Pregenerated sensors for VAMP8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050732Ensembl transcript IDs: ENSMUST00000059983.10, ENSMUST00000142613.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GACAGGGTCCTCTGGGTCTCTGTAACCCACTCTCAGGACCATGAGATGCAGCTAGGAGAGGGCTCCTCTTaGCACATATTAGGGAGGTCA | + |
|
Preference number: 2 (lower is better) Translates to: DRVLWVSVTHSQDHEMQLGEGSS*HILGRS Trigger: TGACCTCCCTAATATGTGCCAAGAGGAGCCCTCTCC...TAGCTGCATCTCATGGTCCTGAGAGTGGGTTACAGAGACCCAGAGGACCCTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| 3UTR-3UTR GCA 90 bp | AAGAGGTCTTTATTGCCCACCAGCCACCAACAGTTTCCCAGCCACAGACAGGGTCTCAGGACCATGAGATaGAGCTACAGTCCAGCTGTC | + |
|
Preference number: 2 (lower is better) Translates to: KRSLLPTSHQQFPSHRQGLRTMR*SYSPAV Trigger: GACAGCTGGACTGTAGCTGCATCTCATGGTCCTGAG...ACCCTGTCTGTGGCTGGGAAACTGTTGGTGGCTGGTGGGCAATAAAGACCTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| 3UTR-3UTR CAA 90 bp | CTCCCAGGGGATCAAGGTGCGTCTGGGGCATCTGATGCAGCAGAAGGCCCTCACGGGACTGAGCAGCACTaGGGTGGAGGAGGACAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: LPGDQGASGASDAAEGPHGTEQH*GGGGQE Trigger: CTCCTGTCCTCCTCCACCCAAGTGCTGCTCAGTCCC...GTGAGGGCCTTCTGCTGCATCAGATGCCCCAGACGCACCTTGATCCCCTGGGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| 3UTR-3UTR CAA 90 bp | CTCCCAGGGGATCAAGGTGCGTCTGGGGCATCTGATGCAGCAGAAGGCCCTCACAGGAGAGGGCTCCTCTaGGCACATATTAGGGAGGTC | + |
|
Preference number: 3 (lower is better) Translates to: LPGDQGASGASDAAEGPHRRGLL*AHIREV Trigger: GACCTCCCTAATATGTGCCAAGAGGAGCCCTCTCCT...GTGAGGGCCTTCTGCTGCATCAGATGCCCCAGACGCACCTTGATCCCCTGGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| 3UTR-3UTR CAA 90 bp | ACCATGAGATGCAGCTACAGTCCAGCTGTCTCCTCCCAGGGGATCAAGGTGCGTGGGACTGAGCAGCACTaGGGTGGAGGAGGACAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: TMRCSYSPAVSSQGIKVRGTEQH*GGGGQE Trigger: CTCCTGTCCTCCTCCACCCAAGTGCTGCTCAGTCCC...ACGCACCTTGATCCCCTGGGAGGAGACAGCTGGACTGTAGCTGCATCTCATGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGGATACCAAGAGGTCTTTATTGCCCACCAGCCACCAACAGTTTCCCAGCCACAGGAGAGGGCTCCTCTaGGCACATATTAGGGAGGTC | + |
|
Preference number: 3 (lower is better) Translates to: RDTKRSLLPTSHQQFPSHRRGLL*AHIREV Trigger: GACCTCCCTAATATGTGCCAAGAGGAGCCCTCTCCT...GTGGCTGGGAAACTGTTGGTGGCTGGTGGGCAATAAAGACCTCTTGGTATCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS-3UTR CCA 90 bp | CTCCTCCCAGGGGATCAAGGTGCGTCTGGGGCATCTGATGCAGCAGAAGGCCCTCCAGGTTCTCCCCTCTaGCCAAGATCCGCTCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: LLPGDQGASGASDAAEGPPGSPL*PRSAPH Trigger: ATGTGGAGCGGATCTTGGCCAGAGGGGAGAACCTGG...AGGGCCTTCTGCTGCATCAGATGCCCCAGACGCACCTTGATCCCCTGGGAGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS-3UTR CCA 90 bp | ACCATGAGATGCAGCTACAGTCCAGCTGTCTCCTCCCAGGGGATCAAGGTGCGTCCAGGTTCTCCCCTCTaGCCAAGATCCGCTCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: TMRCSYSPAVSSQGIKVRPGSPL*PRSAPH Trigger: ATGTGGAGCGGATCTTGGCCAGAGGGGAGAACCTGG...ACGCACCTTGATCCCCTGGGAGGAGACAGCTGGACTGTAGCTGCATCTCATGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS-3UTR GCA 90 bp | GAGGTCTTTATTGCCCACCAGCCACCAACAGTTTCCCAGCCACAGACAGGGTCCCCCTCCACCTCACTCTaGAGGTTCCTAACTCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: EVFIAHQPPTVSQPQTGSPSTSL*RFLTRS Trigger: TGACCGAGTTAGGAACCTGCAGAGTGAGGTGGAGGG...GGACCCTGTCTGTGGCTGGGAAACTGTTGGTGGCTGGTGGGCAATAAAGACCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059983.10 |
||
| CDS-3UTR CCA 90 bp | GACCATGAGATGCAGCTACAGTCCAGCTGTCTCCTCCCAGGGGATCAAGGTGCGTTCCGGGCCACCTTCTaGGACGTTGTCTTGAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: DHEMQLQSSCLLPGDQGAFRATF*DVVLKC Trigger: ACACTTCAAGACAACGTCCCAGAAGGTGGCCCGGAA...CGCACCTTGATCCCCTGGGAGGAGACAGCTGGACTGTAGCTGCATCTCATGGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS-3UTR CCA 90 bp | AGAGGTCTTTATTGCCCACCAGCCACCAACAGTTTCCCAGCCACAGACAGGGTCTTCCGGGCCACCTTCTaGGACGTTGTCTTGAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: RGLYCPPATNSFPATDRVFRATF*DVVLKC Trigger: ACACTTCAAGACAACGTCCCAGAAGGTGGCCCGGAA...GACCCTGTCTGTGGCTGGGAAACTGTTGGTGGCTGGTGGGCAATAAAGACCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS-3UTR CCA 90 bp | AGATGCAGCTACAGTCCAGCTGTCTCCTCCCAGGGGATCAAGGTGCGTCTGGGGATCCGCTCCACATTCTaGGTCATAATATTCTTGACT | + |
|
Preference number: 4 (lower is better) Translates to: RCSYSPAVSSQGIKVRLGIRSTF*VIIFLT Trigger: AGTCAAGAATATTATGACCCAGAATGTGGAGCGGAT...CCCCAGACGCACCTTGATCCCCTGGGAGGAGACAGCTGGACTGTAGCTGCATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059983.10 |
||
| CDS-3UTR CAA 90 bp | CTCCTCCCAGGGGATCAAGGTGCGTCTGGGGCATCTGATGCAGCAGAAGGCCCTTGGGTCATAATATTCTaGACTCCCTCCACCTCACTC | + |
|
Preference number: 5 (lower is better) Translates to: LLPGDQGASGASDAAEGPWVIIF*TPSTSL Trigger: GAGTGAGGTGGAGGGAGTCAAGAATATTATGACCCA...AGGGCCTTCTGCTGCATCAGATGCCCCAGACGCACCTTGATCCCCTGGGAGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059983.10 |
||
| CDS CCA 90 bp | AAGTGTTCAGACGTGGCTTCCAAGTCCTCTGTCTTGTTTCGGAGGTaGTCCAGGTTCTCCCCTCTGGCCAAGATCCGCTCCACATTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: KCSDVASKSSVLFRR*SRFSPLAKIRSTFW Trigger: CCAGAATGTGGAGCGGATCTTGGCCAGAGGGGAGAACCTGGACCACCTCCGAAACAAGACAGAGGACTTGGAAGCCACGTCTGAACACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS CCA 90 bp | AGGTGGTCCAGGTTCTCCCCTCTGGCCAAGATCCGCTCCACATTCTaGGTCATAATATTCTTGACTCCCTCCACCTCACTCTGCAGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: RWSRFSPLAKIRSTF*VIIFLTPSTSLCRF Trigger: GAACCTGCAGAGTGAGGTGGAGGGAGTCAAGAATATTATGACCCAGAATGTGGAGCGGATCTTGGCCAGAGGGGAGAACCTGGACCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059983.10 |
||
| CDS GCA 90 bp | TCCACATTCTGGGTCATAATATTCTTGACTCCCTCCACCTCACTCTaGAGGTTCCTAACTCGGTCATTTCCGGCACTCCCACTGGCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: STFWVIIFLTPSTSL*RFLTRSFPALPLAS Trigger: GGAGGCCAGTGGGAGTGCCGGAAATGACCGAGTTAGGAACCTGCAGAGTGAGGTGGAGGGAGTCAAGAATATTATGACCCAGAATGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059983.10 |
||
| CDS CCA 90 bp | ACAATCATCTTCACATTCTTCCACCAGAACTTCCGGGCCACCTTCTaGGACGTTGTCTTGAAGTGTTCAGACGTGGCTTCCAAGTCCTCT | + |
|
Preference number: 5 (lower is better) Translates to: TIIFTFFHQNFRATF*DVVLKCSDVASKSS Trigger: AGAGGACTTGGAAGCCACGTCTGAACACTTCAAGACAACGTCCCAGAAGGTGGCCCGGAAGTTCTGGTGGAAGAATGTGAAGATGATTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS CCA 72 bp | GACGTGGCTTCCAAGTCCTCTGTCTTGTTTCGGAGGTaGTCCAGGTTCTCCCCTCTGGCCAAGATCCGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: DVASKSSVLFRR*SRFSPLAKIRS Trigger: GGAGCGGATCTTGGCCAGAGGGGAGAACCTGGACCACCTCCGAAACAAGACAGAGGACTTGGAAGCCACGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS CAA 72 bp | CACCAGAACTTCCGGGCCACCTTCTGGGACGTTGTCTaGAAGTGTTCAGACGTGGCTTCCAAGTCCTCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: HQNFRATFWDVV*KCSDVASKSSV Trigger: GACAGAGGACTTGGAAGCCACGTCTGAACACTTCAAGACAACGTCCCAGAAGGTGGCCCGGAAGTTCTGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS TCA 72 bp | ACCAGAACTTCCGGGCCACCTTCTGGGACGTTGTCTTaGAGTGTTCAGACGTGGCTTCCAAGTCCTCTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: TRTSGPPSGTLS*SVQTWLPSPLS Trigger: AGACAGAGGACTTGGAAGCCACGTCTGAACACTTCAAGACAACGTCCCAGAAGGTGGCCCGGAAGTTCTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||
| CDS CCA 72 bp | AGGTTCTCCCCTCTGGCCAAGATCCGCTCCACATTCTaGGTCATAATATTCTTGACTCCCTCCACCTCACTC | + |
|
Preference number: 6 (lower is better) Translates to: RFSPLAKIRSTF*VIIFLTPSTSL Trigger: GAGTGAGGTGGAGGGAGTCAAGAATATTATGACCCAGAATGTGGAGCGGATCTTGGCCAGAGGGGAGAACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059983.10 |
||
| CDS CCA 72 bp | TTCACATTCTTCCACCAGAACTTCCGGGCCACCTTCTaGGACGTTGTCTTGAAGTGTTCAGACGTGGCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: FTFFHQNFRATF*DVVLKCSDVAS Trigger: GGAAGCCACGTCTGAACACTTCAAGACAACGTCCCAGAAGGTGGCCCGGAAGTTCTGGTGGAAGAATGTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059983.10 ENSMUST00000142613.2 |
||