGGGACATCTaGGGCCGGAAGTTGATGTCC +
Preference number: 4 (lower is better)
Translates to: RALPTVCTYTRQARLRSCMTWDI*GRKLMS
Trigger: GGACATCAACTTCCGGCCGCAGATGTCCCAGGTCAT...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTGGACAGACGGGACACTaGAGAGATGACCTGGGACAT +
Preference number: 4 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSGQTGH*RDDLGH
Trigger: ATGTCCCAGGTCATCTCTGCAGTGTCCCGTCTGTCC...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTGGGTGCGGTAGTACTTaGCCTCGGTCTCCTGAATCT +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGAGCGST*PRSPES
Trigger: AGATTCAGGAGACCGAGGCCAAGTACTACCGCACCC...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGGGGTGCGGTAGTACTTaGCCTCGGTCTCCTGAATCT +
Preference number: 4 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLGCGST*PRSPES
Trigger: AGATTCAGGAGACCGAGGCCAAGTACTACCGCACCC...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTGCCACCAGCCATCATaGACACATCGATGGCTCGCA +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGACHQPS*THRWLA
Trigger: TGCGAGCCATCGATGTGTCCATGATGGCTGGTGGCA...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp CTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGAATACCCTGACTTCCTaGTTTGAACCAGCCGCCCTT +
Preference number: 4 (lower is better)
Translates to: LGRKPGAGQPSQRPKARKNTLTS*FEPAAL
Trigger: AAGGGCGGCTGGTTCAAACCAGGAAGTCAGGGTATT...CTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTGCGTTCTGCCTCTGCTaGACGCTCTCTGATGAGGTA +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGAAFCLC*TLSDEV
Trigger: TACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGC...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCTTCAGCTGTCTCCTCTaGTGGAAATGGCCTGATCCC +
Preference number: 4 (lower is better)
Translates to: SPGSRAEKTCFLAQERGFFSCLL*WKWPDP
Trigger: GGGATCAGGCCATTTCCATCAGAGGAGACAGCTGAA...GAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTTCAGCTGTCTCCTCTaGTGGAAATGGCCTGATCCC +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGAFSCLL*WKWPDP
Trigger: GGGATCAGGCCATTTCCATCAGAGGAGACAGCTGAA...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTTGGCCTCGGTCTCCTaGATCTCTAACAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGALASVS*ISNKQQ
Trigger: CTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAA...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTGGCTCAGGAGCTCCTTaGGCAGCAGGTGGTACTTCA +
Preference number: 4 (lower is better)
Translates to: AQERGFNKQRAVPLTGWAGSGAP*AAGGTS
Trigger: TGAAGTACCACCTGCTGCTCAAGGAGCTCCTGAGCC...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp ACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGGTCCTCTTGCACACGATaGCCACCTTGTCAAATAGGA +
Preference number: 4 (lower is better)
Translates to: TPDSVPRSKVVHCPTPVGSSCTR*PPCQIG
Trigger: TCCTATTTGACAAGGTGGTCATCGTGTGCAAGAGGA...CCCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGATCTGGCTTGATGTTTaGCATGGCCATCTCGAACTG +
Preference number: 4 (lower is better)
Translates to: LGRKPGAGQPSQRPKARKIWLDV*HGHLEL
Trigger: CAGTTCGAGATGGCCATGTCAAACATCAAGCCAGAT...CTTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAAGGGCGGGCAGAGCCTGGCCTTATCTGGCTTaGTGTTTGACATGGCCATCT +
Preference number: 4 (lower is better)
Translates to: HRVLGGCSCGSHGRAGRAWPYLA*CLTWPS
Trigger: AGATGGCCATGTCAAACATCAAGCCAGATAAGGCCA...GGCTCTGCCCGCCCTTCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CAGATGGGCCTGGGAAGGAACCCCCTGCTGTCCCTAGCCCTCCCTAGCCACCATTACATCTGGAAGCTATaGTGGTTGGCATTGGCCTTA +
Preference number: 4 (lower is better)
Translates to: QMGLGRNPLLSLALPSHHYIWKL*WLALAL
Trigger: TAAGGCCAATGCCAACCATCATAGCTTCCAGATGTA...ATGGTGGCTAGGGAGGGCTAGGGACAGCAGGGGGTTCCTTCCCAGGCCCATCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGACCTGACTTCCTGGTTTaGACCAGCCGCCCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGPDFLV*TSRPSH
Trigger: GTGGGAAGGGCGGCTGGTTCAAACCAGGAAGTCAGG...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTCTTTGCTCTGTGCGATaGTGTGCAGGGACAGACGGG +
Preference number: 4 (lower is better)
Translates to: AQERGFNKQRAVPLTGWALCSVR*CAGTDG
Trigger: CCCGTCTGTCCCTGCACAGCATCGCACAGAGCAAAG...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTACCACCAGCAGGTCTTaGAGCTTGAACTTGCCATCC +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGATTSRS*SLNLPS
Trigger: GGATGGCAAGTTCAAGCTGCAAGACCTGCTGGTGGT...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTGCTGCCGTTCCATGTTaGCAGCAAACCACGGGTAGG +
Preference number: 4 (lower is better)
Translates to: AQERGFNKQRAVPLTGWAAAVPC*QQTTGR
Trigger: CCTACCCGTGGTTTGCTGGCAACATGGAACGGCAGC...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCGGCCACACGACGCGGTaGTTGGGCGGCAGGACCTTG +
Preference number: 4 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELGHTTR*LGGRTL
Trigger: CAAGGTCCTGCCGCCCAACCACCGCGTCGTGTGGCC...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTGGTCGGTCTGCAGAATaGCTCAGGAGCTCCTTGAGC +
Preference number: 4 (lower is better)
Translates to: AQERGFNKQRAVPLTGWAGRSAE*LRSSLS
Trigger: GCTCAAGGAGCTCCTGAGCCATTCTGCAGACCGACC...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGCTCCCCGTCAATCTTTaGCCTCCCAAATTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLLPVNL*PPKFLQ
Trigger: CTGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAG...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp ACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGGGCTTCACAGATGAGCTaGGAAAATACCCTGACTTCC +
Preference number: 4 (lower is better)
Translates to: TPDSVPRSKVVHCPTPVGASQMS*ENTLTS
Trigger: GGAAGTCAGGGTATTTTCCCAGCTCATCTGTGAAGC...CCCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp AACAAACAGACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTGGAGCAGAAGGGGCCTaGGGGGCAAAGCTGAGGCCC +
Preference number: 4 (lower is better)
Translates to: NKQTKTESTGCWEGVHVVGAEGA*GAKLRP
Trigger: GGGCCTCAGCTTTGCCCCCCAGGCCCCTTCTGCTCC...AACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTCTGTTTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CAA 72 bp TGGCTGTGGGACCCCCACATCCCTGACTTGCATGCATaGTGCTGCAAATGTTCACAGCTGATCTCAGGCCCC +
Preference number: 4 (lower is better)
Translates to: WLWDPHIPDLHA*CCKCSQLISGP
Trigger: GGGGCCTGAGATCAGCTGTGAACATTTGCAGCACAATGCATGCAAGTCAGGGATGTGGGGGTCCCACAGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp AACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGGTCTTGCAGAAGAACTaGAAGCCTTGCTTTCCTTGG +
Preference number: 4 (lower is better)
Translates to: NPGQCPQEQGSALSHSSGVLQKN*KPCFPW
Trigger: CCAAGGAAAGCAAGGCTTTCAGTTCTTCTGCAAGAC...CCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCATCTGGCTTGATGTTTaGCATGGCCATCTCGAACTG +
Preference number: 4 (lower is better)
Translates to: SLRTPWEETRGWPTKPEAIWLDV*HGHLEL
Trigger: CAGTTCGAGATGGCCATGTCAAACATCAAGCCAGAT...GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCTTTTCTGCATGTATCTaGTCATGGGCTGCTGCACCT +
Preference number: 4 (lower is better)
Translates to: SLRTPWEETRGWPTKPEAFSACI*SWAAAP
Trigger: AGGTGCAGCAGCCCATGATCAGATACATGCAGAAAA...GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTTATCTGATCATGGGCTaGTGCACCTCCACCTTGATG +
Preference number: 4 (lower is better)
Translates to: RALPTVCTYTRQARLRSCYLIMG*CTSTLM
Trigger: CATCAAGGTGGAGGTGCAGCAGCCCATGATCAGATA...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GTCGCTTCCGGCTGCTCCCCGTCTCATGATCCCTCCCTGCTTCCCCTAACATCCTGTCGTCCTCAGTCATaGCCATTTTCTGCATGTATC +
Preference number: 4 (lower is better)
Translates to: VASGCSPSHDPSLLPLTSCRPQS*PFSACI
Trigger: GATACATGCAGAAAATGGGCATGACTGAGGACGACA...GGATGTTAGGGGAAGCAGGGAGGGATCATGAGACGGGGAGCAGCCGGAAGCGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp CACCAGGAGAAGGAAGTGGAAGAGCAGAGACACCCAAGAGCACTTATTTTGAGCACACGACGCGGTGGTTaGGCGGCAGGACCTTGCAGT +
Preference number: 4 (lower is better)
Translates to: HQEKEVEEQRHPRALILSTRRGG*AAGPCS
Trigger: ACTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGT...GCTCAAAATAAGTGCTCTTGGGTGTCTCTGCTCTTCCACTTCCTTCTCCTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp ATGTTCACAGCTGATCTCAGGCCCCCAGTCCTTAGACGGTGTCCAGTCTCCTGCTCATGCCCATTTTCATaGGCTGCTGCACCTCCACCT +
Preference number: 4 (lower is better)
Translates to: MFTADLRPPVLRRCPVSCSCPFS*AAAPPP
Trigger: AGGTGGAGGTGCAGCAGCCCATGAAAATGGGCATGA...GCAGGAGACTGGACACCGTCTAAGGACTGGGGGCCTGAGATCAGCTGTGAACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR CCA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTTCCTTGAGCAGCAGGTaGTACTTCAGCACCCGTTGC +
Preference number: 4 (lower is better)
Translates to: AQERGFNKQRAVPLTGWASLSSR*YFSTRC
Trigger: GCAACGGGTGCTGAAGTACCACCTGCTGCTCAAGGA...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTAATACCCTGACTTCCTaGTTTGAACCAGCCGCCCTT +
Preference number: 4 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSNTLTS*FEPAAL
Trigger: AAGGGCGGCTGGTTCAAACCAGGAAGTCAGGGTATT...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp TCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCGCTTCACAGATGAGCTaGGAAAATACCCTGACTTCC +
Preference number: 4 (lower is better)
Translates to: SLRTPWEETRGWPTKPEAASQMS*ENTLTS
Trigger: GGAAGTCAGGGTATTTTCCCAGCTCATCTGTGAAGC...GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CAAATGTTCACAGCTGATCTCAGGCCCCCAGTCCTTAGACGGTGTCCAGTCTCCTTGAACTTGCCATCCTaGACCCTGAGTGTGCACTCC +
Preference number: 4 (lower is better)
Translates to: QMFTADLRPPVLRRCPVSLNLPS*TLSVHS
Trigger: GGAGTGCACACTCAGGGTTCAGGATGGCAAGTTCAA...GGAGACTGGACACCGTCTAAGGACTGGGGGCCTGAGATCAGCTGTGAACATTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTGTCTTGCAGAAGAACTaGAAGCCTTGCTTTCCTTGG +
Preference number: 4 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSVLQKN*KPCFPW
Trigger: CCAAGGAAAGCAAGGCTTTCAGTTCTTCTGCAAGAC...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCTGGCCTTATCTGGCTTaGTGTTTGACATGGCCATCT +
Preference number: 4 (lower is better)
Translates to: SPGSRAEKTCFLAQERGFWPYLA*CLTWPS
Trigger: AGATGGCCATGTCAAACATCAAGCCAGATAAGGCCA...GAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp GAGAAGGAAGTGGAAGAGCAGAGACACCCAAGAGCACTTATTTTGAGCTGGCCACCTGACTTCCTGGTTTaGACCAGCCGCCCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: EKEVEEQRHPRALILSWPPDFLV*TSRPSH
Trigger: GTGGGAAGGGCGGCTGGTTCAAACCAGGAAGTCAGG...TGGCCAGCTCAAAATAAGTGCTCTTGGGTGTCTCTGCTCTTCCACTTCCTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTCACTGGCATGAGACTTaGGCAGATTGTCCGTCTGCT +
Preference number: 4 (lower is better)
Translates to: AQERGFNKQRAVPLTGWAHWHET*ADCPSA
Trigger: AGCAGACGGACAATCTGCTCAAGTCTCATGCCAGTG...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTGACCACATCTTCCCATaGGACTTCTTGATGTCCTTG +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGADHIFP*DFLMSL
Trigger: CAAGGACATCAAGAAGTCTCATGGGAAGATGTGGTC...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GATGTGTTAGGAAGGGAGGCGGCCAGGGAGAGCTCCAGAGCTAGCGTGATTCAGATTTTCATGGGCTGCTaGACCTCCACCTTGATGATG +
Preference number: 4 (lower is better)
Translates to: DVLGREAARESSRASVIQIFMGC*TSTLMM
Trigger: CATCATCAAGGTGGAGGTGCAGCAGCCCATGAAAAT...CTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGCCTCCCTTCCTAACACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR GCA 90 bp CCTGGTGACCGTGGTTTGGAATGCAGAAGACCCAAGAGTGCCTTTCTGGAAAGACAATGTCCTCCAGGGTaGGGTAGTACTTGGCCTCGG +
Preference number: 4 (lower is better)
Translates to: PGDRGLECRRPKSAFLERQCPPG*GSTWPR
Trigger: CCGAGGCCAAGTACTACCGCACCCTGGAGGACATTG...TCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GTCGCTTCCGGCTGCTCCCCGTCTCATGATCCCTCCCTGCTTCCCCTAACATCCAGTGTAGTGTCCAACTaGTTGAAGCTTTCCTTGAGT +
Preference number: 4 (lower is better)
Translates to: VASGCSPSHDPSLLPLTSSVVSN*LKLSLS
Trigger: ACTCAAGGAAAGCTTCAAGCAGTTGGACACTACACT...GGATGTTAGGGGAAGCAGGGAGGGATCATGAGACGGGGAGCAGCCGGAAGCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGGCAGGTCTTGCAGCTTaGACTTGCCATCCTGAACCC +
Preference number: 4 (lower is better)
Translates to: QGREDLFLGSGKGLQQAKAGLAA*TCHPEP
Trigger: GGGTTCAGGATGGCAAGTTCAAGCTGCAAGACCTGC...CTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp TCCTCACTGGACGCCTTCCTCTTCCACGTACGTCGAAGGAAACCAACCGATCCGTCCTCTTGCACACGATaGCCACCTTGTCAAATAGGA +
Preference number: 4 (lower is better)
Translates to: SSLDAFLFHVRRRKPTDPSSCTR*PPCQIG
Trigger: TCCTATTTGACAAGGTGGTCATCGTGTGCAAGAGGA...CGGATCGGTTGGTTTCCTTCGACGTACGTGGAAGAGGAAGGCGTCCAGTGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GAGAAGGAAGTGGAAGAGCAGAGACACCCAAGAGCACTTATTTTGAGCTGGCCACTTTGCTCTGTGCGATaGTGTGCAGGGACAGACGGG +
Preference number: 4 (lower is better)
Translates to: EKEVEEQRHPRALILSWPLCSVR*CAGTDG
Trigger: CCCGTCTGTCCCTGCACAGCATCGCACAGAGCAAAG...TGGCCAGCTCAAAATAAGTGCTCTTGGGTGTCTCTGCTCTTCCACTTCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTAACAGGTACCTGTCTTaGTTGGTGTGGTTGACTATG +
Preference number: 4 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSNRYLS*LVWLTM
Trigger: CATAGTCAACCACACCAAGCAAGACAGGTACCTGTT...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GATGTGTTAGGAAGGGAGGCGGCCAGGGAGAGCTCCAGAGCTAGCGTGATTCAGAACAGGTACCTGTCTTaGTTGGTGTGGTTGACTATG +
Preference number: 4 (lower is better)
Translates to: DVLGREAARESSRASVIQNRYLS*LVWLTM
Trigger: CATAGTCAACCACACCAAGCAAGACAGGTACCTGTT...CTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGCCTCCCTTCCTAACACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GAGAAGGAAGTGGAAGAGCAGAGACACCCAAGAGCACTTATTTTGAGCTGGCCAGCTGCCGTTCCATGTTaGCAGCAAACCACGGGTAGG +
Preference number: 4 (lower is better)
Translates to: EKEVEEQRHPRALILSWPAAVPC*QQTTGR
Trigger: CCTACCCGTGGTTTGCTGGCAACATGGAACGGCAGC...TGGCCAGCTCAAAATAAGTGCTCTTGGGTGTCTCTGCTCTTCCACTTCCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGACTCCCCGTCAATCTTTaGCCTCCCAAATTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGLPVNL*PPKFLQ
Trigger: CTGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAG...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CCTGGTGACCGTGGTTTGGAATGCAGAAGACCCAAGAGTGCCTTTCTGGAAAGAGGAAGAGCAGCTCAATaGCCTCCTTCAGCTCATAGC +
Preference number: 4 (lower is better)
Translates to: PGDRGLECRRPKSAFLERGRAAQ*PPSAHS
Trigger: GCTATGAGCTGAAGGAGGTCATTGAGCTGCTCTTCC...TCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp CAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGTCTTTCTGGTCGGTCTaGAGAATGGCTCAGGAGCTC +
Preference number: 4 (lower is better)
Translates to: QGREDLFLGSGKGLQQAKSFWSV*RMAQEL
Trigger: GAGCTCCTGAGCCATTCTGCAGACCGACCAGAAAGA...CTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp CAAGACCTGACACATACTCTAGAGAGCAGCAGAAAAGACAGGCAGATCAGTGTGCAGGCATTCCTTGTGTaGCCCGACGCCACATCTGGT +
Preference number: 4 (lower is better)
Translates to: QDLTHTLESSRKDRQISVQAFLV*PDATSG
Trigger: ACCAGATGTGGCGTCGGGGCACACAAGGAATGCCTG...CACACTGATCTGCCTGTCTTTTCTGCTGCTCTCTAGAGTATGTGTCAGGTCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTAGTGTAGTGTCCAACTaGTTGAAGCTTTCCTTGAGT +
Preference number: 4 (lower is better)
Translates to: RALPTVCTYTRQARLRSCSVVSN*LKLSLS
Trigger: ACTCAAGGAAAGCTTCAAGCAGTTGGACACTACACT...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTAGTCCAAATTTGTCATaGCAGACTTTGAGGAAGGTG +
Preference number: 4 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGASPNLS*QTLRKV
Trigger: CACCTTCCTCAAAGTCTGCCATGACAAATTTGGACT...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR CCA 90 bp ACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGTGCCACCAGCCATCATaGACACATCGATGGCTCGCA +
Preference number: 4 (lower is better)
Translates to: TCFLAQERGFNKQRAVPLCHQPS*THRWLA
Trigger: TGCGAGCCATCGATGTGTCCATGATGGCTGGTGGCA...CAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp AACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGTTTTCTATGGAGCACTaGAACTCGCTAATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: NPGQCPQEQGSALSHSSGFSMEH*NSLIFF
Trigger: GAAGAAGATTAGCGAGTTCCAGTGCTCCATAGAAAA...CCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGACTGTCTTGCTTGGTGTaGTTGACTATGGACCGGACT +
Preference number: 4 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGLSCLV*LTMDRT
Trigger: AGTCCGGTCCATAGTCAACCACACCAAGCAAGACAG...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GAGAAGGAAGTGGAAGAGCAGAGACACCCAAGAGCACTTATTTTGAGCTGGCCAAACCATCTTGGGACCTaGTCCTGCTCCAGGAGCATC +
Preference number: 4 (lower is better)
Translates to: EKEVEEQRHPRALILSWPNHLGT*SCSRSI
Trigger: GATGCTCCTGGAGCAGGACCAGGTCCCAAGATGGTT...TGGCCAGCTCAAAATAAGTGCTCTTGGGTGTCTCTGCTCTTCCACTTCCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CCTGGTGACCGTGGTTTGGAATGCAGAAGACCCAAGAGTGCCTTTCTGGAAAGAGCTGGGAAAATACCCTaGCTTCCTGGTTTGAACCAG +
Preference number: 4 (lower is better)
Translates to: PGDRGLECRRPKSAFLERAGKIP*LPGLNQ
Trigger: CTGGTTCAAACCAGGAAGTCAGGGTATTTTCCCAGC...TCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAGAAGCTTTCCTTGAGTaGGTGACACTGGTAGTACTC +
Preference number: 4 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGEAFLE*VTLVVL
Trigger: GAGTACTACCAGTGTCACTCACTCAAGGAAAGCTTC...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp AGTAAGCTTTCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGTTGATGTCCTTGTTGTaGATCGGGTCATCGGTCATC +
Preference number: 4 (lower is better)
Translates to: SKLSLRTPWEETRGWPTKLMSLL*IGSSVI
Trigger: GATGACCGATGACCCGATGCACAACAAGGACATCAA...CTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGAAAGCTTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
3UTR CAA 72 bp CCCCTGCTGTCCCTAGCCCTCCCTAGCCACCATGAGTaGAGTTCTAGGTTTCTGAACAATCATCTAAACCAG +
Preference number: 4 (lower is better)
Translates to: PLLSLALPSHHE*SSRFLNNHLNQ
Trigger: CTGGTTTAGATGATTGTTCAGAAACCTAGAACTCAACTCATGGTGGCTAGGGAGGGCTAGGGACAGCAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp GACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGATGTCATGGCAGACTTTaGGGAAGGTGCGAATATTCT +
Preference number: 4 (lower is better)
Translates to: DQNGKHRVLGGCSCGSHGCHGRL*GRCEYS
Trigger: AGAATATTCGCACCTTCCTCAAAGTCTGCCATGACA...TCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR TCA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCTTGGCCTCGGTCTCCTaGATCTCTAACAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELLASVS*ISNKQQ
Trigger: CTGCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAA...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp AACAAACAGACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTGGAAGAGCAGCTCAATaGCCTCCTTCAGCTCATAGC +
Preference number: 4 (lower is better)
Translates to: NKQTKTESTGCWEGVHVVGRAAQ*PPSAHS
Trigger: GCTATGAGCTGAAGGAGGTCATTGAGCTGCTCTTCC...AACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTCTGTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp CACCAGGAGAAGGAAGTGGAAGAGCAGAGACACCCAAGAGCACTTATTTTGAGCGCTGGGAAAATACCCTaGCTTCCTGGTTTGAACCAG +
Preference number: 4 (lower is better)
Translates to: HQEKEVEEQRHPRALILSAGKIP*LPGLNQ
Trigger: CTGGTTCAAACCAGGAAGTCAGGGTATTTTCCCAGC...GCTCAAAATAAGTGCTCTTGGGTGTCTCTGCTCTTCCACTTCCTTCTCCTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCCCCATTTTCATGGGCTaGTGCACCTCCACCTTGATG +
Preference number: 4 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELPIFMG*CTSTLM
Trigger: CATCAAGGTGGAGGTGCAGCAGCCCATGAAAATGGG...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR GCA 90 bp AACAAACAGACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTTCTTTCTGGTCGGTCTaGAGAATGGCTCAGGAGCTC +
Preference number: 4 (lower is better)
Translates to: NKQTKTESTGCWEGVHVVSFWSV*RMAQEL
Trigger: GAGCTCCTGAGCCATTCTGCAGACCGACCAGAAAGA...AACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTCTGTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCCTGATCATGGGCTGCTaGACCTCCACCTTGATGATG +
Preference number: 4 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELLIMGC*TSTLMM
Trigger: CATCATCAAGGTGGAGGTGCAGCAGCCCATGATCAG...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCTTCAGACACAAGAACTaGGACATCTGCGGCCGGAAG +
Preference number: 4 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELFRHKN*DICGRK
Trigger: CTTCCGGCCGCAGATGTCCCAGTTCTTGTGTCTGAA...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR TCA 90 bp CACCAGGAGAAGGAAGTGGAAGAGCAGAGACACCCAAGAGCACTTATTTTGAGCGAAGCTTTCCTTGAGTaGGTGACACTGGTAGTACTC +
Preference number: 4 (lower is better)
Translates to: HQEKEVEEQRHPRALILSEAFLE*VTLVVL
Trigger: GAGTACTACCAGTGTCACTCACTCAAGGAAAGCTTC...GCTCAAAATAAGTGCTCTTGGGTGTCTCTGCTCTTCCACTTCCTTCTCCTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp ACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGTTGATGTCCTTGTTGTaGATCGGGTCATCGGTCATC +
Preference number: 4 (lower is better)
Translates to: TCFLAQERGFNKQRAVPLLMSLL*IGSSVI
Trigger: GATGACCGATGACCCGATGCACAACAAGGACATCAA...CAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCCTGTCTTGCTTGGTGTaGTTGACTATGGACCGGACT +
Preference number: 4 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELLSCLV*LTMDRT
Trigger: AGTCCGGTCCATAGTCAACCACACCAAGCAAGACAG...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR TCA 90 bp ACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGTACATCTGGAAGCTATaGTGGTTGGCATTGGCCTTA +
Preference number: 4 (lower is better)
Translates to: TCFLAQERGFNKQRAVPLYIWKL*WLALAL
Trigger: TAAGGCCAATGCCAACCATCATAGCTTCCAGATGTA...CAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp AGTAAGCTTTCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGTTTTCTATGGAGCACTaGAACTCGCTAATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: SKLSLRTPWEETRGWPTKFSMEH*NSLIFF
Trigger: GAAGAAGATTAGCGAGTTCCAGTGCTCCATAGAAAA...CTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGAAAGCTTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CCA 90 bp AACAAACAGACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTTCATCGGTCATCTTGTaGAAGAGCAGCTCAATGACC +
Preference number: 4 (lower is better)
Translates to: NKQTKTESTGCWEGVHVVSSVIL*KSSSMT
Trigger: GGTCATTGAGCTGCTCTTCCACAAGATGACCGATGA...AACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTCTGTTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR GCA 90 bp CAAGACCTGACACATACTCTAGAGAGCAGCAGAAAAGACAGGCAGATCAGTGTGGTCATGCCCATTTTCTaGATGTATCTGATCATGGGC +
Preference number: 4 (lower is better)
Translates to: QDLTHTLESSRKDRQISVVMPIF*MYLIMG
Trigger: GCCCATGATCAGATACATGCAGAAAATGGGCATGAC...CACACTGATCTGCCTGTCTTTTCTGCTGCTCTCTAGAGTATGTGTCAGGTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS CCA 90 bp GCCTGCGCCAGGTCGAAGACCACCGCCGAGGGCCACACGACGCGGTaGTTGGGCGGCAGGACCTTGCAGTCGATGAGCCAGCGGCCGCAT +
Preference number: 5 (lower is better)
Translates to: ACARSKTTAEGHTTR*LGGRTLQSMSQRPH
Trigger: ATGCGGCCGCTGGCTCATCGACTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGTGGCCCTCGGCGGTGGTCTTCGACCTGGCGCAGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAGATGGGCCTGGGAAGGAACCCCCTGCTGTCCCTAGCCCTCCCTAGCCACCATCACACGACGCGGTGGTaGGGCGGCAGGACCTTGCAG +
Preference number: 5 (lower is better)
Translates to: QMGLGRNPLLSLALPSHHHTTRW*GGRTLQ
Trigger: CTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGTG...ATGGTGGCTAGGGAGGGCTAGGGACAGCAGGGGGTTCCTTCCCAGGCCCATCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAATTGGGCGGCAGGACCTaGCAGTCGATGAGCCAGCGG +
Preference number: 5 (lower is better)
Translates to: PWEETRGWPTKPEAKGQELGGRT*QSMSQR
Trigger: CCGCTGGCTCATCGACTGCAAGGTCCTGCCGCCCAA...TTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 90 bp GTTGCCAGCAAACCACGGGTAGGCAGTGTAATCGATCTCCCGGGATaGTGGGCGGCCAGTAGGCGGCCTTCCATCCACTGGGCAGGGCTT +
Preference number: 5 (lower is better)
Translates to: VASKPRVGSVIDLPG*WAASRRPSIHWAGL
Trigger: AAGCCCTGCCCAGTGGATGGAAGGCCGCCTACTGGCCGCCCACCATCCCGGGAGATCGATTACACTGCCTACCCGTGGTTTGCTGGCAAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp ACTAGGCAGGCTAGGCTGAGGAGCTGTGCAAAGTGGCCTGTGCCCCAACTCTCTCACACGACGCGGTGGTaGGGCGGCAGGACCTTGCAG +
Preference number: 5 (lower is better)
Translates to: TRQARLRSCAKWPVPQLSHTTRW*GGRTLQ
Trigger: CTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGTG...AGAGAGTTGGGGCACAGGCCACTTTGCACAGCTCCTCAGCCTAGCCTGCCTAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAGATGGGCCTGGGAAGGAACCCCCTGCTGTCCCTAGCCCTCCCTAGCCACCATTCTCGAGCAGCAAAGTaGTACCTGGCCACGGCTGTG +
Preference number: 5 (lower is better)
Translates to: QMGLGRNPLLSLALPSHHSRAAK*YLATAV
Trigger: CACAGCCGTGGCCAGGTACAACTTTGCTGCTCGAGA...ATGGTGGCTAGGGAGGGCTAGGGACAGCAGGGGGTTCCTTCCCAGGCCCATCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAGGCAGATCAGTGTGGGGCAGCAGATGGGCCTGGGAAGGAACCCCCTGCTGTCAAGCAGCAGCTTCTCTaGTCGTCCTCAGTCATGCCC +
Preference number: 5 (lower is better)
Translates to: QADQCGAADGPGKEPPAVKQQLL*SSSVMP
Trigger: GGGCATGACTGAGGACGACAAGAGAAGCTGCTGCTT...GACAGCAGGGGGTTCCTTCCCAGGCCCATCTGCTGCCCCACACTGATCTGCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp TCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCACCTCCAGGCATTCCTaGTGTGCCCCGACGCCACAT +
Preference number: 5 (lower is better)
Translates to: SLRTPWEETRGWPTKPEATSRHS*CAPTPH
Trigger: ATGTGGCGTCGGGGCACACAAGGAATGCCTGGAGGT...GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp AACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGACCTCCAGGCATTCCTaGTGTGCCCCGACGCCACAT +
Preference number: 5 (lower is better)
Translates to: NPGQCPQEQGSALSHSSGTSRHS*CAPTPH
Trigger: ATGTGGCGTCGGGGCACACAAGGAATGCCTGGAGGT...CCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 90 bp ACACTGGTAGTACTCCACCAGCTCTCCAGCCAAGCCCAGCTAGGATaGCCAGTGCCTCAAAAACCTCTCCCTCAGGCGCAGGGCTCCCAA +
Preference number: 5 (lower is better)
Translates to: TLVVLHQLSSQAQLG*PVPQKPLPQAQGSQ
Trigger: TTGGGAGCCCTGCGCCTGAGGGAGAGGTTTTTGAGGCACTGGCCATCCTAGCTGGGCTTGGCTGGAGAGCTGGTGGAGTACTACCAGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTGTACTTCAGCACCCGTaGCATGGGCACCACCAGCAG +
Preference number: 5 (lower is better)
Translates to: RALPTVCTYTRQARLRSCVLQHP*HGHHQQ
Trigger: CTGCTGGTGGTGCCCATGCAACGGGTGCTGAAGTAC...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GTCGCTTCCGGCTGCTCCCCGTCTCATGATCCCTCCCTGCTTCCCCTAACATCCATCTGCGGCCGGAAGTaGATGTCCTTAAGGTCGATG +
Preference number: 5 (lower is better)
Translates to: VASGCSPSHDPSLLPLTSICGRK*MSLRSM
Trigger: CATCGACCTTAAGGACATCAACTTCCGGCCGCAGAT...GGATGTTAGGGGAAGCAGGGAGGGATCATGAGACGGGGAGCAGCCGGAAGCGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CTGCATGTGGACACTGGGCTGGAGGACACGAGGCCAACCCCGGACAGTGTCCCCTCTTGCTTGGTGTGGTaGACTATGGACCGGACTTTA +
Preference number: 5 (lower is better)
Translates to: LHVDTGLEDTRPTPDSVPSCLVW*TMDRTL
Trigger: TAAAGTCCGGTCCATAGTCAACCACACCAAGCAAGA...GGGGACACTGTCCGGGGTTGGCCTCGTGTCCTCCAGCCCAGTGTCCACATGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp ACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGGGGGTCATCGGTCATCTaGTGGAAGAGCAGCTCAATG +
Preference number: 5 (lower is better)
Translates to: TPDSVPRSKVVHCPTPVGGSSVI*WKSSSM
Trigger: CATTGAGCTGCTCTTCCACAAGATGACCGATGACCC...CCCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGT
59% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CTGCATGTGGACACTGGGCTGGAGGACACGAGGCCAACCCCGGACAGTGTCCCCTTGCAGGCTTTGCAGTaGGTAGTCTTGTCGAATGTG +
Preference number: 5 (lower is better)
Translates to: LHVDTGLEDTRPTPDSVPLQALQ*VVLSNV
Trigger: CACATTCGACAAGACTACCAACTGCAAAGCCTGCAA...GGGGACACTGTCCGGGGTTGGCCTCGTGTCCTCCAGCCCAGTGTCCACATGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GATGTGTTAGGAAGGGAGGCGGCCAGGGAGAGCTCCAGAGCTAGCGTGATTCAGTCTCGAGCAGCAAAGTaGTACCTGGCCACGGCTGTG +
Preference number: 5 (lower is better)
Translates to: DVLGREAARESSRASVIQSRAAK*YLATAV
Trigger: CACAGCCGTGGCCAGGTACAACTTTGCTGCTCGAGA...CTGAATCACGCTAGCTCTGGAGCTCTCCCTGGCCGCCTCCCTTCCTAACACATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 90 bp CTGGGCAGGGCTTCACAGATGAGCTGGGAAAATACCCTGACTTCCTaGTTTGAACCAGCCGCCCTTCCCACCAAGGAGAATCGGGGTCAC +
Preference number: 5 (lower is better)
Translates to: LGRASQMSWENTLTS*FEPAALPTKENRGH
Trigger: GTGACCCCGATTCTCCTTGGTGGGAAGGGCGGCTGGTTCAAACCAGGAAGTCAGGGTATTTTCCCAGCTCATCTGTGAAGCCCTGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTCACCACCAGCAGGTCTaGCAGCTTGAACTTGCCATC +
Preference number: 5 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGAHHQQV*QLELAI
Trigger: GATGGCAAGTTCAAGCTGCAAGACCTGCTGGTGGTG...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GATCCCTCCCTGCTTCCCCTAACATCCAGCATGCTGCATGTGGACACTGGGCTGCACCACCAGCAGGTCTaGCAGCTTGAACTTGCCATC +
Preference number: 5 (lower is better)
Translates to: DPSLLPLTSSMLHVDTGLHHQQV*QLELAI
Trigger: GATGGCAAGTTCAAGCTGCAAGACCTGCTGGTGGTG...CAGCCCAGTGTCCACATGCAGCATGCTGGATGTTAGGGGAAGCAGGGAGGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CTGCATGTGGACACTGGGCTGGAGGACACGAGGCCAACCCCGGACAGTGTCCCCTTGCAGTTGGTAGTCTaGTCGAATGTGTACATCTGG +
Preference number: 5 (lower is better)
Translates to: LHVDTGLEDTRPTPDSVPLQLVV*SNVYIW
Trigger: CCAGATGTACACATTCGACAAGACTACCAACTGCAA...GGGGACACTGTCCGGGGTTGGCCTCGTGTCCTCCAGCCCAGTGTCCACATGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 90 bp CAGGAGGGGCTGGGTTACCATGGTAATTCTGCACAGCAACCATCTTaGGACCTGGTCCTGCTCCAGGAGCATCCACATCTGCAGGTGAAC +
Preference number: 5 (lower is better)
Translates to: QEGLGYHGNSAQQPS*DLVLLQEHPHLQVN
Trigger: GTTCACCTGCAGATGTGGATGCTCCTGGAGCAGGACCAGGTCCCAAGATGGTTGCTGTGCAGAATTACCATGGTAACCCAGCCCCTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GTTCCCAGAACTATGGAGAAGCCAGAGGTGGACTTCAGAGCTGGGGAGACTCCCAATGGCCTGATCCCTTaGCTCTGTGCGATGCTGTGC +
Preference number: 5 (lower is better)
Translates to: VPRTMEKPEVDFRAGETPNGLIP*LCAMLC
Trigger: GCACAGCATCGCACAGAGCAAAGGGATCAGGCCATT...GGGAGTCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCATAGTTCTGGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAAGGGCGGGCAGAGCCTTCCTCCAGCTTCACTaGCAGGTTTTCTATGGAGCA +
Preference number: 5 (lower is better)
Translates to: HRVLGGCSCGSHGRAGRAFLQLH*QVFYGA
Trigger: TGCTCCATAGAAAACCTGCAAGTGAAGCTGGAGGAA...GGCTCTGCCCGCCCTTCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAAGAACAGGTACCTGTCTaGCTTGGTGTGGTTGACTAT +
Preference number: 5 (lower is better)
Translates to: PWEETRGWPTKPEAKGQEEQVPV*LGVVDY
Trigger: ATAGTCAACCACACCAAGCAAGACAGGTACCTGTTC...TTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAAAGGCCAGGAACACACGATGACCACCTaGTCAAATAGGAACAGGTAC +
Preference number: 5 (lower is better)
Translates to: PWEETRGWPTKPEAKGQEHTMTT*SNRNRY
Trigger: GTACCTGTTCCTATTTGACAAGGTGGTCATCGTGTG...TTCCTGGCCTTTGGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTGGGTCATCGGTCATCTaGTGGAAGAGCAGCTCAATG +
Preference number: 5 (lower is better)
Translates to: RALPTVCTYTRQARLRSCGSSVI*WKSSSM
Trigger: CATTGAGCTGCTCTTCCACAAGATGACCGATGACCC...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCAACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGCCCCTGAGAAACATCTaGCAGGCTTTGCAGTTGGTA +
Preference number: 5 (lower is better)
Translates to: PTPDSVPRSKVVHCPTPVPLRNI*QALQLV
Trigger: TACCAACTGCAAAGCCTGCAAGATGTTTCTCAGGGG...CACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAAATGTTCACAGCTGATCTCAGGCCCCCAGTCCTTAGACGGTGTCCAGTCTCCTGCACAGCAACCATCTaGGGACCTGGTCCTGCTCCA +
Preference number: 5 (lower is better)
Translates to: QMFTADLRPPVLRRCPVSCTATI*GPGPAP
Trigger: TGGAGCAGGACCAGGTCCCAAGATGGTTGCTGTGCA...GGAGACTGGACACCGTCTAAGGACTGGGGGCCTGAGATCAGCTGTGAACATTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp ACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGGACCTCATCATTGAACTaGATGCTGATGGCGAAGCGT +
Preference number: 5 (lower is better)
Translates to: TPDSVPRSKVVHCPTPVGTSSLN*MLMAKR
Trigger: ACGCTTCGCCATCAGCATCAAGTTCAATGATGAGGT...CCCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 90 bp TGCTCTGTGCGATGCTGTGCAGGGACAGACGGGACACTGCAGAGATaGCCTTCCCGAAGTCTCGGACATCAAAGAGGTCGAAAGGGTCAA +
Preference number: 5 (lower is better)
Translates to: CSVRCCAGTDGTLQR*PSRSLGHQRGRKGQ
Trigger: TTGACCCTTTCGACCTCTTTGATGTCCGAGACTTCGGGAAGGTCATCTCTGCAGTGTCCCGTCTGTCCCTGCACAGCATCGCACAGAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS TCA 90 bp CTGCCACCAGCCATCATGGACACATCGATGGCTCGCAGAAAGCTGTaGTGCACCTTGATGAGGTCCTCCAGGTTGATGAAGACAGCAGCC +
Preference number: 5 (lower is better)
Translates to: LPPAIMDTSMARRKL*CTLMRSSRLMKTAA
Trigger: GGCTGCTGTCTTCATCAACCTGGAGGACCTCATCAAGGTGCATCACAGCTTTCTGCGAGCCATCGATGTGTCCATGATGGCTGGTGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 90 bp TGCATGGGCACCACCAGCAGGTCTTGCAGCTTGAACTTGCCATCCTaGACCCTGAGTGTGCACTCCTCCACTTTCTGCCTGAAGTCCTCT +
Preference number: 5 (lower is better)
Translates to: CMGTTSRSCSLNLPS*TLSVHSSTFCLKSS
Trigger: AGAGGACTTCAGGCAGAAAGTGGAGGAGTGCACACTCAGGGTTCAGGATGGCAAGTTCAAGCTGCAAGACCTGCTGGTGGTGCCCATGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 90 bp CCCACCAATTCGGCTGTAGATCTTCACCACATCACCTTCTCGCAGTaGCAGCTCCCGCATGTCTCGAGCAGCAAAGTTGTACCTGGCCAC +
Preference number: 5 (lower is better)
Translates to: PTNSAVDLHHITFSQ*QLPHVSSSKVVPGH
Trigger: GTGGCCAGGTACAACTTTGCTGCTCGAGACATGCGGGAGCTGTCACTGCGAGAAGGTGATGTGGTGAAGATCTACAGCCGAATTGGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS GCA 90 bp TCCTCTGATGGAAATGGCCTGATCCCTTTGCTCTGTGCGATGCTGTaGAGGGACAGACGGGACACTGCAGAGATGACCTTCCCGAAGTCT +
Preference number: 5 (lower is better)
Translates to: SSDGNGLIPLLCAML*RDRRDTAEMTFPKS
Trigger: AGACTTCGGGAAGGTCATCTCTGCAGTGTCCCGTCTGTCCCTGCACAGCATCGCACAGAGCAAAGGGATCAGGCCATTTCCATCAGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS GCA 90 bp CCAGCCGCAAGGGACCCATGTAGTTCTTCTCAATGTCCTCCAGGGTaGGGTAGTACTTGGCCTCGGTCTCCTGAATCTCTAACAAGCAGC +
Preference number: 5 (lower is better)
Translates to: PAARDPCSSSQCPPG*GSTWPRSPESLTSS
Trigger: GCTGCTTGTTAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAGAACTACATGGGTCCCTTGCGGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GAGAAAGGGCAGCAAGGGTGTGTGTGTCTTCAAGTAAGCTTTCACTCAGAACTCTTGGGCGGCAGGACCTaGCAGTCGATGAGCCAGCGG +
Preference number: 5 (lower is better)
Translates to: EKGQQGCVCLQVSFHSELLGGRT*QSMSQR
Trigger: CCGCTGGCTCATCGACTGCAAGGTCCTGCCGCCCAA...GAGTTCTGAGTGAAAGCTTACTTGAAGACACACACACCCTTGCTGCCCTTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAAGGGCGGGCAGAGCCTTGTCATGGCAGACTTaGAGGAAGGTGCGAATATTC +
Preference number: 5 (lower is better)
Translates to: HRVLGGCSCGSHGRAGRALSWQT*RKVRIF
Trigger: GAATATTCGCACCTTCCTCAAAGTCTGCCATGACAA...GGCTCTGCCCGCCCTTCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR CAA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTAATGGCCTGATCCCTTaGCTCTGTGCGATGCTGTGC +
Preference number: 5 (lower is better)
Translates to: AQERGFNKQRAVPLTGWANGLIP*LCAMLC
Trigger: GCACAGCATCGCACAGAGCAAAGGGATCAGGCCATT...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTGCTCCCCGTCAATCTTaGGCCTCCCAAATTCCTCCA +
Preference number: 5 (lower is better)
Translates to: AQERGFNKQRAVPLTGWAAPRQS*ASQIPP
Trigger: TGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAGC...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp AACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGGGTCTTGCTTGGTGTGGTaGACTATGGACCGGACTTTA +
Preference number: 5 (lower is better)
Translates to: NPGQCPQEQGSALSHSSGSCLVW*TMDRTL
Trigger: TAAAGTCCGGTCCATAGTCAACCACACCAAGCAAGA...CCCACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp TGTCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTAGGTACCTGTCTTGCTaGGTGTGGTTGACTATGGAC +
Preference number: 5 (lower is better)
Translates to: CPLAAGQRRPVSWLRKGARYLSC*VWLTMD
Trigger: GTCCATAGTCAACCACACCAAGCAAGACAGGTACCT...AGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CACAGGGTGTTGGGAGGGTGTTCATGTGGTTCACACGGAAGGGCGGGCAGAGCCGAAGAACTGAAAGCCTaGCTTTCCTTGGAGGTGAAT +
Preference number: 5 (lower is better)
Translates to: HRVLGGCSCGSHGRAGRAEELKA*LSLEVN
Trigger: ATTCACCTCCAAGGAAAGCAAGGCTTTCAGTTCTTC...GGCTCTGCCCGCCCTTCCGTGTGAACCACATGAACACCCTCCCAACACCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp TCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCAACATCTTGCAGGCTTaGCAGTTGGTAGTCTTGTCG +
Preference number: 5 (lower is better)
Translates to: SLRTPWEETRGWPTKPEANILQA*QLVVLS
Trigger: CGACAAGACTACCAACTGCAAAGCCTGCAAGATGTT...GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp TCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCCCCCTGAGAAACATCTaGCAGGCTTTGCAGTTGGTA +
Preference number: 5 (lower is better)
Translates to: SPGSRAEKTCFLAQERGFPLRNI*QALQLV
Trigger: TACCAACTGCAAAGCCTGCAAGATGTTTCTCAGGGG...GAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCAACCCCGGACAGTGTCCCCAGGAGCAAGGTAGTGCATTGTCCCACTCCAGTGACCTCATCATTGAACTaGATGCTGATGGCGAAGCGT +
Preference number: 5 (lower is better)
Translates to: PTPDSVPRSKVVHCPTPVTSSLN*MLMAKR
Trigger: ACGCTTCGCCATCAGCATCAAGTTCAATGATGAGGT...CACTGGAGTGGGACAATGCACTACCTTGCTCCTGGGGACACTGTCCGGGGTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp TCCCCTGGCAGCAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCGAACAGGTACCTGTCTaGCTTGGTGTGGTTGACTAT +
Preference number: 5 (lower is better)
Translates to: SPGSRAEKTCFLAQERGFEQVPV*LGVVDY
Trigger: ATAGTCAACCACACCAAGCAAGACAGGTACCTGTTC...GAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTGCTGCCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp AGAGCCCTCCCCACAGTCTGCACTTACACTAGGCAGGCTAGGCTGAGGAGCTGTAACATCTTGCAGGCTTaGCAGTTGGTAGTCTTGTCG +
Preference number: 5 (lower is better)
Translates to: RALPTVCTYTRQARLRSCNILQA*QLVVLS
Trigger: CGACAAGACTACCAACTGCAAAGCCTGCAAGATGTT...ACAGCTCCTCAGCCTAGCCTGCCTAGTGTAAGTGCAGACTGTGGGGAGGGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGTGCACAGCAACCATCTaGGGACCTGGTCCTGCTCCA +
Preference number: 5 (lower is better)
Translates to: QGREDLFLGSGKGLQQAKCTATI*GPGPAP
Trigger: TGGAGCAGGACCAGGTCCCAAGATGGTTGCTGTGCA...CTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS GCA 90 bp CACCTCATCATTGAACTTGATGCTGATGGCGAAGCGTTCTGCCTCTaGTGGACGCTCTCTGATGAGGTAGGTCCCACTGGCATGAGACTT +
Preference number: 5 (lower is better)
Translates to: HLIIELDADGEAFCL*WTLSDEVGPTGMRL
Trigger: AAGTCTCATGCCAGTGGGACCTACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAATGATGAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 90 bp CTCATCATTGAACTTGATGCTGATGGCGAAGCGTTCTGCCTCTGCTaGACGCTCTCTGATGAGGTAGGTCCCACTGGCATGAGACTTGAG +
Preference number: 5 (lower is better)
Translates to: LIIELDADGEAFCLC*TLSDEVGPTGMRLE
Trigger: CTCAAGTCTCATGCCAGTGGGACCTACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAATGATGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGAAGCAGCAGCTTCTCTaGTCGTCCTCAGTCATGCCC +
Preference number: 5 (lower is better)
Translates to: QGREDLFLGSGKGLQQAKKQQLL*SSSVMP
Trigger: GGGCATGACTGAGGACGACAAGAGAAGCTGCTGCTT...CTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAAGACCTGACACATACTCTAGAGAGCAGCAGAAAAGACAGGCAGATCAGTGTGGTACTTCAGCACCCGTaGCATGGGCACCACCAGCAG +
Preference number: 5 (lower is better)
Translates to: QDLTHTLESSRKDRQISVVLQHP*HGHHQQ
Trigger: CTGCTGGTGGTGCCCATGCAACGGGTGCTGAAGTAC...CACACTGATCTGCCTGTCTTTTCTGCTGCTCTCTAGAGTATGTGTCAGGTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCTGGTGACCGTGGTTTGGAATGCAGAAGACCCAAGAGTGCCTTTCTGGAAAGAGCTCCCCGTCAATCTTaGGCCTCCCAAATTCCTCCA +
Preference number: 5 (lower is better)
Translates to: PGDRGLECRRPKSAFLERAPRQS*ASQIPP
Trigger: TGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAGC...TCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp ATGTTCACAGCTGATCTCAGGCCCCCAGTCCTTAGACGGTGTCCAGTCTCCTGCTTGGCCTTATCTGGCTaGATGTTTGACATGGCCATC +
Preference number: 5 (lower is better)
Translates to: MFTADLRPPVLRRCPVSCLALSG*MFDMAI
Trigger: GATGGCCATGTCAAACATCAAGCCAGATAAGGCCAA...GCAGGAGACTGGACACCGTCTAAGGACTGGGGGCCTGAGATCAGCTGTGAACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp TCACTCAGAACTCCTTGGGAGGAAACCAGGGGCTGGCCAACCAAGCCAGAGGCCTCTTTCTCCACCACCTaGATATGTTTCACCTCATCA +
Preference number: 5 (lower is better)
Translates to: SLRTPWEETRGWPTKPEASFSTT*ICFTSS
Trigger: TGATGAGGTGAAACATATCAAGGTGGTGGAGAAAGA...GGCCTCTGGCTTGGTTGGCCAGCCCCTGGTTTCCTCCCAAGGAGTTCTGAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GAATGTGGCCAGCACAGATTTCCTCTATGTACAAGGACTGTACCCAGGGACAGGAACCGATCCGCCCATTaGTCTCTCCTTTCCACCAGC +
Preference number: 5 (lower is better)
Translates to: ECGQHRFPLCTRTVPRDRNRSAH*SLLSTS
Trigger: GCTGGTGGAAAGGAGAGACAAATGGGCGGATCGGTT...CCTGTCCCTGGGTACAGTCCTTGTACATAGAGGAAATCTGTGCTGGCCACATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS TCA 90 bp TGTTGTGCATCGGGTCATCGGTCATCTTGTGGAAGAGCAGCTCAATaGCCTCCTTCAGCTCATAGCTGTAGCCCTTCCTCTTGCACACGA +
Preference number: 5 (lower is better)
Translates to: CCASGHRSSCGRAAQ*PPSAHSCSPSSCTR
Trigger: TCGTGTGCAAGAGGAAGGGCTACAGCTATGAGCTGAAGGAGGTCATTGAGCTGCTCTTCCACAAGATGACCGATGACCCGATGCACAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS GCA 90 bp ATGTTTCACCTCATCATTGAACTTGATGCTGATGGCGAAGCGTTCTaGCTCTGCTGGACGCTCTCTGATGAGGTAGGTCCCACTGGCATG +
Preference number: 5 (lower is better)
Translates to: MFHLIIELDADGEAF*LCWTLSDEVGPTGM
Trigger: CATGCCAGTGGGACCTACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAATGATGAGGTGAAACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GTTCCCAGAACTATGGAGAAGCCAGAGGTGGACTTCAGAGCTGGGGAGACTCCCTTGCAGTTGGTAGTCTaGTCGAATGTGTACATCTGG +
Preference number: 5 (lower is better)
Translates to: VPRTMEKPEVDFRAGETPLQLVV*SNVYIW
Trigger: CCAGATGTACACATTCGACAAGACTACCAACTGCAA...GGGAGTCTCCCCAGCTCTGAAGTCCACCTCTGGCTTCTCCATAGTTCTGGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GCTCAGGAAAGGGGCTTCAACAAGCAAAGAGCAGTACCACTGACTGGGTGGGCTGAAGAACTGAAAGCCTaGCTTTCCTTGGAGGTGAAT +
Preference number: 5 (lower is better)
Translates to: AQERGFNKQRAVPLTGWAEELKA*LSLEVN
Trigger: ATTCACCTCCAAGGAAAGCAAGGCTTTCAGTTCTTC...AGCCCACCCAGTCAGTGGTACTGCTCTTTGCTTGTTGAAGCCCCTTTCCTGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 90 bp GGTGTGGTTGACTATGGACCGGACTTTAAGCTCCCCGTCAATCTTTaGCCTCCCAAATTCCTCCAGCTTCACTTGCAGGTTTTCTATGGA +
Preference number: 5 (lower is better)
Translates to: GVVDYGPDFKLPVNL*PPKFLQLHLQVFYG
Trigger: TCCATAGAAAACCTGCAAGTGAAGCTGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAGCTTAAAGTCCGGTCCATAGTCAACCACACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAGGGCAGAGAAGACCTGTTTCTTGGCTCAGGAAAGGGGCTTCAACAAGCAAAGTTCCTCCAGCTTCACTaGCAGGTTTTCTATGGAGCA +
Preference number: 5 (lower is better)
Translates to: QGREDLFLGSGKGLQQAKFLQLH*QVFYGA
Trigger: TGCTCCATAGAAAACCTGCAAGTGAAGCTGGAGGAA...CTTTGCTTGTTGAAGCCCCTTTCCTGAGCCAAGAAACAGGTCTTCTCTGCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCTGGTGACCGTGGTTTGGAATGCAGAAGACCCAAGAGTGCCTTTCTGGAAAGACACACGATGACCACCTaGTCAAATAGGAACAGGTAC +
Preference number: 5 (lower is better)
Translates to: PGDRGLECRRPKSAFLERHTMTT*SNRNRY
Trigger: GTACCTGTTCCTATTTGACAAGGTGGTCATCGTGTG...TCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCTGGTGACCGTGGTTTGGAATGCAGAAGACCCAAGAGTGCCTTTCTGGAAAGATTGGCCTTATCTGGCTaGATGTTTGACATGGCCATC +
Preference number: 5 (lower is better)
Translates to: PGDRGLECRRPKSAFLERLALSG*MFDMAI
Trigger: GATGGCCATGTCAAACATCAAGCCAGATAAGGCCAA...TCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCTGGTGACCGTGGTTTGGAATGCAGAAGACCCAAGAGTGCCTTTCTGGAAAGACAGGGCTCCCAAATATaGCTGAAAGAATGCTCAGGA +
Preference number: 5 (lower is better)
Translates to: PGDRGLECRRPKSAFLERQGSQI*LKECSG
Trigger: TCCTGAGCATTCTTTCAGCAATATTTGGGAGCCCTG...TCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS GCA 90 bp AGCTCCCCGTCAATCTTTGGCCTCCCAAATTCCTCCAGCTTCACTTaGAGGTTTTCTATGGAGCACTGGAACTCGCTAATCTTCTTCAAG +
Preference number: 5 (lower is better)
Translates to: SSPSIFGLPNSSSFT*RFSMEHWNSLIFFK
Trigger: CTTGAAGAAGATTAGCGAGTTCCAGTGCTCCATAGAAAACCTGCAAGTGAAGCTGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 90 bp TCCACCAGCTCCAGGAGGCTCTCAAACTTCTTAGCTTCCGTGATGTaGATCCAGCTATCTTTCTCCACCACCTTGATATGTTTCACCTCA +
Preference number: 5 (lower is better)
Translates to: STSSRRLSNFLASVM*IQLSFSTTLICFTS
Trigger: TGAGGTGAAACATATCAAGGTGGTGGAGAAAGATAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTGGAGCTGGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS-3UTR CAA 90 bp AACAAACAGACCAAAACGGAAAGCACAGGGTGTTGGGAGGGTGTTCATGTGGTTAGGTACCTGTCTTGCTaGGTGTGGTTGACTATGGAC +
Preference number: 5 (lower is better)
Translates to: NKQTKTESTGCWEGVHVVRYLSC*VWLTMD
Trigger: GTCCATAGTCAACCACACCAAGCAAGACAGGTACCT...AACCACATGAACACCCTCCCAACACCCTGTGCTTTCCGTTTTGGTCTGTTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CAAGACCTGACACATACTCTAGAGAGCAGCAGAAAAGACAGGCAGATCAGTGTGTTGCAGGCTTTGCAGTaGGTAGTCTTGTCGAATGTG +
Preference number: 5 (lower is better)
Translates to: QDLTHTLESSRKDRQISVLQALQ*VVLSNV
Trigger: CACATTCGACAAGACTACCAACTGCAAAGCCTGCAA...CACACTGATCTGCCTGTCTTTTCTGCTGCTCTCTAGAGTATGTGTCAGGTCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp CCTGGTGACCGTGGTTTGGAATGCAGAAGACCCAAGAGTGCCTTTCTGGAAAGATCTTTCTCCACCACCTaGATATGTTTCACCTCATCA +
Preference number: 5 (lower is better)
Translates to: PGDRGLECRRPKSAFLERSFSTT*ICFTSS
Trigger: TGATGAGGTGAAACATATCAAGGTGGTGGAGAAAGA...TCTTTCCAGAAAGGCACTCTTGGGTCTTCTGCATTCCAAACCACGGTCACCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS-3UTR CAA 90 bp GAATGTGGCCAGCACAGATTTCCTCTATGTACAAGGACTGTACCCAGGGACAGGTTTCTTAGTCCAAATTaGTCATGGCAGACTTTGAGG +
Preference number: 5 (lower is better)
Translates to: ECGQHRFPLCTRTVPRDRFLSPN*SWQTLR
Trigger: CCTCAAAGTCTGCCATGACAAATTTGGACTAAGAAA...CCTGTCCCTGGGTACAGTCCTTGTACATAGAGGAAATCTGTGCTGGCCACATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS CCA 90 bp GAAAGAATGCTCAGGAGGCTCTCAAACTTCTTAGCTTCCGTGATGTaGATCCAGCTATCTTTCTCCACCACCTTGATATGTTTCACCTCA +
Preference number: 5 (lower is better)
Translates to: ERMLRRLSNFLASVM*IQLSFSTTLICFTS
Trigger: TGAGGTGAAACATATCAAGGTGGTGGAGAAAGATAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTGAGCATTCTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS TCA 90 bp CAAACAGCTCACTGTTTCTTAGTCCAAATTTGTCATGGCAGACTTTaGGGAAGGTGCGAATATTCTTCAGACACAAGAACTGGGACATCT +
Preference number: 5 (lower is better)
Translates to: QTAHCFLVQICHGRL*GRCEYSSDTRTGTS
Trigger: AGATGTCCCAGTTCTTGTGTCTGAAGAATATTCGCACCTTCCTCAAAGTCTGCCATGACAAATTTGGACTAAGAAACAGTGAGCTGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS CCA 90 bp TCGAAAGGGTCAAACAGCTCACTGTTTCTTAGTCCAAATTTGTCATaGCAGACTTTGAGGAAGGTGCGAATATTCTTCAGACACAAGAAC +
Preference number: 5 (lower is better)
Translates to: SKGSNSSLFLSPNLS*QTLRKVRIFFRHKN
Trigger: GTTCTTGTGTCTGAAGAATATTCGCACCTTCCTCAAAGTCTGCCATGACAAATTTGGACTAAGAAACAGTGAGCTGTTTGACCCTTTCGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS CAA 72 bp GAGGGCCACACGACGCGGTGGTTGGGCGGCAGGACCTaGCAGTCGATGAGCCAGCGGCCGCATTGCCGCCAC +
Preference number: 6 (lower is better)
Translates to: EGHTTRWLGGRT*QSMSQRPHCRH
Trigger: GTGGCGGCAATGCGGCCGCTGGCTCATCGACTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGTGGCCCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 90 bp TGCGCCAGGTCGAAGACCACCGCCGAGGGCCACACGACGCGGTGGTaGGGCGGCAGGACCTTGCAGTCGATGAGCCAGCGGCCGCATTGC +
Preference number: 6 (lower is better)
Translates to: CARSKTTAEGHTTRW*GGRTLQSMSQRPHC
Trigger: GCAATGCGGCCGCTGGCTCATCGACTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGTGGCCCTCGGCGGTGGTCTTCGACCTGGCGCA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 72 bp TCGAAGACCACCGCCGAGGGCCACACGACGCGGTGGTaGGGCGGCAGGACCTTGCAGTCGATGAGCCAGCGG +
Preference number: 6 (lower is better)
Translates to: SKTTAEGHTTRW*GGRTLQSMSQR
Trigger: CCGCTGGCTCATCGACTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGTGGCCCTCGGCGGTGGTCTTCGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 72 bp AGGTCGAAGACCACCGCCGAGGGCCACACGACGCGGTaGTTGGGCGGCAGGACCTTGCAGTCGATGAGCCAG +
Preference number: 6 (lower is better)
Translates to: RSKTTAEGHTTR*LGGRTLQSMSQ
Trigger: CTGGCTCATCGACTGCAAGGTCCTGCCGCCCAACCACCGCGTCGTGTGGCCCTCGGCGGTGGTCTTCGACCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 72 bp CCACGGGTAGGCAGTGTAATCGATCTCCCGGGATGGTaGGCGGCCAGTAGGCGGCCTTCCATCCACTGGGCA +
Preference number: 6 (lower is better)
Translates to: PRVGSVIDLPGW*AASRRPSIHWA
Trigger: TGCCCAGTGGATGGAAGGCCGCCTACTGGCCGCCCACCATCCCGGGAGATCGATTACACTGCCTACCCGTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 72 bp CGCAGTGACAGCTCCCGCATGTCTCGAGCAGCAAAGTaGTACCTGGCCACGGCTGTGCCGATGACCCGCGGT +
Preference number: 6 (lower is better)
Translates to: RSDSSRMSRAAK*YLATAVPMTRG
Trigger: ACCGCGGGTCATCGGCACAGCCGTGGCCAGGTACAACTTTGCTGCTCGAGACATGCGGGAGCTGTCACTGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 72 bp GGGTCACCCCGGAGCAGTTCTATCACGTCTCCTGTCTaGAAGGTCAACACAGGCTTCCCAGGAGGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: GSPRSSSITSPV*KVNTGFPGGAG
Trigger: CCCAGCCCCTCCTGGGAAGCCTGTGTTGACCTTCCAGACAGGAGACGTGATAGAACTGCTCCGGGGTGACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 72 bp AAACCACGGGTAGGCAGTGTAATCGATCTCCCGGGATaGTGGGCGGCCAGTAGGCGGCCTTCCATCCACTGG +
Preference number: 6 (lower is better)
Translates to: KPRVGSVIDLPG*WAASRRPSIHW
Trigger: CCAGTGGATGGAAGGCCGCCTACTGGCCGCCCACCATCCCGGGAGATCGATTACACTGCCTACCCGTGGTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 90 bp TCACCTTCTCGCAGTGACAGCTCCCGCATGTCTCGAGCAGCAAAGTaGTACCTGGCCACGGCTGTGCCGATGACCCGCGGTGTGAACACT +
Preference number: 6 (lower is better)
Translates to: SPSRSDSSRMSRAAK*YLATAVPMTRGVNT
Trigger: AGTGTTCACACCGCGGGTCATCGGCACAGCCGTGGCCAGGTACAACTTTGCTGCTCGAGACATGCGGGAGCTGTCACTGCGAGAAGGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 72 bp AAAAGTTGTAGGAAGCGCAGGAAGCTGGAGACCGGCTaGAGGCCCTGCTGGTGGTTCGCTCCCGAGACTTGT +
Preference number: 6 (lower is better)
Translates to: KSCRKRRKLETG*RPCWWFAPETC
Trigger: ACAAGTCTCGGGAGCGAACCACCAGCAGGGCCTCAAGCCGGTCTCCAGCTTCCTGCGCTTCCTACAACTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 72 bp CGATGCTGTGCAGGGACAGACGGGACACTGCAGAGATaGCCTTCCCGAAGTCTCGGACATCAAAGAGGTCGA +
Preference number: 6 (lower is better)
Translates to: RCCAGTDGTLQR*PSRSLGHQRGR
Trigger: TCGACCTCTTTGATGTCCGAGACTTCGGGAAGGTCATCTCTGCAGTGTCCCGTCTGTCCCTGCACAGCATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS GCA 72 bp GGAAATGGCCTGATCCCTTTGCTCTGTGCGATGCTGTaGAGGGACAGACGGGACACTGCAGAGATGACCTTC +
Preference number: 6 (lower is better)
Translates to: GNGLIPLLCAML*RDRRDTAEMTF
Trigger: GAAGGTCATCTCTGCAGTGTCCCGTCTGTCCCTGCACAGCATCGCACAGAGCAAAGGGATCAGGCCATTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS CCA 72 bp GAACTTGATGCTGATGGCGAAGCGTTCTGCCTCTGCTaGACGCTCTCTGATGAGGTAGGTCCCACTGGCATG +
Preference number: 6 (lower is better)
Translates to: ELDADGEAFCLC*TLSDEVGPTGM
Trigger: CATGCCAGTGGGACCTACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 72 bp ACCACCAGCAGGTCTTGCAGCTTGAACTTGCCATCCTaGACCCTGAGTGTGCACTCCTCCACTTTCTGCCTG +
Preference number: 6 (lower is better)
Translates to: TTSRSCSLNLPS*TLSVHSSTFCL
Trigger: CAGGCAGAAAGTGGAGGAGTGCACACTCAGGGTTCAGGATGGCAAGTTCAAGCTGCAAGACCTGCTGGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS GCA 72 bp ATTGAACTTGATGCTGATGGCGAAGCGTTCTGCCTCTaGTGGACGCTCTCTGATGAGGTAGGTCCCACTGGC +
Preference number: 6 (lower is better)
Translates to: IELDADGEAFCL*WTLSDEVGPTG
Trigger: GCCAGTGGGACCTACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS GCA 72 bp CTCATCATTGAACTTGATGCTGATGGCGAAGCGTTCTaGCTCTGCTGGACGCTCTCTGATGAGGTAGGTCCC +
Preference number: 6 (lower is better)
Translates to: LIIELDADGEAF*LCWTLSDEVGP
Trigger: GGGACCTACCTCATCAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAATGATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 72 bp GCCATCATGGACACATCGATGGCTCGCAGAAAGCTGTaGTGCACCTTGATGAGGTCCTCCAGGTTGATGAAG +
Preference number: 6 (lower is better)
Translates to: AIMDTSMARRKL*CTLMRSSRLMK
Trigger: CTTCATCAACCTGGAGGACCTCATCAAGGTGCATCACAGCTTTCTGCGAGCCATCGATGTGTCCATGATGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 72 bp TCGGGTCATCGGTCATCTTGTGGAAGAGCAGCTCAATaGCCTCCTTCAGCTCATAGCTGTAGCCCTTCCTCT +
Preference number: 6 (lower is better)
Translates to: SGHRSSCGRAAQ*PPSAHSCSPSS
Trigger: AGAGGAAGGGCTACAGCTATGAGCTGAAGGAGGTCATTGAGCTGCTCTTCCACAAGATGACCGATGACCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 72 bp TCGGCTGTAGATCTTCACCACATCACCTTCTCGCAGTaGCAGCTCCCGCATGTCTCGAGCAGCAAAGTTGTA +
Preference number: 6 (lower is better)
Translates to: SAVDLHHITFSQ*QLPHVSSSKVV
Trigger: TACAACTTTGCTGCTCGAGACATGCGGGAGCTGTCACTGCGAGAAGGTGATGTGGTGAAGATCTACAGCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS GCA 72 bp AGGGACCCATGTAGTTCTTCTCAATGTCCTCCAGGGTaGGGTAGTACTTGGCCTCGGTCTCCTGAATCTCTA +
Preference number: 6 (lower is better)
Translates to: RDPCSSSQCPPG*GSTWPRSPESL
Trigger: TAGAGATTCAGGAGACCGAGGCCAAGTACTACCGCACCCTGGAGGACATTGAGAAGAACTACATGGGTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 72 bp TCTTCTTCAAGGTCTCCTTGTCCCGCTTCACTTCATTaGTGTACATGGCCAAGTCCTGCATGGCTTCCAGGG +
Preference number: 6 (lower is better)
Translates to: SSSRSPCPASLH*CTWPSPAWLPG
Trigger: CCCTGGAAGCCATGCAGGACTTGGCCATGTACATCAATGAAGTGAAGCGGGACAAGGAGACCTTGAAGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 72 bp AACCTCTCCCTCAGGCGCAGGGCTCCCAAATATTGCTaGAAGAATGCTCAGGAGGCTCTCAAACTTCTTAGC +
Preference number: 6 (lower is better)
Translates to: NLSLRRRAPKYC*KNAQEALKLLS
Trigger: GCTAAGAAGTTTGAGAGCCTCCTGAGCATTCTTTCAGCAATATTTGGGAGCCCTGCGCCTGAGGGAGAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS CCA 72 bp GACTATGGACCGGACTTTAAGCTCCCCGTCAATCTTTaGCCTCCCAAATTCCTCCAGCTTCACTTGCAGGTT +
Preference number: 6 (lower is better)
Translates to: DYGPDFKLPVNL*PPKFLQLHLQV
Trigger: AACCTGCAAGTGAAGCTGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAGCTTAAAGTCCGGTCCATAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 72 bp ATCTTCTTCAAGGTCTCCTTGTCCCGCTTCACTTCATaGATGTACATGGCCAAGTCCTGCATGGCTTCCAGG +
Preference number: 6 (lower is better)
Translates to: IFFKVSLSRFTS*MYMAKSCMASR
Trigger: CCTGGAAGCCATGCAGGACTTGGCCATGTACATCAATGAAGTGAAGCGGGACAAGGAGACCTTGAAGAAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 72 bp CAAAAACCTCTCCCTCAGGCGCAGGGCTCCCAAATATaGCTGAAAGAATGCTCAGGAGGCTCTCAAACTTCT +
Preference number: 6 (lower is better)
Translates to: QKPLPQAQGSQI*LKECSGGSQTS
Trigger: AGAAGTTTGAGAGCCTCCTGAGCATTCTTTCAGCAATATTTGGGAGCCCTGCGCCTGAGGGAGAGGTTTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS CAA 90 bp CTATCTTTCTCCACCACCTTGATATGTTTCACCTCATCATTGAACTaGATGCTGATGGCGAAGCGTTCTGCCTCTGCTGGACGCTCTCTG +
Preference number: 6 (lower is better)
Translates to: LSFSTTLICFTSSLN*MLMAKRSASAGRSL
Trigger: CAGAGAGCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAATGATGAGGTGAAACATATCAAGGTGGTGGAGAAAGATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 90 bp ATCCAGCTATCTTTCTCCACCACCTTGATATGTTTCACCTCATCATaGAACTTGATGCTGATGGCGAAGCGTTCTGCCTCTGCTGGACGC +
Preference number: 6 (lower is better)
Translates to: IQLSFSTTLICFTSS*NLMLMAKRSASAGR
Trigger: GCGTCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAATGATGAGGTGAAACATATCAAGGTGGTGGAGAAAGATAGCTGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS TCA 72 bp TCAGCTCATAGCTGTAGCCCTTCCTCTTGCACACGATaGCCACCTTGTCAAATAGGAACAGGTACCTGTCTT +
Preference number: 6 (lower is better)
Translates to: SAHSCSPSSCTR*PPCQIGTGTCL
Trigger: AAGACAGGTACCTGTTCCTATTTGACAAGGTGGTCATCGTGTGCAAGAGGAAGGGCTACAGCTATGAGCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CCA 72 bp TTGTCAAATAGGAACAGGTACCTGTCTTGCTTGGTGTaGTTGACTATGGACCGGACTTTAAGCTCCCCGTCA +
Preference number: 6 (lower is better)
Translates to: LSNRNRYLSCLV*LTMDRTLSSPS
Trigger: TGACGGGGAGCTTAAAGTCCGGTCCATAGTCAACCACACCAAGCAAGACAGGTACCTGTTCCTATTTGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 72 bp TCCACCACCTTGATATGTTTCACCTCATCATTGAACTaGATGCTGATGGCGAAGCGTTCTGCCTCTGCTGGA +
Preference number: 6 (lower is better)
Translates to: STTLICFTSSLN*MLMAKRSASAG
Trigger: TCCAGCAGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAATGATGAGGTGAAACATATCAAGGTGGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 90 bp AAGCTCCCCGTCAATCTTTGGCCTCCCAAATTCCTCCAGCTTCACTaGCAGGTTTTCTATGGAGCACTGGAACTCGCTAATCTTCTTCAA +
Preference number: 6 (lower is better)
Translates to: KLPVNLWPPKFLQLH*QVFYGALELANLLQ
Trigger: TTGAAGAAGATTAGCGAGTTCCAGTGCTCCATAGAAAACCTGCAAGTGAAGCTGGAGGAATTTGGGAGGCCAAAGATTGACGGGGAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 90 bp CTTCATGTCTTCCGTCTTGCAGAAGAACTGAAAGCCTTGCTTTCCTaGGAGGTGAATCAGGTAGAAGCCATAGGACCACATCTTCCCATG +
Preference number: 6 (lower is better)
Translates to: LHVFRLAEELKALLS*EVNQVEAIGPHLPM
Trigger: CATGGGAAGATGTGGTCCTATGGCTTCTACCTGATTCACCTCCAAGGAAAGCAAGGCTTTCAGTTCTTCTGCAAGACGGAAGACATGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS CAA 90 bp CTTCATGTCTTCCGTCTTGCAGAAGAACTGAAAGCCTTGCTTTCCTaGGAGGTGAATCAGGTAGAAGCCATAGGACCACTTCTTGATGTC +
Preference number: 6 (lower is better)
Translates to: LHVFRLAEELKALLS*EVNQVEAIGPLLDV
Trigger: GACATCAAGAAGTGGTCCTATGGCTTCTACCTGATTCACCTCCAAGGAAAGCAAGGCTTTCAGTTCTTCTGCAAGACGGAAGACATGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS CCA 72 bp TCCAGGAGGCTCTCAAACTTCTTAGCTTCCGTGATGTaGATCCAGCTATCTTTCTCCACCACCTTGATATGT +
Preference number: 6 (lower is better)
Translates to: SRRLSNFLASVM*IQLSFSTTLIC
Trigger: ACATATCAAGGTGGTGGAGAAAGATAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS CCA 72 bp CTCAGGAGGCTCTCAAACTTCTTAGCTTCCGTGATGTaGATCCAGCTATCTTTCTCCACCACCTTGATATGT +
Preference number: 6 (lower is better)
Translates to: LRRLSNFLASVM*IQLSFSTTLIC
Trigger: ACATATCAAGGTGGTGGAGAAAGATAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS CAA 72 bp TTCCGTCTTGCAGAAGAACTGAAAGCCTTGCTTTCCTaGGAGGTGAATCAGGTAGAAGCCATAGGACCACAT +
Preference number: 6 (lower is better)
Translates to: FRLAEELKALLS*EVNQVEAIGPH
Trigger: ATGTGGTCCTATGGCTTCTACCTGATTCACCTCCAAGGAAAGCAAGGCTTTCAGTTCTTCTGCAAGACGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000185188.8
CDS CAA 72 bp CTTCATGTCTTCCGTCTTGCAGAAGAACTGAAAGCCTaGCTTTCCTTGGAGGTGAATCAGGTAGAAGCCATA +
Preference number: 6 (lower is better)
Translates to: LHVFRLAEELKA*LSLEVNQVEAI
Trigger: TATGGCTTCTACCTGATTCACCTCCAAGGAAAGCAAGGCTTTCAGTTCTTCTGCAAGACGGAAGACATGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 72 bp TCTTTCTCCACCACCTTGATATGTTTCACCTCATCATaGAACTTGATGCTGATGGCGAAGCGTTCTGCCTCT +
Preference number: 6 (lower is better)
Translates to: SFSTTLICFTSS*NLMLMAKRSAS
Trigger: AGAGGCAGAACGCTTCGCCATCAGCATCAAGTTCAATGATGAGGTGAAACATATCAAGGTGGTGGAGAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 90 bp TTCTTAGCTTCCGTGATGTGGATCCAGCTATCTTTCTCCACCACCTaGATATGTTTCACCTCATCATTGAACTTGATGCTGATGGCGAAG +
Preference number: 6 (lower is better)
Translates to: FLASVMWIQLSFSTT*ICFTSSLNLMLMAK
Trigger: CTTCGCCATCAGCATCAAGTTCAATGATGAGGTGAAACATATCAAGGTGGTGGAGAAAGATAGCTGGATCCACATCACGGAAGCTAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 90 bp AAGAGGTCGAAAGGGTCAAACAGCTCACTGTTTCTTAGTCCAAATTaGTCATGGCAGACTTTGAGGAAGGTGCGAATATTCTTCAGACAC +
Preference number: 6 (lower is better)
Translates to: KRSKGSNSSLFLSPN*SWQTLRKVRIFFRH
Trigger: GTGTCTGAAGAATATTCGCACCTTCCTCAAAGTCTGCCATGACAAATTTGGACTAAGAAACAGTGAGCTGTTTGACCCTTTCGACCTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS TCA 72 bp TTGGTAGTCTTGTCGAATGTGTACATCTGGAAGCTATaGTGGTTGGCATTGGCCTTATCTGGCTTGATGTTT +
Preference number: 6 (lower is better)
Translates to: LVVLSNVYIWKL*WLALALSGLMF
Trigger: AAACATCAAGCCAGATAAGGCCAATGCCAACCATCATAGCTTCCAGATGTACACATTCGACAAGACTACCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056176.8
ENSMUST00000185188.8
CDS CAA 90 bp TCAAACAGCTCACTGTTTCTTAGTCCAAATTTGTCATGGCAGACTTaGAGGAAGGTGCGAATATTCTTCAGACACAAGAACTGGGACATC +
Preference number: 6 (lower is better)
Translates to: SNSSLFLSPNLSWQT*RKVRIFFRHKNWDI
Trigger: GATGTCCCAGTTCTTGTGTCTGAAGAATATTCGCACCTTCCTCAAAGTCTGCCATGACAAATTTGGACTAAGAAACAGTGAGCTGTTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS TCA 72 bp CACTGTTTCTTAGTCCAAATTTGTCATGGCAGACTTTaGGGAAGGTGCGAATATTCTTCAGACACAAGAACT +
Preference number: 6 (lower is better)
Translates to: HCFLVQICHGRL*GRCEYSSDTRT
Trigger: AGTTCTTGTGTCTGAAGAATATTCGCACCTTCCTCAAAGTCTGCCATGACAAATTTGGACTAAGAAACAGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8
CDS CAA 72 bp TCACTGTTTCTTAGTCCAAATTTGTCATGGCAGACTTaGAGGAAGGTGCGAATATTCTTCAGACACAAGAAC +
Preference number: 6 (lower is better)
Translates to: SLFLSPNLSWQT*RKVRIFFRHKN
Trigger: GTTCTTGTGTCTGAAGAATATTCGCACCTTCCTCAAAGTCTGCCATGACAAATTTGGACTAAGAAACAGTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000056176.8