RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VAPA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024091

Ensembl transcript IDs: ENSMUST00000024897.10, ENSMUST00000232686.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGAGTTTCATACAAGGTAACAGTACACATTATACAGCCCACTGGGTaGGTGGCAGCGGCGCACGCCTTTAATCCTGGTGCTCAGAAGGCA +
Preference number: 1 (lower is better)
Translates to: RVSYKVTVHIIQPTG*VAAAHAFNPGAQKA
Trigger: TGCCTTCTGAGCACCAGGATTAAAGGCGTGCGCCGCTGCCACCCACCCAGTGGGCTGTATAATGTGTACTGTTACCTTGTATGAAACTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR CCA 90 bp TGTAAAATGCCTGCCAAAATACAATGCAATTTACAGCCCGCACGGTaGACACTGCAGCCTGAACACGAATGCACGCATATCAGAGAAGAC +
Preference number: 1 (lower is better)
Translates to: CKMPAKIQCNLQPAR*TLQPEHECTHIRED
Trigger: GTCTTCTCTGATATGCGTGCATTCGTGTTCAGGCTGCAGTGTCCACCGTGCGGGCTGTAAATTGCATTGTATTTTGGCAGGCATTTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR GCA 90 bp AAACCAAAGCAAACAAACAAATCAATTAAGTCCAATAAAGTTCACTaGAGAGTGAACATGCTGGCTCATCCCACTCTGACCCTACGCCCA +
Preference number: 1 (lower is better)
Translates to: KPKQTNKSIKSNKVH*RVNMLAHPTLTLRP
Trigger: TGGGCGTAGGGTCAGAGTGGGATGAGCCAGCATGTTCACTCTGCAGTGAACTTTATTGGACTTAATTGATTTGTTTGTTTGCTTTGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR GCA 90 bp ACTGAAGGAACTGGGTTCTTATTTCAGCTGTTTACCAAATTCAAATaGCTTACTGTTTACAGCTACAATCAGGAAGCTCTAAGTGTCTCT +
Preference number: 1 (lower is better)
Translates to: TEGTGFLFQLFTKFK*LTVYSYNQEALSVS
Trigger: AGAGACACTTAGAGCTTCCTGATTGTAGCTGTAAACAGTAAGGCATTTGAATTTGGTAAACAGCTGAAATAAGAACCCAGTTCCTTCAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR CCA 90 bp CCCTTCCTGCACAGTAAGCCCTATGACCCAGTCTCTGCCCCAACAGTGTCCAATATACAGCCCACTGGGTaGGTGGCAGCGGCGCACGCC +
Preference number: 2 (lower is better)
Translates to: PFLHSKPYDPVSAPTVSNIQPTG*VAAAHA
Trigger: GGCGTGCGCCGCTGCCACCCACCCAGTGGGCTGTAT...ATTGGACACTGTTGGGGCAGAGACTGGGTCATAGGGCTTACTGTGCAGGAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR TCA 90 bp ATGCCTGCCAAAATACAATGCAATTTACAGCCCGCACGGTGGACACTGCAGCCTAAGTTCACTGCAGAGTaGACATGCTGGCTCATCCCA +
Preference number: 2 (lower is better)
Translates to: MPAKIQCNLQPARWTLQPKFTAE*TCWLIP
Trigger: TGGGATGAGCCAGCATGTTCACTCTGCAGTGAACTT...AGGCTGCAGTGTCCACCGTGCGGGCTGTAAATTGCATTGTATTTTGGCAGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR TCA 90 bp AAATGTAAGATTTTTCTCATGCACTTTCAGCTTTGGGGAGGGAGGGCAGTACTGAGGCAGGCGGATTTCTaGGTTCAGGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: KCKIFLMHFQLWGGRAVLRQADF*VQGQPG
Trigger: ACCAGGCTGGCCCTGAACTCAGAAATCCGCCTGCCT...CAGTACTGCCCTCCCTCCCCAAAGCTGAAAGTGCATGAGAAAAATCTTACATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR GCA 90 bp GTAACAGTACACATTATACAGCCCACTGGGTGGGTGGCAGCGGCGCACGCCTTTACTCAGTCAACAAACTaGCTCACAAGGGATAAGAAA +
Preference number: 2 (lower is better)
Translates to: VTVHIIQPTGWVAAAHAFTQSTN*LTRDKK
Trigger: TTTCTTATCCCTTGTGAGGCAGTTTGTTGACTGAGT...AAAGGCGTGCGCCGCTGCCACCCACCCAGTGGGCTGTATAATGTGTACTGTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR TCA 90 bp ATGCCTGCCAAAATACAATGCAATTTACAGCCCGCACGGTGGACACTGCAGCCTCCAACCCAGCACAAATaGCATGACAGACACAAACAA +
Preference number: 2 (lower is better)
Translates to: MPAKIQCNLQPARWTLQPPTQHK*HDRHKQ
Trigger: TTGTTTGTGTCTGTCATGTCATTTGTGCTGGGTTGG...AGGCTGCAGTGTCCACCGTGCGGGCTGTAAATTGCATTGTATTTTGGCAGGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR TCA 90 bp AAATGTAAGATTTTTCTCATGCACTTTCAGCTTTGGGGAGGGAGGGCAGTACTGCACACACAAAACTCATaGGGATCACAGCACCTTTAC +
Preference number: 2 (lower is better)
Translates to: KCKIFLMHFQLWGGRAVLHTQNS*GSQHLY
Trigger: GTAAAGGTGCTGTGATCCTCATGAGTTTTGTGTGTG...CAGTACTGCCCTCCCTCCCCAAAGCTGAAAGTGCATGAGAAAAATCTTACATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR GCA 90 bp AAATGTAAGATTTTTCTCATGCACTTTCAGCTTTGGGGAGGGAGGGCAGTACTGAGTGAGTTCCAGGACTaGCAAGGCTACAAAGAGAAA +
Preference number: 2 (lower is better)
Translates to: KCKIFLMHFQLWGGRAVLSEFQD*QGYKEK
Trigger: TTTCTCTTTGTAGCCTTGGCAGTCCTGGAACTCACT...CAGTACTGCCCTCCCTCCCCAAAGCTGAAAGTGCATGAGAAAAATCTTACATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR TCA 90 bp AAATGTAAGATTTTTCTCATGCACTTTCAGCTTTGGGGAGGGAGGGCAGTACTGCCAGCACAAATGACATaGCAGACACAAACAAGCTAT +
Preference number: 2 (lower is better)
Translates to: KCKIFLMHFQLWGGRAVLPAQMT*QTQTSY
Trigger: ATAGCTTGTTTGTGTCTGTCATGTCATTTGTGCTGG...CAGTACTGCCCTCCCTCCCCAAAGCTGAAAGTGCATGAGAAAAATCTTACATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR TCA 72 bp ATCCTGGTGCTCAGAAGGCAGAGGCAGGCGGATTTCTaGGTTCAGGGCCAGCCTGGTCTACAGAGTGAGTTC +
Preference number: 3 (lower is better)
Translates to: ILVLRRQRQADF*VQGQPGLQSEF
Trigger: GAACTCACTCTGTAGACCAGGCTGGCCCTGAACTCAGAAATCCGCCTGCCTCTGCCTTCTGAGCACCAGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR CCA 72 bp TACAAGGTAACAGTACACATTATACAGCCCACTGGGTaGGTGGCAGCGGCGCACGCCTTTAATCCTGGTGCT +
Preference number: 3 (lower is better)
Translates to: YKVTVHIIQPTG*VAAAHAFNPGA
Trigger: AGCACCAGGATTAAAGGCGTGCGCCGCTGCCACCCACCCAGTGGGCTGTATAATGTGTACTGTTACCTTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR TCA 72 bp GGATTTCTGAGTTCAGGGCCAGCCTGGTCTACAGAGTaGGTTCCAGGACTGCCAAGGCTACAAAGAGAAAAC +
Preference number: 3 (lower is better)
Translates to: GFLSSGPAWSTE*VPGLPRLQREN
Trigger: GTTTTCTCTTTGTAGCCTTGGCAGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCCTGAACTCAGAAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR CCA 72 bp CCTGCCAAAATACAATGCAATTTACAGCCCGCACGGTaGACACTGCAGCCTGAACACGAATGCACGCATATC +
Preference number: 3 (lower is better)
Translates to: PAKIQCNLQPAR*TLQPEHECTHI
Trigger: GATATGCGTGCATTCGTGTTCAGGCTGCAGTGTCCACCGTGCGGGCTGTAAATTGCATTGTATTTTGGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR TCA 72 bp CACTCTGACCCTACGCCCAACCCAGCACAAATGACATaGCAGACACAAACAAGCTATCGAGCAAGAATCTGT +
Preference number: 3 (lower is better)
Translates to: HSDPTPNPAQMT*QTQTSYRARIC
Trigger: ACAGATTCTTGCTCGATAGCTTGTTTGTGTCTGTCATGTCATTTGTGCTGGGTTGGGCGTAGGGTCAGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR GCA 72 bp CATACTGTACTTTGTAAAATGCCTGCCAAAATACAATaGAATTTACAGCCCGCACGGTGGACACTGCAGCCT +
Preference number: 3 (lower is better)
Translates to: HTVLCKMPAKIQ*NLQPARWTLQP
Trigger: AGGCTGCAGTGTCCACCGTGCGGGCTGTAAATTGCATTGTATTTTGGCAGGCATTTTACAAAGTACAGTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR CAA 90 bp ATGACCCAGTCTCTGCCCCAACAGTGTCCAATTCCTACAAAACCAACACCCAGTCGTTGGCTTGAAATCTaGTCATTTCTTAAAACAGTC +
Preference number: 3 (lower is better)
Translates to: MTQSLPQQCPIPTKPTPSRWLEI*SFLKTV
Trigger: GACTGTTTTAAGAAATGACAAGATTTCAAGCCAACG...ACTGGGTGTTGGTTTTGTAGGAATTGGACACTGTTGGGGCAGAGACTGGGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR-3UTR CAA 90 bp AAATGTAAGATTTTTCTCATGCACTTTCAGCTTTGGGGAGGGAGGGCAGTACTGAGCGTCACTTCTGGTTaGGGTGGTTGGTTTTGTTTT +
Preference number: 3 (lower is better)
Translates to: KCKIFLMHFQLWGGRAVLSVTSG*GGWFCF
Trigger: AAAACAAAACCAACCACCCAAACCAGAAGTGACGCT...CAGTACTGCCCTCCCTCCCCAAAGCTGAAAGTGCATGAGAAAAATCTTACATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR TCA 72 bp CACCATTTCCCCCACAGAAAACCTCTTGGCATTTCCTaGATGAGTGGGATTAGCAATCTAAATAAATCATAT +
Preference number: 3 (lower is better)
Translates to: HHFPHRKPLGIS*MSGISNLNKSY
Trigger: ATATGATTTATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTTTTCTGTGGGGGAAATGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR TCA 72 bp CAGTACTTTCTGATTCTAAGTTTATCTCAGTACATGTaGTATACACCAAGGCCTAAGACTACAGGGAAGCAT +
Preference number: 3 (lower is better)
Translates to: QYFLILSLSQYM*YTPRPKTTGKH
Trigger: ATGCTTCCCTGTAGTCTTAGGCCTTGGTGTATATCACATGTACTGAGATAAACTTAGAATCAGAAAGTACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR GCA 72 bp ACTGGGTTCTTATTTCAGCTGTTTACCAAATTCAAATaGCTTACTGTTTACAGCTACAATCAGGAAGCTCTA +
Preference number: 3 (lower is better)
Translates to: TGFLFQLFTKFK*LTVYSYNQEAL
Trigger: TAGAGCTTCCTGATTGTAGCTGTAAACAGTAAGGCATTTGAATTTGGTAAACAGCTGAAATAAGAACCCAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
CDS-3UTR TCA 90 bp GAGCCACTCATGAAGTTTTCCTCAGCCTTTGTAAGGCCTGAATCCTCCCCTACATTCCGTATCATTGAGTaGAACACTGTGTGGTTTTGG +
Preference number: 4 (lower is better)
Translates to: EPLMKFSSAFVRPESSPTFRIIE*NTVWFW
Trigger: CCAAAACCACACAGTGTTTCACTCAATGATACGGAA...TGTAGGGGAGGATTCAGGCCTTACAAAGGCTGAGGAAAACTTCATGAGTGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
CDS-3UTR GCA 90 bp GAGCCACTCATGAAGTTTTCCTCAGCCTTTGTAAGGCCTGAATCCTCCCCTACATCCGTCTTGTTTGGATaGATTCAGTGGAACAGCTTT +
Preference number: 4 (lower is better)
Translates to: EPLMKFSSAFVRPESSPTSVLFG*IQWNSF
Trigger: AAAGCTGTTCCACTGAATGCATCCAAACAAGACGGA...TGTAGGGGAGGATTCAGGCCTTACAAAGGCTGAGGAAAACTTCATGAGTGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
3UTR CAA 72 bp ATAACTAAGCGTCACTTCTGGTTTGGGTGGTTGGTTTaGTTTTTCAGTAACTACTACACAAGAAGTTTTATA +
Preference number: 4 (lower is better)
Translates to: ITKRHFWFGWLV*FFSNYYTRSFI
Trigger: TATAAAACTTCTTGTGTAGTAGTTACTGAAAAACAAAACCAACCACCCAAACCAGAAGTGACGCTTAGTTAT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
CDS-3UTR CAA 90 bp CCCTTCCTGCACAGTAAGCCCTATGACCCAGTCTCTGCCCCAACAGTGTCCAATAAGGGGCCTTTGAATTaGAGGTCTGAAGGAGGGTCG +
Preference number: 5 (lower is better)
Translates to: PFLHSKPYDPVSAPTVSNKGPLN*RSEGGS
Trigger: CGACCCTCCTTCAGACCTCAAATTCAAAGGCCCCTT...ATTGGACACTGTTGGGGCAGAGACTGGGTCATAGGGCTTACTGTGCAGGAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
CDS-3UTR CAA 90 bp TGCACAGTAAGCCCTATGACCCAGTCTCTGCCCCAACAGTGTCCAATTCCTACATCTCCCTGGAGTCGCTaGCACTCTTCCATCAGTTTC +
Preference number: 5 (lower is better)
Translates to: CTVSPMTQSLPQQCPIPTSPWSR*HSSISF
Trigger: GAAACTGATGGAAGAGTGCAAGCGACTCCAGGGAGA...TGTAGGAATTGGACACTGTTGGGGCAGAGACTGGGTCATAGGGCTTACTGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
CDS TCA 90 bp GATCATTCTTCAAGTGATAACTGGCAGGTGTTGCAACTGCACTGCTaGCGCTGCTCAATGAAGCGACAGTTGAAGCAATCCCTGGTGGAG +
Preference number: 5 (lower is better)
Translates to: DHSSSDNWQVLQLHC*RCSMKRQLKQSLVE
Trigger: CTCCACCAGGGATTGCTTCAACTGTCGCTTCATTGAGCAGCGTCAGCAGTGCAGTTGCAACACCTGCCAGTTATCACTTGAAGAATGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232686.2
CDS-3UTR CAA 90 bp ATGCCTGCCAAAATACAATGCAATTTACAGCCCGCACGGTGGACACTGCAGCCTTCTGTGAAGGGGCCTTaGAATTTGAGGTCTGAAGGA +
Preference number: 5 (lower is better)
Translates to: MPAKIQCNLQPARWTLQPSVKGP*NLRSEG
Trigger: TCCTTCAGACCTCAAATTCAAAGGCCCCTTCACAGA...AGGCTGCAGTGTCCACCGTGCGGGCTGTAAATTGCATTGTATTTTGGCAGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
CDS-3UTR CAA 90 bp GGTCTACAGAGTGAGTTCCAGGACTGCCAAGGCTACAAAGAGAAAACCTGTCTCTTCAGTGGAACAGCTTaGCTAGGTTCCATATCATTC +
Preference number: 5 (lower is better)
Translates to: GLQSEFQDCQGYKEKTCLFSGTA*LGSISF
Trigger: GAATGATATGGAACCTAGCAAAGCTGTTCCACTGAA...GAGACAGGTTTTCTCTTTGTAGCCTTGGCAGTCCTGGAACTCACTCTGTAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024897.10
CDS TCA 72 bp TCAAGTGATAACTGGCAGGTGTTGCAACTGCACTGCTaGCGCTGCTCAATGAAGCGACAGTTGAAGCAATCC +
Preference number: 6 (lower is better)
Translates to: SSDNWQVLQLHC*RCSMKRQLKQS
Trigger: GGATTGCTTCAACTGTCGCTTCATTGAGCAGCGTCAGCAGTGCAGTTGCAACACCTGCCAGTTATCACTTGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000232686.2
CDS CCA 72 bp GTTCCATATCATTCTGCTTCACCTCTTTTAGTTCCCTaGGATCATTCTTCAAGTGATAACTGGCAGGTGTTG +
Preference number: 6 (lower is better)
Translates to: VPYHSASPLLVP*DHSSSDNWQVL
Trigger: CAACACCTGCCAGTTATCACTTGAAGAATGATCCCAGGGAACTAAAAGAGGTGAAGCAGAATGATATGGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000232686.2