Pregenerated sensors for VAMP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073002Ensembl transcript IDs: ENSMUST00000074231.6, ENSMUST00000101285.10, ENSMUST00000206154.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCAGCAGTCCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATaGAGAGGTGCACATAATCCTGGATGCCCTTCAGCAGTCATTTGG | + |
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Preference number: 1 (lower is better) Translates to: CSSPLSRASPWHDGR*RGAHNPGCPSAVIW Trigger: CCAAATGACTGCTGAAGGGCATCCAGGATTATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGACTGCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR CCA 90 bp | AGAGAGAGCATTTTTAACCAAAGAGCAGCTTTTACTGAGCTCCAGTaGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACTCTCAAGGGC | + |
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Preference number: 1 (lower is better) Translates to: RESIFNQRAAFTELQ*CGLIGPVQQSTLKG Trigger: GCCCTTGAGAGTGGACTGCTGCACTGGCCCTATTAGGCCACACCACTGGAGCTCAGTAAAAGCTGCTCTTTGGTTAAAAATGCTCTCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000206154.2 |
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| 3UTR-3UTR TCA 90 bp | CAGTGGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACTCTCAAGGGCCAGTCCAAGAGCAGCTTTTACTaGGCTCCAGTGGTGTGGCCT | + |
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Preference number: 2 (lower is better) Translates to: QWCGLIGPVQQSTLKGQSKSSFY*APVVWP Trigger: AGGCCACACCACTGGAGCTCAGTAAAAGCTGCTCTT...GGACTGGCCCTTGAGAGTGGACTGCTGCACTGGCCCTATTAGGCCACACCACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR-3UTR GCA 90 bp | CAGTGGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACTCTCAAGGGCCAGTCCGCACATAATCCTGGATaGCCTTCAGCAGTCATTTGG | + |
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Preference number: 2 (lower is better) Translates to: QWCGLIGPVQQSTLKGQSAHNPG*PSAVIW Trigger: CCAAATGACTGCTGAAGGGCATCCAGGATTATGTGC...GGACTGGCCCTTGAGAGTGGACTGCTGCACTGGCCCTATTAGGCCACACCACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR-3UTR GCA 90 bp | GCAGCTTTTACTGAGCTCCAGTGGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACCAAAACAGGCCAGTaGAGTCATTCAGCCTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: AAFTELQWCGLIGPVQQSTKTGQ*SHSAFP Trigger: AGGGAAGGCTGAATGACTGCACTGGCCTGTTTTGGT...GGACTGCTGCACTGGCCCTATTAGGCCACACCACTGGAGCTCAGTAAAAGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR-3UTR GCA 90 bp | AGTGCAGCAGTCCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGCACATAATCCTGGATaGCCTTCAGCAGTCATTTGG | + |
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Preference number: 2 (lower is better) Translates to: SAAVHSQGPVHGMMGDAEAHNPG*PSAVIW Trigger: CCAAATGACTGCTGAAGGGCATCCAGGATTATGTGC...CTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGACTGCTGCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGCTTTTACTGAGCTCCAGTGGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCTTTGGGTGTCCTAGATaGAAGCAAACACCAGGATTC | + |
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Preference number: 2 (lower is better) Translates to: AAFTELQWCGLIGPVQQSFGCPR*KQTPGF Trigger: GAATCCTGGTGTTTGCTTCCATCTAGGACACCCAAA...GGACTGCTGCACTGGCCCTATTAGGCCACACCACTGGAGCTCAGTAAAAGCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR CCA 72 bp | CCAGTGCAGTCATTCAGCCTTCCCTTCAGGCCGGGCTaGGTCAGTCCCCAGTCCCTAAGGCATCACCTGCAT | + |
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Preference number: 3 (lower is better) Translates to: PVQSFSLPFRPG*VSPQSLRHHLH Trigger: ATGCAGGTGATGCCTTAGGGACTGGGGACTGACCCAGCCCGGCCTGAAGGGAAGGCTGAATGACTGCACTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR CCA 72 bp | GGCCAGTGCAGCAGTCCACTCTCAAGGGCCAGTCCATaGCATGATGGGAGATGCAGAGGTGCACATAATCCT | + |
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Preference number: 3 (lower is better) Translates to: GQCSSPLSRASP*HDGRCRGAHNP Trigger: AGGATTATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGACTGCTGCACTGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR GCA 72 bp | CCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATaGAGAGGTGCACATAATCCTGGATGCCCTTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: PLSRASPWHDGR*RGAHNPGCPSA Trigger: TGCTGAAGGGCATCCAGGATTATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| 3UTR GCA 72 bp | CATGATGGGAGATGCAGAGGTGCACATAATCCTGGATaGCCTTCAGCAGTCATTTGGGTGTCCTGCATCCTA | + |
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Preference number: 3 (lower is better) Translates to: HDGRCRGAHNPG*PSAVIWVSCIL Trigger: TAGGATGCAGGACACCCAAATGACTGCTGAAGGGCATCCAGGATTATGTGCACCTCTGCATCTCCCATCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074231.6 |
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| 3UTR CCA 72 bp | ATTTTTAACCAAAGAGCAGCTTTTACTGAGCTCCAGTaGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACT | + |
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Preference number: 3 (lower is better) Translates to: IFNQRAAFTELQ*CGLIGPVQQST Trigger: AGTGGACTGCTGCACTGGCCCTATTAGGCCACACCACTGGAGCTCAGTAAAAGCTGCTCTTTGGTTAAAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000206154.2 |
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| CDS-3UTR TCA 90 bp | GCAGTCCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACTCCGCCAGCTTGCCGTaGCGCTCCAGGACCTTGTCG | + |
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Preference number: 4 (lower is better) Translates to: AVHSQGPVHGMMGDAEVHSASLP*RSRTLS Trigger: CGACAAGGTCCTGGAGCGTCACGGCAAGCTGGCGGA...GTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGACTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR TCA 90 bp | GCCAGTGCAGCAGTCCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGTCCAGGAGCTGGTCTaGACGCTGCTCCAACTCCGC | + |
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Preference number: 4 (lower is better) Translates to: ASAAVHSQGPVHGMMGDAVQELV*TLLQLR Trigger: GCGGAGTTGGAGCAGCGTTCAGACCAGCTCCTGGAC...TGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGACTGCTGCACTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR TCA 90 bp | TTTACTGAGCTCCAGTGGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACTCTCTCCGCCAGCTTGCCGTaGCGCTCCAGGACCTTGTCG | + |
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Preference number: 4 (lower is better) Translates to: FTELQWCGLIGPVQQSTLSASLP*RSRTLS Trigger: CGACAAGGTCCTGGAGCGTCACGGCAAGCTGGCGGA...GAGAGTGGACTGCTGCACTGGCCCTATTAGGCCACACCACTGGAGCTCAGTAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR TCA 90 bp | CACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACATAATCTCCGCCAGCTTGCCGTaGCGCTCCAGGACCTTGTCG | + |
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Preference number: 4 (lower is better) Translates to: HSQGPVHGMMGDAEVHIISASLP*RSRTLS Trigger: CGACAAGGTCCTGGAGCGTCACGGCAAGCTGGCGGA...GATTATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR GCA 90 bp | CCAGTGGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACTCTCAAGGGCCAGTCGCCTGCTGCTGGCATTaGTTCAGTTCTTTCCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: PVVWPNRASAAVHSQGPVACCWH*FSSFPA Trigger: GGCAGGGAAAGAACTGAAGCAATGCCAGCAGCAGGC...GACTGGCCCTTGAGAGTGGACTGCTGCACTGGCCCTATTAGGCCACACCACTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 |
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| CDS-3UTR GCA 90 bp | GGAGACCAAAACAGGCCAGTGCAGTCATTCAGCCTTCCCTTCAGGCCGGGCTGGGTCACTTCGTCCGCCTaGTGCTGGCATTGCTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: GDQNRPVQSFSLPFRPGWVTSSA*CWHCFS Trigger: ACTGAAGCAATGCCAGCAGCAGGCGGACGAAGTGAC...CCAGCCCGGCCTGAAGGGAAGGCTGAATGACTGCACTGGCCTGTTTTGGTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101285.10 |
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| CDS-3UTR TCA 90 bp | TCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACATAATCCTGGAGTCCAGGAGCTGGTCTaGACGCTGCTCCAACTCCGC | + |
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Preference number: 4 (lower is better) Translates to: SRASPWHDGRCRGAHNPGVQELV*TLLQLR Trigger: GCGGAGTTGGAGCAGCGTTCAGACCAGCTCCTGGAC...TCCAGGATTATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR CCA 90 bp | GTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACTCTCAAGGGCCAGTCCATGGCTCGTCCGCCTGCTGCTaGCATTGCTTCAGTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: VWPNRASAAVHSQGPVHGSSACC*HCFSSF Trigger: GAAAGAACTGAAGCAATGCCAGCAGCAGGCGGACGA...GCCATGGACTGGCCCTTGAGAGTGGACTGCTGCACTGGCCCTATTAGGCCACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 |
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| CDS-3UTR GCA 90 bp | AGTGCAGCAGTCCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGCCTGCTGCTGGCATTaGTTCAGTTCTTTCCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: SAAVHSQGPVHGMMGDAEACCWH*FSSFPA Trigger: GGCAGGGAAAGAACTGAAGCAATGCCAGCAGCAGGC...CTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGACTGCTGCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 |
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| CDS-3UTR TCA 90 bp | GCAGTCCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACTCTTGGTTGTCTTGCTaGAGGCCGAACTCATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: AVHSQGPVHGMMGDAEVHSWLSC*RPNSCP Trigger: TGGACATGAGTTCGGCCTTCAGCAAGACAACCAAGA...GTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR GCA 90 bp | GCTTTTACTGAGCTCCAGTGGTGTGGCCTAATAGGGCCAGTGCAGCAGTCCACTGTCACTTCGTCCGCCTaGTGCTGGCATTGCTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: AFTELQWCGLIGPVQQSTVTSSA*CWHCFS Trigger: ACTGAAGCAATGCCAGCAGCAGGCGGACGAAGTGAC...AGTGGACTGCTGCACTGGCCCTATTAGGCCACACCACTGGAGCTCAGTAAAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 |
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| CDS-3UTR GCA 90 bp | TCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACATAATCCTGGAAGCTGGTCTGAACGCTaGTCCAACTCCGCCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: SRASPWHDGRCRGAHNPGSWSER*SNSASL Trigger: CAAGCTGGCGGAGTTGGAGCAGCGTTCAGACCAGCT...TCCAGGATTATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR CCA 90 bp | TCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACATAATCCTGTCGTCCGCCTGCTGCTaGCATTGCTTCAGTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SQGPVHGMMGDAEVHIILSSACC*HCFSSF Trigger: GAAAGAACTGAAGCAATGCCAGCAGCAGGCGGACGA...CAGGATTATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 |
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| CDS-3UTR TCA 90 bp | TCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACATAATCCTGGATCTTGGTTGTCTTGCTaGAGGCCGAACTCATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SRASPWHDGRCRGAHNPGSWLSC*RPNSCP Trigger: TGGACATGAGTTCGGCCTTCAGCAAGACAACCAAGA...TCCAGGATTATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR TCA 90 bp | TGGATGCCCTTCAGCAGTCATTTGGGTGTCCTAGATGGAAGCAAACACCAGGATTCTTGGTTGTCTTGCTaGAGGCCGAACTCATGTCCA | + |
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Preference number: 4 (lower is better) Translates to: WMPFSSHLGVLDGSKHQDSWLSC*RPNSCP Trigger: TGGACATGAGTTCGGCCTTCAGCAAGACAACCAAGA...ATCCTGGTGTTTGCTTCCATCTAGGACACCCAAATGACTGCTGAAGGGCATCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS-3UTR CAA 90 bp | GTCCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACATACGCCTGCTGCTGGCATaGCTTCAGTTCTTTCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: VHSQGPVHGMMGDAEVHIRLLLA*LQFFPC Trigger: GCAGGGAAAGAACTGAAGCAATGCCAGCAGCAGGCG...TATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 |
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| CDS-3UTR CAA 90 bp | AGTCCACTCTCAAGGGCCAGTCCATGGCATGATGGGAGATGCAGAGGTGCACATCGCCTGCTGCTGGCATaGCTTCAGTTCTTTCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: SPLSRASPWHDGRCRGAHRLLLA*LQFFPC Trigger: GCAGGGAAAGAACTGAAGCAATGCCAGCAGCAGGCG...ATGTGCACCTCTGCATCTCCCATCATGCCATGGACTGGCCCTTGAGAGTGGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 |
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| CDS CAA 90 bp | ACCCGGCACCGGATATTTTCCCAGCGCTTCTGCTGGGCTAAAGTCTaGGTTGTCTTGCTGAAGGCCGAACTCATGTCCAGGAGCTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: TRHRIFSQRFCWAKV*VVLLKAELMSRSWS Trigger: AGACCAGCTCCTGGACATGAGTTCGGCCTTCAGCAAGACAACCAAGACTTTAGCCCAGCAGAAGCGCTGGGAAAATATCCGGTGCCGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS CAA 72 bp | TCCCAGCGCTTCTGCTGGGCTAAAGTCTTGGTTGTCTaGCTGAAGGCCGAACTCATGTCCAGGAGCTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: SQRFCWAKVLVV*LKAELMSRSWS Trigger: AGACCAGCTCCTGGACATGAGTTCGGCCTTCAGCAAGACAACCAAGACTTTAGCCCAGCAGAAGCGCTGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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| CDS CAA 72 bp | CGGATATTTTCCCAGCGCTTCTGCTGGGCTAAAGTCTaGGTTGTCTTGCTGAAGGCCGAACTCATGTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: RIFSQRFCWAKV*VVLLKAELMSR Trigger: CCTGGACATGAGTTCGGCCTTCAGCAAGACAACCAAGACTTTAGCCCAGCAGAAGCGCTGGGAAAATATCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074231.6 ENSMUST00000101285.10 ENSMUST00000206154.2 |
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