Pregenerated sensors for V1RD19 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092456Ensembl transcript IDs: ENSMUST00000173571.2, ENSMUST00000236162.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGTCAGATTTTAGGTTTTGTCATACTGACTGCTATAACCACTCCTaGTACTTATCTTGTGAGTTCTGCTGCCTTTGGACATTCTCATGC | + |
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Preference number: 1 (lower is better) Translates to: KSDFRFCHTDCYNHS*YLSCEFCCLWTFSC Trigger: GCATGAGAATGTCCAAAGGCAGCAGAACTCACAAGATAAGTATCAGGAGTGGTTATAGCAGTCAGTATGACAAAACCTAAAATCTGACTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGATACTTATCTTGTGAGTTCTGCTGCCTTTGGACATTCTCATGCATCCAAACACTATGGCCCAGAGTaGAGACATTGCCAAGACCTT | + |
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Preference number: 2 (lower is better) Translates to: PDTYLVSSAAFGHSHASKHYGPE*RHCQDL Trigger: AAGGTCTTGGCAATGTCTTCACTCTGGGCCATAGTG...TTTGGATGCATGAGAATGTCCAAAGGCAGCAGAACTCACAAGATAAGTATCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGATACTTATCTTGTGAGTTCTGCTGCCTTTGGACATTCTCATGCATCCAAACTTCTCAAGAGAGGATaGAGTGATGTTGTTCAATGG | + |
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Preference number: 2 (lower is better) Translates to: PDTYLVSSAAFGHSHASKLLKRG*SDVVQW Trigger: CCATTGAACAACATCACTTCATCCTCTCTTGAGAAG...TTTGGATGCATGAGAATGTCCAAAGGCAGCAGAACTCACAAGATAAGTATCAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| 3UTR TCA 72 bp | GATGTCCAGTGTGGATCCTGGTATCTTCTGTGGTCCTaGGACTTTAAACCTCCTAAGGCTCCCGAGCGTGAG | + |
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Preference number: 3 (lower is better) Translates to: DVQCGSWYLLWS*DFKPPKAPERE Trigger: CTCACGCTCGGGAGCCTTAGGAGGTTTAAAGTCTCAGGACCACAGAAGATACCAGGATCCACACTGGACATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| 3UTR CCA 72 bp | TTGTTTCCTGTCGCATGCGTAGGTGTTTCTGATGATTaGAAACACAATTTCACTATGGCCCAGAGTGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: LFPVACVGVSDD*KHNFTMAQSED Trigger: GTCTTCACTCTGGGCCATAGTGAAATTGTGTTTCCAATCATCAGAAACACCTACGCATGCGACAGGAAACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| 3UTR TCA 72 bp | GTAGAGTGCAGTTATATACCAGAGAATGGAGGGTGGTaGATAACTCACTGTTTCAATCAGATTCCAACCAGA | + |
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Preference number: 3 (lower is better) Translates to: VECSYIPENGGW*ITHCFNQIPTR Trigger: TCTGGTTGGAATCTGATTGAAACAGTGAGTTATTCACCACCCTCCATTCTCTGGTATATAACTGCACTCTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| 3UTR-3UTR CAA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCAGCTGTCTTCTGTGTTaGGCATTTTTAGTGACTCTG | + |
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Preference number: 3 (lower is better) Translates to: VIITLLFYKYSSEHHTLFSCLLC*AFLVTL Trigger: CAGAGTCACTAAAAATGCCAAACACAGAAGACAGCT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| 3UTR-3UTR CAA 90 bp | CAATACATCCTTATTTGTTCAGATGTAGAACTATGGAGGGATTCTGTTGTTATCAGCTGTCTTCTGTGTTaGGCATTTTTAGTGACTCTG | + |
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Preference number: 3 (lower is better) Translates to: QYILICSDVELWRDSVVISCLLC*AFLVTL Trigger: CAGAGTCACTAAAAATGCCAAACACAGAAGACAGCT...GATAACAACAGAATCCCTCCATAGTTCTACATCTGAACAAATAAGGATGTATTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR GCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCGGTTGCTGTGGTCTCTaGTTGGCCCCTGGGGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFGCCGL*LAPGVL Trigger: CAGGACCCCAGGGGCCAAGCAGAGACCACAGCAACC...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR GCA 90 bp | CAATACATCCTTATTTGTTCAGATGTAGAACTATGGAGGGATTCTGTTGTTATCGGTTGCTGTGGTCTCTaGTTGGCCCCTGGGGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: QYILICSDVELWRDSVVIGCCGL*LAPGVL Trigger: CAGGACCCCAGGGGCCAAGCAGAGACCACAGCAACC...GATAACAACAGAATCCCTCCATAGTTCTACATCTGAACAAATAAGGATGTATTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| 3UTR CAA 72 bp | GGAAACACAATTTCACTATGGCCCAGAGTGAAGACATaGCCAAGACCTTTCAGGAGAAGATGTCCAGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: GNTISLWPRVKT*PRPFRRRCPVW Trigger: CCACACTGGACATCTTCTCCTGAAAGGTCTTGGCAATGTCTTCACTCTGGGCCATAGTGAAATTGTGTTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| 3UTR CAA 72 bp | TTTAAACCTCCTAAGGCTCCCGAGCGTGAGCTGCTTTaGCCTACTTTTCTCTTTATTCTTGATGTTGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: FKPPKAPERELL*PTFLFILDVVR Trigger: CCTCACAACATCAAGAATAAAGAGAAAAGTAGGCAAAAGCAGCTCACGCTCGGGAGCCTTAGGAGGTTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR CCA 90 bp | TTCAGTAGAGTGCAGTTATATACCAGAGAATGGAGGGTGGTGAATAACTCACTGAAGCCACTTCCTCAGTaGTTTTCAGGGATGTATCGT | + |
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Preference number: 4 (lower is better) Translates to: FSRVQLYTREWRVVNNSLKPLPQ*FSGMYR Trigger: ACGATACATCCCTGAAAACCACTGAGGAAGTGGCTT...CAGTGAGTTATTCACCACCCTCCATTCTCTGGTATATAACTGCACTCTACTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR TCA 90 bp | CCTGATACTTATCTTGTGAGTTCTGCTGCCTTTGGACATTCTCATGCATCCAAAAGACAATGCCTACACTaGAATCAGAAGTGGAACAGA | + |
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Preference number: 4 (lower is better) Translates to: PDTYLVSSAAFGHSHASKRQCLH*NQKWNR Trigger: TCTGTTCCACTTCTGATTTCAGTGTAGGCATTGTCT...TTTGGATGCATGAGAATGTCCAAAGGCAGCAGAACTCACAAGATAAGTATCAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR TCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCTGGCCCCTGGGGTCCTaGTTGAGAGTGAATATGTAC | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFWPLGS*LRVNMY Trigger: GTACATATTCACTCTCAATCAGGACCCCAGGGGCCA...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR GCA 90 bp | TTTAGACTAGCCTTCAGTAGAGTGCAGTTATATACCAGAGAATGGAGGGTGGTGCATGTTTGTGACACTTaGTCTGAGTATTCCTTTACC | + |
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Preference number: 4 (lower is better) Translates to: FRLAFSRVQLYTREWRVVHVCDT*SEYSFT Trigger: GGTAAAGGAATACTCAGAGCAAGTGTCACAAACATG...CACCACCCTCCATTCTCTGGTATATAACTGCACTCTACTGAAGGCTAGTCTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR GCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCCAGGATAGTATGGGTTaGTGTGGTCTCTGCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFQDSMG*CGLCLA Trigger: GGCCAAGCAGAGACCACAGCAACCCATACTATCCTG...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR TCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCCAAAGCAAGATGATCTaGAAAGCCACTTCCTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFQSKMI*KATSSV Trigger: CACTGAGGAAGTGGCTTTTCAGATCATCTTGCTTTG...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR TCA 90 bp | CAATACATCCTTATTTGTTCAGATGTAGAACTATGGAGGGATTCTGTTGTTATCCAAAGCAAGATGATCTaGAAAGCCACTTCCTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: QYILICSDVELWRDSVVIQSKMI*KATSSV Trigger: CACTGAGGAAGTGGCTTTTCAGATCATCTTGCTTTG...GATAACAACAGAATCCCTCCATAGTTCTACATCTGAACAAATAAGGATGTATTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR TCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCACTGGCAAAGCAAGATaGTCTGAAAAGCCACTTCCT | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFTGKAR*SEKPLP Trigger: AGGAAGTGGCTTTTCAGATCATCTTGCTTTGCCAGT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCAAGCCACTTCCTCAGTaGTTTTCAGGGATGTATCGT | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFKPLPQ*FSGMYR Trigger: ACGATACATCCCTGAAAACCACTGAGGAAGTGGCTT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCAGAGAGTTAAGGCATTaGCCACAGCCATGTGTCTTA | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFRELRH*PQPCVL Trigger: TAAGACACATGGCTGTGGCCAATGCCTTAACTCTCT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR TCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCAGACAATGCCTACACTaGAATCAGAAGTGGAACAGA | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFRQCLH*NQKWNR Trigger: TCTGTTCCACTTCTGATTTCAGTGTAGGCATTGTCT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR GCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCCATGTTTGTGACACTTaGTCTGAGTATTCCTTTACC | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFHVCDT*SEYSFT Trigger: GGTAAAGGAATACTCAGAGCAAGTGTCACAAACATG...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCCAAAGAGAAATACATTaGCAAAAGTCCCAACCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFQREIH*QKSQPQ Trigger: TTGGGGTTGGGACTTTTGCCAATGTATTTCTCTTTG...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CCA 90 bp | CAATACATCCTTATTTGTTCAGATGTAGAACTATGGAGGGATTCTGTTGTTATCCAAAGAGAAATACATTaGCAAAAGTCCCAACCCCAA | + |
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Preference number: 4 (lower is better) Translates to: QYILICSDVELWRDSVVIQREIH*QKSQPQ Trigger: TTGGGGTTGGGACTTTTGCCAATGTATTTCTCTTTG...GATAACAACAGAATCCCTCCATAGTTCTACATCTGAACAAATAAGGATGTATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR TCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCGAGTATTCCTTTACCTaGATTAACAGGAACAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFEYSFT*INRNKC Trigger: ACACTTGTTCCTGTTAATTCAGGTAAAGGAATACTC...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR TCA 90 bp | CAATACATCCTTATTTGTTCAGATGTAGAACTATGGAGGGATTCTGTTGTTATCGAGTATTCCTTTACCTaGATTAACAGGAACAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: QYILICSDVELWRDSVVIEYSFT*INRNKC Trigger: ACACTTGTTCCTGTTAATTCAGGTAAAGGAATACTC...GATAACAACAGAATCCCTCCATAGTTCTACATCTGAACAAATAAGGATGTATTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR GCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCAAACCAAAATGTCATTaGAATGCCTCAGGGAATGAT | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFKPKCH*NASGND Trigger: ATCATTCCCTGAGGCATTGCAATGACATTTTGGTTT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR GCA 90 bp | CAATACATCCTTATTTGTTCAGATGTAGAACTATGGAGGGATTCTGTTGTTATCAAACCAAAATGTCATTaGAATGCCTCAGGGAATGAT | + |
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Preference number: 4 (lower is better) Translates to: QYILICSDVELWRDSVVIKPKCH*NASGND Trigger: ATCATTCCCTGAGGCATTGCAATGACATTTTGGTTT...GATAACAACAGAATCCCTCCATAGTTCTACATCTGAACAAATAAGGATGTATTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR CCA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCAGAACCAGTCGAGATTaGAGAGAAATTATAGACAAA | + |
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Preference number: 4 (lower is better) Translates to: VIITLLFYKYSSEHHTLFRTSRD*REIIDK Trigger: TTTGTCTATAATTTCTCTCCAATCTCGACTGGTTCT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS CCA 90 bp | ATGGAGACACTGGTCCAGACCATGATGCTCATGAATGTGGCATCATaGGCAAACCTCAAGAAGACAATGCCTACACTGAAATCAGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: METLVQTMMLMNVAS*ANLKKTMPTLKSEV Trigger: CACTTCTGATTTCAGTGTAGGCATTGTCTTCTTGAGGTTTGCCCATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCTGCTGTGGTCTCTGCTaGGCCCCTGGGGTCCTGATT | + |
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Preference number: 5 (lower is better) Translates to: VIITLLFYKYSSEHHTLFCCGLC*APGVLI Trigger: AATCAGGACCCCAGGGGCCAAGCAGAGACCACAGCA...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | CAATACATCCTTATTTGTTCAGATGTAGAACTATGGAGGGATTCTGTTGTTATCTGCTGTGGTCTCTGCTaGGCCCCTGGGGTCCTGATT | + |
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Preference number: 5 (lower is better) Translates to: QYILICSDVELWRDSVVICCGLC*APGVLI Trigger: AATCAGGACCCCAGGGGCCAAGCAGAGACCACAGCA...GATAACAACAGAATCCCTCCATAGTTCTACATCTGAACAAATAAGGATGTATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS TCA 90 bp | AACAGGAACAAGTGTGACAAACTGATGGATACTCAGAACACAAGTTaGACACAAGTTTGTGCTTCTTGCCACGAGGCGAGTGAAGAATTC | + |
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Preference number: 5 (lower is better) Translates to: NRNKCDKLMDTQNTS*TQVCASCHEASEEF Trigger: GAATTCTTCACTCGCCTCGTGGCAAGAAGCACAAACTTGTGTTCAACTTGTGTTCTGAGTATCCATCAGTTTGTCACACTTGTTCCTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | TTTAGACTAGCCTTCAGTAGAGTGCAGTTATATACCAGAGAATGGAGGGTGGTGTACTCAGAACACAAGTaGAACACAAGTTTGTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: FRLAFSRVQLYTREWRVVYSEHK*NTSLCF Trigger: GAAGCACAAACTTGTGTTCAACTTGTGTTCTGAGTA...CACCACCCTCCATTCTCTGGTATATAACTGCACTCTACTGAAGGCTAGTCTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCAAGAGAGTTAAGGCATaGGCCACAGCCATGTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: VIITLLFYKYSSEHHTLFKRVKA*ATAMCL Trigger: AAGACACATGGCTGTGGCCAATGCCTTAACTCTCTT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | CAATACATCCTTATTTGTTCAGATGTAGAACTATGGAGGGATTCTGTTGTTATCAAGAGAGTTAAGGCATaGGCCACAGCCATGTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: QYILICSDVELWRDSVVIKRVKA*ATAMCL Trigger: AAGACACATGGCTGTGGCCAATGCCTTAACTCTCTT...GATAACAACAGAATCCCTCCATAGTTCTACATCTGAACAAATAAGGATGTATTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | TTCAGTAGAGTGCAGTTATATACCAGAGAATGGAGGGTGGTGAATAACTCACTGGCAAAAGTCATCATGTaGTTTGGAAATATAGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: FSRVQLYTREWRVVNNSLAKVIM*FGNIVR Trigger: CCTCACTATATTTCCAAACAACATGATGACTTTTGC...CAGTGAGTTATTCACCACCCTCCATTCTCTGGTATATAACTGCACTCTACTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | CCTGATACTTATCTTGTGAGTTCTGCTGCCTTTGGACATTCTCATGCATCCAAAACATTTGAGGTCAGTTaGAGGAATAATTGGAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: PDTYLVSSAAFGHSHASKTFEVS*RNNWSK Trigger: TTTGCTCCAATTATTCCTCAAACTGACCTCAAATGT...TTTGGATGCATGAGAATGTCCAAAGGCAGCAGAACTCACAAGATAAGTATCAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000236162.2 |
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| CDS TCA 90 bp | ATAACTTGCCATGTTTGTGACACTTGCTCTGAGTATTCCTTTACCTaGATTAACAGGAACAAGTGTGACAAACTGATGGATACTCAGAAC | + |
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Preference number: 5 (lower is better) Translates to: ITCHVCDTCSEYSFT*INRNKCDKLMDTQN Trigger: GTTCTGAGTATCCATCAGTTTGTCACACTTGTTCCTGTTAATTCAGGTAAAGGAATACTCAGAGCAAGTGTCACAAACATGGCAAGTTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCACAAAGAGAAATACATaGGCAAAAGTCCCAACCCCA | + |
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Preference number: 5 (lower is better) Translates to: VIITLLFYKYSSEHHTLFTKRNT*AKVPTP Trigger: TGGGGTTGGGACTTTTGCCAATGTATTTCTCTTTGT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCTACTCAGAACACAAGTaGAACACAAGTTTGTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: VIITLLFYKYSSEHHTLFYSEHK*NTSLCF Trigger: GAAGCACAAACTTGTGTTCAACTTGTGTTCTGAGTA...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCGCAAAAGTCATCATGTaGTTTGGAAATATAGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: VIITLLFYKYSSEHHTLFAKVIM*FGNIVR Trigger: CCTCACTATATTTCCAAACAACATGATGACTTTTGC...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS-3UTR CAA 90 bp | GTGATTATAACCTTACTCTTTTATAAGTATAGCAGTGAGCACCATACCTTGTTCACATTTGAGGTCAGTTaGAGGAATAATTGGAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: VIITLLFYKYSSEHHTLFTFEVS*RNNWSK Trigger: TTTGCTCCAATTATTCCTCAAACTGACCTCAAATGT...GAACAAGGTATGGTGCTCACTGCTATACTTATAAAAGAGTAAGGTTATAATCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS CCA 72 bp | AAGCCAACAAATGTGACTACCAGCATCAGGATAGTATaGGTTGCTGTGGTCTCTGCTTGGCCCCTGGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: KPTNVTTSIRIV*VAVVSAWPLGS Trigger: GGACCCCAGGGGCCAAGCAGAGACCACAGCAACCCATACTATCCTGATGCTGGTAGTCACATTTGTTGGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS GCA 72 bp | AACAAATGTGACTACCAGCATCAGGATAGTATGGGTTaGTGTGGTCTCTGCTTGGCCCCTGGGGTCCTGATT | + |
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Preference number: 6 (lower is better) Translates to: NKCDYQHQDSMG*CGLCLAPGVLI Trigger: AATCAGGACCCCAGGGGCCAAGCAGAGACCACAGCAACCCATACTATCCTGATGCTGGTAGTCACATTTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS CAA 72 bp | CAGCATCAGGATAGTATGGGTTGCTGTGGTCTCTGCTaGGCCCCTGGGGTCCTGATTGAGAGTGAATATGTA | + |
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Preference number: 6 (lower is better) Translates to: QHQDSMGCCGLC*APGVLIESEYV Trigger: TACATATTCACTCTCAATCAGGACCCCAGGGGCCAAGCAGAGACCACAGCAACCCATACTATCCTGATGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS CAA 90 bp | TGTGACTACCAGCATCAGGATAGTATGGGTTGCTGTGGTCTCTGCTaGGCCCCTGGGGTCCTGATTGAGAGTGAATATGTACTGCATTCT | + |
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Preference number: 6 (lower is better) Translates to: CDYQHQDSMGCCGLC*APGVLIESEYVLHS Trigger: AGAATGCAGTACATATTCACTCTCAATCAGGACCCCAGGGGCCAAGCAGAGACCACAGCAACCCATACTATCCTGATGCTGGTAGTCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS TCA 72 bp | AAAGTCCCAACCCCAAACTGGCAAAGCAAGATGATCTaGAAAGCCACTTCCTCAGTGGTTTTCAGGGATGTA | + |
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Preference number: 6 (lower is better) Translates to: KVPTPNWQSKMI*KATSSVVFRDV Trigger: TACATCCCTGAAAACCACTGAGGAAGTGGCTTTTCAGATCATCTTGCTTTGCCAGTTTGGGGTTGGGACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS TCA 72 bp | AAGTGTGACAAACTGATGGATACTCAGAACACAAGTTaGACACAAGTTTGTGCTTCTTGCCACGAGGCGAGT | + |
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Preference number: 6 (lower is better) Translates to: KCDKLMDTQNTS*TQVCASCHEAS Trigger: ACTCGCCTCGTGGCAAGAAGCACAAACTTGTGTTCAACTTGTGTTCTGAGTATCCATCAGTTTGTCACACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS TCA 72 bp | CATGTTTGTGACACTTGCTCTGAGTATTCCTTTACCTaGATTAACAGGAACAAGTGTGACAAACTGATGGAT | + |
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Preference number: 6 (lower is better) Translates to: HVCDTCSEYSFT*INRNKCDKLMD Trigger: ATCCATCAGTTTGTCACACTTGTTCCTGTTAATTCAGGTAAAGGAATACTCAGAGCAAGTGTCACAAACATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS GCA 72 bp | GACACTGAAGAACCAACAACTGTAACAAGAATAACTTaGCATGTTTGTGACACTTGCTCTGAGTATTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: DTEEPTTVTRIT*HVCDTCSEYSF Trigger: AAAGGAATACTCAGAGCAAGTGTCACAAACATGGCAAGTTATTCTTGTTACAGTTGTTGGTTCTTCAGTGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS CCA 72 bp | AGATTGGAGAGAAATTATAGACAAAGAGAAATACATTaGCAAAAGTCCCAACCCCAAACTGGCAAAGCAAGA | + |
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Preference number: 6 (lower is better) Translates to: RLERNYRQREIH*QKSQPQTGKAR Trigger: TCTTGCTTTGCCAGTTTGGGGTTGGGACTTTTGCCAATGTATTTCTCTTTGTCTATAATTTCTCTCCAATCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS CAA 72 bp | GTGGAACAGAACAACTTGCTTTTAGAGTTATTGTTATaGTCTGTTAACTGTGGACCAGTGACCTTAATTGGA | + |
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Preference number: 6 (lower is better) Translates to: VEQNNLLLELLL*SVNCGPVTLIG Trigger: TCCAATTAAGGTCACTGGTCCACAGTTAACAGACAATAACAATAACTCTAAAAGCAAGTTGTTCTGTTCCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS CAA 72 bp | TCAGAAGTGGAACAGAACAACTTGCTTTTAGAGTTATaGTTATTGTCTGTTAACTGTGGACCAGTGACCTTA | + |
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Preference number: 6 (lower is better) Translates to: SEVEQNNLLLEL*LLSVNCGPVTL Trigger: TAAGGTCACTGGTCCACAGTTAACAGACAATAACAATAACTCTAAAAGCAAGTTGTTCTGTTCCACTTCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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| CDS CAA 90 bp | ACACTGAAATCAGAAGTGGAACAGAACAACTTGCTTTTAGAGTTATaGTTATTGTCTGTTAACTGTGGACCAGTGACCTTAATTGGAATG | + |
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Preference number: 6 (lower is better) Translates to: TLKSEVEQNNLLLEL*LLSVNCGPVTLIGM Trigger: CATTCCAATTAAGGTCACTGGTCCACAGTTAACAGACAATAACAATAACTCTAAAAGCAAGTTGTTCTGTTCCACTTCTGATTTCAGTGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000173571.2 ENSMUST00000236162.2 |
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