Pregenerated sensors for V1RA8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062546Ensembl transcript IDs: ENSMUST00000078371.6
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGCCTCGAACTCAGAAATCTGCTTGTCTCTGCCTCCCAAGTGCTaGGATAAAAGGCATGTGCCACCACCGCCCAGCTACCAGCACAGA | + |
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Preference number: 1 (lower is better) Translates to: LASNSEICLSLPPKC*DKRHVPPPPSYQHR Trigger: TCTGTGCTGGTAGCTGGGCGGTGGTGGCACATGCCTTTTATCCCAGCACTTGGGAGGCAGAGACAAGCAGATTTCTGAGTTCGAGGCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 90 bp | CCAGCTACCAGCACAGATTTAGAGAAGTGTAAGTCATTCAGGCTGTaGCAAGGCAGATCACATTTCAGATTTTCTTGGAAGAGAGTTAAG | + |
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Preference number: 1 (lower is better) Translates to: PATSTDLEKCKSFRL*QGRSHFRFSWKRVK Trigger: CTTAACTCTCTTCCAAGAAAATCTGAAATGTGATCTGCCTTGTCACAGCCTGAATGACTTACACTTCTCTAAATCTGTGCTGGTAGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CCA 90 bp | CATGTGAGACACACATTTCCCATTCAGAATATCATGGACATACAGTaGTGTTCGAGAGGACATTCACATTATTGTCCAATCAGTGTGTAC | + |
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Preference number: 1 (lower is better) Translates to: HVRHTFPIQNIMDIQ*CSRGHSHYCPISVY Trigger: GTACACACTGATTGGACAATAATGTGAATGTCCTCTCGAACACCACTGTATGTCCATGATATTCTGAATGGGAAATGTGTGTCTCACATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 90 bp | AACCATGCACATTATGCCAATACTCATAGCTCTGGTGCCAAATGTTaGTACACTGTGAGAAAACTTACCCTCACAGAAAATCAAAGTACT | + |
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Preference number: 1 (lower is better) Translates to: NHAHYANTHSSGAKC*YTVRKLTLTENQST Trigger: AGTACTTTGATTTTCTGTGAGGGTAAGTTTTCTCACAGTGTATCAACATTTGGCACCAGAGCTATGAGTATTGGCATAATGTGCATGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 90 bp | TGGAATTCCAACTCCATAAGAAAAATTTGCACAGTGTCAATTTCTTaGACACCTAGAACACAGTGCTGGGTTTCATTCATGTTGGTTCCT | + |
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Preference number: 1 (lower is better) Translates to: WNSNSIRKICTVSIS*TPRTQCWVSFMLVP Trigger: AGGAACCAACATGAATGAAACCCAGCACTGTGTTCTAGGTGTTCAAGAAATTGACACTGTGCAAATTTTTCTTATGGAGTTGGAATTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 90 bp | ATTATGCCAATACTCATAGCTCTGGTGCCAAATGTTGATACACTGTaGGAAAACTTACCCTCACAGAAAATCAAAGTACTACCTTCTCAT | + |
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Preference number: 1 (lower is better) Translates to: IMPILIALVPNVDTL*ENLPSQKIKVLPSH Trigger: ATGAGAAGGTAGTACTTTGATTTTCTGTGAGGGTAAGTTTTCTCACAGTGTATCAACATTTGGCACCAGAGCTATGAGTATTGGCATAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CAA 90 bp | GAGCTTATAAAGGGGCAGGCCCATCCCCACTATGCCAGGCTCTCATaGCCAGGATCTTGCTTATTCAGGATTGCCTCAGGAAGACAGGTT | + |
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Preference number: 2 (lower is better) Translates to: ELIKGQAHPHYARLS*PGSCLFRIASGRQV Trigger: AACCTGTCTTCCTGAGGCAATCCTGAATAAGCAAGATCCTGGCAATGAGAGCCTGGCATAGTGGGGATGGGCCTGCCCCTTTATAAGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CAA 90 bp | CCCACTATGCCAGGCTCTCATTGCCAGGATCTTGCTTATTCAGGATaGCCTCAGGAAGACAGGTTCAGACTCTTAGTAGGTAGCAGCATC | + |
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Preference number: 2 (lower is better) Translates to: PTMPGSHCQDLAYSG*PQEDRFRLLVGSSI Trigger: GATGCTGCTACCTACTAAGAGTCTGAACCTGTCTTCCTGAGGCAATCCTGAATAAGCAAGATCCTGGCAATGAGAGCCTGGCATAGTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR CCA 90 bp | TATAACCTTGGTTGTCCTAGAGCTCACATTGTAAACCAGGCTGGCCTCGAACTCCTGCCTCCCAAGTGCTaGGATAAAAGGCATGTGCCA | + |
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Preference number: 2 (lower is better) Translates to: YNLGCPRAHIVNQAGLELLPPKC*DKRHVP Trigger: TGGCACATGCCTTTTATCCCAGCACTTGGGAGGCAG...GAGTTCGAGGCCAGCCTGGTTTACAATGTGAGCTCTAGGACAACCAAGGTTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR TCA 90 bp | AAAACTGCAGAGGTGGCAGAACAACAGTCCTATCTAGGTCTGAAGACTCTACCCACAGCGCTCCATTCCTaGATTGGAATTCCAACTCCA | + |
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Preference number: 2 (lower is better) Translates to: KTAEVAEQQSYLGLKTLPTALHS*IGIPTP Trigger: TGGAGTTGGAATTCCAATTCAGGAATGGAGCGCTGT...GGGTAGAGTCTTCAGACCTAGATAGGACTGTTGTTCTGCCACCTCTGCAGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR GCA 90 bp | AAAACTGCAGAGGTGGCAGAACAACAGTCCTATCTAGGTCTGAAGACTCTACCCTCGAACTCAGAAATCTaGTTGTCTCTGCCTCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: KTAEVAEQQSYLGLKTLPSNSEI*LSLPPK Trigger: CTTGGGAGGCAGAGACAAGCAGATTTCTGAGTTCGA...GGGTAGAGTCTTCAGACCTAGATAGGACTGTTGTTCTGCCACCTCTGCAGTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR TCA 90 bp | ACTATGCCAGGCTCTCATTGCCAGGATCTTGCTTATTCAGGATTGCCTCAGGAAAAGTCATTCAGGCTGTaGCAAGGCAGATCACATTTC | + |
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Preference number: 2 (lower is better) Translates to: TMPGSHCQDLAYSGLPQEKSFRL*QGRSHF Trigger: GAAATGTGATCTGCCTTGTCACAGCCTGAATGACTT...TTCCTGAGGCAATCCTGAATAAGCAAGATCCTGGCAATGAGAGCCTGGCATAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR TCA 90 bp | ACTATGCCAGGCTCTCATTGCCAGGATCTTGCTTATTCAGGATTGCCTCAGGAATCTGGTGCCAAATGTTaGTACACTGTGAGAAAACTT | + |
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Preference number: 2 (lower is better) Translates to: TMPGSHCQDLAYSGLPQESGAKC*YTVRKL Trigger: AAGTTTTCTCACAGTGTATCAACATTTGGCACCAGA...TTCCTGAGGCAATCCTGAATAAGCAAGATCCTGGCAATGAGAGCCTGGCATAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR TCA 90 bp | ACTATGCCAGGCTCTCATTGCCAGGATCTTGCTTATTCAGGATTGCCTCAGGAATCATGTTGGTTCCTGTaGGTTCTACCTTCTATTGTA | + |
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Preference number: 2 (lower is better) Translates to: TMPGSHCQDLAYSGLPQESCWFL*VLPSIV Trigger: TACAATAGAAGGTAGAACTCACAGGAACCAACATGA...TTCCTGAGGCAATCCTGAATAAGCAAGATCCTGGCAATGAGAGCCTGGCATAGT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR CCA 90 bp | TCAGGATTGCCTCAGGAAGACAGGTTCAGACTCTTAGTAGGTAGCAGCATCTTGGCTCCATTCCTGAATTaGAATTCCAACTCCATAAGA | + |
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Preference number: 2 (lower is better) Translates to: SGLPQEDRFRLLVGSSILAPFLN*NSNSIR Trigger: TCTTATGGAGTTGGAATTCCAATTCAGGAATGGAGC...CAAGATGCTGCTACCTACTAAGAGTCTGAACCTGTCTTCCTGAGGCAATCCTGA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR CCA 90 bp | TCAGGATTGCCTCAGGAAGACAGGTTCAGACTCTTAGTAGGTAGCAGCATCTTGCCATTCAGAATATCATaGACATACAGTGGTGTTCGA | + |
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Preference number: 2 (lower is better) Translates to: SGLPQEDRFRLLVGSSILPFRIS*TYSGVR Trigger: TCGAACACCACTGTATGTCCATGATATTCTGAATGG...CAAGATGCTGCTACCTACTAAGAGTCTGAACCTGTCTTCCTGAGGCAATCCTGA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR CCA 90 bp | AGAACACAGTGCTGGGTTTCATTCATGTTGGTTCCTGTGAGTTCTACCTTCTATCATTGTAAACCAGGCTaGCCTCGAACTCAGAAATCT | + |
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Preference number: 2 (lower is better) Translates to: RTQCWVSFMLVPVSSTFYHCKPG*PRTQKS Trigger: AGATTTCTGAGTTCGAGGCCAGCCTGGTTTACAATG...ATAGAAGGTAGAACTCACAGGAACCAACATGAATGAAACCCAGCACTGTGTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CAA 90 bp | GAATATCATGGACATACAGTGGTGTTCGAGAGGACATTCACATTATaGTCCAATCAGTGTGTACATGTCTACAGCGCTCCATTCCTGAAT | + |
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Preference number: 2 (lower is better) Translates to: EYHGHTVVFERTFTL*SNQCVHVYSAPFLN Trigger: ATTCAGGAATGGAGCGCTGTAGACATGTACACACTGATTGGACAATAATGTGAATGTCCTCTCGAACACCACTGTATGTCCATGATATTC 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR CCA 90 bp | TCAGTGTGTACATGTCTACAGCGCTCCATTCCTGAATTGGAATTCCAACTCCATCTACCTTCTCATACATaGATATCAACAGGTCAGTTA | + |
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Preference number: 2 (lower is better) Translates to: SVCTCLQRSIPELEFQLHLPSHT*ISTGQL Trigger: TAACTGACCTGTTGATATCCATGTATGAGAAGGTAG...ATGGAGTTGGAATTCCAATTCAGGAATGGAGCGCTGTAGACATGTACACACTGA 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR TCA 90 bp | CTTGTATCCTTCATGGGAAAACAGATGATAAGAGATAGAGCATCAGGAATGATGAATGTTGATACACTGTaGGAAAACTTACCCTCACAG | + |
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Preference number: 2 (lower is better) Translates to: LVSFMGKQMIRDRASGMMNVDTL*ENLPSQ Trigger: CTGTGAGGGTAAGTTTTCTCACAGTGTATCAACATT...CATCATTCCTGATGCTCTATCTCTTATCATCTGTTTTCCCATGAAGGATACAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR CCA 90 bp | AAAATACATGTGAGACACACATTTCCCATTCAGAATATCATGGACATACAGTGGCCTAGAACACAGTGCTaGGTTTCATTCATGTTGGTT | + |
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Preference number: 2 (lower is better) Translates to: KIHVRHTFPIQNIMDIQWPRTQC*VSFMLV Trigger: AACCAACATGAATGAAACCCAGCACTGTGTTCTAGG...CCACTGTATGTCCATGATATTCTGAATGGGAAATGTGTGTCTCACATGTATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR GCA 72 bp | TCGAACTCAGAAATCTGCTTGTCTCTGCCTCCCAAGTaGTGGGATAAAAGGCATGTGCCACCACCGCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: SNSEICLSLPPK*WDKRHVPPPPS Trigger: GCTGGGCGGTGGTGGCACATGCCTTTTATCCCAGCACTTGGGAGGCAGAGACAAGCAGATTTCTGAGTTCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CCA 72 bp | AACTCAGAAATCTGCTTGTCTCTGCCTCCCAAGTGCTaGGATAAAAGGCATGTGCCACCACCGCCCAGCTAC | + |
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Preference number: 3 (lower is better) Translates to: NSEICLSLPPKC*DKRHVPPPPSY Trigger: GTAGCTGGGCGGTGGTGGCACATGCCTTTTATCCCAGCACTTGGGAGGCAGAGACAAGCAGATTTCTGAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR GCA 72 bp | CATCCCCACTATGCCAGGCTCTCATTGCCAGGATCTTaGTTATTCAGGATTGCCTCAGGAAGACAGGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: HPHYARLSLPGS*LFRIASGRQVQ Trigger: CTGAACCTGTCTTCCTGAGGCAATCCTGAATAAGCAAGATCCTGGCAATGAGAGCCTGGCATAGTGGGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR-3UTR CAA 90 bp | TCAGGATTGCCTCAGGAAGACAGGTTCAGACTCTTAGTAGGTAGCAGCATCTTGTTTCTCTGTATAACCTaGGTTGTCCTAGAGCTCACA | + |
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Preference number: 3 (lower is better) Translates to: SGLPQEDRFRLLVGSSILFLCIT*VVLELT Trigger: TGTGAGCTCTAGGACAACCAAGGTTATACAGAGAAA...CAAGATGCTGCTACCTACTAAGAGTCTGAACCTGTCTTCCTGAGGCAATCCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 72 bp | TTTCCAAGGTGCTCCTCCCTAAGACAGCTGATTAACTaGAGAGCTTGTATCCTTCATGGGAAAACAGATGAT | + |
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Preference number: 3 (lower is better) Translates to: FPRCSSLRQLIN*RACILHGKTDD Trigger: ATCATCTGTTTTCCCATGAAGGATACAAGCTCTTCAGTTAATCAGCTGTCTTAGGGAGGAGCACCTTGGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CCA 72 bp | ATGAACCGGTTTCCTGAAAGGGAATCTGGGGATGTATaGAAAGAGATGGCAAGAGAAATATTGAGACCAAGA | + |
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Preference number: 3 (lower is better) Translates to: MNRFPERESGDV*KEMAREILRPR Trigger: TCTTGGTCTCAATATTTCTCTTGCCATCTCTTTCCATACATCCCCAGATTCCCTTTCAGGAAACCGGTTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CCA 72 bp | CAGTGTGTACATGTCTACAGCGCTCCATTCCTGAATTaGAATTCCAACTCCATAAGAAAAATTTGCACAGTG | + |
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Preference number: 3 (lower is better) Translates to: QCVHVYSAPFLN*NSNSIRKICTV Trigger: CACTGTGCAAATTTTTCTTATGGAGTTGGAATTCCAATTCAGGAATGGAGCGCTGTAGACATGTACACACTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 72 bp | AGCACAGATTTAGAGAAGTGTAAGTCATTCAGGCTGTaGCAAGGCAGATCACATTTCAGATTTTCTTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: STDLEKCKSFRL*QGRSHFRFSWK Trigger: CTTCCAAGAAAATCTGAAATGTGATCTGCCTTGTCACAGCCTGAATGACTTACACTTCTCTAAATCTGTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CCA 72 bp | CACACATTTCCCATTCAGAATATCATGGACATACAGTaGTGTTCGAGAGGACATTCACATTATTGTCCAATC | + |
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Preference number: 3 (lower is better) Translates to: HTFPIQNIMDIQ*CSRGHSHYCPI Trigger: GATTGGACAATAATGTGAATGTCCTCTCGAACACCACTGTATGTCCATGATATTCTGAATGGGAAATGTGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 72 bp | CATTATGCCAATACTCATAGCTCTGGTGCCAAATGTTaGTACACTGTGAGAAAACTTACCCTCACAGAAAAT | + |
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Preference number: 3 (lower is better) Translates to: HYANTHSSGAKC*YTVRKLTLTEN Trigger: ATTTTCTGTGAGGGTAAGTTTTCTCACAGTGTATCAACATTTGGCACCAGAGCTATGAGTATTGGCATAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 72 bp | ATACTCATAGCTCTGGTGCCAAATGTTGATACACTGTaGGAAAACTTACCCTCACAGAAAATCAAAGTACTA | + |
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Preference number: 3 (lower is better) Translates to: ILIALVPNVDTL*ENLPSQKIKVL Trigger: TAGTACTTTGATTTTCTGTGAGGGTAAGTTTTCTCACAGTGTATCAACATTTGGCACCAGAGCTATGAGTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 72 bp | GAACACAGTGCTGGGTTTCATTCATGTTGGTTCCTGTaGGTTCTACCTTCTATTGTAGATTCATATAATATC | + |
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Preference number: 3 (lower is better) Translates to: EHSAGFHSCWFL*VLPSIVDSYNI Trigger: GATATTATATGAATCTACAATAGAAGGTAGAACTCACAGGAACCAACATGAATGAAACCCAGCACTGTGTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR TCA 72 bp | AACTCCATAAGAAAAATTTGCACAGTGTCAATTTCTTaGACACCTAGAACACAGTGCTGGGTTTCATTCATG | + |
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Preference number: 3 (lower is better) Translates to: NSIRKICTVSIS*TPRTQCWVSFM Trigger: CATGAATGAAACCCAGCACTGTGTTCTAGGTGTTCAAGAAATTGACACTGTGCAAATTTTTCTTATGGAGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CAA 72 bp | CCATCCCCACTATGCCAGGCTCTCATTGCCAGGATCTaGCTTATTCAGGATTGCCTCAGGAAGACAGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: PSPLCQALIARI*LIQDCLRKTGS Trigger: TGAACCTGTCTTCCTGAGGCAATCCTGAATAAGCAAGATCCTGGCAATGAGAGCCTGGCATAGTGGGGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CAA 72 bp | CCAGGCTCTCATTGCCAGGATCTTGCTTATTCAGGATaGCCTCAGGAAGACAGGTTCAGACTCTTAGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: PGSHCQDLAYSG*PQEDRFRLLVG Trigger: ACCTACTAAGAGTCTGAACCTGTCTTCCTGAGGCAATCCTGAATAAGCAAGATCCTGGCAATGAGAGCCTGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS-3UTR CCA 90 bp | TCAGTGTGTACATGTCTACAGCGCTCCATTCCTGAATTGGAATTCCAACTCCATATGAACATGAAGGTGTaGAAGAGGAGAAGGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: SVCTCLQRSIPELEFQLHMNMKV*KRRRQL Trigger: CAGCTGCCTTCTCCTCTTCCACACCTTCATGTTCAT...ATGGAGTTGGAATTCCAATTCAGGAATGGAGCGCTGTAGACATGTACACACTGA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| 3UTR CAA 72 bp | GGACATACAGTGGTGTTCGAGAGGACATTCACATTATaGTCCAATCAGTGTGTACATGTCTACAGCGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: GHTVVFERTFTL*SNQCVHVYSAP Trigger: TGGAGCGCTGTAGACATGTACACACTGATTGGACAATAATGTGAATGTCCTCTCGAACACCACTGTATGTCC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS-3UTR CCA 90 bp | CTTGTATCCTTCATGGGAAAACAGATGATAAGAGATAGAGCATCAGGAATGATGCACTCAACAGGCAAGTaGCACAAACAGAGAGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LVSFMGKQMIRDRASGMMHSTGK*HKQRGS Trigger: GGAGCCTCTCTGTTTGTGCCACTTGCCTGTTGAGTG...CATCATTCCTGATGCTCTATCTCTTATCATCTGTTTTCCCATGAAGGATACAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS-3UTR CCA 90 bp | AGAACACAGTGCTGGGTTTCATTCATGTTGGTTCCTGTGAGTTCTACCTTCTATGCTCTGGAGTTGCTTTaGGAGAAAGTTTTGAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: RTQCWVSFMLVPVSSTFYALELL*EKVLSS Trigger: AGAACTCAAAACTTTCTCCCAAAGCAACTCCAGAGC...ATAGAAGGTAGAACTCACAGGAACCAACATGAATGAAACCCAGCACTGTGTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS-3UTR CAA 90 bp | TCAGTGTGTACATGTCTACAGCGCTCCATTCCTGAATTGGAATTCCAACTCCATAGGAGAAGGCAGCTGTaGGCTGAGATCCCGATGCCT | + |
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Preference number: 5 (lower is better) Translates to: SVCTCLQRSIPELEFQLHRRRQL*AEIPMP Trigger: AGGCATCGGGATCTCAGCCAACAGCTGCCTTCTCCT...ATGGAGTTGGAATTCCAATTCAGGAATGGAGCGCTGTAGACATGTACACACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS-3UTR CAA 90 bp | AAAACTGCAGAGGTGGCAGAACAACAGTCCTATCTAGGTCTGAAGACTCTACCCTGCTCTGGAGTTGCTTaGGGAGAAAGTTTTGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: KTAEVAEQQSYLGLKTLPCSGVA*GESFEF Trigger: GAACTCAAAACTTTCTCCCAAAGCAACTCCAGAGCA...GGGTAGAGTCTTCAGACCTAGATAGGACTGTTGTTCTGCCACCTCTGCAGTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS-3UTR CAA 90 bp | CTTGTATCCTTCATGGGAAAACAGATGATAAGAGATAGAGCATCAGGAATGATGCTCGTTGCTCTGGAGTaGCTTTGGGAGAAAGTTTTG | + |
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Preference number: 5 (lower is better) Translates to: LVSFMGKQMIRDRASGMMLVALE*LWEKVL Trigger: CAAAACTTTCTCCCAAAGCAACTCCAGAGCAACGAG...CATCATTCCTGATGCTCTATCTCTTATCATCTGTTTTCCCATGAAGGATACAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS-3UTR CAA 90 bp | CATATTGACCTATTAAAAACATTTCTAGGTTGTAGCCGCCTGAAACTTCATGAACTTTGGGAGAAAGTTTaGAGTTCTGAAGGCGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: HIDLLKTFLGCSRLKLHELWEKV*SSEGAG Trigger: CCCAGCGCCTTCAGAACTCAAAACTTTCTCCCAAAG...TTCATGAAGTTTCAGGCGGCTACAACCTAGAAATGTTTTTAATAGGTCAATATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS CAA 72 bp | GGGCTCGTTGCTCTGGAGTTGCTTTGGGAGAAAGTTTaGAGTTCTGAAGGCGCTGGGACCGAGTCTTATGCC | + |
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Preference number: 6 (lower is better) Translates to: GLVALELLWEKV*SSEGAGTESYA Trigger: GGCATAAGACTCGGTCCCAGCGCCTTCAGAACTCAAAACTTTCTCCCAAAGCAACTCCAGAGCAACGAGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS TCA 72 bp | GGCTCGTTGCTCTGGAGTTGCTTTGGGAGAAAGTTTTaGGTTCTGAAGGCGCTGGGACCGAGTCTTATGCCT | + |
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Preference number: 6 (lower is better) Translates to: GSLLWSCFGRKF*VLKALGPSLMP Trigger: AGGCATAAGACTCGGTCCCAGCGCCTTCAGAACTCAAAACTTTCTCCCAAAGCAACTCCAGAGCAACGAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS TCA 72 bp | CATGAAGGTGTGGAAGAGGAGAAGGCAGCTGTTGGCTaGGATCCCGATGCCTATCTCAGAGAAGAAGGCATT | + |
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Preference number: 6 (lower is better) Translates to: HEGVEEEKAAVG*DPDAYLREEGI Trigger: AATGCCTTCTTCTCTGAGATAGGCATCGGGATCTCAGCCAACAGCTGCCTTCTCCTCTTCCACACCTTCATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS TCA 72 bp | TGCTCTGGAGTTGCTTTGGGAGAAAGTTTTGAGTTCTaGAGGCGCTGGGACCGAGTCTTATGCCTGCACAAG | + |
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Preference number: 6 (lower is better) Translates to: CSGVALGESFEF*RRWDRVLCLHK Trigger: CTTGTGCAGGCATAAGACTCGGTCCCAGCGCCTTCAGAACTCAAAACTTTCTCCCAAAGCAACTCCAGAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS GCA 72 bp | AAGCTCATAAGCATTAGAATGGTCCTGAGGGCTCGTTaGTCTGGAGTTGCTTTGGGAGAAAGTTTTGAGTTC | + |
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Preference number: 6 (lower is better) Translates to: KLISIRMVLRAR*SGVALGESFEF Trigger: GAACTCAAAACTTTCTCCCAAAGCAACTCCAGAGCAACGAGCCCTCAGGACCATTCTAATGCTTATGAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS GCA 72 bp | CAAGTGGCACAAACAGAGAGGCTCCTGAAAAACCTGTaGAAGAAAATGACTAGTTTACATGTGATGTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: QVAQTERLLKNL*KKMTSLHVMSS Trigger: GGACGACATCACATGTAAACTAGTCATTTTCTTGCACAGGTTTTTCAGGAGCCTCTCTGTTTGTGCCACTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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| CDS TCA 72 bp | AGATCCCGATGCCTATCTCAGAGAAGAAGGCATTTCTaGTGTAAACACTACAGTACAGTGTATGGTCTTTAT | + |
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Preference number: 6 (lower is better) Translates to: RSRCLSQRRRHF*CKHYSTVYGLY Trigger: ATAAAGACCATACACTGTACTGTAGTGTTTACATCAGAAATGCCTTCTTCTCTGAGATAGGCATCGGGATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078371.6 |
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