Pregenerated sensors for VASP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030403Ensembl transcript IDs: ENSMUST00000032561.9
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCCAGCGTGGGTGTGACCATGGCACCAGGAAGCCACACCCCACGTaGAATCTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTCTTGT | + |
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Preference number: 1 (lower is better) Translates to: SQRGCDHGTRKPHPT*NLPSGSWRGRTHSC Trigger: ACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCATGGTCACACCCACGCTGGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| 3UTR CCA 90 bp | GGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTaGCGGGGGAGAACGCATTCTTGTGTAACTCTTGGTCAAGTAGAG | + |
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Preference number: 1 (lower is better) Translates to: GTRKPHPTWNLPSGS*RGRTHSCVTLGQVE Trigger: CTCTACTTGACCAAGAGTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| 3UTR-3UTR CCA 90 bp | ACTGCAGATTTATTCAGCGAGGGCCCGTGTCCAAGAAGCTATGGTGTAGAAGTCTTCTTGTGTAACTCTTaGTCAAGTAGAGGCAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: TADLFSEGPCPRSYGVEVFLCNS*SSRGRE Trigger: TTCCCTGCCTCTACTTGACCAAGAGTTACACAAGAA...GACTTCTACACCATAGCTTCTTGGACACGGGCCCTCGCTGAATAAATCTGCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| 3UTR CCA 72 bp | GGGTGTGACCATGGCACCAGGAAGCCACACCCCACGTaGAATCTTCCAAGTGGGAGCTGGCGGGGGAGAACG | + |
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Preference number: 3 (lower is better) Translates to: GCDHGTRKPHPT*NLPSGSWRGRT Trigger: CGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCATGGTCACACCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| 3UTR CCA 72 bp | CACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTaGGAGCTGGCGGGGGAGAACGCATTCTTGTGTAAC | + |
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Preference number: 3 (lower is better) Translates to: HQEATPHVESSK*ELAGENAFLCN Trigger: GTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| 3UTR CCA 72 bp | AAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTaGCGGGGGAGAACGCATTCTTGTGTAACTCTTGGT | + |
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Preference number: 3 (lower is better) Translates to: KPHPTWNLPSGS*RGRTHSCVTLG Trigger: ACCAAGAGTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| 3UTR CCA 72 bp | GATGGTGAAGGGAAAGGACCAAAGAAAACAAAGGGGTaGGACCTCCTTATCCAATCAGCAGCCAGCGTGGGT | + |
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Preference number: 3 (lower is better) Translates to: DGEGKGPKKTKG*DLLIQSAASVG Trigger: ACCCACGCTGGCTGCTGATTGGATAAGGAGGTCCCACCCCTTTGTTTTCTTTGGTCCTTTCCCTTCACCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | CAATCAGCAGCCAGCGTGGGTGTGACCATGGCACCAGGAAGCCACACCCCACGTAGGAGGGCCCCCAGCTaGGGGAGCAGGTGGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: QSAASVGVTMAPGSHTPRRRAPS*GSRWAS Trigger: GGAGGCCCACCTGCTCCCCCAGCTGGGGGCCCTCCT...ACGTGGGGTGTGGCTTCCTGGTGCCATGGTCACACCCACGCTGGCTGCTGATTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR GCA 90 bp | TGGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGTGCAGGGGGTGGGGCTaGCCCTGCTCCATGACCTGC | + |
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Preference number: 4 (lower is better) Translates to: WHQEATPHVESSKWELAGCRGWG*PCSMTC Trigger: GCAGGTCATGGAGCAGGGGCAGCCCCACCCCCTGCA...CCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR TCA 90 bp | CCATGGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGCCTTGCTGCCGAAGTTaGGGCCCCAGACCTGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: PWHQEATPHVESSKWELAPCCRS*GPRPGG Trigger: CCCGCCAGGTCTGGGGCCTCAACTTCGGCAGCAAGG...CGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCATGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | TTCCTTCCCTCACTGCGGGGTTACTCGGTCCATCCCCAGCAGAGGAACCAGCCCACGCGGCTGAAGGCCTaGGGACCAGTGCCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: FLPSLRGYSVHPQQRNQPTRLKA*GPVPAG Trigger: CCCTGCTGGCACTGGTCCCCAGGCCTTCAGCCGCGT...GGGCTGGTTCCTCTGCTGGGGATGGACCGAGTAACCCCGCAGTGAGGGAAGGAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR GCA 90 bp | TGGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGACCCGGCGCTCCATATaGTCCGGCTGCCTTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: WHQEATPHVESSKWELAGTRRSI*SGCLFC Trigger: ACAGAAAAGGCAGCCGGAGCATATGGAGCGCCGGGT...CCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | TGGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGAGGCCTCTAGGGCGTTaGCCATGCCTGTTGCAAACT | + |
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Preference number: 4 (lower is better) Translates to: WHQEATPHVESSKWELAGRPLGR*PCLLQT Trigger: AGTTTGCAACAGGCATGGCCAACGCCCTAGAGGCCT...CCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | GGACCAAAGAAAACAAAGGGGTGGGACCTCCTTATCCAATCAGCAGCCAGCGTGGGGAGGTCCTGGAGGTaGAGGAGGGCCCCCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GPKKTKGWDLLIQSAASVGRSWR*RRAPSW Trigger: CCAGCTGGGGGCCCTCCTCCACCTCCAGGACCTCCC...CACGCTGGCTGCTGATTGGATAAGGAGGTCCCACCCCTTTGTTTTCTTTGGTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | CCATGGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGTGGCTGACTCGTCTTTaGGGGGCTTCTCCCCAACCT | + |
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Preference number: 4 (lower is better) Translates to: PWHQEATPHVESSKWELAWLTRL*GASPQP Trigger: AGGTTGGGGAGAAGCCCCCCAAAGACGAGTCAGCCA...CGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCATGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR TCA 90 bp | GGACCAAAGAAAACAAAGGGGTGGGACCTCCTTATCCAATCAGCAGCCAGCGTGTGCCCCAGATACCCCTaGGGAGGGCAGACCTGGGGG | + |
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Preference number: 4 (lower is better) Translates to: GPKKTKGWDLLIQSAASVCPRYP*GGQTWG Trigger: CCCCCAGGTCTGCCCTCCTCAGGGGTATCTGGGGCA...CACGCTGGCTGCTGATTGGATAAGGAGGTCCCACCCCTTTGTTTTCTTTGGTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR TCA 90 bp | ACCATGGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCTTGATAACCACCTGCTaGTCCGGCTGCATCTTGCGG | + |
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Preference number: 4 (lower is better) Translates to: TMAPGSHTPRGIFQVGAGLITTC*SGCILR Trigger: CCGCAAGATGCAGCCGGATCAGCAGGTGGTTATCAA...GCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCATGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | GGACCAAAGAAAACAAAGGGGTGGGACCTCCTTATCCAATCAGCAGCCAGCGTGGGGGAGGGACCATTCTaGGCAGACCAGGCAGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: GPKKTKGWDLLIQSAASVGEGPF*ADQAGG Trigger: ACCCCCTGCCTGGTCTGCCCAGAATGGTCCCTCCCC...CACGCTGGCTGCTGATTGGATAAGGAGGTCCCACCCCTTTGTTTTCTTTGGTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | AGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTTCTCCCCAACCTGTGTaGCTTTTCTTCTCCGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SHTPRGIFQVGAGGGERISPQPV*LFFSGP Trigger: TGGCCCGGAGAAGAAAAGCCACACAGGTTGGGGAGA...AATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR GCA 90 bp | AGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTTCTTCCAGAAGCTCCTaGTTCACCCTCTCCAAGTCG | + |
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Preference number: 4 (lower is better) Translates to: SHTPRGIFQVGAGGGERISSRSS*FTLSKS Trigger: CGACTTGGAGAGGGTGAAGCAGGAGCTTCTGGAAGA...AATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | CTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTCTTGTGTAACTCTTGGTCAAAGCTGGGGGAGCAGGTaGGCCTCCTGCATTGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: LPSGSWRGRTHSCVTLGQSWGSR*ASCIGD Trigger: GTCTCCAATGCAGGAGGCCCACCTGCTCCCCCAGCT...TTGACCAAGAGTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR TCA 90 bp | ACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTCTTGGCTTGCTCACTTTCCTaGGTTTGGCTCCAGCAATGG | + |
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Preference number: 4 (lower is better) Translates to: TPHVESSKWELAGENAFLACSLS*VWLQQW Trigger: CCATTGCTGGAGCCAAACTCAGGAAAGTGAGCAAGC...CAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR GCA 90 bp | TGGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGGGAGCCATCGCTTGTTaGTGTCATCATAAAGCATCA | + |
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Preference number: 4 (lower is better) Translates to: WHQEATPHVESSKWELAGGAIAC*CHHKAS Trigger: TGATGCTTTATGATGACAGCAACAAGCGATGGCTCC...CCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCA 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | CCATGGCACCAGGAAGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGCGCTTCCTCAGCTCCTaGACAAAGACTTCGATGATT | + |
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Preference number: 4 (lower is better) Translates to: PWHQEATPHVESSKWELARFLSS*TKTSMI Trigger: AATCATCGAAGTCTTTGTCCAGGAGCTGAGGAAGCG...CGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCTTCCTGGTGCCATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | ACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTCTTGTGTAACTTTGTTCCAGCTCCTCTaGGGAGGGACCATTCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: TWNLPSGSWRGRTHSCVTLFQLL*GGTILG Trigger: GCCCAGAATGGTCCCTCCCCAGAGGAGCTGGAACAA...AGTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR TCA 90 bp | CTATGGTGTAGAAGTCGGAGGACCTATTTTTCCTCTTCTCCCCCTCACTTCATCCGGGCATCTCGCCACTaGTGGAAGATGGGAGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LWCRSRRTYFSSSPPHFIRASRH*WKMGVA Trigger: GGCCACTCCCATCTTCCATCAGTGGCGAGATGCCCG...GATGAAGTGAGGGGGAGAAGAGGAAAAATAGGTCCTCCGACTTCTACACCATAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | ACTGCAGATTTATTCAGCGAGGGCCCGTGTCCAAGAAGCTATGGTGTAGAAGTCGTGGGCCTCCTGCATTaGAGACCCGGCGCTCCATAT | + |
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Preference number: 4 (lower is better) Translates to: TADLFSEGPCPRSYGVEVVGLLH*RPGAPY Trigger: ATATGGAGCGCCGGGTCTCCAATGCAGGAGGCCCAC...GACTTCTACACCATAGCTTCTTGGACACGGGCCCTCGCTGAATAAATCTGCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| 3UTR CAA 72 bp | TCTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTCTaGTGTAACTCTTGGTCAAGTAGAGGCAGGGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: SSKWELAGENAF*CNSWSSRGRES Trigger: GCTTTCCCTGCCTCTACTTGACCAAGAGTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR TCA 90 bp | ACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTCTTGTGTAACTAAGATGGGAGTGGCCTaGTTGTACTTGACACCCCGA | + |
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Preference number: 4 (lower is better) Translates to: TWNLPSGSWRGRTHSCVTKMGVA*LYLTPR Trigger: TCGGGGTGTCAAGTACAATCAGGCCACTCCCATCTT...AGTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR GCA 90 bp | GGACCAAAGAAAACAAAGGGGTGGGACCTCCTTATCCAATCAGCAGCCAGCGTGGTTGGCCATGCCTGTTaGAAACTGTATGGCGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: GPKKTKGWDLLIQSAASVVGHAC*KLYGVL Trigger: GAGGACGCCATACAGTTTGCAACAGGCATGGCCAAC...CACGCTGGCTGCTGATTGGATAAGGAGGTCCCACCCCTTTGTTTTCTTTGGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR GCA 90 bp | GGACCAAAGAAAACAAAGGGGTGGGACCTCCTTATCCAATCAGCAGCCAGCGTGCTAGGGCGTTGGCCATaGCTGTTGCAAACTGTATGG | + |
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Preference number: 4 (lower is better) Translates to: GPKKTKGWDLLIQSAASVLGRWP*LLQTVW Trigger: CCATACAGTTTGCAACAGGCATGGCCAACGCCCTAG...CACGCTGGCTGCTGATTGGATAAGGAGGTCCCACCCCTTTGTTTTCTTTGGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR TCA 90 bp | TTCCTTCCCTCACTGCGGGGTTACTCGGTCCATCCCCAGCAGAGGAACCAGCCCGGACAAAGACTTCGATaGTTTCCTCTTTCATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: FLPSLRGYSVHPQQRNQPGQRLR*FPLSFS Trigger: AGAAAATGAAAGAGGAAATCATCGAAGTCTTTGTCC...GGGCTGGTTCCTCTGCTGGGGATGGACCGAGTAACCCCGCAGTGAGGGAAGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CCA 90 bp | CTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTCTTGTGTAACTCTTGGTCAAGGACGACTTCATCCTTaGCAAGGTTGTGCTGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: LPSGSWRGRTHSCVTLGQGRLHP*QGCAVL Trigger: AAGAACAGCACAACCTTGCCAAGGATGAAGTCGTCC...TTGACCAAGAGTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR GCA 90 bp | CTATGGTGTAGAAGTCGGAGGACCTATTTTTCCTCTTCTCCCCCTCACTTCATCTCCTTGGCAAGGTTGTaGTGTTCTTCTCCCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: LWCRSRRTYFSSSPPHFISLARL*CSSPRV Trigger: GACCCTGGGAGAAGAACAGCACAACCTTGCCAAGGA...GATGAAGTGAGGGGGAGAAGAGGAAAAATAGGTCCTCCGACTTCTACACCATAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CAA 90 bp | AGCCACACCCCACGTGGAATCTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTGGTGGGCCTCCTGCATaGGAGACCCGGCGCTCCATA | + |
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Preference number: 5 (lower is better) Translates to: SHTPRGIFQVGAGGGERIGGPPA*ETRRSI Trigger: TATGGAGCGCCGGGTCTCCAATGCAGGAGGCCCACC...AATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAGATTCCACGTGGGGTGTGGCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CAA 90 bp | TTCCTTCCCTCACTGCGGGGTTACTCGGTCCATCCCCAGCAGAGGAACCAGCCCTGTATGGCGTCCTCCTaGCTGCCGAAGTTGAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: FLPSLRGYSVHPQQRNQPCMASS*LPKLRP Trigger: GGGCCTCAACTTCGGCAGCAAGGAGGACGCCATACA...GGGCTGGTTCCTCTGCTGGGGATGGACCGAGTAACCCCGCAGTGAGGGAAGGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CAA 90 bp | CTTCCAAGTGGGAGCTGGCGGGGGAGAACGCATTCTTGTGTAACTCTTGGTCAATCCTTGCTGCCGAAGTaGAGGCCCCAGACCTGGCGG | + |
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Preference number: 5 (lower is better) Translates to: LPSGSWRGRTHSCVTLGQSLLPK*RPQTWR Trigger: CCGCCAGGTCTGGGGCCTCAACTTCGGCAGCAAGGA...TTGACCAAGAGTTACACAAGAATGCGTTCTCCCCCGCCAGCTCCCACTTGGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS CCA 90 bp | AAGGTTGTGCTGTTCTTCTCCCAGGGTCTTCTCACAGGTTCACTCTaGGCAGGGAGTCGGGCCTCTGACTCCTCACTGGCTGACTCGTCT | + |
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Preference number: 5 (lower is better) Translates to: KVVLFFSQGLLTGSL*AGSRASDSSLADSS Trigger: AGACGAGTCAGCCAGTGAGGAGTCAGAGGCCCGACTCCCTGCCCAGAGTGAACCTGTGAGAAGACCCTGGGAGAAGAACAGCACAACCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CAA 90 bp | TTCCTTCCCTCACTGCGGGGTTACTCGGTCCATCCCCAGCAGAGGAACCAGCCCAGGACGACTTCATCCTaGGCAAGGTTGTGCTGTTCT | + |
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Preference number: 5 (lower is better) Translates to: FLPSLRGYSVHPQQRNQPRTTSS*ARLCCS Trigger: AGAACAGCACAACCTTGCCAAGGATGAAGTCGTCCT...GGGCTGGTTCCTCTGCTGGGGATGGACCGAGTAACCCCGCAGTGAGGGAAGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CAA 90 bp | AGTGAATCCAGAACAAGAGAAGGTGAGACCCCTCCTTCCTTCCCTCACTGCGGGCGGCTGCCTTTTCTGTaGTTCCAGCTCCTCTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: SESRTREGETPPSFPHCGRLPFL*FQLLWG Trigger: TCCCCAGAGGAGCTGGAACAACAGAAAAGGCAGCCG...CCCGCAGTGAGGGAAGGAAGGAGGGGTCTCACCTTCTCTTGTTCTGGATTCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CAA 90 bp | AGTGAATCCAGAACAAGAGAAGGTGAGACCCCTCCTTCCTTCCCTCACTGCGGGCGTTGGCCATGCCTGTaGCAAACTGTATGGCGTCCT | + |
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Preference number: 5 (lower is better) Translates to: SESRTREGETPPSFPHCGRWPCL*QTVWRP Trigger: AGGACGCCATACAGTTTGCAACAGGCATGGCCAACG...CCCGCAGTGAGGGAAGGAAGGAGGGGTCTCACCTTCTCTTGTTCTGGATTCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS-3UTR CAA 90 bp | CTATGGTGTAGAAGTCGGAGGACCTATTTTTCCTCTTCTCCCCCTCACTTCATCCTCACTTTCCTGAGTTaGGCTCCAGCAATGGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: LWCRSRRTYFSSSPPHFILTFLS*APAMAA Trigger: TGCTGCCATTGCTGGAGCCAAACTCAGGAAAGTGAG...GATGAAGTGAGGGGGAGAAGAGGAAAAATAGGTCCTCCGACTTCTACACCATAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS CAA 72 bp | GGGGGAGGCCCACCTCCTTCCAAGGCCTCTAGGGCGTaGGCCATGCCTGTTGCAAACTGTATGGCGTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: GGGPPPSKASRA*AMPVANCMASS Trigger: GGAGGACGCCATACAGTTTGCAACAGGCATGGCCAACGCCCTAGAGGCCTTGGAAGGAGGTGGGCCTCCCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS CCA 72 bp | GGGGAGGCCCACCTCCTTCCAAGGCCTCTAGGGCGTTaGCCATGCCTGTTGCAAACTGTATGGCGTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: GEAHLLPRPLGR*PCLLQTVWRPP Trigger: AGGAGGACGCCATACAGTTTGCAACAGGCATGGCCAACGCCCTAGAGGCCTTGGAAGGAGGTGGGCCTCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS CCA 72 bp | ATGCTCCGGCTGCCTTTTCTGTTGTTCCAGCTCCTCTaGGGAGGGACCATTCTGGGCAGACCAGGCAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: MLRLPFLLFQLL*GGTILGRPGRG Trigger: CCCCCTGCCTGGTCTGCCCAGAATGGTCCCTCCCCAGAGGAGCTGGAACAACAGAAAAGGCAGCCGGAGCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS GCA 72 bp | GCCCACCTCCTTCCAAGGCCTCTAGGGCGTTGGCCATaGCTGTTGCAAACTGTATGGCGTCCTCCTTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: AHLLPRPLGRWP*LLQTVWRPPCC Trigger: GCAGCAAGGAGGACGCCATACAGTTTGCAACAGGCATGGCCAACGCCCTAGAGGCCTTGGAAGGAGGTGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS GCA 72 bp | GGTGGGCCTCCTGCATTGGAGACCCGGCGCTCCATATaGTCCGGCTGCCTTTTCTGTTGTTCCAGCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: GGPPALETRRSI*SGCLFCCSSSS Trigger: AGAGGAGCTGGAACAACAGAAAAGGCAGCCGGAGCATATGGAGCGCCGGGTCTCCAATGCAGGAGGCCCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS CAA 72 bp | TTGGCCATGCCTGTTGCAAACTGTATGGCGTCCTCCTaGCTGCCGAAGTTGAGGCCCCAGACCTGGCGGGCA | + |
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Preference number: 6 (lower is better) Translates to: LAMPVANCMASS*LPKLRPQTWRA Trigger: TGCCCGCCAGGTCTGGGGCCTCAACTTCGGCAGCAAGGAGGACGCCATACAGTTTGCAACAGGCATGGCCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS CCA 72 bp | CTGTTCTTCTCCCAGGGTCTTCTCACAGGTTCACTCTaGGCAGGGAGTCGGGCCTCTGACTCCTCACTGGCT | + |
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Preference number: 6 (lower is better) Translates to: LFFSQGLLTGSL*AGSRASDSSLA Trigger: AGCCAGTGAGGAGTCAGAGGCCCGACTCCCTGCCCAGAGTGAACCTGTGAGAAGACCCTGGGAGAAGAACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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| CDS CAA 72 bp | CTCCTTCCAAGGCCTCTAGGGCGTTGGCCATGCCTGTaGCAAACTGTATGGCGTCCTCCTTGCTGCCGAAGT | + |
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Preference number: 6 (lower is better) Translates to: LLPRPLGRWPCL*QTVWRPPCCRS Trigger: ACTTCGGCAGCAAGGAGGACGCCATACAGTTTGCAACAGGCATGGCCAACGCCCTAGAGGCCTTGGAAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032561.9 |
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