Pregenerated sensors for UXT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001134Ensembl transcript IDs: ENSMUST00000123836.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | GAACGTTTTAGAGGTTCTACAGAAAGGATGGGTCTTCCAGTAATTTaGGTCTCTAGGGCACTTAGTAAATTAGTGAGAATTAGGGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: ERFRGSTERMGLPVI*VSRALSKLVRIREK Trigger: TTTTTCCCTAATTCTCACTAATTTACTAAGTGCCCTAGAGACCAAAATTACTGGAAGACCCATCCTTTCTGTAGAACCTCTAAAACGTTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| 3UTR-3UTR CAA 90 bp | CAGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCTCAGGTGCTTTAATATaGGAGGCTGGGAAGATGCAG | + |
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Preference number: 3 (lower is better) Translates to: QPIQSILYGKTKGTDTNISGALI*EAGKMQ Trigger: CTGCATCTTCCCAGCCTCCAATATTAAAGCACCTGA...GATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| 3UTR-3UTR CAA 90 bp | CAGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCGGTCTTCCAGTAATTTaGGTCTCTAGGGCACTTAGT | + |
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Preference number: 3 (lower is better) Translates to: QPIQSILYGKTKGTDTNIGLPVI*VSRALS Trigger: ACTAAGTGCCCTAGAGACCAAAATTACTGGAAGACC...GATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR GCA 90 bp | GGAATTGTGAGGAGCAGGGCCAAGGTTCTAAAGGCGACAAAAGAGAGTAAAGCATTTTGCAAGTCTCGCTaGAGTACGTCACTGATAAAG | + |
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Preference number: 4 (lower is better) Translates to: GIVRSRAKVLKATKESKAFCKSR*STSLIK Trigger: CTTTATCAGTGACGTACTGCAGCGAGACTTGCAAAA...TGCTTTACTCTCTTTTGTCGCCTTTAGAACCTTGGCCCTGCTCCTCACAATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR GCA 90 bp | CTATGTGATTCCAAGGCATTCAGGTGCTTTAATATTGGAGGCTGGGAAGATGCAGGCTCTGGGAAATTCTaGAGGCCTTGTAGTTCTCTA | + |
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Preference number: 4 (lower is better) Translates to: LCDSKAFRCFNIGGWEDAGSGKF*RPCSSL Trigger: TAGAGAACTACAAGGCCTGCAGAATTTCCCAGAGCC...TGCATCTTCCCAGCCTCCAATATTAAAGCACCTGAATGCCTTGGAATCACATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR CCA 90 bp | CAGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCATGGGGAGATGGCTCTaGGAAATTCTGCAGGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: QPIQSILYGKTKGTDTNIMGRWL*EILQAL Trigger: CAAGGCCTGCAGAATTTCCCAGAGCCATCTCCCCAT...GATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR TCA 90 bp | AGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCTGGCCACATAGATGCGTaGAGTATCTGGGACCACTGT | + |
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Preference number: 4 (lower is better) Translates to: SPFSPFFMVRQRAQIQISGHIDA*SIWDHC Trigger: ACAGTGGTCCCAGATACTTCACGCATCTATGTGGCC...AGATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR GCA 90 bp | ATGGTAAGACAAAGGGCACAGATACAAATATCTAGGAAAAGGAATTGTGAGGAGCCAGGGCCACATAGATaGGTGAAGTATCTGGGACCA | + |
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Preference number: 4 (lower is better) Translates to: MVRQRAQIQISRKRNCEEPGPHR*VKYLGP Trigger: TGGTCCCAGATACTTCACGCATCTATGTGGCCCTGG...CTCCTCACAATTCCTTTTCCTAGATATTTGTATCTGTGCCCTTTGTCTTACCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR GCA 90 bp | CTATGTGATTCCAAGGCATTCAGGTGCTTTAATATTGGAGGCTGGGAAGATGCAGTCAATGAACTTGAGTaGTTCAGCCAGTGTCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LCDSKAFRCFNIGGWEDAVNELE*FSQCQF Trigger: GAACTGACACTGGCTGAAGCACTCAAGTTCATTGAC...TGCATCTTCCCAGCCTCCAATATTAAAGCACCTGAATGCCTTGGAATCACATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR TCA 90 bp | AGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCTTGTGGATATGGGCCTTaGTATTCATGGAGTCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SPFSPFFMVRQRAQIQISCGYGP*YSWSPW Trigger: CCAAGGACTCCATGAATATCAAGGCCCATATCCACA...AGATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR TCA 90 bp | ATGGTAAGACAAAGGGCACAGATACAAATATCTAGGAAAAGGAATTGTGAGGAGTATACCTTGTCTCGATaGTCCAGCACCTTTTGCAAG | + |
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Preference number: 4 (lower is better) Translates to: MVRQRAQIQISRKRNCEEYTLSR*SSTFCK Trigger: CTTGCAAAAGGTGCTGGATCATCGAGACAAGGTATA...CTCCTCACAATTCCTTTTCCTAGATATTTGTATCTGTGCCCTTTGTCTTACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR CCA 90 bp | ATGGTAAGACAAAGGGCACAGATACAAATATCTAGGAAAAGGAATTGTGAGGAGCCCTCTAGCATCATGTaGATATGGGCCTTGATATTC | + |
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Preference number: 4 (lower is better) Translates to: MVRQRAQIQISRKRNCEEPSSIM*IWALIF Trigger: GAATATCAAGGCCCATATCCACATGATGCTAGAGGG...CTCCTCACAATTCCTTTTCCTAGATATTTGTATCTGTGCCCTTTGTCTTACCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR TCA 90 bp | AGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCTATATATAACTCCGAGTaGTTAGTTTCCTGGAGTCGC | + |
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Preference number: 4 (lower is better) Translates to: SPFSPFFMVRQRAQIQISIYNSE*LVSWSR Trigger: GCGACTCCAGGAAACTAATCACTCGGAGTTATATAT...AGATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR GCA 90 bp | AGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCTAGATATACGGACAGCTaGTCATATACCTTGTCTCGA | + |
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Preference number: 4 (lower is better) Translates to: SPFSPFFMVRQRAQIQISRYTDS*SYTLSR Trigger: TCGAGACAAGGTATATGAGCAGCTGTCCGTATATCT...AGATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR TCA 90 bp | AGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCTATGACATTTCTTAGTTaGAGATATACGGACAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SPFSPFFMVRQRAQIQISMTFLS*RYTDSC Trigger: GCAGCTGTCCGTATATCTTCAACTAAGAAATGTCAT...AGATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR CAA 90 bp | GGAATTGTGAGGAGCAGGGCCAAGGTTCTAAAGGCGACAAAAGAGAGTAAAGCAATATTCATGGAGTCCTaGGTGAGGCTGTCGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: GIVRSRAKVLKATKESKAIFMES*VRLSLS Trigger: GCTCAGCGACAGCCTCACCAAGGACTCCATGAATAT...TGCTTTACTCTCTTTTGTCGCCTTTAGAACCTTGGCCCTGCTCCTCACAATTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR CAA 90 bp | CTATGTGATTCCAAGGCATTCAGGTGCTTTAATATTGGAGGCTGGGAAGATGCATTTCGGTCAATGAACTaGAGTGCTTCAGCCAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: LCDSKAFRCFNIGGWEDAFRSMN*SASASV Trigger: GACACTGGCTGAAGCACTCAAGTTCATTGACCGAAA...TGCATCTTCCCAGCCTCCAATATTAAAGCACCTGAATGCCTTGGAATCACATAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS-3UTR CAA 90 bp | CAGCCCATTCAGTCCATTCTTTATGGTAAGACAAAGGGCACAGATACAAATATCATGTGGATATGGGCCTaGATATTCATGGAGTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: QPIQSILYGKTKGTDTNIMWIWA*IFMESL Trigger: CAAGGACTCCATGAATATCAAGGCCCATATCCACAT...GATATTTGTATCTGTGCCCTTTGTCTTACCATAAAGAATGGACTGAATGGGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS CAA 90 bp | CCCTCTAGCATCATGTGGATATGGGCCTTGATATTCATGGAGTCCTaGGTGAGGCTGTCGCTGAGCTCTGTGAGGAGAGAACTCTTTCGG | + |
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Preference number: 6 (lower is better) Translates to: PSSIMWIWALIFMES*VRLSLSSVRRELFR Trigger: CCGAAAGAGTTCTCTCCTCACAGAGCTCAGCGACAGCCTCACCAAGGACTCCATGAATATCAAGGCCCATATCCACATGATGCTAGAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS CAA 72 bp | TCTCTAAGTCCCTCTAGCATCATGTGGATATGGGCCTaGATATTCATGGAGTCCTTGGTGAGGCTGTCGCTG | + |
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Preference number: 6 (lower is better) Translates to: SLSPSSIMWIWA*IFMESLVRLSL Trigger: CAGCGACAGCCTCACCAAGGACTCCATGAATATCAAGGCCCATATCCACATGATGCTAGAGGGACTTAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS TCA 72 bp | AGATATACGGACAGCTGCTCATATACCTTGTCTCGATaGTCCAGCACCTTTTGCAAGTCTCGCTGCAGTACG | + |
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Preference number: 6 (lower is better) Translates to: RYTDSCSYTLSR*SSTFCKSRCST Trigger: CGTACTGCAGCGAGACTTGCAAAAGGTGCTGGATCATCGAGACAAGGTATATGAGCAGCTGTCCGTATATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS CCA 72 bp | TGTAGTTCTCTAAGTCCCTCTAGCATCATGTGGATATaGGCCTTGATATTCATGGAGTCCTTGGTGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: CSSLSPSSIMWI*ALIFMESLVRL Trigger: CAGCCTCACCAAGGACTCCATGAATATCAAGGCCCATATCCACATGATGCTAGAGGGACTTAGAGAACTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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| CDS TCA 72 bp | TTAGTTTCCTGGAGTCGCTCAATGACATTTCTTAGTTaGAGATATACGGACAGCTGCTCATATACCTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: LVSWSRSMTFLS*RYTDSCSYTLS Trigger: AGACAAGGTATATGAGCAGCTGTCCGTATATCTTCAACTAAGAAATGTCATTGAGCGACTCCAGGAAACTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000123836.2 |
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