Pregenerated sensors for VAT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034993Ensembl transcript IDs: ENSMUST00000040430.8
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCCGGAGCTCCTCCTTCCCTAGCAGTGTAAACAAAGTTTGGGGCTaGACAGCAGAGCTGCCTCCAGGCTCTGGGAAGGCAGCAGCCTCC | + |
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Preference number: 1 (lower is better) Translates to: CRSSSFPSSVNKVWG*TAELPPGSGKAAAS Trigger: GGAGGCTGCTGCCTTCCCAGAGCCTGGAGGCAGCTCTGCTGTTCAGCCCCAAACTTTGTTTACACTGCTAGGGAAGGAGGAGCTCCGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR GCA 90 bp | CCCCTCCCAGAGCGTAAGCTAGGGAGTCGGTCTGATTCCTGTCCTTaGTGTAGGAGGCAGCAAACTCAAGCCGGAAGAAGTCTAATTGTG | + |
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Preference number: 1 (lower is better) Translates to: PLPERKLGSRSDSCP*CRRQQTQAGRSLIV Trigger: CACAATTAGACTTCTTCCGGCTTGAGTTTGCTGCCTCCTACAGCAAGGACAGGAATCAGACCGACTCCCTAGCTTACGCTCTGGGAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR TCA 90 bp | AAGAAGTCTAATTGTGCTTACGACATTGGGGACAGGAGACAAGGTTaGATACTGATCAAGTCCAGGGGTGGGCCTCGTCGGCCTGGGCTG | + |
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Preference number: 1 (lower is better) Translates to: KKSNCAYDIGDRRQG*ILIKSRGGPRRPGL Trigger: CAGCCCAGGCCGACGAGGCCCACCCCTGGACTTGATCAGTATTCAACCTTGTCTCCTGTCCCCAATGTCGTAAGCACAATTAGACTTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGGGCTGCGGGGATACTACGGGGGACACAGGTACATGCTGGACTCACACAGAAGCATCGTGACAGGATaGAATGTGAGAGGCTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: PGLRGYYGGHRYMLDSHRSIVTG*NVRGWW Trigger: CCACCAGCCTCTCACATTTCATCCTGTCACGATGCT...TCTGTGTGAGTCCAGCATGTACCTGTGTCCCCCGTAGTATCCCCGCAGCCCAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR CCA 90 bp | TTTGGCAGTGTTGGACTGGGGAGGAGTAGGCCTCAGCTCCACCAGGACGAGGAAGCCCAGACATCCAAGTaGTCACTTCCCAACCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: FGSVGLGRSRPQLHQDEEAQTSK*SLPNLS Trigger: GGAGAGGTTGGGAAGTGACCACTTGGATGTCTGGGC...TTCCTCGTCCTGGTGGAGCTGAGGCCTACTCCTCCCCAGTCCAACACTGCCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTGTAGGAGGCAGCAAACTCAAGCCGGAAGAAGTCTAATTGTGCTTACGACACTTCCCAACCTCTCCTaGGGGCAGGAAGGGGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: CCRRQQTQAGRSLIVLTTLPNLS*GQEGVG Trigger: CCCCACCCCTTCCTGCCCTCAGGAGAGGTTGGGAAG...TGTCGTAAGCACAATTAGACTTCTTCCGGCTTGAGTTTGCTGCCTCCTACAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR TCA 90 bp | TCCAGTAGCCCTGACTCTTTTAACCAGCCTAGTTATTCCCTTGCCGGAGCTCCTATCCAAAGGCCTCAGTaGAGGGTGGGGTACCCAGTA | + |
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Preference number: 2 (lower is better) Translates to: SSSPDSFNQPSYSLAGAPIQRPQ*RVGYPV Trigger: TACTGGGTACCCCACCCTTCACTGAGGCCTTTGGAT...AGGAGCTCCGGCAAGGGAATAACTAGGCTGGTTAAAAGAGTCAGGGCTACTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR TCA 90 bp | CCCTACATAGCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTGGTCCCAGAATGGGGAGGGAGAGCCCTaGGCGAAGGGCAAGAGCGAG | + |
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Preference number: 2 (lower is better) Translates to: PYIAKERNVLEFSLWSQNGEGEP*AKGKSE Trigger: CTCGCTCTTGCCCTTCGCTCAGGGCTCTCCCTCCCC...ATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGCTATGTAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR CCA 90 bp | GCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTGGTCCCAGAATAAGACCCAGGGCCTCAGTGAAGGGTaGGGTACCCAGTACCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: AKERNVLEFSLWSQNKTQGLSEG*GTQYPS Trigger: GGAGGGGTACTGGGTACCCCACCCTTCACTGAGGCC...CTGGGTCTTATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR GCA 90 bp | CCACCTAGCCTCAAAGGTCCCCACCTTGGCTCCAGTAGCCCTGACTCTTTTAACCAAAGGAAAGAAATGTaGTTGAATTCTCACTTTGGT | + |
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Preference number: 2 (lower is better) Translates to: PPSLKGPHLGSSSPDSFNQRKEM*LNSHFG Trigger: ACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTG...GTTAAAAGAGTCAGGGCTACTGGAGCCAAGGTGGGGACCTTTGAGGCTAGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR GCA 90 bp | GCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTGGTCCCAGAATAAGACCCAGGCTGATCCAGCTCACTaGCTTTCTTCTCCACTGACA | + |
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Preference number: 2 (lower is better) Translates to: AKERNVLEFSLWSQNKTQADPAH*LSSPLT Trigger: TGTCAGTGGAGAAGAAAGGCAGTGAGCTGGATCAGC...CTGGGTCTTATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR TCA 72 bp | CTTACGACATTGGGGACAGGAGACAAGGTTGAATACTaGTCAAGTCCAGGGGTGGGCCTCGTCGGCCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: LTTLGTGDKVEY*SSPGVGLVGLG Trigger: GCCCAGGCCGACGAGGCCCACCCCTGGACTTGATCAGTATTCAACCTTGTCTCCTGTCCCCAATGTCGTAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR TCA 72 bp | TCCTCCTTCCCTAGCAGTGTAAACAAAGTTTGGGGCTaGACAGCAGAGCTGCCTCCAGGCTCTGGGAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: SSFPSSVNKVWG*TAELPPGSGKA Trigger: TGCCTTCCCAGAGCCTGGAGGCAGCTCTGCTGTTCAGCCCCAAACTTTGTTTACACTGCTAGGGAAGGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR TCA 72 bp | AACAGAGAGGCCGGGTCCCTCCCTCCACACTCCCTCTaGCAGTGGCTGGAGTTAAGAGCTTTCTCTAATCCA | + |
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Preference number: 3 (lower is better) Translates to: NREAGSLPPHSL*QWLELRAFSNP Trigger: TGGATTAGAGAAAGCTCTTAACTCCAGCCACTGTCAGAGGGAGTGTGGAGGGAGGGACCCGGCCTCTCTGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR TCA 72 bp | AGCAGAAATCACACTTCCCACATGGAGGCCTCAATTTaGCAACAGAGAGGCCGGGTCCCTCCCTCCACACTC | + |
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Preference number: 3 (lower is better) Translates to: SRNHTSHMEASI*QQRGRVPPSTL Trigger: GAGTGTGGAGGGAGGGACCCGGCCTCTCTGTTGTCAAATTGAGGCCTCCATGTGGGAAGTGTGATTTCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR GCA 72 bp | GAGCGTAAGCTAGGGAGTCGGTCTGATTCCTGTCCTTaGTGTAGGAGGCAGCAAACTCAAGCCGGAAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: ERKLGSRSDSCP*CRRQQTQAGRS Trigger: ACTTCTTCCGGCTTGAGTTTGCTGCCTCCTACAGCAAGGACAGGAATCAGACCGACTCCCTAGCTTACGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR TCA 72 bp | AATTGTGCTTACGACATTGGGGACAGGAGACAAGGTTaGATACTGATCAAGTCCAGGGGTGGGCCTCGTCGG | + |
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Preference number: 3 (lower is better) Translates to: NCAYDIGDRRQG*ILIKSRGGPRR Trigger: CCGACGAGGCCCACCCCTGGACTTGATCAGTATTCAACCTTGTCTCCTGTCCCCAATGTCGTAAGCACAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR CAA 90 bp | CCACCTAGCCTCAAAGGTCCCCACCTTGGCTCCAGTAGCCCTGACTCTTTTAACGGACAGGAGACAAGGTaGAATACTGATCAAGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: PPSLKGPHLGSSSPDSFNGQETR*NTDQVQ Trigger: CTGGACTTGATCAGTATTCAACCTTGTCTCCTGTCC...GTTAAAAGAGTCAGGGCTACTGGAGCCAAGGTGGGGACCTTTGAGGCTAGGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR TCA 72 bp | AGAATAAGACCCAGCGTTGTCTCCCAGAACTCTGGCTaGTCCAGCTCACTGCCTTTCTTCTCCACTGACAGA | + |
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Preference number: 3 (lower is better) Translates to: RIRPSVVSQNSG*SSSLPFFSTDR Trigger: TCTGTCAGTGGAGAAGAAAGGCAGTGAGCTGGATCAGCCAGAGTTCTGGGAGACAACGCTGGGTCTTATTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR CAA 90 bp | CCCTACATAGCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTGGTCCCAGAATAGGGATTGGCTAACCTaGGCACAAAAGCAGCATGGT | + |
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Preference number: 3 (lower is better) Translates to: PYIAKERNVLEFSLWSQNRDWLT*AQKQHG Trigger: ACCATGCTGCTTTTGTGCCAAGGTTAGCCAATCCCT...ATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGCTATGTAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR-3UTR CAA 90 bp | CCCTACATAGCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTGGTCCCAGAATATTGTGCTTACGACATaGGGGACAGGAGACAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: PYIAKERNVLEFSLWSQNIVLTT*GTGDKV Trigger: AACCTTGTCTCCTGTCCCCAATGTCGTAAGCACAAT...ATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGCTATGTAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR CCA 72 bp | ATAGCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTaGTCCCAGAATAAGACCCAGCGTTGTCTCCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: IAKERNVLEFSL*SQNKTQRCLPE Trigger: TTCTGGGAGACAACGCTGGGTCTTATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | CCACCTAGCCTCAAAGGTCCCCACCTTGGCTCCAGTAGCCCTGACTCTTTTAACCCTCCATGCCGGGGGTaGCCGGCAGAGGCGGTAGTC | + |
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Preference number: 4 (lower is better) Translates to: PPSLKGPHLGSSSPDSFNPPCRG*PAEAVV Trigger: GACTACCGCCTCTGCCGGTCACCCCCGGCATGGAGG...GTTAAAAGAGTCAGGGCTACTGGAGCCAAGGTGGGGACCTTTGAGGCTAGGTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | CAGGGCCCAGACATCCAAGTGGTCACTTCCCAACCTCTCCTGAGGGCAGGAAGGGCCCTTGGCCGTGTCTaGTCCACCCAGAGGGTCCAT | + |
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Preference number: 4 (lower is better) Translates to: QGPDIQVVTSQPLLRAGRALGRV*STQRVH Trigger: ATGGACCCTCTGGGTGGATCAGACACGGCCAAGGGC...CCTTCCTGCCCTCAGGAGAGGTTGGGAAGTGACCACTTGGATGTCTGGGCCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | CCCCTGTCCCCTTGGCAGGGCCCAGACATCCAAGTGGTCACTTCCCAACCTCTCGCTGTCACACTGAACTaGTTCCACCAGGTGCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: PLSPWQGPDIQVVTSQPLAVTLN*FHQVRA Trigger: GGCCCGCACCTGGTGGAATCAGTTCAGTGTGACAGC...GAGAGGTTGGGAAGTGACCACTTGGATGTCTGGGCCCTGCCAAGGGGACAGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | TTTGGCAGTGTTGGACTGGGGAGGAGTAGGCCTCAGCTCCACCAGGACGAGGAAACTGCAGGGCTGCCATaGCCACGCCACCTGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: FGSVGLGRSRPQLHQDEETAGLP*PRHLQP Trigger: TGGCTGCAGGTGGCGTGGGCATGGCAGCCCTGCAGT...TTCCTCGTCCTGGTGGAGCTGAGGCCTACTCCTCCCCAGTCCAACACTGCCAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CCA 90 bp | TGGGGACAGGAGACAAGGTTGAATACTGATCAAGTCCAGGGGTGGGCCTCGTCGTCGCCGCTGCCACAGTaGCCGCCTCAGCTGCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: WGQETRLNTDQVQGWASSSPLPQ*PPQLLP Trigger: GGGAAGCAGCTGAGGCGGCCACTGTGGCAGCGGCGA...CGACGAGGCCCACCCCTGGACTTGATCAGTATTCAACCTTGTCTCCTGTCCCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CCA 90 bp | GAGGCTGGTGGGCAACACGACAGGACTTCCCATCTTCTCCCTCCCCGGCTCTCCGCACCTCGTGCTTGCTaGCTGAGGCCGTTCCAAACA | + |
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Preference number: 4 (lower is better) Translates to: EAGGQHDRTSHLLPPRLSAPRAC*LRPFQT Trigger: TGTTTGGAACGGCCTCAGCCAGCAAGCACGAGGTGC...GGAGAGCCGGGGAGGGAGAAGATGGGAAGTCCTGTCGTGTTGCCCACCAGCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | CCCCTGTCCCCTTGGCAGGGCCCAGACATCCAAGTGGTCACTTCCCAACCTCTCCTCCTGCCACATCCCTaGCCGGTTCAACACCATCAC | + |
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Preference number: 4 (lower is better) Translates to: PLSPWQGPDIQVVTSQPLLLPHP*PVQHHH Trigger: GTGATGGTGTTGAACCGGTCAGGGATGTGGCAGGAG...GAGAGGTTGGGAAGTGACCACTTGGATGTCTGGGCCCTGCCAAGGGGACAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | TGGGGACAGGAGACAAGGTTGAATACTGATCAAGTCCAGGGGTGGGCCTCGTCGGCACAACTGCAGGGCTaGCATGCCCACGCCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: WGQETRLNTDQVQGWASSAQLQG*HAHATC Trigger: GCAGGTGGCGTGGGCATGGCAGCCCTGCAGTTGTGC...CGACGAGGCCCACCCCTGGACTTGATCAGTATTCAACCTTGTCTCCTGTCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | TCGGCCTGGGCTGCGGGGATACTACGGGGGACACAGGTACATGCTGGACTCACAACTGATTCCACCAGGTaGGGGCCATGGCCATCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SAWAAGILRGTQVHAGLTTDSTR*GPWPSG Trigger: ACCTGATGGCCATGGCCCGCACCTGGTGGAATCAGT...TGTGAGTCCAGCATGTACCTGTGTCCCCCGTAGTATCCCCGCAGCCCAGGCCGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | AGGCTGGTGGGCAACACGACAGGACTTCCCATCTTCTCCCTCCCCGGCTCTCCACACCCAGAGGGTCCATaGCGATGTCTACTCCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RLVGNTTGLPIFSLPGSPHPEGP*RCLLLW Trigger: CCAAAGGAGTAGACATCGTCATGGACCCTCTGGGTG...TGGAGAGCCGGGGAGGGAGAAGATGGGAAGTCCTGTCGTGTTGCCCACCAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | CAGCAGAGCTGCCTCCAGGCTCTGGGAAGGCAGCAGCCTCCCTACATAGCAAAGCATGCCCACGCCACCTaGAGCCATGTGTACCAAGAC | + |
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Preference number: 4 (lower is better) Translates to: QQSCLQALGRQQPPYIAKHAHAT*SHVYQD Trigger: GTCTTGGTACACATGGCTGCAGGTGGCGTGGGCATG...CTTTGCTATGTAGGGAGGCTGCTGCCTTCCCAGAGCCTGGAGGCAGCTCTGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CCA 90 bp | TGGGGACAGGAGACAAGGTTGAATACTGATCAAGTCCAGGGGTGGGCCTCGTCGACCAGGTGCGGGCCATaGCCATCAGGTTCCGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: WGQETRLNTDQVQGWASSTRCGP*PSGSAW Trigger: CCAAGCGGAACCTGATGGCCATGGCCCGCACCTGGT...CGACGAGGCCCACCCCTGGACTTGATCAGTATTCAACCTTGTCTCCTGTCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | TCTCCCAGAACTCTGGCTGATCCAGCTCACTGCCTTTCTTCTCCACTGACAGAGAGCCACCGAAGCCGGTaGGTACCAGGCAGCGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SPRTLADPAHCLSSPLTESHRSR*VPGSAV Trigger: CACTGCGCTGCCTGGTACTCACCGGCTTCGGTGGCT...CTCTGTCAGTGGAGAAGAAAGGCAGTGAGCTGGATCAGCCAGAGTTCTGGGAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | TTTGGCAGTGTTGGACTGGGGAGGAGTAGGCCTCAGCTCCACCAGGACGAGGAACTCGTGCTTGCTGGCTaGGGCCGTTCCAAACACTGT | + |
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Preference number: 4 (lower is better) Translates to: FGSVGLGRSRPQLHQDEELVLAG*GRSKHC Trigger: ACAGTGTTTGGAACGGCCTCAGCCAGCAAGCACGAG...TTCCTCGTCCTGGTGGAGCTGAGGCCTACTCCTCCCCAGTCCAACACTGCCAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | TTTGGCAGTGTTGGACTGGGGAGGAGTAGGCCTCAGCTCCACCAGGACGAGGAACTTTGCCCATGGGTTTaGGGAGGTGGTAGCCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: FGSVGLGRSRPQLHQDEELCPWV*GGGSPW Trigger: CCAAGGGCTACCACCTCCTCAAACCCATGGGCAAAG...TTCCTCGTCCTGGTGGAGCTGAGGCCTACTCCTCCCCAGTCCAACACTGCCAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| 3UTR CAA 72 bp | AGCACACAGGATAGGGCAGGGAGGGATTGGCTAACCTaGGCACAAAAGCAGCATGGTAGGCCCAGGGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: STQDRAGRDWLT*AQKQHGRPRER Trigger: CCTCTCCCTGGGCCTACCATGCTGCTTTTGTGCCAAGGTTAGCCAATCCCTCCCTGCCCTATCCTGTGTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | CCACCTAGCCTCAAAGGTCCCCACCTTGGCTCCAGTAGCCCTGACTCTTTTAACTCAGCACCTCGTGCTTaGTGGCTGAGGCCGTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: PPSLKGPHLGSSSPDSFNSAPRA*WLRPFQ Trigger: TTGGAACGGCCTCAGCCAGCAAGCACGAGGTGCTGA...GTTAAAAGAGTCAGGGCTACTGGAGCCAAGGTGGGGACCTTTGAGGCTAGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CCA 90 bp | CCCCTGTCCCCTTGGCAGGGCCCAGACATCCAAGTGGTCACTTCCCAACCTCTCCTTCTTCAAAGGTCATaGCCTCAGGCATCAGGAAAG | + |
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Preference number: 4 (lower is better) Translates to: PLSPWQGPDIQVVTSQPLLLQRS*PQASGK Trigger: CTTTCCTGATGCCTGAGGCCATGACCTTTGAAGAAG...GAGAGGTTGGGAAGTGACCACTTGGATGTCTGGGCCCTGCCAAGGGGACAGGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | TCCAGTAGCCCTGACTCTTTTAACCAGCCTAGTTATTCCCTTGCCGGAGCTCCTAGTCGATGGGGTGTGTaGCCCCGTTCTCCTTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SSSPDSFNQPSYSLAGAPSRWGV*PRSPSA Trigger: TGCTGAAGGAGAACGGGGTCACACACCCCATCGACT...AGGAGCTCCGGCAAGGGAATAACTAGGCTGGTTAAAAGAGTCAGGGCTACTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | GCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTGGTCCCAGAATAAGACCCAGTCGACTGTCGGGGGCTaGGAAGGCGCACCCTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: AKERNVLEFSLWSQNKTQSTVGG*EGAPSP Trigger: CGGGGAGGGTGCGCCTTCGCAGCCCCCGACAGTCGA...CTGGGTCTTATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | CCACCTAGCCTCAAAGGTCCCCACCTTGGCTCCAGTAGCCCTGACTCTTTTAACCTCGAAGGGCCAGACTaGGTCAATTCGAGGTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: PPSLKGPHLGSSSPDSFNLEGPD*VNSRFD Trigger: ATCAAACCTCGAATTGACTCAGTCTGGCCCTTCGAG...GTTAAAAGAGTCAGGGCTACTGGAGCCAAGGTGGGGACCTTTGAGGCTAGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | TGCTGTAGGAGGCAGCAAACTCAAGCCGGAAGAAGTCTAATTGTGCTTACGACAACAGCTCGGTTGGCCTaGAGCAGCTGCAGAGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: CCRRQQTQAGRSLIVLTTTARLA*SSCRAV Trigger: GACAGCTCTGCAGCTGCTGCAGGCCAACCGAGCTGT...TGTCGTAAGCACAATTAGACTTCTTCCGGCTTGAGTTTGCTGCCTCCTACAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | TGCTGTAGGAGGCAGCAAACTCAAGCCGGAAGAAGTCTAATTGTGCTTACGACAACAGTTACTTCCTCCTaGCACATCCCTGACCGGTTC | + |
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Preference number: 4 (lower is better) Translates to: CCRRQQTQAGRSLIVLTTTVTSS*HIPDRF Trigger: GAACCGGTCAGGGATGTGGCAGGAGGAAGTAACTGT...TGTCGTAAGCACAATTAGACTTCTTCCGGCTTGAGTTTGCTGCCTCCTACAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR GCA 90 bp | TGTAGGAGGCAGCAAACTCAAGCCGGAAGAAGTCTAATTGTGCTTACGACATTGTTGGCCTGCAGCAGCTaGAGAGCTGTCACACTGAAC | + |
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Preference number: 4 (lower is better) Translates to: CRRQQTQAGRSLIVLTTLLACSS*RAVTLN Trigger: GTTCAGTGTGACAGCTCTGCAGCTGCTGCAGGCCAA...CAATGTCGTAAGCACAATTAGACTTCTTCCGGCTTGAGTTTGCTGCCTCCTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CCA 90 bp | GCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTGGTCCCAGAATAAGACCCAGCACACACAGCTCGGTTaGCCTGCAGCAGCTGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: AKERNVLEFSLWSQNKTQHTQLG*PAAAAE Trigger: CTCTGCAGCTGCTGCAGGCCAACCGAGCTGTGTGTG...CTGGGTCTTATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR TCA 90 bp | GCAAAGGAAAGAAATGTGCTTGAATTCTCACTTTGGTCCCAGAATAAGACCCAGGGTTTGATGTGGCCCTaGTTGTACAGAGCCACGAGG | + |
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Preference number: 4 (lower is better) Translates to: AKERNVLEFSLWSQNKTQGLMWP*LYRATR Trigger: CCTCGTGGCTCTGTACAATCAGGGCCACATCAAACC...CTGGGTCTTATTCTGGGACCAAAGTGAGAATTCAAGCACATTTCTTTCCTTTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 90 bp | GCCGGTGAGTACCAGGCAGCGCAGTGGCGGTGCCGAAGCGGATGCTaGCGCTTCGGGGGCCGGGGGTGGCTGCGGGTCGCTTGCCACCTC | + |
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Preference number: 5 (lower is better) Translates to: AGEYQAAQWRCRSGC*RFGGRGWLRVACHL Trigger: GAGGTGGCAAGCGACCCGCAGCCACCCCCGGCCCCCGAAGCGTCAGCATCCGCTTCGGCACCGCCACTGCGCTGCCTGGTACTCACCGGC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 90 bp | CTTCGCCCACTGCCACTACCACGCCCGCGCCCTCCATGCCGGGGGTaGCCGGCAGAGGCGGTAGTCGGTCGTACAGCCCTTGGCGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LRPLPLPRPRPPCRG*PAEAVVGRTALGGP Trigger: TGGGCCGCCAAGGGCTGTACGACCGACTACCGCCTCTGCCGGTCACCCCCGGCATGGAGGGCGCGGGCGTGGTAGTGGCAGTGGGCGAAG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS CCA 90 bp | ATGCCGGGGGTGACCGGCAGAGGCGGTAGTCGGTCGTACAGCCCTTaGCGGCCCATGAGGTCGGCGAAGTTGAGCCCACAGGCTCGCACG | + |
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Preference number: 5 (lower is better) Translates to: MPGVTGRGGSRSYSP*RPMRSAKLSPQART Trigger: CGTGCGAGCCTGTGGGCTCAACTTCGCCGACCTCATGGGCCGCCAAGGGCTGTACGACCGACTACCGCCTCTGCCGGTCACCCCCGGCAT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 90 bp | CCGGCCGGCTCTGCAGCTTCACCTTATCGTAGCCACCGAAGCCGGTaGGTACCAGGCAGCGCAGTGGCGGTGCCGAAGCGGATGCTGACG | + |
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Preference number: 5 (lower is better) Translates to: PAGSAASPYRSHRSR*VPGSAVAVPKRMLT Trigger: CGTCAGCATCCGCTTCGGCACCGCCACTGCGCTGCCTGGTACTCACCGGCTTCGGTGGCTACGATAAGGTGAAGCTGCAGAGCCGGCCGG 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS GCA 90 bp | CTCCACGGTGCGGCACAACTGCAGGGCTGCCATGCCCACGCCACCTaGAGCCATGTGTACCAAGACGCTATGGCCCGGTCTCAGGTTGCC | + |
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Preference number: 5 (lower is better) Translates to: LHGAAQLQGCHAHAT*SHVYQDAMARSQVA Trigger: GGCAACCTGAGACCGGGCCATAGCGTCTTGGTACACATGGCTGCAGGTGGCGTGGGCATGGCAGCCCTGCAGTTGTGCCGCACCGTGGAG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS GCA 90 bp | GCTTGCTGGCTGAGGCCGTTCCAAACACTGTCACGTTCTCCACGGTaGGGCACAACTGCAGGGCTGCCATGCCCACGCCACCTGCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: ACWLRPFQTLSRSPR*GTTAGLPCPRHLQP Trigger: TGGCTGCAGGTGGCGTGGGCATGGCAGCCCTGCAGTTGTGCCGCACCGTGGAGAACGTGACAGTGTTTGGAACGGCCTCAGCCAGCAAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS GCA 90 bp | ACACTGTCACGTTCTCCACGGTGCGGCACAACTGCAGGGCTGCCATaGCCACGCCACCTGCAGCCATGTGTACCAAGACGCTATGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: TLSRSPRCGTTAGLP*PRHLQPCVPRRYGP Trigger: CGGGCCATAGCGTCTTGGTACACATGGCTGCAGGTGGCGTGGGCATGGCAGCCCTGCAGTTGTGCCGCACCGTGGAGAACGTGACAGTGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 90 bp | GGGGTGTGTGACCCCGTTCTCCTTCAGCACCTCGTGCTTGCTGGCTaGGGCCGTTCCAAACACTGTCACGTTCTCCACGGTGCGGCACAA | + |
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Preference number: 5 (lower is better) Translates to: GVCDPVLLQHLVLAG*GRSKHCHVLHGAAQ Trigger: TTGTGCCGCACCGTGGAGAACGTGACAGTGTTTGGAACGGCCTCAGCCAGCAAGCACGAGGTGCTGAAGGAGAACGGGGTCACACACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CAA 90 bp | CCCCTGTCCCCTTGGCAGGGCCCAGACATCCAAGTGGTCACTTCCCAACCTCTCTGGCCCGGTCTCAGGTaGCCGAAGTCAAAGAGAACC | + |
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Preference number: 5 (lower is better) Translates to: PLSPWQGPDIQVVTSQPLWPGLR*PKSKRT Trigger: GGTTCTCTTTGACTTCGGCAACCTGAGACCGGGCCA...GAGAGGTTGGGAAGTGACCACTTGGATGTCTGGGCCCTGCCAAGGGGACAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CAA 90 bp | GATAGGGCAGGGAGGGATTGGCTAACCTTGGCACAAAAGCAGCATGGTAGGCCCTTCAGCACCTCGTGCTaGCTGGCTGAGGCCGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: DRAGRDWLTLAQKQHGRPFSTSC*LAEAVP Trigger: TGGAACGGCCTCAGCCAGCAAGCACGAGGTGCTGAA...GGGCCTACCATGCTGCTTTTGTGCCAAGGTTAGCCAATCCCTCCCTGCCCTATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 90 bp | AACTTTGCCCATGGGTTTGAGGAGGTGGTAGCCCTTGGCCGTGTCTaGTCCACCCAGAGGGTCCATGACGATGTCTACTCCTTTGGGGGA | + |
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Preference number: 5 (lower is better) Translates to: NFAHGFEEVVALGRV*STQRVHDDVYSFGG Trigger: TCCCCCAAAGGAGTAGACATCGTCATGGACCCTCTGGGTGGATCAGACACGGCCAAGGGCTACCACCTCCTCAAACCCATGGGCAAAGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CAA 90 bp | TTTGGCAGTGTTGGACTGGGGAGGAGTAGGCCTCAGCTCCACCAGGACGAGGAAGGAACCAGGAGGACTTaGCCTATGTTCTTCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: FGSVGLGRSRPQLHQDEEGTRRT*PMFFFS Trigger: GGAGAAGAAGAACATAGGCAAAGTCCTCCTGGTTCC...TTCCTCGTCCTGGTGGAGCTGAGGCCTACTCCTCCCCAGTCCAACACTGCCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 90 bp | TTCTCGAAGGGCCAGACTGAGTCAATTCGAGGTTTGATGTGGCCCTaGTTGTACAGAGCCACGAGGCGGGTGACCACGCTATTGACGAGT | + |
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Preference number: 5 (lower is better) Translates to: FSKGQTESIRGLMWP*LYRATRRVTTLLTS Trigger: ACTCGTCAATAGCGTGGTCACCCGCCTCGTGGCTCTGTACAATCAGGGCCACATCAAACCTCGAATTGACTCAGTCTGGCCCTTCGAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CAA 90 bp | TGTAGGAGGCAGCAAACTCAAGCCGGAAGAAGTCTAATTGTGCTTACGACATTGGCCATCAGGTTCCGCTaGGGGCCCGTCAGCAGGTTA | + |
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Preference number: 5 (lower is better) Translates to: CRRQQTQAGRSLIVLTTLAIRFR*GPVSRL Trigger: TAACCTGCTGACGGGCCCCAAGCGGAACCTGATGGC...CAATGTCGTAAGCACAATTAGACTTCTTCCGGCTTGAGTTTGCTGCCTCCTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS-3UTR CAA 90 bp | TGTAGGAGGCAGCAAACTCAAGCCGGAAGAAGTCTAATTGTGCTTACGACATTGCCACACACAGCTCGGTaGGCCTGCAGCAGCTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: CRRQQTQAGRSLIVLTTLPHTAR*ACSSCR Trigger: TCTGCAGCTGCTGCAGGCCAACCGAGCTGTGTGTGG...CAATGTCGTAAGCACAATTAGACTTCTTCCGGCTTGAGTTTGCTGCCTCCTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS GCA 90 bp | TCAGGCCCAGGAACCAGGAGGACTTTGCCTATGTTCTTCTTCTCCTaGATCTGTTTCATTGCATCTGCCACCTTCTCGAAGGGCCAGACT | + |
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Preference number: 5 (lower is better) Translates to: SGPGTRRTLPMFFFS*ICFIASATFSKGQT Trigger: AGTCTGGCCCTTCGAGAAGGTGGCAGATGCAATGAAACAGATGCAGGAGAAGAAGAACATAGGCAAAGTCCTCCTGGTTCCTGGGCCTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS GCA 72 bp | GGCTGCGGGTCGCTTGCCACCTCGACTGTCGGGGGCTaGGAAGGCGCACCCTCCCCGGCTCCGGTCCCGGTC | + |
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Preference number: 6 (lower is better) Translates to: GCGSLATSTVGG*EGAPSPAPVPV Trigger: GACCGGGACCGGAGCCGGGGAGGGTGCGCCTTCGCAGCCCCCGACAGTCGAGGTGGCAAGCGACCCGCAGCC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS CAA 90 bp | GAGGTCGGCGAAGTTGAGCCCACAGGCTCGCACGCGCAGCGTCAATaGACCCGGACCCGGGGCCGGGGGCACCGCCGGCCGGCTCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: EVGEVEPTGSHAQRQ*TRTRGRGHRRPALQ Trigger: CTGCAGAGCCGGCCGGCGGTGCCCCCGGCCCCGGGTCCGGGTCAATTGACGCTGCGCGTGCGAGCCTGTGGGCTCAACTTCGCCGACCTC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | TACCAGGCAGCGCAGTGGCGGTGCCGAAGCGGATGCTaGCGCTTCGGGGGCCGGGGGTGGCTGCGGGTCGCT | + |
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Preference number: 6 (lower is better) Translates to: YQAAQWRCRSGC*RFGGRGWLRVA Trigger: AGCGACCCGCAGCCACCCCCGGCCCCCGAAGCGTCAGCATCCGCTTCGGCACCGCCACTGCGCTGCCTGGTA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | CTGCCACTACCACGCCCGCGCCCTCCATGCCGGGGGTaGCCGGCAGAGGCGGTAGTCGGTCGTACAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: LPLPRPRPPCRG*PAEAVVGRTAL Trigger: AAGGGCTGTACGACCGACTACCGCCTCTGCCGGTCACCCCCGGCATGGAGGGCGCGGGCGTGGTAGTGGCAG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS CCA 72 bp | GTGACCGGCAGAGGCGGTAGTCGGTCGTACAGCCCTTaGCGGCCCATGAGGTCGGCGAAGTTGAGCCCACAG | + |
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Preference number: 6 (lower is better) Translates to: VTGRGGSRSYSP*RPMRSAKLSPQ Trigger: CTGTGGGCTCAACTTCGCCGACCTCATGGGCCGCCAAGGGCTGTACGACCGACTACCGCCTCTGCCGGTCAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS GCA 72 bp | GCGGCACAACTGCAGGGCTGCCATGCCCACGCCACCTaGAGCCATGTGTACCAAGACGCTATGGCCCGGTCT | + |
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Preference number: 6 (lower is better) Translates to: AAQLQGCHAHAT*SHVYQDAMARS Trigger: AGACCGGGCCATAGCGTCTTGGTACACATGGCTGCAGGTGGCGTGGGCATGGCAGCCCTGCAGTTGTGCCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | TCTGCAGCTTCACCTTATCGTAGCCACCGAAGCCGGTaGGTACCAGGCAGCGCAGTGGCGGTGCCGAAGCGG | + |
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Preference number: 6 (lower is better) Translates to: SAASPYRSHRSR*VPGSAVAVPKR Trigger: CCGCTTCGGCACCGCCACTGCGCTGCCTGGTACTCACCGGCTTCGGTGGCTACGATAAGGTGAAGCTGCAGA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | GACCCCGTTCTCCTTCAGCACCTCGTGCTTGCTGGCTaGGGCCGTTCCAAACACTGTCACGTTCTCCACGGT | + |
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Preference number: 6 (lower is better) Translates to: DPVLLQHLVLAG*GRSKHCHVLHG Trigger: ACCGTGGAGAACGTGACAGTGTTTGGAACGGCCTCAGCCAGCAAGCACGAGGTGCTGAAGGAGAACGGGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | TTGGCCTGCAGCAGCTGCAGAGCTGTCACACTGAACTaGTTCCACCAGGTGCGGGCCATGGCCATCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LACSSCRAVTLN*FHQVRAMAIRF Trigger: GAACCTGATGGCCATGGCCCGCACCTGGTGGAATCAGTTCAGTGTGACAGCTCTGCAGCTGCTGCAGGCCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS GCA 72 bp | ATGGGGTGTGTGACCCCGTTCTCCTTCAGCACCTCGTaGTTGCTGGCTGAGGCCGTTCCAAACACTGTCACG | + |
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Preference number: 6 (lower is better) Translates to: MGCVTPFSFSTS*LLAEAVPNTVT Trigger: CGTGACAGTGTTTGGAACGGCCTCAGCCAGCAAGCACGAGGTGCTGAAGGAGAACGGGGTCACACACCCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS CAA 72 bp | GGGTGTGTGACCCCGTTCTCCTTCAGCACCTCGTGCTaGCTGGCTGAGGCCGTTCCAAACACTGTCACGTTC | + |
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Preference number: 6 (lower is better) Translates to: GCVTPFSFSTSC*LAEAVPNTVTF Trigger: GAACGTGACAGTGTTTGGAACGGCCTCAGCCAGCAAGCACGAGGTGCTGAAGGAGAACGGGGTCACACACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | CCACATAGTCAGTCGTGTGGTAGTCGATGGGGTGTGTaGCCCCGTTCTCCTTCAGCACCTCGTGCTTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PHSQSCGSRWGV*PRSPSAPRACW Trigger: CCAGCAAGCACGAGGTGCTGAAGGAGAACGGGGTCACACACCCCATCGACTACCACACGACTGACTATGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | CATGGGTTTGAGGAGGTGGTAGCCCTTGGCCGTGTCTaGTCCACCCAGAGGGTCCATGACGATGTCTACTCC | + |
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Preference number: 6 (lower is better) Translates to: HGFEEVVALGRV*STQRVHDDVYS Trigger: GGAGTAGACATCGTCATGGACCCTCTGGGTGGATCAGACACGGCCAAGGGCTACCACCTCCTCAAACCCATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | GGCCAGACTGAGTCAATTCGAGGTTTGATGTGGCCCTaGTTGTACAGAGCCACGAGGCGGGTGACCACGCTA | + |
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Preference number: 6 (lower is better) Translates to: GQTESIRGLMWP*LYRATRRVTTL Trigger: TAGCGTGGTCACCCGCCTCGTGGCTCTGTACAATCAGGGCCACATCAAACCTCGAATTGACTCAGTCTGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | CCTTCTCGAAGGGCCAGACTGAGTCAATTCGAGGTTTaGTGTGGCCCTGATTGTACAGAGCCACGAGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: PSRRARLSQFEV*CGPDCTEPRGG Trigger: CCCGCCTCGTGGCTCTGTACAATCAGGGCCACATCAAACCTCGAATTGACTCAGTCTGGCCCTTCGAGAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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| CDS TCA 72 bp | TTTCATTGCATCTGCCACCTTCTCGAAGGGCCAGACTaGGTCAATTCGAGGTTTGATGTGGCCCTGATTGTA | + |
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Preference number: 6 (lower is better) Translates to: FHCICHLLEGPD*VNSRFDVALIV Trigger: TACAATCAGGGCCACATCAAACCTCGAATTGACTCAGTCTGGCCCTTCGAGAAGGTGGCAGATGCAATGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040430.8 |
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