Pregenerated sensors for VAMP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020894Ensembl transcript IDs: ENSMUST00000021273.13, ENSMUST00000117780.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATaGAGCCTAGGGAAGCCTAGACAGGTGGGGTGTTCTGTTTGTTTC | + |
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Preference number: 1 (lower is better) Translates to: GPSGTSLRASQGIQR*SLGKPRQVGCSVCF Trigger: GAAACAAACAGAACACCCCACCTGTCTAGGCTTCCCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR CCA 90 bp | ATCCCTTCCCTCTCAGCCTCAGTTTCTTCAAAGGGACTTGGCAAGTaGGTATTGAGGTCCCTTAAACTCCACGGCTGGACAAAGGGGCAT | + |
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Preference number: 1 (lower is better) Translates to: IPSLSASVSSKGLGK*VLRSLKLHGWTKGH Trigger: ATGCCCCTTTGTCCAGCCGTGGAGTTTAAGGGACCTCAATACCCACTTGCCAAGTCCCTTTGAAGAAACTGAGGCTGAGAGGGAAGGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| 3UTR GCA 90 bp | AGATTAGATCCTTCCTCTATCATTGTACTCAACAAGGAAATAGCTTaGTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGG | + |
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Preference number: 1 (lower is better) Translates to: RLDPSSIIVLNKEIA*FLSHTLSLWAQQPW Trigger: CCAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCCTTGTTGAGTACAATGATAGAGGAAGGATCTAATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGATGGGAGGGAGCGAGACCCCCTGGGAATGTCAGTTGAGTGCCCCACATGGGAGAGACCCCGAGTaGCAGAATTATTGGTCCATC | + |
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Preference number: 2 (lower is better) Translates to: RQMGGSETPWECQLSAPHGRDPE*QNYWSI Trigger: GATGGACCAATAATTCTGCCACTCGGGGTCTCTCCC...ATGTGGGGCACTCAACTGACATTCCCAGGGGGTCTCGCTCCCTCCCATCTGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR TCA 90 bp | GGAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGGGCCCCCAGTTCTCCTaGTGGGAGGAGGCAGCAGAT | + |
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Preference number: 2 (lower is better) Translates to: GNSLLSLSHSLSLGSTALGPQFS*WEEAAD Trigger: ATCTGCTGCCTCCTCCCATCAGGAGAACTGGGGGCC...CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR TCA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGGCTGAAAGATATGGCTaGGAGGTGGAGGAACGGCTG | + |
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Preference number: 2 (lower is better) Translates to: TKWNQSQSLPRDTKMQPRAERYG*EVEERL Trigger: CAGCCGTTCCTCCACCTCTCAGCCATATCTTTCAGC...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR TCA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGTCCAAGGGAGGGGGCTaGAAGATATGGCTGAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: TKWNQSQSLPRDTKMQPRSKGGG*KIWLRG Trigger: ACCTCTCAGCCATATCTTTCAGCCCCCTCCCTTGGA...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR TCA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGGAAGGGACTTGGGGCTaGTCAGGAAAGAGGAAAAGG | + |
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Preference number: 2 (lower is better) Translates to: TKWNQSQSLPRDTKMQPREGTWG*SGKRKR Trigger: CCTTTTCCTCTTTCCTGATCAGCCCCAAGTCCCTTC...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR CCA 90 bp | TTCACACCACAGTTTAGATCTCCTTGGTTCCCCTCCACACAGAAAACCTGGTGTAGCAGATCAGGCAGATaGGAGGGAGCGAGACCCCCT | + |
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Preference number: 2 (lower is better) Translates to: FTPQFRSPWFPSTQKTWCSRSGR*EGARPP Trigger: AGGGGGTCTCGCTCCCTCCCATCTGCCTGATCTGCT...ACACCAGGTTTTCTGTGTGGAGGGGAACCAAGGAGATCTAAACTGTGGTGTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR TCA 90 bp | AGGGCCTGGGATTGTACAGGGAAGATAAGGGAAAGATCGGTTAAATCCAAGGGAAGGGTGAGAGAGAGGTaGTGGGAACCTCAGGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: RAWDCTGKIRERSVKSKGRVRER*WEPQEG Trigger: CCCTTCCTGAGGTTCCCATCACCTCTCTCTCACCCT...TCCCTTGGATTTAACCGATCTTTCCCTTATCTTCCCTGTACAATCCCAGGCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR TCA 90 bp | AGGCAGATGGGAGGGAGCGAGACCCCCTGGGAATGTCAGTTGAGTGCCCCACATAAAAACACAGAAGAGTaGAGAGTGATGGATCAGAAA | + |
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Preference number: 2 (lower is better) Translates to: RQMGGSETPWECQLSAPHKNTEE*RVMDQK Trigger: TTTCTGATCCATCACTCTTCACTCTTCTGTGTTTTT...ATGTGGGGCACTCAACTGACATTCCCAGGGGGTCTCGCTCCCTCCCATCTGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR CCA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGTGTTTTGGGAGGGCCTaGGATTGTACAGGGAAGATA | + |
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Preference number: 2 (lower is better) Translates to: TKWNQSQSLPRDTKMQPRCFGRA*DCTGKI Trigger: TATCTTCCCTGTACAATCCCAGGCCCTCCCAAAACA...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR CCA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGGGTTTGCTTTTGTTTTaGGAGGGCCTGGGATTGTAC | + |
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Preference number: 2 (lower is better) Translates to: TKWNQSQSLPRDTKMQPRGLLLF*EGLGLY Trigger: GTACAATCCCAGGCCCTCCCAAAACAAAAGCAAACC...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR CAA 90 bp | ACTGGGGAGCAGGAATGTAGGGAGAGACCCCGAGTGGCAGAATTATaGGTCCATCATAACACACTGAACTCCAAGACACTTACACACCAG | + |
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Preference number: 2 (lower is better) Translates to: TGEQECRERPRVAEL*VHHNTLNSKTLTHQ Trigger: CTGGTGTGTAAGTGTCTTGGAGTTCAGTGTGTTATGATGGACCAATAATTCTGCCACTCGGGGTCTCTCCCTACATTCCTGCTCCCCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR TCA 90 bp | TTCACACCACAGTTTAGATCTCCTTGGTTCCCCTCCACACAGAAAACCTGGTGTCATAGCAGATGCAAATaGAGGGACTTGGGGCTGATC | + |
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Preference number: 2 (lower is better) Translates to: FTPQFRSPWFPSTQKTWCHSRCK*RDLGLI Trigger: GATCAGCCCCAAGTCCCTTCATTTGCATCTGCTATG...ACACCAGGTTTTCTGTGTGGAGGGGAACCAAGGAGATCTAAACTGTGGTGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR TCA 90 bp | TTCACACCACAGTTTAGATCTCCTTGGTTCCCCTCCACACAGAAAACCTGGTGTCCTGGGAATGTCAGTTaGGTGCCCCACATGAAAACT | + |
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Preference number: 2 (lower is better) Translates to: FTPQFRSPWFPSTQKTWCPGNVS*VPHMKT Trigger: AGTTTTCATGTGGGGCACTCAACTGACATTCCCAGG...ACACCAGGTTTTCTGTGTGGAGGGGAACCAAGGAGATCTAAACTGTGGTGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR GCA 90 bp | AGGGCCTGGGATTGTACAGGGAAGATAAGGGAAAGATCGGTTAAATCCAAGGGAGAGGAGAGGGGCTATTaGATAGCAGATGCAAATGAA | + |
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Preference number: 2 (lower is better) Translates to: RAWDCTGKIRERSVKSKGEERGY*IADANE Trigger: TTCATTTGCATCTGCTATGCAATAGCCCCTCTCCTC...TCCCTTGGATTTAACCGATCTTTCCCTTATCTTCCCTGTACAATCCCAGGCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR CCA 90 bp | GGCAGACTCCTCAGGGATTTAAGTGCTGAAGTAAACTGTGGAGAGAGGGCAAGAGTAGCTTTCAAACAGTaGAGTAAGTGGTATCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: GRLLRDLSAEVNCGERARVAFKQ*SKWYPG Trigger: ACCAGGATACCACTTACTCCACTGTTTGAAAGCTAC...TCTTGCCCTCTCTCCACAGTTTACTTCAGCACTTAAATCCCTGAGGAGTCTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAAAGATCGGTTAAATCCAAGGGAAGGAGGAGAGGGGCTATTGCATAGCAGATGTATAAATAACAGCTaGCTATTTACAGGGGGCACA | + |
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Preference number: 2 (lower is better) Translates to: GKDRLNPREGGEGLLHSRCINNS*LFTGGT Trigger: TGTGCCCCCTGTAAATAGCCAGCTGTTATTTATACA...TCTGCTATGCAATAGCCCCTCTCCTCCTTCCCTTGGATTTAACCGATCTTTCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR CAA 90 bp | AAGATTAGATCCTTCCTCTATCATTGTACTCAACAAGGAAATAGCTaGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: KIRSFLYHCTQQGNS*LSLSHSLSLGSTAL Trigger: CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCCTTGTTGAGTACAATGATAGAGGAAGGATCTAATCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR CCA 72 bp | CACACTGGAGCCACCCCTCCTCAAAGAACCAGATTGTaGTCGGCCCCCAGTTCTCCTGATGGGAGGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: HTGATPPQRTRL*SAPSSPDGRRQ Trigger: CTGCCTCCTCCCATCAGGAGAACTGGGGGCCGACCACAATCTGGTTCTTTGAGGAGGGGTGGCTCCAGTGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR GCA 72 bp | GGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATaGAGCCTAGGGAAGCCTAGACAGGTGGGGTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: GTSLRASQGIQR*SLGKPRQVGCS Trigger: AGAACACCCCACCTGTCTAGGCTTCCCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR CCA 72 bp | GAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTaGGCTCAACAGCCCTGGAGAAGGACGAGGATCCCC | + |
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Preference number: 3 (lower is better) Translates to: EIACFLSHTLSL*AQQPWRRTRIP Trigger: GGGGATCCTCGTCCTTCTCCAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR CAA 90 bp | GGAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGTGGGAGGGCCTGGGATaGTACAGGGAAGATAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: GNSLLSLSHSLSLGSTALWEGLG*YREDKG Trigger: TCCCTTATCTTCCCTGTACAATCCCAGGCCCTCCCA...CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR CAA 90 bp | GGAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGCTGTGGGGTTTGCTTTaGTTTTGGGAGGGCCTGGGA | + |
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Preference number: 3 (lower is better) Translates to: GNSLLSLSHSLSLGSTALLWGLL*FWEGLG Trigger: TCCCAGGCCCTCCCAAAACAAAAGCAAACCCCACAG...CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR-3UTR CAA 90 bp | GGAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGACTAGACTAGAGGGGTaGGGAGGAGGAAACCTTGGG | + |
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Preference number: 3 (lower is better) Translates to: GNSLLSLSHSLSLGSTALTRLEG*GGGNLG Trigger: CCCAAGGTTTCCTCCTCCCAACCCCTCTAGTCTAGT...CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR CCA 72 bp | GGGTATGTGACGGTAGCTTTCAAACAGTGGAGTAAGTaGTATCCTGGTGGTTGGTGTTCGAGACCTCACCCT | + |
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Preference number: 3 (lower is better) Translates to: GYVTVAFKQWSK*YPGGWCSRPHP Trigger: AGGGTGAGGTCTCGAACACCAACCACCAGGATACCACTTACTCCACTGTTTGAAAGCTACCGTCACATACCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| 3UTR CCA 72 bp | CTCTCAGCCTCAGTTTCTTCAAAGGGACTTGGCAAGTaGGTATTGAGGTCCCTTAAACTCCACGGCTGGACA | + |
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Preference number: 3 (lower is better) Translates to: LSASVSSKGLGK*VLRSLKLHGWT Trigger: TGTCCAGCCGTGGAGTTTAAGGGACCTCAATACCCACTTGCCAAGTCCCTTTGAAGAAACTGAGGCTGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| 3UTR CCA 72 bp | GCTTTCAAACAGTGGAGTAAGTGGTATCCTGGTGGTTaGTGTTCGAGACCTCACCCTTTCCTGTCTCCTACT | + |
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Preference number: 3 (lower is better) Translates to: AFKQWSKWYPGG*CSRPHPFLSPT Trigger: AGTAGGAGACAGGAAAGGGTGAGGTCTCGAACACCAACCACCAGGATACCACTTACTCCACTGTTTGAAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| 3UTR-3UTR CAA 90 bp | TTCACACCACAGTTTAGATCTCCTTGGTTCCCCTCCACACAGAAAACCTGGTGTGGGTTTGCTTTTGTTTaGGGAGGGCCTGGGATTGTA | + |
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Preference number: 3 (lower is better) Translates to: FTPQFRSPWFPSTQKTWCGFAFV*GGPGIV Trigger: TACAATCCCAGGCCCTCCCAAAACAAAAGCAAACCC...ACACCAGGTTTTCTGTGTGGAGGGGAACCAAGGAGATCTAAACTGTGGTGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| 3UTR GCA 72 bp | CCTTCCTCTATCATTGTACTCAACAAGGAAATAGCTTaGTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAA | + |
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Preference number: 3 (lower is better) Translates to: PSSIIVLNKEIA*FLSHTLSLWAQ Trigger: TTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCCTTGTTGAGTACAATGATAGAGGAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR CCA 90 bp | GAGAAAGAGAAAGAAAGCAGTGTGTCAGGCCTGGCCCTGTTCCAAGCCTCCCCAAGGGGCCCTGGCCTCTaGCCCCACTCACCGATGATG | + |
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Preference number: 4 (lower is better) Translates to: EKEKESSVSGLALFQASPRGPGL*PHSPMM Trigger: CATCATCGGTGAGTGGGGCCAGAGGCCAGGGCCCCT...TGGGGAGGCTTGGAACAGGGCCAGGCCTGACACACTGCTTTCTTTCTCTTTCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| CDS-3UTR CCA 90 bp | GGAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGTGGGAGGCCCCTGCCTaGAGGGCATCTGCACGGTCA | + |
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Preference number: 4 (lower is better) Translates to: GNSLLSLSHSLSLGSTALWEAPA*RASARS Trigger: TGACCGTGCAGATGCCCTCCAGGCAGGGGCCTCCCA...CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR CCA 90 bp | AAACAGTGGAGTAAGTGGTATCCTGGTGGTTGGTGTTCGAGACCTCACCCTTTCTGGGAGGCCCCTGCCTaGAGGGCATCTGCACGGTCA | + |
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Preference number: 4 (lower is better) Translates to: KQWSKWYPGGWCSRPHPFWEAPA*RASARS Trigger: TGACCGTGCAGATGCCCTCCAGGCAGGGGCCTCCCA...GAAAGGGTGAGGTCTCGAACACCAACCACCAGGATACCACTTACTCCACTGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| CDS-3UTR CCA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGGCACTTGTTTCAAACTaGGAGGCCCCTGCCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: TKWNQSQSLPRDTKMQPRALVSN*EAPAWR Trigger: CCTCCAGGCAGGGGCCTCCCAGTTTGAAACAAGTGC...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR GCA 90 bp | TCCCCAGATGGAGCTTTTAGGCTCAAAGGGTTCCTAGACGAACACCAGGACCCCTGGGCCTGGGTCTGCTaGAGTCTCCTGTTACTAGTA | + |
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Preference number: 4 (lower is better) Translates to: SPDGAFRLKGFLDEHQDPWAWVC*SLLLLV Trigger: TACTAGTAACAGGAGACTGCAGCAGACCCAGGCCCA...GGGGTCCTGGTGTTCGTCTAGGAACCCTTTGAGCCTAAAAGCTCCATCTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| CDS-3UTR GCA 90 bp | GGGAAAGATCGGTTAAATCCAAGGGAAGGAGGAGAGGGGCTATTGCATAGCAGATGCCTGGAGGGCATCTaGACGGTCATCCAGCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: GKDRLNPREGGEGLLHSRCLEGI*TVIQLR Trigger: TCGGAGCTGGATGACCGTGCAGATGCCCTCCAGGCA...TCTGCTATGCAATAGCCCCTCTCCTCCTTCCCTTGGATTTAACCGATCTTTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR GCA 90 bp | AAACAGTGGAGTAAGTGGTATCCTGGTGGTTGGTGTTCGAGACCTCACCCTTTCTGCCTGGAGGGCATCTaGACGGTCATCCAGCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: KQWSKWYPGGWCSRPHPFCLEGI*TVIQLR Trigger: TCGGAGCTGGATGACCGTGCAGATGCCCTCCAGGCA...GAAAGGGTGAGGTCTCGAACACCAACCACCAGGATACCACTTACTCCACTGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| CDS-3UTR CCA 90 bp | GGATTCTTAGGACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGAACCACCTCATCCACCTaGGCCTGGGTCTGCTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: GFLGPSGTSLRASQGIQRTTSST*AWVCCS Trigger: ACTGCAGCAGACCCAGGCCCAGGTGGATGAGGTGGT...TCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGTCCTAAGAATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR CCA 90 bp | GGCAGACTCCTCAGGGATTTAAGTGCTGAAGTAAACTGTGGAGAGAGGGCAAGAACCACCTCATCCACCTaGGCCTGGGTCTGCTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: GRLLRDLSAEVNCGERARTTSST*AWVCCS Trigger: ACTGCAGCAGACCCAGGCCCAGGTGGATGAGGTGGT...TCTTGCCCTCTCTCCACAGTTTACTTCAGCACTTAAATCCCTGAGGAGTCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| CDS-3UTR TCA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGCCACATTCACCCTCATaGTGTCCACCACCTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: TKWNQSQSLPRDTKMQPRPHSPS*CPPPHP Trigger: TGGATGAGGTGGTGGACATCATGAGGGTGAATGTGG...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR TCA 90 bp | TCAAACAGTGGAGTAAGTGGTATCCTGGTGGTTGGTGTTCGAGACCTCACCCTTCCACATTCACCCTCATaGTGTCCACCACCTCATCCA | + |
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Preference number: 4 (lower is better) Translates to: SNSGVSGILVVGVRDLTLPHSPS*CPPPHP Trigger: TGGATGAGGTGGTGGACATCATGAGGGTGAATGTGG...AAGGGTGAGGTCTCGAACACCAACCACCAGGATACCACTTACTCCACTGTTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| CDS-3UTR GCA 90 bp | GGAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGGCGCTTGAGCTTGGCTaGACTTGTTTCAAACTGGGA | + |
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Preference number: 4 (lower is better) Translates to: GNSLLSLSHSLSLGSTALALELG*TCFKLG Trigger: TCCCAGTTTGAAACAAGTGCAGCCAAGCTCAAGCGC...CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR TCA 90 bp | GGAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGACCAGTATTTGCGCTTaGGCTTGGCTGCACTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: GNSLLSLSHSLSLGSTALTSICA*AWLHLF Trigger: AAACAAGTGCAGCCAAGCTCAAGCGCAAATACTGGT...CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR GCA 90 bp | TTCACACCACAGTTTAGATCTCCTTGGTTCCCCTCCACACAGAAAACCTGGTGTTGGGCCTGGGTCTGCTaGAGTCTCCTGTTACTAGTA | + |
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Preference number: 4 (lower is better) Translates to: FTPQFRSPWFPSTQKTWCWAWVC*SLLLLV Trigger: TACTAGTAACAGGAGACTGCAGCAGACCCAGGCCCA...ACACCAGGTTTTCTGTGTGGAGGGGAACCAAGGAGATCTAAACTGTGGTGTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR TCA 90 bp | AAACAGTGGAGTAAGTGGTATCCTGGTGGTTGGTGTTCGAGACCTCACCCTTTCACCAGTATTTGCGCTTaGGCTTGGCTGCACTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: KQWSKWYPGGWCSRPHPFTSICA*AWLHLF Trigger: AAACAAGTGCAGCCAAGCTCAAGCGCAAATACTGGT...GAAAGGGTGAGGTCTCGAACACCAACCACCAGGATACCACTTACTCCACTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| 3UTR CAA 72 bp | CCACCCGGTATTCCTAGTCCCAAAATCTTAACCGGATaGACCCATAACCAGGGAAAGCAGGGCTATACAACA | + |
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Preference number: 4 (lower is better) Translates to: PPGIPSPKILTG*THNQGKQGYTT Trigger: TGTTGTATAGCCCTGCTTTCCCTGGTTATGGGTCAATCCGGTTAAGATTTTGGGACTAGGAATACCGGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| 3UTR CAA 72 bp | TCCTTCCTCTATCATTGTACTCAACAAGGAAATAGCTaGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SFLYHCTQQGNS*LSLSHSLSLGS Trigger: TGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCCTTGTTGAGTACAATGATAGAGGAAGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR CAA 90 bp | GAGAAAGAGAAAGAAAGCAGTGTGTCAGGCCTGGCCCTGTTCCAAGCCTCCCCACACCAGTATTTGCGCTaGAGCTTGGCTGCACTTGTT | + |
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Preference number: 5 (lower is better) Translates to: EKEKESSVSGLALFQASPHQYLR*SLAALV Trigger: AACAAGTGCAGCCAAGCTCAAGCGCAAATACTGGTG...TGGGGAGGCTTGGAACAGGGCCAGGCCTGACACACTGCTTTCTTTCTCTTTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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| CDS-3UTR CAA 90 bp | GGAAATAGCTTGCTTTCTCTCTCACACTCTCTCTCTCTGGGCTCAACAGCCCTGCACCAGTATTTGCGCTaGAGCTTGGCTGCACTTGTT | + |
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Preference number: 5 (lower is better) Translates to: GNSLLSLSHSLSLGSTALHQYLR*SLAALV Trigger: AACAAGTGCAGCCAAGCTCAAGCGCAAATACTGGTG...CAGGGCTGTTGAGCCCAGAGAGAGAGAGTGTGAGAGAGAAAGCAAGCTATTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR CAA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGTTTTTCCACCAGTATTaGCGCTTGAGCTTGGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: TKWNQSQSLPRDTKMQPRFFHQY*RLSLAA Trigger: TGCAGCCAAGCTCAAGCGCAAATACTGGTGGAAAAA...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR CAA 90 bp | ACCAAGTGGAACCAGTCTCAGAGCCTCCCAAGGGATACAAAGATGCAGCCTAGGTATTTGCGCTTGAGCTaGGCTGCACTTGTTTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: TKWNQSQSLPRDTKMQPRYLRLS*AALVSN Trigger: GTTTGAAACAAGTGCAGCCAAGCTCAAGCGCAAATA...CCTAGGCTGCATCTTTGTATCCCTTGGGAGGCTCTGAGACTGGTTCCACTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021273.13 |
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| CDS-3UTR CAA 90 bp | TCAAACAGTGGAGTAAGTGGTATCCTGGTGGTTGGTGTTCGAGACCTCACCCTTTATTTGCGCTTGAGCTaGGCTGCACTTGTTTCAAAC | + |
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Preference number: 5 (lower is better) Translates to: SNSGVSGILVVGVRDLTLYLRLS*AALVSN Trigger: GTTTGAAACAAGTGCAGCCAAGCTCAAGCGCAAATA...AAGGGTGAGGTCTCGAACACCAACCACCAGGATACCACTTACTCCACTGTTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117780.2 |
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