Pregenerated sensors for VAMP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026696Ensembl transcript IDs: ENSMUST00000050010.11, ENSMUST00000132158.8, ENSMUST00000135241.8, ENSMUST00000150040.8, ENSMUST00000155003.2, ENSMUST00000194810.6
Found 125 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCACGAGGCATTGAGAAGCCGGGAAACGGGGTGTGGCACTACATTTaGTCATCTCCCATAATACTCCGTATGTGTCAAAGGCACTTGCCG | + |
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Preference number: 1 (lower is better) Translates to: SRGIEKPGNGVWHYI*SSPIILRMCQRHLP Trigger: CGGCAAGTGCCTTTGACACATACGGAGTATTATGGGAGATGAGCAAATGTAGTGCCACACCCCGTTTCCCGGCTTCTCAATGCCTCGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR TCA 90 bp | CTGTTACAGAAAAACCACAGGGGCACGCATCAGGCACGGCAGTGGTaGCCTGATTTCACTGGGCATCAACTAACATTAGCAAAGCTACTT | + |
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Preference number: 1 (lower is better) Translates to: LLQKNHRGTHQARQW*PDFTGHQLTLAKLL Trigger: AAGTAGCTTTGCTAATGTTAGTTGATGCCCAGTGAAATCAGGTCACCACTGCCGTGCCTGATGCGTGCCCCTGTGGTTTTTCTGTAACAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR TCA 90 bp | GAAGGCACATTTGTATGGACTAAGATGGCCCCTTTCTGTGTCTTCTaGGCCACTGCCTTTCTGCTGTTATTTGACAACCCCCACCTTCAT | + |
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Preference number: 1 (lower is better) Translates to: EGTFVWTKMAPFCVF*ATAFLLLFDNPHLH Trigger: ATGAAGGTGGGGGTTGTCAAATAACAGCAGAAAGGCAGTGGCTCAGAAGACACAGAAAGGGGCCATCTTAGTCCATACAAATGTGCCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR GCA 90 bp | AATATCCAAGTGAGACTAACATCAGGCTTAAAGAAAAGGCTCACCTaGCCAAGCTGGCGCCCACATGTAGTTGTAGCTACTTCTGAGGCT | + |
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Preference number: 1 (lower is better) Translates to: NIQVRLTSGLKKRLT*PSWRPHVVVATSEA Trigger: AGCCTCAGAAGTAGCTACAACTACATGTGGGCGCCAGCTTGGGCAGGTGAGCCTTTTCTTTAAGCCTGATGTTAGTCTCACTTGGATATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR GCA 90 bp | AGAGTCTACAGGAACCCCATCACAGGCACCTCTGCAACTGATGTGTaGTACCCTTTCTCCATTTTAAACAATGTTCCATCATCAGCACTG | + |
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Preference number: 1 (lower is better) Translates to: RVYRNPITGTSATDV*YPFSILNNVPSSAL Trigger: CAGTGCTGATGATGGAACATTGTTTAAAATGGAGAAAGGGTAGCACACATCAGTTGCAGAGGTGCCTGTGATGGGGTTCCTGTAGACTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR GCA 90 bp | CTTATCACATCTGAGGGCACCCACATGCCATACAGAACAGAAAGGTaGCGGTTGCTGCTATCAGAATGGCATTACTTTCTAACACAGAAC | + |
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Preference number: 1 (lower is better) Translates to: LITSEGTHMPYRTER*RLLLSEWHYFLTQN Trigger: GTTCTGTGTTAGAAAGTAATGCCATTCTGATAGCAGCAACCGGCACCTTTCTGTTCTGTATGGCATGTGGGTGCCCTCAGATGTGATAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR CCA 90 bp | TTGCTGCTATCAGAATGGCATTACTTTCTAACACAGAACCCAGAGTaGACTGTAATGAGAGTCTACAGGAACCCCATCACAGGCACCTCT | + |
|
Preference number: 1 (lower is better) Translates to: LLLSEWHYFLTQNPE*TVMRVYRNPITGTS Trigger: AGAGGTGCCTGTGATGGGGTTCCTGTAGACTCTCATTACAGTCCACTCTGGGTTCTGTGTTAGAAAGTAATGCCATTCTGATAGCAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR CCA 90 bp | AAACATATACCATCACGAGGCATTGAGAAGCCGGGAAACGGGGTGTaGCACTACATTTGCTCATCTCCCATAATACTCCGTATGTGTCAA | + |
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Preference number: 1 (lower is better) Translates to: KHIPSRGIEKPGNGV*HYICSSPIILRMCQ Trigger: TTGACACATACGGAGTATTATGGGAGATGAGCAAATGTAGTGCCACACCCCGTTTCCCGGCTTCTCAATGCCTCGTGATGGTATATGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR TCA 90 bp | CTTCTGAGGCTAAGCTGGAAAGATAACTTGAGCCCAGGAATTCTTTaGTCAAAAAGAAAAGGGCTGAAGGGTGTGGTGGCACATACCTCT | + |
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Preference number: 1 (lower is better) Translates to: LLRLSWKDNLSPGIL*SKRKGLKGVVAHTS Trigger: AGAGGTATGTGCCACCACACCCTTCAGCCCTTTTCTTTTTGATCAAAGAATTCCTGGGCTCAAGTTATCTTTCCAGCTTAGCCTCAGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR GCA 90 bp | AGAATGGCATTCTTGCAAATACTGATAGGATGGTTATGCATCTCTTaGAGCAAAGAGTCAGGACTCTACATAGGCTTCCTGGTCACCAGA | + |
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Preference number: 1 (lower is better) Translates to: RMAFLQILIGWLCIS*SKESGLYIGFLVTR Trigger: TCTGGTGACCAGGAAGCCTATGTAGAGTCCTGACTCTTTGCTGCAAGAGATGCATAACCATCCTATCAGTATTTGCAAGAATGCCATTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| 3UTR GCA 90 bp | AATATGAAAAGAATGGCATTCTTGCAAATACTGATAGGATGGTTATaGATCTCTTGCAGCAAAGAGTCAGGACTCTACATAGGCTTCCTG | + |
|
Preference number: 1 (lower is better) Translates to: NMKRMAFLQILIGWL*ISCSKESGLYIGFL Trigger: CAGGAAGCCTATGTAGAGTCCTGACTCTTTGCTGCAAGAGATGCATAACCATCCTATCAGTATTTGCAAGAATGCCATTCTTTTCATATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| 3UTR CCA 90 bp | AACTACAATATGAAAAGAATGGCATTCTTGCAAATACTGATAGGATaGTTATGCATCTCTTGCAGCAAAGAGTCAGGACTCTACATAGGC | + |
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Preference number: 1 (lower is better) Translates to: NYNMKRMAFLQILIG*LCISCSKESGLYIG Trigger: GCCTATGTAGAGTCCTGACTCTTTGCTGCAAGAGATGCATAACCATCCTATCAGTATTTGCAAGAATGCCATTCTTTTCATATTGTAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| 3UTR-3UTR TCA 90 bp | ATCAGGCTTAAAGAAAAGGCTCACCTGCCCAAGCTGGCGCCCACATGTAGTTGTGGCTCTTATCACATCTaGGGGCACCCACATGCCATA | + |
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Preference number: 2 (lower is better) Translates to: IRLKEKAHLPKLAPTCSCGSYHI*GHPHAI Trigger: TATGGCATGTGGGTGCCCTCAGATGTGATAAGAGCC...ACAACTACATGTGGGCGCCAGCTTGGGCAGGTGAGCCTTTTCTTTAAGCCTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGCTGAGAGACACAACGTGGTGTGGTCCTTGCTTTATAAGCTCAAACGTACGACGGCAGTGGTGACCTaGTTTCACTGGGCATCAACT | + |
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Preference number: 2 (lower is better) Translates to: AAERHNVVWSLLYKLKRTTAVVT*FHWAST Trigger: AGTTGATGCCCAGTGAAATCAGGTCACCACTGCCGT...CGTACGTTTGAGCTTATAAAGCAAGGACCACACCACGTTGTGTCTCTCAGCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR GCA 90 bp | AAATCAGCCCTCACTTATTCACCACCAGCATGGTGTGACTTCTGGGGCACAGCCTTCATCACAAACTGCTaGAAGGGAGAGGCTTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: KSALTYSPPAWCDFWGTAFITNC*KGEASV Trigger: AACAGAAGCCTCTCCCTTGCAGCAGTTTGTGATGAA...GGCTGTGCCCCAGAAGTCACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR GCA 90 bp | AAATCAGCCCTCACTTATTCACCACCAGCATGGTGTGACTTCTGGGGCACAGCCAAAGGTGCCGGTTGCTaGTATCAGAATGGCATTACT | + |
|
Preference number: 2 (lower is better) Translates to: KSALTYSPPAWCDFWGTAKGAGC*YQNGIT Trigger: AGTAATGCCATTCTGATAGCAGCAACCGGCACCTTT...GGCTGTGCCCCAGAAGTCACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR CAA 90 bp | GAACTGAACTGTGCAGCACTGTTAAACATATACCATCACGAGGCATaGAGAAGCCGGGAAACGGGGTGTGGCACTACATTTGCTCATCTC | + |
|
Preference number: 2 (lower is better) Translates to: ELNCAALLNIYHHEA*RSRETGCGTTFAHL Trigger: GAGATGAGCAAATGTAGTGCCACACCCCGTTTCCCGGCTTCTCAATGCCTCGTGATGGTATATGTTTAACAGTGCTGCACAGTTCAGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | ATGGCTCTGTGTGCATCTGAGGTCAGTCTGGGTCACACAGTAAGACCGTATCTCCTTTCTGCTGTTATTTaGCAACCCCCACCTTCATGT | + |
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Preference number: 2 (lower is better) Translates to: MALCASEVSLGHTVRPYLLSAVI*QPPPSC Trigger: ACATGAAGGTGGGGGTTGTCAAATAACAGCAGAAAG...GAGATACGGTCTTACTGTGTGACCCAGACTGACCTCAGATGCACACAGAGCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR GCA 90 bp | TCATGTTACTTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGCTGAGGGCACCCACATaGCATACAGAACAGAAAGGT | + |
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Preference number: 2 (lower is better) Translates to: SCYFLAHTGNQPSLIHHQLRAPT*HTEQKG Trigger: ACCTTTCTGTTCTGTATGGCATGTGGGTGCCCTCAG...CTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAAGTAACATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCCCTCACTTATTCACCACCAGCATGGTGTGACTTCTGGGGCACAGCCATACTTGCTGCTATCAGAATaGCATTACTTTCTAACACAG | + |
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Preference number: 2 (lower is better) Translates to: QPSLIHHQHGVTSGAQPYLLLSE*HYFLTQ Trigger: CTGTGTTAGAAAGTAATGCCATTCTGATAGCAGCAA...GTATGGCTGTGCCCCAGAAGTCACACCATGCTGGTGGTGAATAAGTGAGGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGCTGAGAGACACAACGTGGTGTGGTCCTTGCTTTATAAGCTCAAACGTACGGAAGGCACATTTGTATaGACTAAGATGGCCCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: AAERHNVVWSLLYKLKRTEGTFV*TKMAPF Trigger: GAAAGGGGCCATCTTAGTCCATACAAATGTGCCTTC...CGTACGTTTGAGCTTATAAAGCAAGGACCACACCACGTTGTGTCTCTCAGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | CTTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGCATGGTGTCTTCTGAGGCTAAGCTaGAAAGATAACTTGAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: LLGTHWKSALTYSPPAWCLLRLS*KDNLSP Trigger: TGGGCTCAAGTTATCTTTCCAGCTTAGCCTCAGAAG...ACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | TTTGACAACCCCCACCTTCATGTGTTTAGACTGAGTCATGCTCTTACTATCACTACGGCAGTGGTGACCTaGTTTCACTGGGCATCAACT | + |
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Preference number: 2 (lower is better) Translates to: FDNPHLHVFRLSHALTITTAVVT*FHWAST Trigger: AGTTGATGCCCAGTGAAATCAGGTCACCACTGCCGT...AGTGATAGTAAGAGCATGACTCAGTCTAAACACATGAAGGTGGGGGTTGTCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTCATCTCCCATAATACTCCGTATGTGTCAAAGGCACTTGCCGAAATGGTTAAGAACAGGTGTTAAGTaGCAAGGACAGAGGTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: CSSPIILRMCQRHLPKWLRTGVK*QGQRSG Trigger: GCCTGACCTCTGTCCTTGTCACTTAACACCTGTTCT...TAACCATTTCGGCAAGTGCCTTTGACACATACGGAGTATTATGGGAGATGAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGCTGAGAGACACAACGTGGTGTGGTCCTTGCTTTATAAGCTCAAACGTACGAGCCCAGGAATTCTTTaGTCAAAAAGAAAAGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: AAERHNVVWSLLYKLKRTSPGIL*SKRKGL Trigger: CAGCCCTTTTCTTTTTGATCAAAGAATTCCTGGGCT...CGTACGTTTGAGCTTATAAAGCAAGGACCACACCACGTTGTGTCTCTCAGCTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGCATGGTGTGAAATACAAGTCTGTTTaGTCTACAGTGCCGACAGCA | + |
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Preference number: 2 (lower is better) Translates to: FLAHTGNQPSLIHHQHGVKYKSV*STVPTA Trigger: TGCTGTCGGCACTGTAGACCAAACAGACTTGTATTT...CACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | TGCTCATCTCCCATAATACTCCGTATGTGTCAAAGGCACTTGCCGAAATGGTTATATTCACCACCAGCATaGTGTGACTTCTGGGGCACA | + |
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Preference number: 2 (lower is better) Translates to: CSSPIILRMCQRHLPKWLYSPPA*CDFWGT Trigger: TGTGCCCCAGAAGTCACACCATGCTGGTGGTGAATA...TAACCATTTCGGCAAGTGCCTTTGACACATACGGAGTATTATGGGAGATGAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR GCA 90 bp | GGGAAGGCACATTTGTATGGACTAAGATGGCCCCTTTCTGTGTCTTCTGAGCCATCTGCAACTGATGTGTaGTACCCTTTCTCCATTTTA | + |
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Preference number: 2 (lower is better) Translates to: GKAHLYGLRWPLSVSSEPSATDV*YPFSIL Trigger: TAAAATGGAGAAAGGGTAGCACACATCAGTTGCAGA...TGGCTCAGAAGACACAGAAAGGGGCCATCTTAGTCCATACAAATGTGCCTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | TCATGTTACTTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGCTTCTGAGGCTAAGCTaGAAAGATAACTTGAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: SCYFLAHTGNQPSLIHHQLLRLS*KDNLSP Trigger: TGGGCTCAAGTTATCTTTCCAGCTTAGCCTCAGAAG...CTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAAGTAACATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR CAA 90 bp | AAGAATGGCATTCTTGCAAATACTGATAGGATGGTTATGCATCTCTaGCAGCAAAGAGTCAGGACTCTACATAGGCTTCCTGGTCACCAG | + |
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Preference number: 2 (lower is better) Translates to: KNGILANTDRMVMHL*QQRVRTLHRLPGHQ Trigger: CTGGTGACCAGGAAGCCTATGTAGAGTCCTGACTCTTTGCTGCAAGAGATGCATAACCATCCTATCAGTATTTGCAAGAATGCCATTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| 3UTR-3UTR TCA 90 bp | TACGTTTATCCCAACTGGATTAGCAATGTTTTTCTTCCCATCCCTGCTAACCTAAGAACAGGTGTTAAGTaGCAAGGACAGAGGTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: YVYPNWISNVFLPIPANLRTGVK*QGQRSG Trigger: GCCTGACCTCTGTCCTTGTCACTTAACACCTGTTCT...TAGGTTAGCAGGGATGGGAAGAAAAACATTGCTAATCCAGTTGGGATAAACGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGCATGGTGTGTTGCTGCTATCAGAATaGCATTACTTTCTAACACAG | + |
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Preference number: 2 (lower is better) Translates to: FLAHTGNQPSLIHHQHGVLLLSE*HYFLTQ Trigger: CTGTGTTAGAAAGTAATGCCATTCTGATAGCAGCAA...CACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | TACGTTTATCCCAACTGGATTAGCAATGTTTTTCTTCCCATCCCTGCTAACCTACAAAAAGAAAAGGGCTaGAGGGTGTGGTGGCACATA | + |
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Preference number: 2 (lower is better) Translates to: YVYPNWISNVFLPIPANLQKEKG*RVWWHI Trigger: TATGTGCCACCACACCCTTCAGCCCTTTTCTTTTTG...TAGGTTAGCAGGGATGGGAAGAAAAACATTGCTAATCCAGTTGGGATAAACGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTCATCTCCCATAATACTCCGTATGTGTCAAAGGCACTTGCCGAAATGGTTAGCTGGAAAGATAACTTaGGCCCAGGAATTCTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: CSSPIILRMCQRHLPKWLAGKIT*AQEFFD Trigger: ATCAAAGAATTCCTGGGCTCAAGTTATCTTTCCAGC...TAACCATTTCGGCAAGTGCCTTTGACACATACGGAGTATTATGGGAGATGAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR GCA 90 bp | TACGTTTATCCCAACTGGATTAGCAATGTTTTTCTTCCCATCCCTGCTAACCTATTCATCACAAACTGCTaGAAGGGAGAGGCTTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: YVYPNWISNVFLPIPANLFITNC*KGEASV Trigger: AACAGAAGCCTCTCCCTTGCAGCAGTTTGTGATGAA...TAGGTTAGCAGGGATGGGAAGAAAAACATTGCTAATCCAGTTGGGATAAACGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | AATACAATCTCGTATGAACACAAAGAACTGAACTGTGCAGCACTGTTAAACATATCTAATCCCAGCATGTaGGAGGCTGATGGCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: NTISYEHKELNCAALLNISNPSM*EADGSV Trigger: CACAGAGCCATCAGCCTCCCACATGCTGGGATTAGA...TATGTTTAACAGTGCTGCACAGTTCAGTTCTTTGTGTTCATACGAGATTGTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | TACGTTTATCCCAACTGGATTAGCAATGTTTTTCTTCCCATCCCTGCTAACCTAGCTGGAAAGATAACTTaGGCCCAGGAATTCTTTGAT | + |
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Preference number: 2 (lower is better) Translates to: YVYPNWISNVFLPIPANLAGKIT*AQEFFD Trigger: ATCAAAGAATTCCTGGGCTCAAGTTATCTTTCCAGC...TAGGTTAGCAGGGATGGGAAGAAAAACATTGCTAATCCAGTTGGGATAAACGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTCATCTCCCATAATACTCCGTATGTGTCAAAGGCACTTGCCGAAATGGTTACACCCTTATTCTGCTTaGCATAAGAAGGTAAATATC | + |
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Preference number: 2 (lower is better) Translates to: CSSPIILRMCQRHLPKWLHPYSA*HKKVNI Trigger: GATATTTACCTTCTTATGTCAAGCAGAATAAGGGTG...TAACCATTTCGGCAAGTGCCTTTGACACATACGGAGTATTATGGGAGATGAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGGGAGCTACATAGTGCTCGTTTTCAAACACTCCAATGACATTCTTCAAAAACTGATAGGATGGTTATaGATCTCTTGCAGCAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: TGSYIVLVFKHSNDILQKLIGWL*ISCSKE Trigger: CTCTTTGCTGCAAGAGATGCATAACCATCCTATCAG...TTTTTGAAGAATGTCATTGGAGTGTTTGAAAACGAGCACTATGTAGCTCCCAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| 3UTR-3UTR GCA 90 bp | AATACAATCTCGTATGAACACAAAGAACTGAACTGTGCAGCACTGTTAAACATAGTGTGGCACTACATTTaGTCATCTCCCATAATACTC | + |
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Preference number: 2 (lower is better) Translates to: NTISYEHKELNCAALLNIVWHYI*SSPIIL Trigger: GAGTATTATGGGAGATGAGCAAATGTAGTGCCACAC...TATGTTTAACAGTGCTGCACAGTTCAGTTCTTTGTGTTCATACGAGATTGTATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR CCA 90 bp | AATACAATCTCGTATGAACACAAAGAACTGAACTGTGCAGCACTGTTAAACATAAAATACAAGTCTGTTTaGTCTACAGTGCCGACAGCA | + |
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Preference number: 2 (lower is better) Translates to: NTISYEHKELNCAALLNIKYKSV*STVPTA Trigger: TGCTGTCGGCACTGTAGACCAAACAGACTTGTATTT...TATGTTTAACAGTGCTGCACAGTTCAGTTCTTTGTGTTCATACGAGATTGTATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | CAGACTGACTCTCACTTAGATGCAATAATGTCTTTAATGCAACTGAAACACAAGCTCAATGCTCCAATTTaGATTGGTACTTGCCTTTTA | + |
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Preference number: 2 (lower is better) Translates to: QTDSHLDAIMSLMQLKHKLNAPI*IGTCLL Trigger: TAAAAGGCAAGTACCAATTCAAATTGGAGCATTGAG...CTTGTGTTTCAGTTGCATTAAAGACATTATTGCATCTAAGTGAGAGTCAGTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| 3UTR-3UTR CCA 90 bp | AATACAATCTCGTATGAACACAAAGAACTGAACTGTGCAGCACTGTTAAACATAAATCATGTTACTTCTTaGCACACACTGGAAATCAGC | + |
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Preference number: 2 (lower is better) Translates to: NTISYEHKELNCAALLNINHVTS*HTLEIS Trigger: GCTGATTTCCAGTGTGTGCCAAGAAGTAACATGATT...TATGTTTAACAGTGCTGCACAGTTCAGTTCTTTGTGTTCATACGAGATTGTATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| 3UTR-3UTR TCA 90 bp | TGGAAATTGCCTGCAAAGCAACTACAATATGAAAAGAATGGCATTCTTGCAAATCTCAATGCTCCAATTTaGATTGGTACTTGCCTTTTA | + |
|
Preference number: 2 (lower is better) Translates to: WKLPAKQLQYEKNGILANLNAPI*IGTCLL Trigger: TAAAAGGCAAGTACCAATTCAAATTGGAGCATTGAG...ATTTGCAAGAATGCCATTCTTTTCATATTGTAGTTGCTTTGCAGGCAATTTCCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| 3UTR TCA 72 bp | CCACAGGGGCACGCATCAGGCACGGCAGTGGTGACCTaGTTTCACTGGGCATCAACTAACATTAGCAAAGCT | + |
|
Preference number: 3 (lower is better) Translates to: PQGHASGTAVVT*FHWASTNISKA Trigger: AGCTTTGCTAATGTTAGTTGATGCCCAGTGAAATCAGGTCACCACTGCCGTGCCTGATGCGTGCCCCTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | CACTGGAAATCAGCCCTCACTTATTCACCACCAGCATaGTGTGACTTCTGGGGCACAGCCATACACACAGGG | + |
|
Preference number: 3 (lower is better) Translates to: HWKSALTYSPPA*CDFWGTAIHTG Trigger: CCCTGTGTGTATGGCTGTGCCCCAGAAGTCACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR TCA 72 bp | GAAATCAGCCCTCACTTATTCACCACCAGCATGGTGTaGCTTCTGGGGCACAGCCATACACACAGGGATTGC | + |
|
Preference number: 3 (lower is better) Translates to: EISPHLFTTSMV*LLGHSHTHRDC Trigger: GCAATCCCTGTGTGTATGGCTGTGCCCCAGAAGTCACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR GCA 72 bp | GAGGTCAGGCTCTTATCACATCTGAGGGCACCCACATaGCATACAGAACAGAAAGGTGCCGGTTGCTGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: EVRLLSHLRAPT*HTEQKGAGCCY Trigger: ATAGCAGCAACCGGCACCTTTCTGTTCTGTATGGCATGTGGGTGCCCTCAGATGTGATAAGAGCCTGACCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | CCATCACGAGGCATTGAGAAGCCGGGAAACGGGGTGTaGCACTACATTTGCTCATCTCCCATAATACTCCGT | + |
|
Preference number: 3 (lower is better) Translates to: PSRGIEKPGNGV*HYICSSPIILR Trigger: ACGGAGTATTATGGGAGATGAGCAAATGTAGTGCCACACCCCGTTTCCCGGCTTCTCAATGCCTCGTGATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | ACATCAGGCTTAAAGAAAAGGCTCACCTGCCCAAGCTaGCGCCCACATGTAGTTGTAGCTACTTCTGAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: TSGLKKRLTCPS*RPHVVVATSEA Trigger: AGCCTCAGAAGTAGCTACAACTACATGTGGGCGCCAGCTTGGGCAGGTGAGCCTTTTCTTTAAGCCTGATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR GCA 72 bp | GTGAGACTAACATCAGGCTTAAAGAAAAGGCTCACCTaGCCAAGCTGGCGCCCACATGTAGTTGTAGCTACT | + |
|
Preference number: 3 (lower is better) Translates to: VRLTSGLKKRLT*PSWRPHVVVAT Trigger: AGTAGCTACAACTACATGTGGGCGCCAGCTTGGGCAGGTGAGCCTTTTCTTTAAGCCTGATGTTAGTCTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR GCA 72 bp | TCTGAGGGCACCCACATGCCATACAGAACAGAAAGGTaGCGGTTGCTGCTATCAGAATGGCATTACTTTCTA | + |
|
Preference number: 3 (lower is better) Translates to: SEGTHMPYRTER*RLLLSEWHYFL Trigger: TAGAAAGTAATGCCATTCTGATAGCAGCAACCGGCACCTTTCTGTTCTGTATGGCATGTGGGTGCCCTCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR GCA 72 bp | TGGCCCCTTTCTGTGTCTTCTGAGCCACTGCCTTTCTaGTGTTATTTGACAACCCCCACCTTCATGTGTTTA | + |
|
Preference number: 3 (lower is better) Translates to: WPLSVSSEPLPF*CYLTTPTFMCL Trigger: TAAACACATGAAGGTGGGGGTTGTCAAATAACAGCAGAAAGGCAGTGGCTCAGAAGACACAGAAAGGGGCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR GCA 72 bp | ATTGAGAAGCCGGGAAACGGGGTGTGGCACTACATTTaGTCATCTCCCATAATACTCCGTATGTGTCAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: IEKPGNGVWHYI*SSPIILRMCQR Trigger: CCTTTGACACATACGGAGTATTATGGGAGATGAGCAAATGTAGTGCCACACCCCGTTTCCCGGCTTCTCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | CCATACACACAGGGATTGCAGCTGAGAGACACAACGTaGTGTGGTCCTTGCTTTATAAGCTCAAACGTACGT | + |
|
Preference number: 3 (lower is better) Translates to: PYTQGLQLRDTT*CGPCFISSNVR Trigger: ACGTACGTTTGAGCTTATAAAGCAAGGACCACACCACGTTGTGTCTCTCAGCTGCAATCCCTGTGTGTATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR-3UTR CAA 90 bp | ATCAGGCTTAAAGAAAAGGCTCACCTGCCCAAGCTGGCGCCCACATGTAGTTGTCCAGCTTATAAACTTTaGGGACATTTCCCAATGAGT | + |
|
Preference number: 3 (lower is better) Translates to: IRLKEKAHLPKLAPTCSCPAYKL*GHFPMS Trigger: ACTCATTGGGAAATGTCCCAAAAGTTTATAAGCTGG...ACAACTACATGTGGGCGCCAGCTTGGGCAGGTGAGCCTTTTCTTTAAGCCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR TCA 72 bp | TTTGTATGGACTAAGATGGCCCCTTTCTGTGTCTTCTaGGCCACTGCCTTTCTGCTGTTATTTGACAACCCC | + |
|
Preference number: 3 (lower is better) Translates to: FVWTKMAPFCVF*ATAFLLLFDNP Trigger: GGGGTTGTCAAATAACAGCAGAAAGGCAGTGGCTCAGAAGACACAGAAAGGGGCCATCTTAGTCCATACAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | TCACCTACCTCAATCATGTTACTTCTTGGCACACACTaGAAATCAGCCCTCACTTATTCACCACCAGCATGG | + |
|
Preference number: 3 (lower is better) Translates to: SPTSIMLLLGTH*KSALTYSPPAW Trigger: CCATGCTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAAGTAACATGATTGAGGTAGGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | TACAGAACAGAAAGGTGCCGGTTGCTGCTATCAGAATaGCATTACTTTCTAACACAGAACCCAGAGTGGACT | + |
|
Preference number: 3 (lower is better) Translates to: YRTERCRLLLSE*HYFLTQNPEWT Trigger: AGTCCACTCTGGGTTCTGTGTTAGAAAGTAATGCCATTCTGATAGCAGCAACCGGCACCTTTCTGTTCTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR TCA 72 bp | AATAAAAAGACCACAGGCAACACTAACACTGGGTTATaGTGGAGGAGGAACCCATTCATCACAAACTGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: NKKTTGNTNTGL*WRRNPFITNCC Trigger: GCAGCAGTTTGTGATGAATGGGTTCCTCCTCCATCATAACCCAGTGTTAGTGTTGCCTGTGGTCTTTTTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR TCA 72 bp | CTAAGCTGGAAAGATAACTTGAGCCCAGGAATTCTTTaGTCAAAAAGAAAAGGGCTGAAGGGTGTGGTGGCA | + |
|
Preference number: 3 (lower is better) Translates to: LSWKDNLSPGIL*SKRKGLKGVVA Trigger: TGCCACCACACCCTTCAGCCCTTTTCTTTTTGATCAAAGAATTCCTGGGCTCAAGTTATCTTTCCAGCTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | TCAGAATGGCATTACTTTCTAACACAGAACCCAGAGTaGACTGTAATGAGAGTCTACAGGAACCCCATCACA | + |
|
Preference number: 3 (lower is better) Translates to: SEWHYFLTQNPE*TVMRVYRNPIT Trigger: TGTGATGGGGTTCCTGTAGACTCTCATTACAGTCCACTCTGGGTTCTGTGTTAGAAAGTAATGCCATTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | ATCTCTAGGTTCACCTACCTCAATCATGTTACTTCTTaGCACACACTGGAAATCAGCCCTCACTTATTCACC | + |
|
Preference number: 3 (lower is better) Translates to: ISRFTYLNHVTS*HTLEISPHLFT Trigger: GGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAAGTAACATGATTGAGGTAGGTGAACCTAGAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR-3UTR CAA 90 bp | TACGTTTATCCCAACTGGATTAGCAATGTTTTTCTTCCCATCCCTGCTAACCTACCTTTCTGCTGTTATTaGACAACCCCCACCTTCATG | + |
|
Preference number: 3 (lower is better) Translates to: YVYPNWISNVFLPIPANLPFCCY*TTPTFM Trigger: CATGAAGGTGGGGGTTGTCAAATAACAGCAGAAAGG...TAGGTTAGCAGGGATGGGAAGAAAAACATTGCTAATCCAGTTGGGATAAACGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR GCA 72 bp | TTCTTGCAAATACTGATAGGATGGTTATGCATCTCTTaGAGCAAAGAGTCAGGACTCTACATAGGCTTCCTG | + |
|
Preference number: 3 (lower is better) Translates to: FLQILIGWLCIS*SKESGLYIGFL Trigger: CAGGAAGCCTATGTAGAGTCCTGACTCTTTGCTGCAAGAGATGCATAACCATCCTATCAGTATTTGCAAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| 3UTR-3UTR CAA 90 bp | ACTCTACATAGGCTTCCTGGTCACCAGACTGACTCTCACTTAGATGCAATAATGTTATTGTCCCAGATCTaGTTTAATGAGGGTCTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: TLHRLPGHQTDSHLDAIMLLSQI*FNEGLC Trigger: ACAGAGACCCTCATTAAACAAGATCTGGGACAATAA...CATTATTGCATCTAAGTGAGAGTCAGTCTGGTGACCAGGAAGCCTATGTAGAGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| 3UTR-3UTR CAA 90 bp | GTAAATATCCAAGTGAGACTAACATCAGGCTTAAAGAAAAGGCTCACCTGCCCACCAGCTTATAAACTTTaGGGACATTTCCCAATGAGT | + |
|
Preference number: 3 (lower is better) Translates to: VNIQVRLTSGLKKRLTCPPAYKL*GHFPMS Trigger: ACTCATTGGGAAATGTCCCAAAAGTTTATAAGCTGG...TGGGCAGGTGAGCCTTTTCTTTAAGCCTGATGTTAGTCTCACTTGGATATTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR-3UTR CAA 90 bp | AGGCTTCCTGGTCACCAGACTGACTCTCACTTAGATGCAATAATGTCTTTAATGTCTCAATGCTCCAATTaGAATTGGTACTTGCCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: RLPGHQTDSHLDAIMSLMSQCSN*NWYLPF Trigger: AAAAGGCAAGTACCAATTCAAATTGGAGCATTGAGA...CATTAAAGACATTATTGCATCTAAGTGAGAGTCAGTCTGGTGACCAGGAAGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| 3UTR TCA 72 bp | AGCCAGAAGAAAAGCGTGTTCCACCCTTATTCTGCTTaGCATAAGAAGGTAAATATCCAAGTGAGACTAACA | + |
|
Preference number: 3 (lower is better) Translates to: SQKKSVFHPYSA*HKKVNIQVRLT Trigger: TGTTAGTCTCACTTGGATATTTACCTTCTTATGTCAAGCAGAATAAGGGTGGAACACGCTTTTCTTCTGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR-3UTR CAA 90 bp | TTACTGGAATGTTTTCGGGTAGAGCTGAAGGCAGAAACATTTACAACACTTAGCAAAAGAATGGCATTCTaGCAAATACTGATAGGATGG | + |
|
Preference number: 3 (lower is better) Translates to: LLECFRVELKAETFTTLSKRMAF*QILIGW Trigger: CCATCCTATCAGTATTTGCAAGAATGCCATTCTTTT...GCTAAGTGTTGTAAATGTTTCTGCCTTCAGCTCTACCCGAAAACATTCCAGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| 3UTR TCA 72 bp | CTGTTTGCTATGGAAAGGCTACAATACAATCTCGTATaGACACAAAGAACTGAACTGTGCAGCACTGTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: LFAMERLQYNLV*TQRTELCSTVK Trigger: TTTAACAGTGCTGCACAGTTCAGTTCTTTGTGTTCATACGAGATTGTATTGTAGCCTTTCCATAGCAAACAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CCA 72 bp | CATAAAATATCTATGAGATGTAAATACAAGTCTGTTTaGTCTACAGTGCCGACAGCACACAGAACAGGTGTT | + |
|
Preference number: 3 (lower is better) Translates to: HKISMRCKYKSV*STVPTAHRTGV Trigger: AACACCTGTTCTGTGTGCTGTCGGCACTGTAGACCAAACAGACTTGTATTTACATCTCATAGATATTTTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR-3UTR CAA 90 bp | AAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGAATTGGTACTTGCCTTTTTATTGTCCCAGATCTaGTTTAATGAGGGTCTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: KGDHSIFSMLQFELVLAFLLSQI*FNEGLC Trigger: ACAGAGACCCTCATTAAACAAGATCTGGGACAATAA...AAAGGCAAGTACCAATTCAAATTGGAGCATTGAGAATATCGAATGATCACCTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
||
| 3UTR GCA 72 bp | TTGTTAGTTGGAAAGGTGATCATTCGATATTCTCAATaGTCCAATTTGAATTGGTACTTGCCTTTTAGTTTC | + |
|
Preference number: 3 (lower is better) Translates to: LLVGKVIIRYSQ*SNLNWYLPFSF Trigger: GAAACTAAAAGGCAAGTACCAATTCAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAACTAACAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
||
| CDS-3UTR GCA 90 bp | ATGGCTCTGTGTGCATCTGAGGTCAGTCTGGGTCACACAGTAAGACCGTATCTCCCACGCCACCACATTTaGCTTCGAAGCTGTTTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: MALCASEVSLGHTVRPYLPRHHI*LRSCLD Trigger: ATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGG...GAGATACGGTCTTACTGTGTGACCCAGACTGACCTCAGATGCACACAGAGCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| CDS-3UTR TCA 90 bp | ATCAGGCTTAAAGAAAAGGCTCACCTGCCCAAGCTGGCGCCCACATGTAGTTGTCTGCAGCCAAAGCCATaGTGGCTTTTATTTTGCATC | + |
|
Preference number: 4 (lower is better) Translates to: IRLKEKAHLPKLAPTCSCLQPKP*WLLFCI Trigger: GATGCAAAATAAAAGCCATCATGGCTTTGGCTGCAG...ACAACTACATGTGGGCGCCAGCTTGGGCAGGTGAGCCTTTTCTTTAAGCCTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| CDS-3UTR GCA 90 bp | CATTTGTATGGACTAAGATGGCCCCTTTCTGTGTCTTCTGAGCCACTGCCTTTCCCACGCCACCACATTTaGCTTCGAAGCTGTTTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: HLYGLRWPLSVSSEPLPFPRHHI*LRSCLD Trigger: ATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGG...GAAAGGCAGTGGCTCAGAAGACACAGAAAGGGGCCATCTTAGTCCATACAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CAA 72 bp | GGCACCCACATGCCATACAGAACAGAAAGGTGCCGGTaGCTGCTATCAGAATGGCATTACTTTCTAACACAG | + |
|
Preference number: 4 (lower is better) Translates to: GTHMPYRTERCR*LLSEWHYFLTQ Trigger: CTGTGTTAGAAAGTAATGCCATTCTGATAGCAGCAACCGGCACCTTTCTGTTCTGTATGGCATGTGGGTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| 3UTR CAA 72 bp | TGTGCAGCACTGTTAAACATATACCATCACGAGGCATaGAGAAGCCGGGAAACGGGGTGTGGCACTACATTT | + |
|
Preference number: 4 (lower is better) Translates to: CAALLNIYHHEA*RSRETGCGTTF Trigger: AAATGTAGTGCCACACCCCGTTTCCCGGCTTCTCAATGCCTCGTGATGGTATATGTTTAACAGTGCTGCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| CDS-3UTR TCA 90 bp | TCATGTTACTTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGGTTTGGATCTGTTGCTaGAAGCGGTGGCATTATCCG | + |
|
Preference number: 4 (lower is better) Translates to: SCYFLAHTGNQPSLIHHQVWICC*KRWHYP Trigger: CGGATAATGCCACCGCTTTCAGCAACAGATCCAAAC...CTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAAGTAACATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| CDS-3UTR TCA 90 bp | TGCTCATCTCCCATAATACTCCGTATGTGTCAAAGGCACTTGCCGAAATGGTTAGTTTGGATCTGTTGCTaGAAGCGGTGGCATTATCCG | + |
|
Preference number: 4 (lower is better) Translates to: CSSPIILRMCQRHLPKWLVWICC*KRWHYP Trigger: CGGATAATGCCACCGCTTTCAGCAACAGATCCAAAC...TAACCATTTCGGCAAGTGCCTTTGACACATACGGAGTATTATGGGAGATGAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| CDS-3UTR TCA 90 bp | TCATGTTACTTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGCTGCAGCCAAAGCCATaGTGGCTTTTATTTTGCATC | + |
|
Preference number: 4 (lower is better) Translates to: SCYFLAHTGNQPSLIHHQLQPKP*WLLFCI Trigger: GATGCAAAATAAAAGCCATCATGGCTTTGGCTGCAG...CTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAAGTAACATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| CDS-3UTR TCA 90 bp | ACTCTACATAGGCTTCCTGGTCACCAGACTGACTCTCACTTAGATGCAATAATGCTGCAGCCAAAGCCATaGTGGCTTTTATTTTGCATC | + |
|
Preference number: 4 (lower is better) Translates to: TLHRLPGHQTDSHLDAIMLQPKP*WLLFCI Trigger: GATGCAAAATAAAAGCCATCATGGCTTTGGCTGCAG...CATTATTGCATCTAAGTGAGAGTCAGTCTGGTGACCAGGAAGCCTATGTAGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| CDS-3UTR TCA 90 bp | GTTGGAAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGAATTGGTACTTGGTTTGGATCTGTTGCTaGAAGCGGTGGCATTATCCG | + |
|
Preference number: 4 (lower is better) Translates to: VGKVIIRYSQCSNLNWYLVWICC*KRWHYP Trigger: CGGATAATGCCACCGCTTTCAGCAACAGATCCAAAC...CAAGTACCAATTCAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
||
| CDS-3UTR TCA 90 bp | TTACTGGAATGTTTTCGGGTAGAGCTGAAGGCAGAAACATTTACAACACTTAGCCTGCAGCCAAAGCCATaGTGGCTTTTATTTTGCATC | + |
|
Preference number: 4 (lower is better) Translates to: LLECFRVELKAETFTTLSLQPKP*WLLFCI Trigger: GATGCAAAATAAAAGCCATCATGGCTTTGGCTGCAG...GCTAAGTGTTGTAAATGTTTCTGCCTTCAGCTCTACCCGAAAACATTCCAGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| CDS-3UTR GCA 90 bp | CAGACTGACTCTCACTTAGATGCAATAATGTCTTTAATGCAACTGAAACACAAGCCACGCCACCACATTTaGCTTCGAAGCTGTTTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: QTDSHLDAIMSLMQLKHKPRHHI*LRSCLD Trigger: ATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGG...CTTGTGTTTCAGTTGCATTAAAGACATTATTGCATCTAAGTGAGAGTCAGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| 3UTR CAA 72 bp | ATTCTTGCAAATACTGATAGGATGGTTATGCATCTCTaGCAGCAAAGAGTCAGGACTCTACATAGGCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: ILANTDRMVMHL*QQRVRTLHRLP Trigger: AGGAAGCCTATGTAGAGTCCTGACTCTTTGCTGCAAGAGATGCATAACCATCCTATCAGTATTTGCAAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
||
| CDS-3UTR TCA 90 bp | TTACTTTCTAACACAGAACCCAGAGTGGACTGTAATGAGAGTCTACAGGAACCCGTCCTCTTCTTCATCTaGATCATCTTCCAAAAGATT | + |
|
Preference number: 4 (lower is better) Translates to: LLSNTEPRVDCNESLQEPVLFFI*IIFQKI Trigger: AATCTTTTGGAAGATGATTCAGATGAAGAAGAGGAC...GGGTTCCTGTAGACTCTCATTACAGTCCACTCTGGGTTCTGTGTTAGAAAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
||
| CDS-3UTR TCA 90 bp | TGCATTTTGTTAGTTGGAAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGGTTTGGATCTGTTGCTaGAAGCGGTGGCATTATCCG | + |
|
Preference number: 4 (lower is better) Translates to: CILLVGKVIIRYSQCSNLVWICC*KRWHYP Trigger: CGGATAATGCCACCGCTTTCAGCAACAGATCCAAAC...CAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAACTAACAAAATGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
||
| CDS-3UTR TCA 90 bp | TCTTGTTTAATGAGGGTCTCTGTCATCAAATCAAGTACGGAATTTCACAACTATGTTTGGATCTGTTGCTaGAAGCGGTGGCATTATCCG | + |
|
Preference number: 4 (lower is better) Translates to: SCLMRVSVIKSSTEFHNYVWICC*KRWHYP Trigger: CGGATAATGCCACCGCTTTCAGCAACAGATCCAAAC...ATAGTTGTGAAATTCCGTACTTGATTTGATGACAGAGACCCTCATTAAACAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194810.6 |
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| CDS-3UTR GCA 90 bp | TGCATTTTGTTAGTTGGAAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGCCACGCCACCACATTTaGCTTCGAAGCTGTTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: CILLVGKVIIRYSQCSNLPRHHI*LRSCLD Trigger: ATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGG...CAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAACTAACAAAATGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS-3UTR GCA 90 bp | TCTTGTTTAATGAGGGTCTCTGTCATCAAATCAAGTACGGAATTTCACAACTATCCACGCCACCACATTTaGCTTCGAAGCTGTTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: SCLMRVSVIKSSTEFHNYPRHHI*LRSCLD Trigger: ATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGG...ATAGTTGTGAAATTCCGTACTTGATTTGATGACAGAGACCCTCATTAAACAAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194810.6 |
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| CDS-3UTR TCA 90 bp | TTTGACAACCCCCACCTTCATGTGTTTAGACTGAGTCATGCTCTTACTATCACTGTCCTCTTCTTCATCTaGATCATCTTCCAAAAGATT | + |
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Preference number: 4 (lower is better) Translates to: FDNPHLHVFRLSHALTITVLFFI*IIFQKI Trigger: AATCTTTTGGAAGATGATTCAGATGAAGAAGAGGAC...AGTGATAGTAAGAGCATGACTCAGTCTAAACACATGAAGGTGGGGGTTGTCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR TCA 90 bp | GTTGGAAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGAATTGGTACTTGCTGCAGCCAAAGCCATaGTGGCTTTTATTTTGCATC | + |
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Preference number: 4 (lower is better) Translates to: VGKVIIRYSQCSNLNWYLLQPKP*WLLFCI Trigger: GATGCAAAATAAAAGCCATCATGGCTTTGGCTGCAG...CAAGTACCAATTCAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS-3UTR TCA 90 bp | GTTGGAAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGAATTGGTACTTGGTCCTCTTCTTCATCTaGATCATCTTCCAAAAGATT | + |
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Preference number: 4 (lower is better) Translates to: VGKVIIRYSQCSNLNWYLVLFFI*IIFQKI Trigger: AATCTTTTGGAAGATGATTCAGATGAAGAAGAGGAC...CAAGTACCAATTCAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS-3UTR TCA 90 bp | CAGACTGACTCTCACTTAGATGCAATAATGTCTTTAATGCAACTGAAACACAAGGTCCTCTTCTTCATCTaGATCATCTTCCAAAAGATT | + |
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Preference number: 4 (lower is better) Translates to: QTDSHLDAIMSLMQLKHKVLFFI*IIFQKI Trigger: AATCTTTTGGAAGATGATTCAGATGAAGAAGAGGAC...CTTGTGTTTCAGTTGCATTAAAGACATTATTGCATCTAAGTGAGAGTCAGTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| CDS-3UTR TCA 90 bp | CAACTGAAACACAAGTATGGGGCATTGTTATCAGGGTTCAACTATATATACAAAGTCCTCTTCTTCATCTaGATCATCTTCCAAAAGATT | + |
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Preference number: 4 (lower is better) Translates to: QLKHKYGALLSGFNYIYKVLFFI*IIFQKI Trigger: AATCTTTTGGAAGATGATTCAGATGAAGAAGAGGAC...TTTGTATATATAGTTGAACCCTGATAACAATGCCCCATACTTGTGTTTCAGTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | GCAGCTGAGAGACACAACGTGGTGTGGTCCTTGCTTTATAAGCTCAAACGTACGTCCACGCCACCACATTaGCCTTCGAAGCTGTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: AAERHNVVWSLLYKLKRTSTPPH*PSKLFG Trigger: TCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGA...CGTACGTTTGAGCTTATAAAGCAAGGACCACACCACGTTGTGTCTCTCAGCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR CAA 90 bp | TTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGCATGGTGTGTCCACGCCACCACATTaGCCTTCGAAGCTGTTTGGA | + |
|
Preference number: 5 (lower is better) Translates to: FLAHTGNQPSLIHHQHGVSTPPH*PSKLFG Trigger: TCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGA...CACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR CAA 90 bp | ATGCATCTCTTGCAGCAAAGAGTCAGGACTCTACATAGGCTTCCTGGTCACCAGTCCACGCCACCACATTaGCCTTCGAAGCTGTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: MHLLQQRVRTLHRLPGHQSTPPH*PSKLFG Trigger: TCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGA...CTGGTGACCAGGAAGCCTATGTAGAGTCCTGACTCTTTGCTGCAAGAGATGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | AAATCAGCCCTCACTTATTCACCACCAGCATGGTGTGACTTCTGGGGCACAGCCATGATGGCTTTTATTTaGCATCCACGCCACCACATT | + |
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Preference number: 5 (lower is better) Translates to: KSALTYSPPAWCDFWGTAMMAFI*HPRHHI Trigger: AATGTGGTGGCGTGGATGCAAAATAAAAGCCATCAT...GGCTGTGCCCCAGAAGTCACACCATGCTGGTGGTGAATAAGTGAGGGCTGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR CAA 90 bp | ATCAGGCTTAAAGAAAAGGCTCACCTGCCCAAGCTGGCGCCCACATGTAGTTGTATGATGGCTTTTATTTaGCATCCACGCCACCACATT | + |
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Preference number: 5 (lower is better) Translates to: IRLKEKAHLPKLAPTCSCMMAFI*HPRHHI Trigger: AATGTGGTGGCGTGGATGCAAAATAAAAGCCATCAT...ACAACTACATGTGGGCGCCAGCTTGGGCAGGTGAGCCTTTTCTTTAAGCCTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR CAA 90 bp | TCATGTTACTTCTTGGCACACACTGGAAATCAGCCCTCACTTATTCACCACCAGAGCTGTTTGGATCTGTaGCTGAAAGCGGTGGCATTA | + |
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Preference number: 5 (lower is better) Translates to: SCYFLAHTGNQPSLIHHQSCLDL*LKAVAL Trigger: TAATGCCACCGCTTTCAGCAACAGATCCAAACAGCT...CTGGTGGTGAATAAGTGAGGGCTGATTTCCAGTGTGTGCCAAGAAGTAACATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR CAA 90 bp | CATTTGTATGGACTAAGATGGCCCCTTTCTGTGTCTTCTGAGCCACTGCCTTTCGATAAGCTTTCTGATTaGTCCTGTAGTTCATCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: HLYGLRWPLSVSSEPLPFDKLSD*SCSSSS Trigger: GCTGGATGAACTACAGGACAAATCAGAAAGCTTATC...GAAAGGCAGTGGCTCAGAAGACACAGAAAGGGGCCATCTTAGTCCATACAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR CAA 90 bp | CAAACGTACGTTTATCCCAACTGGATTAGCAATGTTTTTCTTCCCATCCCTGCTTGCCTTCGAAGCTGTTaGGATCTGTTGCTGAAAGCG | + |
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Preference number: 5 (lower is better) Translates to: QTYVYPNWISNVFLPIPACLRSC*DLLLKA Trigger: CGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCA...AGCAGGGATGGGAAGAAAAACATTGCTAATCCAGTTGGGATAAACGTACGTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS TCA 90 bp | ATCCACGCCACCACATTTGCCTTCGAAGCTGTTTGGATCTGTTGCTaGAAGCGGTGGCATTATCCGATAAGCTTTCTTTGTAATATTCTC | + |
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Preference number: 5 (lower is better) Translates to: IHATTFAFEAVWICC*KRWHYPISFLCNIL Trigger: GAGAATATTACAAAGAAAGCTTATCGGATAATGCCACCGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194810.6 |
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| CDS-3UTR CAA 90 bp | ATAAGAATGATAATCATTAGCAAAAGGATCGCTGCAGCCAAAGCCATGATGGCTTGCCTTCGAAGCTGTTaGGATCTGTTGCTGAAAGCG | + |
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Preference number: 5 (lower is better) Translates to: IRMIIISKRIAAAKAMMACLRSC*DLLLKA Trigger: CGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCA...AGCCATCATGGCTTTGGCTGCAGCGATCCTTTTGCTAATGATTATCATTCTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194810.6 |
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| CDS-3UTR CAA 90 bp | TTGTCCCAGATCTTGTTTAATGAGGGTCTCTGTCATCAAATCAAGTACGGAATTTCCACGCCACCACATTaGCCTTCGAAGCTGTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: LSQILFNEGLCHQIKYGISTPPH*PSKLFG Trigger: TCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGA...AATTCCGTACTTGATTTGATGACAGAGACCCTCATTAAACAAGATCTGGGACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194810.6 |
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| CDS-3UTR CAA 90 bp | TTACTTTCTAACACAGAACCCAGAGTGGACTGTAATGAGAGTCTACAGGAACCCGATAAGCTTTCTGATTaGTCCTGTAGTTCATCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLSNTEPRVDCNESLQEPDKLSD*SCSSSS Trigger: GCTGGATGAACTACAGGACAAATCAGAAAGCTTATC...GGGTTCCTGTAGACTCTCATTACAGTCCACTCTGGGTTCTGTGTTAGAAAGTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR CAA 90 bp | AGAATGGCATTCTTGCAAATACTGATAGGATGGTTATGCATCTCTTGCAGCAAATGCCTTCGAAGCTGTTaGGATCTGTTGCTGAAAGCG | + |
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Preference number: 5 (lower is better) Translates to: RMAFLQILIGWLCISCSKCLRSC*DLLLKA Trigger: CGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCA...TTTGCTGCAAGAGATGCATAACCATCCTATCAGTATTTGCAAGAATGCCATTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | GTTGGAAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGAATTGGTACTTGTCCACGCCACCACATTaGCCTTCGAAGCTGTTTGGA | + |
|
Preference number: 5 (lower is better) Translates to: VGKVIIRYSQCSNLNWYLSTPPH*PSKLFG Trigger: TCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGA...CAAGTACCAATTCAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | CAGACTGACTCTCACTTAGATGCAATAATGTCTTTAATGCAACTGAAACACAAGTGCCTTCGAAGCTGTTaGGATCTGTTGCTGAAAGCG | + |
|
Preference number: 5 (lower is better) Translates to: QTDSHLDAIMSLMQLKHKCLRSC*DLLLKA Trigger: CGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCA...CTTGTGTTTCAGTTGCATTAAAGACATTATTGCATCTAAGTGAGAGTCAGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | AAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGAATTGGTACTTGCCTTTTCCACGCCACCACATTaGCCTTCGAAGCTGTTTGGA | + |
|
Preference number: 5 (lower is better) Translates to: KGDHSIFSMLQFELVLAFSTPPH*PSKLFG Trigger: TCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGA...AAAGGCAAGTACCAATTCAAATTGGAGCATTGAGAATATCGAATGATCACCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | TTACTGGAATGTTTTCGGGTAGAGCTGAAGGCAGAAACATTTACAACACTTAGCGATAAGCTTTCTGATTaGTCCTGTAGTTCATCCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLECFRVELKAETFTTLSDKLSD*SCSSSS Trigger: GCTGGATGAACTACAGGACAAATCAGAAAGCTTATC...GCTAAGTGTTGTAAATGTTTCTGCCTTCAGCTCTACCCGAAAACATTCCAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | AATACAATCTCGTATGAACACAAAGAACTGAACTGTGCAGCACTGTTAAACATATGCCTTCGAAGCTGTTaGGATCTGTTGCTGAAAGCG | + |
|
Preference number: 5 (lower is better) Translates to: NTISYEHKELNCAALLNICLRSC*DLLLKA Trigger: CGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCA...TATGTTTAACAGTGCTGCACAGTTCAGTTCTTTGTGTTCATACGAGATTGTATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 |
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| CDS-3UTR CAA 90 bp | TGCATTTTGTTAGTTGGAAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGTGCCTTCGAAGCTGTTaGGATCTGTTGCTGAAAGCG | + |
|
Preference number: 5 (lower is better) Translates to: CILLVGKVIIRYSQCSNLCLRSC*DLLLKA Trigger: CGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCA...CAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAACTAACAAAATGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | TTACTGGAATGTTTTCGGGTAGAGCTGAAGGCAGAAACATTTACAACACTTAGCATGATGGCTTTTATTTaGCATCCACGCCACCACATT | + |
|
Preference number: 5 (lower is better) Translates to: LLECFRVELKAETFTTLSMMAFI*HPRHHI Trigger: AATGTGGTGGCGTGGATGCAAAATAAAAGCCATCAT...GCTAAGTGTTGTAAATGTTTCTGCCTTCAGCTCTACCCGAAAACATTCCAGTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000135241.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | TGCATTTTGTTAGTTGGAAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGGATAAGCTTTCTGATTaGTCCTGTAGTTCATCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: CILLVGKVIIRYSQCSNLDKLSD*SCSSSS Trigger: GCTGGATGAACTACAGGACAAATCAGAAAGCTTATC...CAAATTGGAGCATTGAGAATATCGAATGATCACCTTTCCAACTAACAAAATGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS-3UTR CAA 90 bp | AAAGGTGATCATTCGATATTCTCAATGCTCCAATTTGAATTGGTACTTGCCTTTATGATGGCTTTTATTTaGCATCCACGCCACCACATT | + |
|
Preference number: 5 (lower is better) Translates to: KGDHSIFSMLQFELVLAFMMAFI*HPRHHI Trigger: AATGTGGTGGCGTGGATGCAAAATAAAAGCCATCAT...AAAGGCAAGTACCAATTCAAATTGGAGCATTGAGAATATCGAATGATCACCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS CAA 72 bp | TTGCATCCACGCCACCACATTTGCCTTCGAAGCTGTTaGGATCTGTTGCTGAAAGCGGTGGCATTATCCGAT | + |
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Preference number: 6 (lower is better) Translates to: LHPRHHICLRSC*DLLLKAVALSD Trigger: ATCGGATAATGCCACCGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGATGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 ENSMUST00000194810.6 |
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| CDS CAA 72 bp | CGCCACCACATTTGCCTTCGAAGCTGTTTGGATCTGTaGCTGAAAGCGGTGGCATTATCCGATAAGCTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: RHHICLRSCLDL*LKAVALSDKLS Trigger: AGAAAGCTTATCGGATAATGCCACCGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCAAATGTGGTGGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 ENSMUST00000194810.6 |
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| CDS CAA 90 bp | AGCCAAAGCCATGATGGCTTTTATTTTGCATCCACGCCACCACATTaGCCTTCGAAGCTGTTTGGATCTGTTGCTGAAAGCGGTGGCATT | + |
|
Preference number: 6 (lower is better) Translates to: SQSHDGFYFASTPPH*PSKLFGSVAESGGI Trigger: AATGCCACCGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGATGCAAAATAAAAGCCATCATGGCTTTGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS CAA 90 bp | GCTTTTATTTTGCATCCACGCCACCACATTTGCCTTCGAAGCTGTTaGGATCTGTTGCTGAAAGCGGTGGCATTATCCGATAAGCTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: AFILHPRHHICLRSC*DLLLKAVALSDKLS Trigger: AGAAAGCTTATCGGATAATGCCACCGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGATGCAAAATAAAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS CAA 72 bp | CATGATGGCTTTTATTTTGCATCCACGCCACCACATTaGCCTTCGAAGCTGTTTGGATCTGTTGCTGAAAGC | + |
|
Preference number: 6 (lower is better) Translates to: HDGFYFASTPPH*PSKLFGSVAES Trigger: GCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCAAATGTGGTGGCGTGGATGCAAAATAAAAGCCATCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000050010.11 ENSMUST00000132158.8 ENSMUST00000135241.8 ENSMUST00000150040.8 ENSMUST00000155003.2 |
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| CDS TCA 72 bp | ACCACATTTGCCTTCGAAGCTGTTTGGATCTGTTGCTaGAAGCGGTGGCATTATCCGATAAGCTTTCTTTGT | + |
|
Preference number: 6 (lower is better) Translates to: TTFAFEAVWICC*KRWHYPISFLC Trigger: ACAAAGAAAGCTTATCGGATAATGCCACCGCTTTCAGCAACAGATCCAAACAGCTTCGAAGGCAAATGTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194810.6 |
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