Pregenerated sensors for VASH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021256Ensembl transcript IDs: ENSMUST00000021681.4
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAATaGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCC | + |
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Preference number: 3 (lower is better) Translates to: LASWEGKSLGAE*QGLLLASHPKS Trigger: GGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCCGCATGTCTCGGGCATaGCGCTCCAGCTCCTTGCGG | + |
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Preference number: 4 (lower is better) Translates to: HLGLNGKASFWPPTPSPPRMSRA*RSSSLR Trigger: CCGCAAGGAGCTGGAGCGTCATGCCCGAGACATGCG...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR GCA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCCACTGCGGCTGTTCCTaGGATGGGGGCTGGACTGGG | + |
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Preference number: 4 (lower is better) Translates to: HLGLNGKASFWPPTPSPPHCGCS*DGGWTG Trigger: CCCAGTCCAGCCCCCATCGCAGGAACAGCCGCAGTG...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGCCAGCACGAGCTCACTaGGCGTGCGGAAGGCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQPARAH*ACGRRA Trigger: CGCCCGCCTTCCGCACGCTCAGTGAGCTCGTGCTGG...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCTGTACTGCAGCTCCCTaGTGTAGCGCTGCACGGCTT | + |
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Preference number: 4 (lower is better) Translates to: HLGLNGKASFWPPTPSPPCTAAP*CSAARL Trigger: AAGCCGTGCAGCGCTACATCAGGGAGCTGCAGTACA...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCGGATCTGGTACCCACTaGGGTCTGGCATGGCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: HLGLNGKASFWPPTPSPPGSGTH*GLAWLW Trigger: CCAAAGCCATGCCAGACCTCAGTGGGTACCAGATCC...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAACAGCAGCAGTGGTGGTaGCGGCTGCGTTCGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAEQQQWW*RLRSGR Trigger: CCTCCCCGAACGCAGCCGCCACCACCACTGCTGCTG...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGTCCTGCGATGGGGGCTaGACTGGGCCCTCTGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQSCDGG*TGPSVG Trigger: CCCCACAGAGGGCCCAGTCCAGCCCCCATCGCAGGA...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGCGGCTGTTCCTGCGATaGGGGCTGGACTGGGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQRLFLR*GLDWAL Trigger: GAGGGCCCAGTCCAGCCCCCATCGCAGGAACAGCCG...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGCGATGGGGGCTGGACTaGGCCCTCTGTGGGGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQRWGLD*ALCGEE Trigger: TTCCTCCCCACAGAGGGCCCAGTCCAGCCCCCATCG...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAGGGCTTCTTCTCCCCTaGAGGCCGTCTCTCACTGCG | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAEGLLLP*RPSLTA Trigger: CGCAGTGAGAGACGGCCTTCAGGGGAGAAGAAGCCC...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR GCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGGACGCTCCAGCTCCTTaGGGAAGTCTTCCCGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQDAPAP*GSLPAP Trigger: TGGGGCGGGAAGACTTCCGCAAGGAGCTGGAGCGTC...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAACGTTTAGTGCCAGAGTaGGGGGCAGCAGCGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAERLVPE*GAAAAA Trigger: TGCTGCCGCTGCTGCCCCCCACTCTGGCACTAAACG...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCAATTGTGTCCCTGTGTaGTTGTACTGCAGCTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: HLGLNGKASFWPPTPSPPNCVPV*LYCSSL Trigger: CAGGGAGCTGCAGTACAATCACACAGGGACACAATT...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR GCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAAAGGCCGTCTCTCACTaGGGCTGTTCCTGCGATGGG | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAEKAVSH*GCSCDG Trigger: CCCATCGCAGGAACAGCCGCAGTGAGAGACGGCCTT...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCTTCTCTCCATCTGGGTaGATCTTGGCCACATGCTTC | + |
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Preference number: 4 (lower is better) Translates to: HLGLNGKASFWPPTPSPPFSPSG*ILATCF Trigger: GAAGCATGTGGCCAAGATCCACCCAGATGGAGAGAA...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAATCTTCCGGTCCTTGGTaGGAGAAGGAGGGCCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAESSGPW*EKEGLS Trigger: GGACAGGCCCTCCTTCTCCCACCAAGGACCGGAAGA...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGCCTTCTTCCGGTCCTTaGTGGGAGAAGGAGGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQPSSGP*WEKEGL Trigger: CAGGCCCTCCTTCTCCCACCAAGGACCGGAAGAAGG...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCTGGGCATACTGTTGGTaGGGTAAATTCCCAGGATCA | + |
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Preference number: 4 (lower is better) Translates to: HLGLNGKASFWPPTPSPPWAYCW*GKFPGS Trigger: TGATCCTGGGAATTTACCTCACCAACAGTATGCCCA...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCGCGGAAGTAGTTCCCTaGGAAATAGGTCTTGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: HLGLNGKASFWPPTPSPPAEVVP*EIGLEA Trigger: AGCTTCAAGACCTATTTCTCAGGGAACTACTTCCGC...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGGGTGGCCTCATCCACTaGCAGTCCACCTCGGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQGGLIH*QSTSVD Trigger: ATCAACCGAGGTGGACTGCCAGTGGATGAGGCCACC...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAGGTCTGGCATGGCTTTaGGCTCTGCGGGCTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAEGLAWL*ALRASS Trigger: AGAAGAAGCCCGCAGAGCCCAAAGCCATGCCAGACC...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAGTACCCACTGAGGTCTaGCATGGCTTTGGGCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAEVPTEV*HGFGLC Trigger: GCAGAGCCCAAAGCCATGCCAGACCTCAGTGGGTAC...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAACATCCTTTCCCAGGTaGCCTCATCCACTGGCAGTC | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAETSFPR*PHPLAV Trigger: GACTGCCAGTGGATGAGGCCACCTGGGAAAGGATGT...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGCTTTGGTCATTTCCTTaGCCAGGTCCATCAGCCCCG | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQLWSFP*PGPSAP Trigger: CGGGGCTGATGGACCTGGCCAAGGAAATGACCAAAG...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAGGACTGGGCCCTCTGTaGGGAGGAAACATCCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAEGLGPL*GGNILL Trigger: AAGAAGGATGTTTCCTCCCCACAGAGGGCCCAGTCC...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR TCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGCAGCTTCCAGGCATTTaGTTGGCAGAGCCTCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQQLPGI*LAEPLW Trigger: CCAAAGAGGCTCTGCCAATCAAATGCCTGGAAGCTG...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR GCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAATGGATCTTGGCCACATaGTTCCACATCCTTTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAEWILAT*FHILSQ Trigger: CTGGGAAAGGATGTGGAAGCATGTGGCCAAGATCCA...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR GCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAACATCCAGCACCGAGTaGTTCCATTCAATCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAETSSTE*FHSICS Trigger: GGAACAGATTGAATGGAAGCACTCGGTGCTGGATGT...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAGAAAGTAGGCACACTTaGTATGGGAATCTTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: WPKVRGLASWEGKSLGAEESRHT*YGNLGQ Trigger: CTGCCCAAGATTCCCATACCAAGTGTGCCTACTTTC...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CCA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGTTCCAGGCATTTGATTaGCAGAGCCTCTTTGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: HPITSPCLDEVVSFLGLQFQAFD*QSLFGH Trigger: ATGACCAAAGAGGCTCTGCCAATCAAATGCCTGGAA...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS GCA 90 bp | CTTTGGGCTCTGCGGGCTTCTTCTCCCCTGAAGGCCGTCTCTCACTaGGGCTGTTCCTGCGATGGGGGCTGGACTGGGCCCTCTGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: LWALRASSPLKAVSH*GCSCDGGWTGPSVG Trigger: CCCCACAGAGGGCCCAGTCCAGCCCCCATCGCAGGAACAGCCGCAGTGAGAGACGGCCTTCAGGGGAGAAGAAGCCCGCAGAGCCCAAAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS TCA 90 bp | GCCAGCAGCGGCCGTAGGCCGCTTCGTAGTCCAGCACGAGCTCACTaGGCGTGCGGAAGGCGGGCGGTTTGTACATCAGGTCCTCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: ASSGRRPLRSPARAH*ACGRRAVCTSGPPF Trigger: GAAGGGAGGACCTGATGTACAAACCGCCCGCCTTCCGCACGCTCAGTGAGCTCGTGCTGGACTACGAAGCGGCCTACGGCCGCTGCTGGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS TCA 90 bp | GGAGGGCCTGTCCCCTTGCCAATCTTGAGCCGCATGTCTCGGGCATaGCGCTCCAGCTCCTTGCGGAAGTCTTCCCGCCCCAGCCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GGPVPLPILSRMSRA*RSSSLRKSSRPSLS Trigger: GGAGAGGCTGGGGCGGGAAGACTTCCGCAAGGAGCTGGAGCGTCATGCCCGAGACATGCGGCTCAAGATTGGCAAGGGGACAGGCCCTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 90 bp | TGTGCTGAGGCCCCTTCGGTGGTCTCCAAACGTTTAGTGCCAGAGTaGGGGGCAGCAGCGGCAGCAGCAGCAGCAGCAGTGGTGGTGGCG | + |
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Preference number: 5 (lower is better) Translates to: CAEAPSVVSKRLVPE*GAAAAAAAAAVVVA Trigger: CGCCACCACCACTGCTGCTGCTGCTGCTGCCGCTGCTGCCCCCCACTCTGGCACTAAACGTTTGGAGACCACCGAAGGGGCCTCAGCACA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 90 bp | CTCACTGCGGCTGTTCCTGCGATGGGGGCTGGACTGGGCCCTCTGTaGGGAGGAAACATCCTTCTTCCGGTCCTTGGTGGGAGAAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LTAAVPAMGAGLGPL*GGNILLPVLGGRRR Trigger: CCTCCTTCTCCCACCAAGGACCGGAAGAAGGATGTTTCCTCCCCACAGAGGGCCCAGTCCAGCCCCCATCGCAGGAACAGCCGCAGTGAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 90 bp | TCGGTGGCCCCACGGATGCGCAGGGCCACCTTCTCTCCATCTGGGTaGATCTTGGCCACATGCTTCCACATCCTTTCCCAGGTGGCCTCA | + |
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Preference number: 5 (lower is better) Translates to: SVAPRMRRATFSPSG*ILATCFHILSQVAS Trigger: TGAGGCCACCTGGGAAAGGATGTGGAAGCATGTGGCCAAGATCCACCCAGATGGAGAGAAGGTGGCCCTGCGCATCCGTGGGGCCACCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 90 bp | CCCCACGGATGCGCAGGGCCACCTTCTCTCCATCTGGGTGGATCTTaGCCACATGCTTCCACATCCTTTCCCAGGTGGCCTCATCCACTG | + |
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Preference number: 5 (lower is better) Translates to: PHGCAGPPSLHLGGS*PHASTSFPRWPHPL Trigger: CAGTGGATGAGGCCACCTGGGAAAGGATGTGGAAGCATGTGGCCAAGATCCACCCAGATGGAGAGAAGGTGGCCCTGCGCATCCGTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CAA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCCCATCTGGGTGGATCTaGGCCACATGCTTCCACATC | + |
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Preference number: 5 (lower is better) Translates to: HLGLNGKASFWPPTPSPPPSGWI*ATCFHI Trigger: GATGTGGAAGCATGTGGCCAAGATCCACCCAGATGG...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS GCA 90 bp | ATGCGCAGGGCCACCTTCTCTCCATCTGGGTGGATCTTGGCCACATaGTTCCACATCCTTTCCCAGGTGGCCTCATCCACTGGCAGTCCA | + |
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Preference number: 5 (lower is better) Translates to: MRRATFSPSGWILAT*FHILSQVASSTGSP Trigger: TGGACTGCCAGTGGATGAGGCCACCTGGGAAAGGATGTGGAAGCATGTGGCCAAGATCCACCCAGATGGAGAGAAGGTGGCCCTGCGCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS GCA 90 bp | TTGCGGAAGTCTTCCCGCCCCAGCCTCTCCACATCCAGCACCGAGTaGTTCCATTCAATCTGTTCCACACTGTGCGGGTCGTGGGACACA | + |
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Preference number: 5 (lower is better) Translates to: LRKSSRPSLSTSSTE*FHSICSTLCGSWDT Trigger: TGTGTCCCACGACCCGCACAGTGTGGAACAGATTGAATGGAAGCACTCGGTGCTGGATGTGGAGAGGCTGGGGCGGGAAGACTTCCGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CAA 90 bp | CACTTGGGGCTGAATGGCAAGGCCTCCTTCTGGCCTCCCACCCCAAGTCCACCCACAGCTTCCAGGCATTaGATTGGCAGAGCCTCTTTG | + |
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Preference number: 5 (lower is better) Translates to: HLGLNGKASFWPPTPSPPTASRH*IGRASL Trigger: CAAAGAGGCTCTGCCAATCAAATGCCTGGAAGCTGT...GGGTGGACTTGGGGTGGGAGGCCAGAAGGAGGCCTTGCCATTCAGCCCCAAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CAA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAACGGAAGGCGGGCGGTTaGTACATCAGGTCCTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: WPKVRGLASWEGKSLGAERKAGG*YIRSSL Trigger: AAGGGAGGACCTGATGTACAAACCGCCCGCCTTCCG...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CAA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGTCCTTCTTCCGGTCCTaGGTGGGAGAAGGAGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: HPITSPCLDEVVSFLGLQSFFRS*VGEGGP Trigger: AGGCCCTCCTTCTCCCACCAAGGACCGGAAGAAGGA...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CAA 90 bp | TGGCCCAAAGTTAGGGGCTTGGCTTCATGGGAGGGCAAGTCACTTGGGGCTGAAAGGTCTGGCATGGCTTaGGGCTCTGCGGGCTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: WPKVRGLASWEGKSLGAERSGMA*GSAGFF Trigger: GAAGAAGCCCGCAGAGCCCAAAGCCATGCCAGACCT...TTCAGCCCCAAGTGACTTGCCCTCCCATGAAGCCAAGCCCCTAACTTTGGGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS-3UTR CAA 90 bp | CACCCCATCACTAGCCCCTGCCTGGATGAAGTAGTTTCTTTCCTGGGCCTCCAGTCTTTGGTCATTTCCTaGGCCAGGTCCATCAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: HPITSPCLDEVVSFLGLQSLVIS*ARSISP Trigger: GGGGCTGATGGACCTGGCCAAGGAAATGACCAAAGA...CTGGAGGCCCAGGAAAGAAACTACTTCATCCAGGCAGGGGCTAGTGATGGGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 72 bp | GGGCAGCAGCGGCAGCAGCAGCAGCAGCAGTGGTGGTaGCGGCTGCGTTCGGGGAGGCACTGCTGCTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: GQQRQQQQQQWW*RLRSGRHCCCH Trigger: GTGGCAGCAGCAGTGCCTCCCCGAACGCAGCCGCCACCACCACTGCTGCTGCTGCTGCTGCCGCTGCTGCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS GCA 72 bp | CTGCGGGCTTCTTCTCCCCTGAAGGCCGTCTCTCACTaGGGCTGTTCCTGCGATGGGGGCTGGACTGGGCCC | + |
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Preference number: 6 (lower is better) Translates to: LRASSPLKAVSH*GCSCDGGWTGP Trigger: GGGCCCAGTCCAGCCCCCATCGCAGGAACAGCCGCAGTGAGAGACGGCCTTCAGGGGAGAAGAAGCCCGCAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS TCA 72 bp | GGCCGTAGGCCGCTTCGTAGTCCAGCACGAGCTCACTaGGCGTGCGGAAGGCGGGCGGTTTGTACATCAGGT | + |
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Preference number: 6 (lower is better) Translates to: GRRPLRSPARAH*ACGRRAVCTSG Trigger: ACCTGATGTACAAACCGCCCGCCTTCCGCACGCTCAGTGAGCTCGTGCTGGACTACGAAGCGGCCTACGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS TCA 72 bp | GTCCCCTTGCCAATCTTGAGCCGCATGTCTCGGGCATaGCGCTCCAGCTCCTTGCGGAAGTCTTCCCGCCCC | + |
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Preference number: 6 (lower is better) Translates to: VPLPILSRMSRA*RSSSLRKSSRP Trigger: GGGGCGGGAAGACTTCCGCAAGGAGCTGGAGCGTCATGCCCGAGACATGCGGCTCAAGATTGGCAAGGGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 72 bp | AGGGACGGGCGTCGTCGGCTGGAAAGTAGGCACACTTaGTATGGGAATCTTGGGCAGGTCGGTGGCCCCACG | + |
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Preference number: 6 (lower is better) Translates to: RDGRRRLESRHT*YGNLGQVGGPT Trigger: CGTGGGGCCACCGACCTGCCCAAGATTCCCATACCAAGTGTGCCTACTTTCCAGCCGACGACGCCCGTCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 72 bp | GCTGTTCCTGCGATGGGGGCTGGACTGGGCCCTCTGTaGGGAGGAAACATCCTTCTTCCGGTCCTTGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: AVPAMGAGLGPL*GGNILLPVLGG Trigger: CCCACCAAGGACCGGAAGAAGGATGTTTCCTCCCCACAGAGGGCCCAGTCCAGCCCCCATCGCAGGAACAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 72 bp | GCCGTCTCTCACTGCGGCTGTTCCTGCGATGGGGGCTaGACTGGGCCCTCTGTGGGGAGGAAACATCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: AVSHCGCSCDGG*TGPSVGRKHPS Trigger: AGAAGGATGTTTCCTCCCCACAGAGGGCCCAGTCCAGCCCCCATCGCAGGAACAGCCGCAGTGAGAGACGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CAA 90 bp | CTGGACTGGGCCCTCTGTGGGGAGGAAACATCCTTCTTCCGGTCCTaGGTGGGAGAAGGAGGGCCTGTCCCCTTGCCAATCTTGAGCCGC | + |
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Preference number: 6 (lower is better) Translates to: LDWALCGEETSFFRS*VGEGGPVPLPILSR Trigger: GCGGCTCAAGATTGGCAAGGGGACAGGCCCTCCTTCTCCCACCAAGGACCGGAAGAAGGATGTTTCCTCCCCACAGAGGGCCCAGTCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS TCA 72 bp | TGGTGGGAGAAGGAGGGCCTGTCCCCTTGCCAATCTTaGGCCGCATGTCTCGGGCATGACGCTCCAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: WWEKEGLSPCQS*AACLGHDAPAP Trigger: AGGAGCTGGAGCGTCATGCCCGAGACATGCGGCTCAAGATTGGCAAGGGGACAGGCCCTCCTTCTCCCACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 72 bp | ACGGCTTCCAGGCGCTCAGGGACGGGCGTCGTCGGCTaGAAAGTAGGCACACTTGGTATGGGAATCTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: TASRRSGTGVVG*KVGTLGMGILG Trigger: GCCCAAGATTCCCATACCAAGTGTGCCTACTTTCCAGCCGACGACGCCCGTCCCTGAGCGCCTGGAAGCCGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CAA 72 bp | AGCACGAGCTCACTGAGCGTGCGGAAGGCGGGCGGTTaGTACATCAGGTCCTCCCTTCGGCTCATACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: STSSLSVRKAGG*YIRSSLRLIPR Trigger: CCTGGGTATGAGCCGAAGGGAGGACCTGATGTACAAACCGCCCGCCTTCCGCACGCTCAGTGAGCTCGTGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CAA 72 bp | ACCCGGATCTGGTACCCACTGAGGTCTGGCATGGCTTaGGGCTCTGCGGGCTTCTTCTCCCCTGAAGGCCGT | + |
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Preference number: 6 (lower is better) Translates to: TRIWYPLRSGMA*GSAGFFSPEGR Trigger: ACGGCCTTCAGGGGAGAAGAAGCCCGCAGAGCCCAAAGCCATGCCAGACCTCAGTGGGTACCAGATCCGGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CAA 90 bp | GCCCCACGGATGCGCAGGGCCACCTTCTCTCCATCTGGGTGGATCTaGGCCACATGCTTCCACATCCTTTCCCAGGTGGCCTCATCCACT | + |
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Preference number: 6 (lower is better) Translates to: APRMRRATFSPSGWI*ATCFHILSQVASST Trigger: AGTGGATGAGGCCACCTGGGAAAGGATGTGGAAGCATGTGGCCAAGATCCACCCAGATGGAGAGAAGGTGGCCCTGCGCATCCGTGGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS GCA 72 bp | TCTTCCCGCCCCAGCCTCTCCACATCCAGCACCGAGTaGTTCCATTCAATCTGTTCCACACTGTGCGGGTCG | + |
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Preference number: 6 (lower is better) Translates to: SSRPSLSTSSTE*FHSICSTLCGS Trigger: CGACCCGCACAGTGTGGAACAGATTGAATGGAAGCACTCGGTGCTGGATGTGGAGAGGCTGGGGCGGGAAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 72 bp | CCACGGATGCGCAGGGCCACCTTCTCTCCATCTGGGTaGATCTTGGCCACATGCTTCCACATCCTTTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: PRMRRATFSPSG*ILATCFHILSQ Trigger: CTGGGAAAGGATGTGGAAGCATGTGGCCAAGATCCACCCAGATGGAGAGAAGGTGGCCCTGCGCATCCGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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| CDS CCA 72 bp | CCCTCTGTGGGGAGGAAACATCCTTCTTCCGGTCCTTaGTGGGAGAAGGAGGGCCTGTCCCCTTGCCAATCT | + |
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Preference number: 6 (lower is better) Translates to: PSVGRKHPSSGP*WEKEGLSPCQS Trigger: AGATTGGCAAGGGGACAGGCCCTCCTTCTCCCACCAAGGACCGGAAGAAGGATGTTTCCTCCCCACAGAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021681.4 |
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