Pregenerated sensors for V1RG10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000098947Ensembl transcript IDs: ENSMUST00000183378.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACTTGTCTCTTATGTCTGTAGAGAATACTAACCATGGAGATACTTaGGCAGGCCATGAGACCCAGACAGAAGACATCAGAGAAGCACAC | + |
|
Preference number: 1 (lower is better) Translates to: DLSLMSVENTNHGDT*AGHETQTEDIREAH Trigger: GTGTGCTTCTCTGATGTCTTCTGTCTGGGTCTCATGGCCTGCTCAAGTATCTCCATGGTTAGTATTCTCTACAGACATAAGAGACAAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR-3UTR TCA 90 bp | AGGATGAGGATAGTTTGGGTGGCTCTGTCTTCAGGTGAGACTTTCAGAAAGTGTGGTGCACGAGCCAACTaGCTGAGCAGGAGGGACCAA | + |
|
Preference number: 2 (lower is better) Translates to: RMRIVWVALSSGETFRKCGARAN*LSRRDQ Trigger: TTGGTCCCTCCTGCTCAGTCAGTTGGCTCGTGCACC...ACACTTTCTGAAAGTCTCACCTGAAGACAGAGCCACCCAAACTATCCTCATCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR CAA 90 bp | AGCAGGTGCACGAGCCAACTGACTGAGCAGGAGGGACCAATGTACTaGGTTGCTCTGTATTTAAGCTTTATCCACCTGGAGTTATTGGGG | + |
|
Preference number: 2 (lower is better) Translates to: SRCTSQLTEQEGPMY*VALYLSFIHLELLG Trigger: CCCCAATAACTCCAGGTGGATAAAGCTTAAATACAGAGCAACCAAGTACATTGGTCCCTCCTGCTCAGTCAGTTGGCTCGTGCACCTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR-3UTR TCA 90 bp | AGGATGAGGATAGTTTGGGTGGCTCTGTCTTCAGGTGAGACTTTCAGAAAGTGTTACTTGAGCAGGCCATaGGACCCAGACAGAAGACAT | + |
|
Preference number: 2 (lower is better) Translates to: RMRIVWVALSSGETFRKCYLSRP*DPDRRH Trigger: ATGTCTTCTGTCTGGGTCTCATGGCCTGCTCAAGTA...ACACTTTCTGAAAGTCTCACCTGAAGACAGAGCCACCCAAACTATCCTCATCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR-3UTR TCA 90 bp | AGGATGAGGATAGTTTGGGTGGCTCTGTCTTCAGGTGAGACTTTCAGAAAGTGTGTCAGAAGCAAACAATaGGCAGTATCCATAACTCAA | + |
|
Preference number: 2 (lower is better) Translates to: RMRIVWVALSSGETFRKCVRSKQ*AVSITQ Trigger: TTGAGTTATGGATACTGCTCATTGTTTGCTTCTGAC...ACACTTTCTGAAAGTCTCACCTGAAGACAGAGCCACCCAAACTATCCTCATCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR-3UTR GCA 90 bp | AGCAGGATGAGGATAGTTTGGGTGGCTCTGTCTTCAGGTGAGACTTTCAGAAAGTTTTCTTGTAATTGGTaGCTGATTCTCTTAGTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: SRMRIVWVALSSGETFRKFSCNW*LILLVE Trigger: CTCCACTAAGAGAATCAGGCACCAATTACAAGAAAA...CTTTCTGAAAGTCTCACCTGAAGACAGAGCCACCCAAACTATCCTCATCCTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR-3UTR CCA 90 bp | AGGATGAGGATAGTTTGGGTGGCTCTGTCTTCAGGTGAGACTTTCAGAAAGTGTCATTTTTCTTGTAATTaGTGCCTGATTCTCTTAGTG | + |
|
Preference number: 2 (lower is better) Translates to: RMRIVWVALSSGETFRKCHFSCN*CLILLV Trigger: CACTAAGAGAATCAGGCACCAATTACAAGAAAAATG...ACACTTTCTGAAAGTCTCACCTGAAGACAGAGCCACCCAAACTATCCTCATCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR TCA 72 bp | CTTATGTCTGTAGAGAATACTAACCATGGAGATACTTaGGCAGGCCATGAGACCCAGACAGAAGACATCAGA | + |
|
Preference number: 3 (lower is better) Translates to: LMSVENTNHGDT*AGHETQTEDIR Trigger: TCTGATGTCTTCTGTCTGGGTCTCATGGCCTGCTCAAGTATCTCCATGGTTAGTATTCTCTACAGACATAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR TCA 72 bp | GTGGCTCTGTCTTCAGGTGAGACTTTCAGAAAGTGTTaGGCACTGTGGATATGCTTGACTTGTCTCTTATGT | + |
|
Preference number: 3 (lower is better) Translates to: VALSSGETFRKC*ALWICLTCLLC Trigger: ACATAAGAGACAAGTCAAGCATATCCACAGTGCTCAACACTTTCTGAAAGTCTCACCTGAAGACAGAGCCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR CAA 72 bp | TTTCAGAAAGTGTTGAGCACTGTGGATATGCTTGACTaGTCTCTTATGTCTGTAGAGAATACTAACCATGGA | + |
|
Preference number: 4 (lower is better) Translates to: FQKVLSTVDMLD*SLMSVENTNHG Trigger: TCCATGGTTAGTATTCTCTACAGACATAAGAGACAAGTCAAGCATATCCACAGTGCTCAACACTTTCTGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||
| 3UTR CAA 72 bp | AGAAGTTATCTCTTACCTAAGCAGGGTAAAAACAGATaGGAACTAGATCTCATATTGGTGATGAGAACAAAG | + |
|
Preference number: 4 (lower is better) Translates to: RSYLLPKQGKNR*ELDLILVMRTK Trigger: CTTTGTTCTCATCACCAATATGAGATCTAGTTCCAATCTGTTTTTACCCTGCTTAGGTAAGAGATAACTTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000183378.3 |
||