Pregenerated sensors for VAMP9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000105078Ensembl transcript IDs: ENSMUST00000198837.3, ENSMUST00000212164.2, ENSMUST00000212249.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCAGTTGTTGGGTTAGTGCTTGCTGCTGCTGTAGACCTCTGCTTTaGTCCCAGCATCTACACTGGGCAGCTCCCAACTGCCTCACATTC | + |
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Preference number: 1 (lower is better) Translates to: PSCWVSACCCCRPLL*SQHLHWAAPNCLTF Trigger: GAATGTGAGGCAGTTGGGAGCTGCCCAGTGTAGATGCTGGGATCAAAGCAGAGGTCTACAGCAGCAGCAAGCACTAACCCAACAACTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000212164.2 ENSMUST00000212249.2 |
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| 3UTR CCA 90 bp | CTCACATTCCAGATCATGGGATCCAGTGCCCTCTTCTGGTCTCCATaGGCATTGCATTCATGTGCGTTCATAGGTACAGACATGTGCTGT | + |
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Preference number: 1 (lower is better) Translates to: LTFQIMGSSALFWSP*ALHSCAFIGTDMCC Trigger: ACAGCACATGTCTGTACCTATGAACGCACATGAATGCAATGCCCATGGAGACCAGAAGAGGGCACTGGATCCCATGATCTGGAATGTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000212164.2 ENSMUST00000212249.2 |
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| 3UTR-3UTR GCA 90 bp | TTAAGAAATGCAGATGGTGCCATAATATCCAAGCCATTGTCTGTAGCACACAAATATGGTAGACATAGCTaGCCTCCTCTTCCCAGTGCT | + |
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Preference number: 2 (lower is better) Translates to: LRNADGAIISKPLSVAHKYGRHS*PPLPSA Trigger: AGCACTGGGAAGAGGAGGGCAGCTATGTCTACCATA...TTTGTGTGCTACAGACAATGGCTTGGATATTATGGCACCATCTGCATTTCTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212249.2 |
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| 3UTR CCA 72 bp | ACTGGGCAGCTCCCAACTGCCTCACATTCCAGATCATaGGATCCAGTGCCCTCTTCTGGTCTCCATGGGCAT | + |
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Preference number: 3 (lower is better) Translates to: TGQLPTASHSRS*DPVPSSGLHGH Trigger: ATGCCCATGGAGACCAGAAGAGGGCACTGGATCCCATGATCTGGAATGTGAGGCAGTTGGGAGCTGCCCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000212164.2 ENSMUST00000212249.2 |
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| 3UTR TCA 72 bp | TGGGTTAGTGCTTGCTGCTGCTGTAGACCTCTGCTTTaGTCCCAGCATCTACACTGGGCAGCTCCCAACTGC | + |
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Preference number: 3 (lower is better) Translates to: WVSACCCCRPLL*SQHLHWAAPNC Trigger: GCAGTTGGGAGCTGCCCAGTGTAGATGCTGGGATCAAAGCAGAGGTCTACAGCAGCAGCAAGCACTAACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000212164.2 ENSMUST00000212249.2 |
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| 3UTR TCA 72 bp | CTAAACTGGAATGATACGGAGATCAGCATTTCCCCCTaGGCAATGGTGACAAAGACATTTGTGATCTGTTCC | + |
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Preference number: 3 (lower is better) Translates to: LNWNDTEISISP*AMVTKTFVICS Trigger: GGAACAGATCACAAATGTCTTTGTCACCATTGCTCAGGGGGAAATGCTGATCTCCGTATCATTCCAGTTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000212164.2 ENSMUST00000212249.2 |
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| CDS CCA 90 bp | CTCTTGGGAATTTTCCTGGTGGTCTCAAATTCTTCAGCAGTCGCCTaGGGGTCATCTGCCTCTTCAGTGAGGACACTCACTGTTTCCGTT | + |
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Preference number: 5 (lower is better) Translates to: LLGIFLVVSNSSAVA*GSSASSVRTLTVSV Trigger: AACGGAAACAGTGAGTGTCCTCACTGAAGAGGCAGATGACCCCCAGGCGACTGCTGAAGAATTTGAGACCACCAGGAAAATTCCCAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS GCA 90 bp | CACTTTTTACGTCAGACACTCGACTCTTCACCACAGACAGCATGCTaGTGCTTCGAGTTCTGTTGTATTCCATCATGTGCTGTGCTAGTA | + |
|
Preference number: 5 (lower is better) Translates to: HFLRQTLDSSPQTAC*CFEFCCIPSCAVLV Trigger: TACTAGCACAGCACATGATGGAATACAACAGAACTCGAAGCAGCAGCATGCTGTCTGTGGTGAAGAGTCGAGTGTCTGACGTAAAAAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS GCA 90 bp | TTTTTACGTCAGACACTCGACTCTTCACCACAGACAGCATGCTGCTaGTTCGAGTTCTGTTGTATTCCATCATGTGCTGTGCTAGTATTT | + |
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Preference number: 5 (lower is better) Translates to: FLRQTLDSSPQTACC*FEFCCIPSCAVLVF Trigger: AAATACTAGCACAGCACATGATGGAATACAACAGAACTCGAAGCAGCAGCATGCTGTCTGTGGTGAAGAGTCGAGTGTCTGACGTAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS GCA 72 bp | TGGCTCAGCTTTCAGAAGCGCTTGTCTAAGCACCTTTaGAGCCGCTTCCTGATAGGCGCCGCCGGTCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: WLSFQKRLSKHL*SRFLIGAAGQG Trigger: GCCTTGACCGGCGGCGCCTATCAGGAAGCGGCTGCAAAGGTGCTTAGACAAGCGCTTCTGAAAGCTGAGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000198837.3 ENSMUST00000212164.2 ENSMUST00000212249.2 |
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| CDS TCA 72 bp | CTTCAGCAGTCGCCTGGGGGTCATCTGCCTCTTCAGTaGGGACACTCACTGTTTCCGTTTCTCTTTCTAGGA | + |
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Preference number: 6 (lower is better) Translates to: LQQSPGGHLPLQ*GHSLFPFLFLG Trigger: TCCTAGAAAGAGAAACGGAAACAGTGAGTGTCCTCACTGAAGAGGCAGATGACCCCCAGGCGACTGCTGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS CCA 72 bp | ATTTTCCTGGTGGTCTCAAATTCTTCAGCAGTCGCCTaGGGGTCATCTGCCTCTTCAGTGAGGACACTCACT | + |
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Preference number: 6 (lower is better) Translates to: IFLVVSNSSAVA*GSSASSVRTLT Trigger: AGTGAGTGTCCTCACTGAAGAGGCAGATGACCCCCAGGCGACTGCTGAAGAATTTGAGACCACCAGGAAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS GCA 72 bp | CAGACACTCGACTCTTCACCACAGACAGCATGCTGCTaGTTCGAGTTCTGTTGTATTCCATCATGTGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: QTLDSSPQTACC*FEFCCIPSCAV Trigger: CACAGCACATGATGGAATACAACAGAACTCGAAGCAGCAGCATGCTGTCTGTGGTGAAGAGTCGAGTGTCTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS CCA 72 bp | AGCACTTCCACCATGTTCTCTTGGGAATTTTCCTGGTaGTCTCAAATTCTTCAGCAGTCGCCTGGGGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: STSTMFSWEFSW*SQILQQSPGGH Trigger: ATGACCCCCAGGCGACTGCTGAAGAATTTGAGACCACCAGGAAAATTCCCAAGAGAACATGGTGGAAGTGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS GCA 72 bp | TTACGTCAGACACTCGACTCTTCACCACAGACAGCATaGTGCTGCTTCGAGTTCTGTTGTATTCCATCATGT | + |
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Preference number: 6 (lower is better) Translates to: LRQTLDSSPQTA*CCFEFCCIPSC Trigger: ACATGATGGAATACAACAGAACTCGAAGCAGCAGCATGCTGTCTGTGGTGAAGAGTCGAGTGTCTGACGTAA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS CCA 72 bp | AGACTCTTGACACCTTCCTATTTGAATGATGGTCGTTaGCTCAGCTTTCAGAAGCGCTTGTCTAAGCACCTT | + |
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Preference number: 6 (lower is better) Translates to: RLLTPSYLNDGR*LSFQKRLSKHL Trigger: AAGGTGCTTAGACAAGCGCTTCTGAAAGCTGAGCCAACGACCATCATTCAAATAGGAAGGTGTCAAGAGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212249.2 |
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| CDS TCA 72 bp | TGCCATAATATCCAAGCCATTGTCTTCCTATTTGAATaGTGGTCGTTGGCTCAGCTTTCAGAAGCGCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: CHNIQAIVFLFE*WSLAQLSEALV Trigger: GACAAGCGCTTCTGAAAGCTGAGCCAACGACCATCATTCAAATAGGAAGACAATGGCTTGGATATTATGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212164.2 |
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| CDS CAA 90 bp | AGAAATGCAGATGGTGCCATAATATCCAAGCCATTGTCTTCCTATTaGAATGATGGTCGTTGGCTCAGCTTTCAGAAGCGCTTGTCTAAG | + |
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Preference number: 6 (lower is better) Translates to: RNADGAIISKPLSSY*NDGRWLSFQKRLSK Trigger: CTTAGACAAGCGCTTCTGAAAGCTGAGCCAACGACCATCATTCAAATAGGAAGACAATGGCTTGGATATTATGGCACCATCTGCATTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212164.2 |
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| CDS CAA 72 bp | GTCAATAAAGAGAGTATGGTAGACATAGCTTCCTATTaGAATGATGGTCGTTGGCTCAGCTTTCAGAAGCGC | + |
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Preference number: 6 (lower is better) Translates to: VNKESMVDIASY*NDGRWLSFQKR Trigger: GCGCTTCTGAAAGCTGAGCCAACGACCATCATTCAAATAGGAAGCTATGTCTACCATACTCTCTTTATTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS CAA 90 bp | AGTGATTCCGTCAATAAAGAGAGTATGGTAGACATAGCTTCCTATTaGAATGATGGTCGTTGGCTCAGCTTTCAGAAGCGCTTGTCTAAG | + |
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Preference number: 6 (lower is better) Translates to: SDSVNKESMVDIASY*NDGRWLSFQKRLSK Trigger: CTTAGACAAGCGCTTCTGAAAGCTGAGCCAACGACCATCATTCAAATAGGAAGCTATGTCTACCATACTCTCTTTATTGACGGAATCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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| CDS CAA 72 bp | TTAAGAAATGCAGATGGTGCCATAATATCCAAGCCATaGTCTTCCTATTTGAATGATGGTCGTTGGCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: LRNADGAIISKP*SSYLNDGRWLS Trigger: GCTGAGCCAACGACCATCATTCAAATAGGAAGACAATGGCTTGGATATTATGGCACCATCTGCATTTCTTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212164.2 |
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| CDS CAA 72 bp | GTAATTACAATCTTGAAGCACTTCCACCATGTTCTCTaGGGAATTTTCCTGGTGGTCTCAAATTCTTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: VITILKHFHHVL*GIFLVVSNSSA Trigger: TGCTGAAGAATTTGAGACCACCAGGAAAATTCCCAAGAGAACATGGTGGAAGTGCTTCAAGATTGTAATTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198837.3 |
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