RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UVSSA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037355

Ensembl transcript IDs: ENSMUST00000087864.12, ENSMUST00000202046.4, ENSMUST00000202816.2

Found 446 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTCTGGGGATGATCTTCCCATGGAATGGGCACTTCAGTCGATCCTaGCGCTCGCAGAGCCTGCCATTAGGCCTCAGGGCCCGGCACTTG +
Preference number: 1 (lower is better)
Translates to: SLGMIFPWNGHFSRS*RSQSLPLGLRARHL
Trigger: CAAGTGCCGGGCCCTGAGGCCTAATGGCAGGCTCTGCGAGCGCCAGGATCGACTGAAGTGCCCATTCCATGGGAAGATCATCCCCAGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CCA 90 bp GGGTTGAGAGGCTGCCCCTTGTCATCTCTGGGGATGATCTTCCCATaGAATGGGCACTTCAGTCGATCCTGGCGCTCGCAGAGCCTGCCA +
Preference number: 1 (lower is better)
Translates to: GLRGCPLSSLGMIFP*NGHFSRSWRSQSLP
Trigger: TGGCAGGCTCTGCGAGCGCCAGGATCGACTGAAGTGCCCATTCCATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCCTCTCAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR GCA 90 bp CTTCTGGTCCATCTGGTTCATGGCAGCAACTACTCTCTGCACGGCTaGCTTGGCAAAGACCTTCTTCTCAAGGCGGGCCCGGGCGGTGTT +
Preference number: 1 (lower is better)
Translates to: LLVHLVHGSNYSLHG*LGKDLLLKAGPGGV
Trigger: AACACCGCCCGGGCCCGCCTTGAGAAGAAGGTCTTTGCCAAGGCAGCCGTGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACCAGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CCA 90 bp GAGAGGCTGCCCCTTGTCATCTCTGGGGATGATCTTCCCATGGAATaGGCACTTCAGTCGATCCTGGCGCTCGCAGAGCCTGCCATTAGG +
Preference number: 1 (lower is better)
Translates to: ERLPLVISGDDLPME*ALQSILALAEPAIR
Trigger: CCTAATGGCAGGCTCTGCGAGCGCCAGGATCGACTGAAGTGCCCATTCCATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CCA 90 bp CTGCTGCCGCTGAAGCTGCTGCCTTTGTTCACGGGCTCTGTCTTCTaGGTTGAGAGGCTGCCCCTTGTCATCTCTGGGGATGATCTTCCC +
Preference number: 1 (lower is better)
Translates to: LLPLKLLPLFTGSVF*VERLPLVISGDDLP
Trigger: GGGAAGATCATCCCCAGAGATGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAGCCCGTGAACAAAGGCAGCAGCTTCAGCGGCAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR GCA 90 bp AGCTGCTGCCTTTGTTCACGGGCTCTGTCTTCTGGGTTGAGAGGCTaGCCCTTGTCATCTCTGGGGATGATCTTCCCATGGAATGGGCAC +
Preference number: 1 (lower is better)
Translates to: SCCLCSRALSSGLRG*PLSSLGMIFPWNGH
Trigger: GTGCCCATTCCATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAGCCCGTGAACAAAGGCAGCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR GCA 90 bp TCGTGTTTCTTCTGGTCCATCTGGTTCATGGCAGCAACTACTCTCTaGACGGCTGCCTTGGCAAAGACCTTCTTCTCAAGGCGGGCCCGG +
Preference number: 1 (lower is better)
Translates to: SCFFWSIWFMAATTL*TAALAKTFFSRRAR
Trigger: CCGGGCCCGCCTTGAGAAGAAGGTCTTTGCCAAGGCAGCCGTGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACCAGAAGAAACACGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CCA 90 bp CTTTGCCTTTCTTGCTGGACCTGGATGAACCGAGGTCCACCCCTGTaGCTGCTTCCACGTCCTTCAGAAACTCAGGGTCCTGCCAATCTG +
Preference number: 1 (lower is better)
Translates to: LCLSCWTWMNRGPPL*LLPRPSETQGPANL
Trigger: CAGATTGGCAGGACCCTGAGTTTCTGAAGGACGTGGAAGCAGCCACAGGGGTGGACCTCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR TCA 90 bp GCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTaGATTGGAGGCCAGCGTGATCTACAAAATGAGTTACCGGACAGT +
Preference number: 1 (lower is better)
Translates to: APLVPGLGRQKQEDL*IGGQRDLQNELPDS
Trigger: ACTGTCCGGTAACTCATTTTGTAGATCACGCTGGCCTCCAATTCAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 90 bp ACTAGGGACACACTTACTGCCCAAGGGCTGGCCAGATGGAGTGCCTaGCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAAGGGATA +
Preference number: 1 (lower is better)
Translates to: TRDTLTAQGLARWSA*PYPTPMQVRHPEGI
Trigger: TATCCCTTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGCCAGCCCTTGGGCAGTAAGTGTGTCCCTAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp ACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTTGGAGACCAGCCTaGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACATAAAGAG +
Preference number: 1 (lower is better)
Translates to: TEEAEAGGSLSWRPA*STLWALRLPELHKE
Trigger: CTCTTTATGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp CTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTTaGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAG +
Preference number: 1 (lower is better)
Translates to: LNLNTEEAEAGGSLS*RPAWSTLWALRLPE
Trigger: CTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp GCTGGCTCCTGGTTCTGGTTTAAGGTGTGTGCTGGCTCCTGGTTCTaGTTTAAGGTGTGTGCTGGCTCCTGGTTTGCTCTTTGCATTCAT +
Preference number: 1 (lower is better)
Translates to: AGSWFWFKVCAGSWF*FKVCAGSWFALCIH
Trigger: ATGAATGCAAAGAGCAAACCAGGAGCCAGCACACACCTTAAACCAGAACCAGGAGCCAGCACACACCTTAAACCAGAACCAGGAGCCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp AGGACTGCTATCACAACATGGAAGAAACTTCAAAGGCAAAGAAGCTaGAACAGAAGGGCATACTCAGCCAGGAGCCATCGTACACGCCCT +
Preference number: 1 (lower is better)
Translates to: RTAITTWKKLQRQRS*NRRAYSARSHRTRP
Trigger: AGGGCGTGTACGATGGCTCCTGGCTGAGTATGCCCTTCTGTTCCAGCTTCTTTGCCTTTGAAGTTTCTTCCATGTTGTGATAGCAGTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 90 bp GCATGGAAAGAGAAAGCGGGCTTCGAGGTGGTCAGGCAGTTTGTCTaGACACTAAAGTTCTGGAAGCCAGTGGAGTCACTTGTTATACAC +
Preference number: 1 (lower is better)
Translates to: AWKEKAGFEVVRQFV*TLKFWKPVESLVIH
Trigger: GTGTATAACAAGTGACTCCACTGGCTTCCAGAACTTTAGTGTTCAGACAAACTGCCTGACCACCTCGAAGCCCGCTTTCTCTTTCCATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp GTGTGTGCTGGCTCCTGGTTCTGGTTTAAGGTGTGTGCTGGCTCCTaGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTAC +
Preference number: 1 (lower is better)
Translates to: VCAGSWFWFKVCAGS*FALCIHPLLCFSNY
Trigger: GTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAGCCAGCACACACCTTAAACCAGAACCAGGAGCCAGCACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 90 bp CCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGTaGGGTACCACATGTGTGGTTAAAATGGTTGGGAATCAAACCCTG +
Preference number: 1 (lower is better)
Translates to: PRIQVLFMSKCWDYR*GTTCVVKMVGNQTL
Trigger: CAGGGTTTGATTCCCAACCATTTTAACCACACATGTGGTACCTCACCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 90 bp CCCTTCACTGTTCTCCACTCTATTTACAGAGGCGGAGTCTCTTGCTaGATCCAGAATGCACTGATTTTGGCTAGTCTCCTTACTGAGTTT +
Preference number: 1 (lower is better)
Translates to: PFTVLHSIYRGGVSC*IQNALILASLLTEF
Trigger: AAACTCAGTAAGGAGACTAGCCAAAATCAGTGCATTCTGGATTCAGCAAGAGACTCCGCCTCTGTAAATAGAGTGGAGAACAGTGAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 90 bp GCTGGGTACAGTACTGTAAGTTGGTATCCATGGTCTTTTAGACCTTaGAGTACCCTGGTCCAGACTCTTCTGCCTTTTACAACTTCCACT +
Preference number: 1 (lower is better)
Translates to: AGYSTVSWYPWSFRP*STLVQTLLPFTTST
Trigger: AGTGGAAGTTGTAAAAGGCAGAAGAGTCTGGACCAGGGTACTTCAAGGTCTAAAAGACCATGGATACCAACTTACAGTACTGTACCCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 90 bp GTGTGTGCTGGCTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTaGTTCAGCAATTACAGCTTCACTTGTCTTCCTTGTCCTTTTTCC +
Preference number: 1 (lower is better)
Translates to: VCAGSWFALCIHPLL*FSNYSFTCLPCPFS
Trigger: GGAAAAAGGACAAGGAAGACAAGTGAAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAGCCAGCACACAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp ATGGTTGGGAATCAAACCCTGGCCTCACCACTAAACCATATCCCCTaGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACATA +
Preference number: 1 (lower is better)
Translates to: MVGNQTLASPLNHIP*PPGEYFNASLHCYI
Trigger: TATGTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTTTAGTGGTGAGGCCAGGGTTTGATTCCCAACCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp CTTTTTGTTCTTGTTTCTCAAGCAGTCTTGCTCTGTTATCCATACTaGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTAC +
Preference number: 1 (lower is better)
Translates to: LFVLVSQAVLLCYPY*PRIQVLFMSKCWDY
Trigger: GTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGGATAACAGAGCAAGACTGCTTGAGAAACAAGAACAAAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp CCCTGCCTGTTAAGTGTAAAAATTACAGGTGTGCGTCACCTCATCTaGCTTTTTGTTCTTGTTTCTCAAGCAGTCTTGCTCTGTTATCCA +
Preference number: 1 (lower is better)
Translates to: PCLLSVKITGVRHLI*LFVLVSQAVLLCYP
Trigger: TGGATAACAGAGCAAGACTGCTTGAGAAACAAGAACAAAAAGCCAGATGAGGTGACGCACACCTGTAATTTTTACACTTAACAGGCAGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 90 bp CATCATACAGTGAAATTAACCAGACCCAAAGTTTATCCATCTCAATaGAAGCTGTGGAGCTTCACACTGGATTCCACTTTCACCATCAAA +
Preference number: 1 (lower is better)
Translates to: HHTVKLTRPKVYPSQ*KLWSFTLDSTFTIK
Trigger: TTTGATGGTGAAAGTGGAATCCAGTGTGAAGCTCCACAGCTTTCATTGAGATGGATAAACTTTGGGTCTGGTTAATTTCACTGTATGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 90 bp ACAAAAGAGGTAAAACTAGAAAGAAGAGTTAACTGTCTTCTTTCATaGCTCAAGTGTTCGTCACCTACATCCAGTCCTTTCTTGGGTGAA +
Preference number: 1 (lower is better)
Translates to: TKEVKLERRVNCLLS*LKCSSPTSSPFLGE
Trigger: TTCACCCAAGAAAGGACTGGATGTAGGTGACGAACACTTGAGTCATGAAAGAAGACAGTTAACTCTTCTTTCTAGTTTTACCTCTTTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 90 bp AAGTGTTCGTCACCTACATCCAGTCCTTTCTTGGGTGAACTAATATaGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTAT +
Preference number: 1 (lower is better)
Translates to: KCSSPTSSPFLGELI*LYSACSVLLDFCIY
Trigger: ATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCATATTAGTTCACCCAAGAAAGGACTGGATGTAGGTGACGAACACTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 90 bp AAATTAAAATTCATGAATGTTTTGCTTGCATGTGTGTGCACCACATaGGTGCCTTGTGCACTTCTTCTAGTTTCTAACTTAATGGAGACT +
Preference number: 1 (lower is better)
Translates to: KLKFMNVLLACVCTT*VPCALLLVSNLMET
Trigger: AGTCTCCATTAAGTTAGAAACTAGAAGAAGTGCACAAGGCACGCATGTGGTGCACACACATGCAAGCAAAACATTCATGAATTTTAATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 90 bp ACATCCAGTCCTTTCTTGGGTGAACTAATATGGCTATACTCGGCTTaGAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATAT +
Preference number: 1 (lower is better)
Translates to: TSSPFLGELIWLYSA*SVLLDFCIYVHQRY
Trigger: ATATCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCATATTAGTTCACCCAAGAAAGGACTGGATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGAGGCAGGAGGATCTCTaGGTTGGAGACCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLRQEDL*VGDQPG
Trigger: ACCAGGCTGGTCTCCAACTCAGAGATCCTCCTGCCT...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CAA 90 bp GTCCTGCCAATCTGGATGTGCCTGCTGCCGCTGAAGCTGCTGCCTTaGTTCACGGGCTCTGTCTTCTGGGTTGAGAGGCTGCCCCTTGTC +
Preference number: 2 (lower is better)
Translates to: VLPIWMCLLPLKLLP*FTGSVFWVERLPLV
Trigger: GACAAGGGGCAGCCTCTCAACCCAGAAGACAGAGCCCGTGAACAAAGGCAGCAGCTTCAGCGGCAGCAGGCACATCCAGATTGGCAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGACCTGCCTTGCCTTCTaGGTGCTGGGATTAAAGATG +
Preference number: 2 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLTCLAF*VLGLKM
Trigger: CATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGT...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGGCTTTGAACTTGTATTaGTCTTCCTGCCCTGCCTGT +
Preference number: 2 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLALNLY*SSCPAC
Trigger: ACAGGCAGGGCAGGAAGATCAATACAAGTTCAAAGC...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGTTACTGCCCAAGGGCTaGCCAGATGGAGTGCCTGCC +
Preference number: 2 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVLLPKG*PDGVPA
Trigger: GGCAGGCACTCCATCTGGCCAGCCCTTGGGCAGTAA...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CAA 90 bp CGCTCTCGCAGATCCGTGAGGTTAGGGTGCTTCTTCTTTTTCCCTTaGCCTTTCTTGCTGGACCTGGATGAACCGAGGTCCACCCCTGTG +
Preference number: 2 (lower is better)
Translates to: RSRRSVRLGCFFFFP*PFLLDLDEPRSTPV
Trigger: CACAGGGGTGGACCTCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGAAAAAGAAGAAGCACCCTAACCTCACGGATCTGCGAGAGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CAA 90 bp AGATCCGTGAGGTTAGGGTGCTTCTTCTTTTTCCCTTTGCCTTTCTaGCTGGACCTGGATGAACCGAGGTCCACCCCTGTGGCTGCTTCC +
Preference number: 2 (lower is better)
Translates to: RSVRLGCFFFFPLPF*LDLDEPRSTPVAAS
Trigger: GGAAGCAGCCACAGGGGTGGACCTCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGAAAAAGAAGAAGCACCCTAACCTCACGGATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGCTCTGTCTTCTGGGTTaGGAGGCTGCCCCTTGTCAT +
Preference number: 2 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVLCLLG*EAAPCH
Trigger: ATGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAG...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR GCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCCTGCCAATCTGGATGTaGCTGCTGCCGCTGAAGCTG +
Preference number: 2 (lower is better)
Translates to: PSYTPLISILKRQRQEDLLPIWM*LLPLKL
Trigger: CAGCTTCAGCGGCAGCAGGCACATCCAGATTGGCAG...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGGTGCGTCACCTCATCTaGCTTTTTGTTCTTGTTTCT +
Preference number: 2 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLVRHLI*LFVLVS
Trigger: AGAAACAAGAACAAAAAGCCAGATGAGGTGACGCAC...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGACACCTGGTCCAGAGTaGTGCCAGGAGCTGGACATG +
Preference number: 2 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWTPGPE*CQELDM
Trigger: CATGTCCAGCTCCTGGCACCACTCTGGACCAGGTGT...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCAGGGCTCAACACACCTaGTCCAGAGTGGTGCCAGGA +
Preference number: 2 (lower is better)
Translates to: PSYTPLISILKRQRQEDLRAQHT*SRVVPG
Trigger: TCCTGGCACCACTCTGGACCAGGTGTGTTGAGCCCT...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGACGGGCTCTGTCTTCTaGGTTGAGAGGCTGCCCCTT +
Preference number: 2 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWTGSVF*VERLPL
Trigger: AAGGGGCAGCCTCTCAACCCAGAAGACAGAGCCCGT...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAATGCTGGGATTACAGGTaGGGTACCACATGTGTGGTT +
Preference number: 2 (lower is better)
Translates to: ARWSACPYPTPMQVRHPECWDYR*GTTCVV
Trigger: AACCACACATGTGGTACCTCACCTGTAATCCCAGCA...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACAACCTGCCTTGCCTTCTaGGTGCTGGGATTAAAGATG +
Preference number: 2 (lower is better)
Translates to: ELETSLVYTVGSKTARATTCLAF*VLGLKM
Trigger: CATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGT...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCAGGCAGGAGGATCTCTaGGTTGGAGACCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: LILASLLTEFAPEILSPLRQEDL*VGDQPG
Trigger: ACCAGGCTGGTCTCCAACTCAGAGATCCTCCTGCCT...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCTGCTGGGATTACAGGTaGGGTACCACATGTGTGGTT +
Preference number: 2 (lower is better)
Translates to: LHASALPAEPPPLSSAEVCWDYR*GTTCVV
Trigger: AACCACACATGTGGTACCTCACCTGTAATCCCAGCA...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAAGCTTTGAACTTGTATTaGTCTTCCTGCCCTGCCTGT +
Preference number: 2 (lower is better)
Translates to: ARWSACPYPTPMQVRHPEALNLY*SSCPAC
Trigger: ACAGGCAGGGCAGGAAGATCAATACAAGTTCAAAGC...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCTGTCATCTCTGGGGATaGTCTTCCCATGGAATGGGC +
Preference number: 2 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTCHLWG*SSHGMG
Trigger: GCCCATTCCATGGGAAGATCATCCCCAGAGATGACA...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR GCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCAGAAACTCAGGGTCCTaGCAATCTGGATGTGCCTGC +
Preference number: 2 (lower is better)
Translates to: PSYTPLISILKRQRQEDLRNSGS*QSGCAC
Trigger: GCAGGCACATCCAGATTGGCAGGACCCTGAGTTTCT...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGAGACCATGTCTCAAATaGGAGGGTGGGTGTGGCAAT +
Preference number: 2 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMRPCLK*EGGCGN
Trigger: ATTGCCACACCCACCCTCTCATTTGAGACATGGTCT...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCAAGCAGGAGGATCTCTaGATTGGAGGCCAGCGTGAT +
Preference number: 2 (lower is better)
Translates to: LILASLLTEFAPEILSPLKQEDL*IGGQRD
Trigger: ATCACGCTGGCCTCCAATTCAGAGATCCTCCTGCTT...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGTCCCTTTGCCTTTCTTaGTGGACCTGGATGAACCGA +
Preference number: 2 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMSLCLS*WTWMNR
Trigger: TCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGA...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCGGCGGAGTCTCTTGCTaGATCCAGAATGCACTGATT +
Preference number: 2 (lower is better)
Translates to: LILASLLTEFAPEILSPLGGVSC*IQNALI
Trigger: AATCAGTGCATTCTGGATTCAGCAAGAGACTCCGCC...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGGTAGTGAGTGACACCTaGTTCCTTCCTCTTTGCACT +
Preference number: 2 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWVVSDT*FLPLCT
Trigger: AGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTAC...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAACATGTGTGGTTAAAATaGTTGGGAATCAAACCCTGG +
Preference number: 2 (lower is better)
Translates to: ARWSACPYPTPMQVRHPEHVWLK*LGIKPW
Trigger: CCAGGGTTTGATTCCCAACCATTTTAACCACACATG...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATTTACTGCCCAAGGGCTaGCCAGATGGAGTGCCTGCC +
Preference number: 2 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNLLPKG*PDGVPA
Trigger: GGCAGGCACTCCATCTGGCCAGCCCTTGGGCAGTAA...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTGGGATGATCTTCCCATaGAATGGGCACTTCAGTCGA +
Preference number: 2 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSGMIFP*NGHFSR
Trigger: TCGACTGAAGTGCCCATTCCATGGGAAGATCATCCC...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CAA 90 bp GTGCTGGCTCCTGGTTCTGGTTTAAGGTGTGTGCTGGCTCCTGGTTaGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCT +
Preference number: 2 (lower is better)
Translates to: VLAPGSGLRCVLAPG*LFAFILFCASAITA
Trigger: AGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAGCCAGCACACACCTTAAACCAGAACCAGGAGCCAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCAGGCAGGAGGATCTCTaGGTTGGAGACCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSRQEDL*VGDQPG
Trigger: ACCAGGCTGGTCTCCAACTCAGAGATCCTCCTGCCT...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGGAGGTGGAAATGATGTaGGCACAGTCCTCTTGTATA +
Preference number: 2 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWEVEMM*AQSSCI
Trigger: TATACAAGAGGACTGTGCTCACATCATTTCCACCTC...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp TATGGCAGGAAGTTATGCTGGGTACAGTACTGTAAGTTGGTATCCATGGTCTTTTCTGGGTTGAGAGGCTaGCCCTTGTCATCTCTGGGG +
Preference number: 2 (lower is better)
Translates to: YGRKLCWVQYCKLVSMVFSGLRG*PLSSLG
Trigger: CCCCAGAGATGACAAGGGGCAGCCTCTCAACCCAGA...AAAGACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCAGGGCTCAACACACCTaGTCCAGAGTGGTGCCAGGA +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSRAQHT*SRVVPG
Trigger: TCCTGGCACCACTCTGGACCAGGTGTGTTGAGCCCT...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGACACTGTGCATAACCTaGGTGACTACATGGTATGTG +
Preference number: 2 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWTLCIT*VTTWYV
Trigger: CACATACCATGTAGTCACCCAGGTTATGCACAGTGT...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTAAGCGGGCTTCGAGGTaGTCAGGCAGTTTGTCTGAA +
Preference number: 2 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFKRASR*SGSLSE
Trigger: TTCAGACAAACTGCCTGACCACCTCGAAGCCCGCTT...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCTTTAGTCCCGGGGCTTaGGAGGCAGAAGCAGGAGGA +
Preference number: 2 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSFSPGA*EAEAGG
Trigger: TCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAA...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTTTAGTCCCGGGGCTTaGGAGGCAGAAGCAGGAGGA +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSFSPGA*EAEAGG
Trigger: TCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTTGCTGGGATTACAGGTaGGGTACCACATGTGTGGTT +
Preference number: 2 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFCWDYR*GTTCVV
Trigger: AACCACACATGTGGTACCTCACCTGTAATCCCAGCA...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTGTCAGGCAGTTTGTCTaGACACTAAAGTTCTGGAAG +
Preference number: 2 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSVRQFV*TLKFWK
Trigger: CTTCCAGAACTTTAGTGTTCAGACAAACTGCCTGAC...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCGTCAGGCAGTTTGTCTaGACACTAAAGTTCTGGAAG +
Preference number: 2 (lower is better)
Translates to: LILASLLTEFAPEILSPLVRQFV*TLKFWK
Trigger: CTTCCAGAACTTTAGTGTTCAGACAAACTGCCTGAC...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCAAGTGCTTTACCTGCTaGGCCACCTCCCTTGTCCTC +
Preference number: 2 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSKCFTC*ATSLVL
Trigger: GAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTT...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTGCAGCAACTACTCTCTaGACGGCTGCCTTGGCAAAG +
Preference number: 2 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLAATTL*TAALAK
Trigger: CTTTGCCAAGGCAGCCGTGCAGAGAGTAGTTGCTGC...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCAGTTCTGGAAGCCAGTaGAGTCACTTGTTATACACT +
Preference number: 2 (lower is better)
Translates to: PSYTPLISILKRQRQEDLSSGSQ*SHLLYT
Trigger: AGTGTATAACAAGTGACTCCACTGGCTTCCAGAACT...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCCAAAGGCAAAGAAGCTaGAACAGAAGGGCATACTCA +
Preference number: 2 (lower is better)
Translates to: LILASLLTEFAPEILSPLQRQRS*NRRAYS
Trigger: TGAGTATGCCCTTCTGTTCCAGCTTCTTTGCCTTTG...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTCTTTGCCTTTCTTGCTaGACCTGGATGAACCGAGGT +
Preference number: 2 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFLCLSC*TWMNRG
Trigger: ACCTCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAG...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp TATGGCAGGAAGTTATGCTGGGTACAGTACTGTAAGTTGGTATCCATGGTCTTTAAGCAGGAGGATCTCTaGATTGGAGGCCAGCGTGAT +
Preference number: 2 (lower is better)
Translates to: YGRKLCWVQYCKLVSMVFKQEDL*IGGQRD
Trigger: ATCACGCTGGCCTCCAATTCAGAGATCCTCCTGCTT...AAAGACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTACACCAGTGATGGCATaGAGCCCTCAGGAAGCAGAG +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLTPVMA*SPQEAE
Trigger: CTCTGCTTCCTGAGGGCTTCATGCCATCACTGGTGT...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGATCCACCTGCCTTaGCTTCTGAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNEIHLP*LLSAGI
Trigger: AATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTC...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGCCCAATTACTCTAAATaGATAGGCATGGAAAGAGAA +
Preference number: 2 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVPNYSK*IGMERE
Trigger: TTCTCTTTCCATGCCTATGCATTTAGAGTAATTGGG...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGCATGTGTGGTTAAAATaGTTGGGAATCAAACCCTGG +
Preference number: 2 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRHVWLK*LGIKPW
Trigger: CCAGGGTTTGATTCCCAACCATTTTAACCACACATG...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGATATGCATGAAAGGGTaGATTGCTGAAGGCATCATA +
Preference number: 2 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMICMKG*IAEGII
Trigger: TATGATGCCTTCAGCAATCCACCCTTTCATGCATAT...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGACGAGGTCCACCCCTGTaGCTGCTTCCACGTCCTTCA +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRRGPPL*LLPRPS
Trigger: TGAAGGACGTGGAAGCAGCCACAGGGGTGGACCTCG...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CAA 90 bp GTGCGTCACCTCATCTGGCTTTTTGTTCTTGTTTCTCAAGCAGTCTaGCTCTGTTATCCATACTGGCCTAGGATTCAGGTCCTGTTTATG +
Preference number: 2 (lower is better)
Translates to: VRHLIWLFVLVSQAV*LCYPYWPRIQVLFM
Trigger: CATAAACAGGACCTGAATCCTAGGCCAGTATGGATAACAGAGCAAGACTGCTTGAGAAACAAGAACAAAAAGCCAGATGAGGTGACGCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTGGCGGAGTCTCTTGCTaGATCCAGAATGCACTGATT +
Preference number: 2 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLGGVSC*IQNALI
Trigger: AATCAGTGCATTCTGGATTCAGCAAGAGACTCCGCC...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTGTTGTTGCCCTTAGCTaGCTCCCAGAACATGACGGT +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLVVALS*LPEHDG
Trigger: ACCGTCATGTTCTGGGAGGCAGCTAAGGGCAACAAC...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTATATGCATGAAAGGGTaGATTGCTGAAGGCATCATA +
Preference number: 2 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSICMKG*IAEGII
Trigger: TATGATGCCTTCAGCAATCCACCCTTTCATGCATAT...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAACACCTGGTCCAGAGTaGTGCCAGGAGCTGGACATG +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRTPGPE*CQELDM
Trigger: CATGTCCAGCTCCTGGCACCACTCTGGACCAGGTGT...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCATTTAGTCCCGGGGCTTaGGAGGCAGAAGCAGGAGGA +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSFSPGA*EAEAGG
Trigger: TCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAA...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCGTGTGTGCTGGCTCCTaGTTCTGGTTTAAGGTGTGT +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSVCAGS*FWFKVC
Trigger: ACACACCTTAAACCAGAACCAGGAGCCAGCACACAC...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCGGTCCATCTGGTTCATaGCAGCAACTACTCTCTGCA +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSGPSGS*QQLLSA
Trigger: TGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACC...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTACCTGCCTTGCCTTCTaGGTGCTGGGATTAAAGATG +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLTCLAF*VLGLKM
Trigger: CATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGT...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTAGACCATGTCTCAAATaGGAGGGTGGGTGTGGCAAT +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLRPCLK*EGGCGN
Trigger: ATTGCCACACCCACCCTCTCATTTGAGACATGGTCT...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTGTATTAAACAGCATATaGATGAAAGGGTGGATTGCT +
Preference number: 2 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSVLNSI*MKGWIA
Trigger: AGCAATCCACCCTTTCATGCATATGCTGTTTAATAC...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp TGTTTACCTATGTGTGGGCAGATGTCTATGGGCATATGTGAATTTTCATATTATCCTGGTCCAGAGTGGTaGCAGGAGCTGGACATGTGT +
Preference number: 2 (lower is better)
Translates to: CLPMCGQMSMGICEFSYYPGPEW*QELDMC
Trigger: ACACATGTCCAGCTCCTGGCACCACTCTGGACCAGG...ATAATATGAAAATTCACATATGCCCATAGACATCTGCCCACACATAGGTAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTTGCTGGCTCCTGGTTTaGTCTTTGCATTCATCCTCT +
Preference number: 2 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLCWLLV*SLHSSS
Trigger: AGAGGATGAATGCAAAGAGCAAACCAGGAGCCAGCA...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCTGCTGGCTCCTGGTTTaGTCTTTGCATTCATCCTCT +
Preference number: 2 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSCWLLV*SLHSSS
Trigger: AGAGGATGAATGCAAAGAGCAAACCAGGAGCCAGCA...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCGTAGTGAGTGACACCTaGTTCCTTCCTCTTTGCACT +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSVVSDT*FLPLCT
Trigger: AGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTAC...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TGTTTACCTATGTGTGGGCAGATGTCTATGGGCATATGTGAATTTTCATATTATACACCTGGTCCAGAGTaGTGCCAGGAGCTGGACATG +
Preference number: 2 (lower is better)
Translates to: CLPMCGQMSMGICEFSYYTPGPE*CQELDM
Trigger: CATGTCCAGCTCCTGGCACCACTCTGGACCAGGTGT...ATAATATGAAAATTCACATATGCCCATAGACATCTGCCCACACATAGGTAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTAAGGGCTCAACACACCTaGTCCAGAGTGGTGCCAGGA +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLRAQHT*SRVVPG
Trigger: TCCTGGCACCACTCTGGACCAGGTGTGTTGAGCCCT...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TATGGCAGGAAGTTATGCTGGGTACAGTACTGTAAGTTGGTATCCATGGTCTTTGTGTGTGCTGGCTCCTaGTTTGCTCTTTGCATTCAT +
Preference number: 2 (lower is better)
Translates to: YGRKLCWVQYCKLVSMVFVCAGS*FALCIH
Trigger: ATGAATGCAAAGAGCAAACCAGGAGCCAGCACACAC...AAAGACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTTCTGCACGGCTGCCTTaGCAAAGACCTTCTTCTCAA +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLSARLP*QRPSSQ
Trigger: TTGAGAAGAAGGTCTTTGCCAAGGCAGCCGTGCAGA...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCGTCAGGCAGTTTGTCTaGACACTAAAGTTCTGGAAG +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSVRQFV*TLKFWK
Trigger: CTTCCAGAACTTTAGTGTTCAGACAAACTGCCTGAC...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTAAAGTGCTTTACCTGCTaGGCCACCTCCCTTGTCCTC +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLKCFTC*ATSLVL
Trigger: GAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTT...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTCTTGCCCCTGTCTCCTaGGTGCTTGAATTAAAGGTA +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLLAPVS*VLELKV
Trigger: TACCTTTAATTCAAGCACTCAGGAGACAGGGGCAAG...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATCCACCTGCCTTaGCTTCTGAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSEIHLP*LLSAGI
Trigger: AATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTC...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGTTGTTGCCCTTAGCTaGCTCCCAGAACATGACGGT +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSVVALS*LPEHDG
Trigger: ACCGTCATGTTCTGGGAGGCAGCTAAGGGCAACAAC...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATTCCGTGAGGTTAGGGTaGTTCTTCTTTTTCCCTTTG +
Preference number: 2 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNSVRLG*FFFFPL
Trigger: CAAAGGGAAAAAGAAGAAGCACCCTAACCTCACGGA...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCACACTGTGCATAACCTaGGTGACTACATGGTATGTG +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSTLCIT*VTTWYV
Trigger: CACATACCATGTAGTCACCCAGGTTATGCACAGTGT...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATCAAAGGCAAAGAAGCTaGAACAGAAGGGCATACTCA +
Preference number: 2 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNQRQRS*NRRAYS
Trigger: TGAGTATGCCCTTCTGTTCCAGCTTCTTTGCCTTTG...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CAA 90 bp AAACCAGTGTTTCTTGACTGGGGAGCTAAGGATATTATTAAAACCTaGTTCTGGTTAAAGGTGTGTGCTGGCTCCTGGTTCTGGTTTAAG +
Preference number: 2 (lower is better)
Translates to: KPVFLDWGAKDIIKT*FWLKVCAGSWFWFK
Trigger: CTTAAACCAGAACCAGGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCCCCAGTCAAGAAACACTGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGGCGGAGTCTCTTGCTaGATCCAGAATGCACTGATT +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSGGVSC*IQNALI
Trigger: AATCAGTGCATTCTGGATTCAGCAAGAGACTCCGCC...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTATGGCAGGAAGTTATaGTGGGTACAGTACTGTAAG +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSYGRKL*WVQYCK
Trigger: CTTACAGTACTGTACCCAGCATAACTTCCTGCCATA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTTCTTCTTTTTCCCTTTaGCTTTCTTGCTGGACCTGG +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLSSFSL*LSCWTW
Trigger: CCAGGTCCAGCAAGAAAGGCAAAGGGAAAAAGAAGA...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATCATGTGTGGTTAAAATaGTTGGGAATCAAACCCTGG +
Preference number: 2 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNHVWLK*LGIKPW
Trigger: CCAGGGTTTGATTCCCAACCATTTTAACCACACATG...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTGAGGTACCACATGTGTaGTTAAAATGGTTGGGAATC +
Preference number: 2 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLEVPHV*LKWLGI
Trigger: GATTCCCAACCATTTTAACCACACATGTGGTACCTC...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAGACCTTGAAGTACCCTaGTCCAGACTCTTCTGCCTT +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRDLEVP*SRLFCL
Trigger: AAGGCAGAAGAGTCTGGACCAGGGTACTTCAAGGTC...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CAA 90 bp CATATTCAGCACACCCACACCCTTTTACTTCAGCGCATAATTAAATaGGTTTGCAAACTTCTCGTGTTTCTTCTGGTCCATCTGGTTCAT +
Preference number: 2 (lower is better)
Translates to: HIQHTHTLLLQRIIK*VCKLLVFLLVHLVH
Trigger: ATGAACCAGATGGACCAGAAGAAACACGAGAAGTTTGCAAACCAATTTAATTATGCGCTGAAGTAAAAGGGTGTGGGTGTGCTGAATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGACTTGCCCCTGTCTCCTaGGTGCTTGAATTAAAGGTA +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRLAPVS*VLELKV
Trigger: TACCTTTAATTCAAGCACTCAGGAGACAGGGGCAAG...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTATTTCATTGGTGCCATaGTGGTTCCAGTTCAACTTG +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLISLVP*WFQFNL
Trigger: CAAGTTGAACTGGAACCATCATGGCACCAATGAAAT...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTTCCTGGTTTGCTCTTTaGATTCATCCTCTTTTGTGC +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLSWFAL*IHPLLC
Trigger: GCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGA...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAGTAGTGAGTGACACCTaGTTCCTTCCTCTTTGCACT +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRVVSDT*FLPLCT
Trigger: AGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTAC...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAAACTCAAGATTTGCTTaGCCCTGTCTCCTGAGTGCT +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRNSRFA*PCLLSA
Trigger: AGCACTCAGGAGACAGGGGCAAGCAAATCTTGAGTT...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTAGACCTTGAAGTACCCTaGTCCAGACTCTTCTGCCTT +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLDLEVP*SRLFCL
Trigger: AAGGCAGAAGAGTCTGGACCAGGGTACTTCAAGGTC...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCATTAAAACCTTGTTCTaGTTAAAGGTGTGTGCTGGC +
Preference number: 2 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSIKTLF*LKVCAG
Trigger: GCCAGCACACACCTTTAACCAGAACAAGGTTTTAAT...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCACCAGTTTGGTGGGCATaGATTCTTTTGGCGTGTTTA +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSPVWWA*ILLACL
Trigger: TAAACACGCCAAAAGAATTCATGCCCACCAAACTGG...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATCCCAATTACTCTAAATaGATAGGCATGGAAAGAGAA +
Preference number: 2 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNPNYSK*IGMERE
Trigger: TTCTCTTTCCATGCCTATGCATTTAGAGTAATTGGG...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATGGTCCAGACTCTTCTaGCTTTTACAACTTCCACTG +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRWSRLF*LLQLPL
Trigger: CAGTGGAAGTTGTAAAAGGCAGAAGAGTCTGGACCA...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTAAACTCAAGATTTGCTTaGCCCTGTCTCCTGAGTGCT +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLNSRFA*PCLLSA
Trigger: AGCACTCAGGAGACAGGGGCAAGCAAATCTTGAGTT...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAACACTGTGCATAACCTaGGTGACTACATGGTATGTG +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSTLCIT*VTTWYV
Trigger: CACATACCATGTAGTCACCCAGGTTATGCACAGTGT...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGTGTTTACCTATGTGTaGGCAGATGTCTATGGGCAT +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSVFTYV*ADVYGH
Trigger: ATGCCCATAGACATCTGCCCACACATAGGTAAACAC...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTTTTTACAACTTCCACTaGGAATCAGCTGTTGTTTTG +
Preference number: 2 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLFYNFH*ESAVVL
Trigger: CAAAACAACAGCTGATTCCCAGTGGAAGTTGTAAAA...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATTCTCGTGTTTCTTCTaGTCCATCTGGTTCATGGCA +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRFSCFF*SIWFMA
Trigger: TGCCATGAACCAGATGGACCAGAAGAAACACGAGAA...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTAGAGGTGGAAATGATGTaGGCACAGTCCTCTTGTATA +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLEVEMM*AQSSCI
Trigger: TATACAAGAGGACTGTGCTCACATCATTTCCACCTC...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAATTTCATTGGTGCCATaGTGGTTCCAGTTCAACTTG +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSISLVP*WFQFNL
Trigger: CAAGTTGAACTGGAACCATCATGGCACCAATGAAAT...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR TCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATTGGCTGTAGGTCTGTaGAAATCTGGTGGAATTTTC +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRLAVGL*KSGGIF
Trigger: GAAAATTCCACCAGATTTTCACAGACCTACAGCCAA...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTGTATTAAACAGCATATaGATGAAAGGGTGGATTGCT +
Preference number: 2 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLVLNSI*MKGWIA
Trigger: AGCAATCCACCCTTTCATGCATATGCTGTTTAATAC...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATATGGCAGGAAGTTATaGTGGGTACAGTACTGTAAG +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRYGRKL*WVQYCK
Trigger: CTTACAGTACTGTACCCAGCATAACTTCCTGCCATA...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAACTGGATTTCATTGGTaGCATGATGGTTCCAGTTCA +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSTGFHW*HDGSSS
Trigger: TGAACTGGAACCATCATGGCACCAATGAAATCCAGT...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGGTACCACATGTGTaGTTAAAATGGTTGGGAATC +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSEVPHV*LKWLGI
Trigger: GATTCCCAACCATTTTAACCACACATGTGGTACCTC...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAGTGCGTCACCTCATCTaGCTTTTTGTTCTTGTTTCT +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRVRHLI*LFVLVS
Trigger: AGAAACAAGAACAAAAAGCCAGATGAGGTGACGCAC...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAAGTTCTGGAAGCCAGTaGAGTCACTTGTTATACACT +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSSSGSQ*SHLLYT
Trigger: AGTGTATAACAAGTGACTCCACTGGCTTCCAGAACT...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTACAGTACTGTAAGTTaGTATCCATGGTCTTTTAGA +
Preference number: 2 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSYSTVS*YPWSFR
Trigger: TCTAAAAGACCATGGATACCAACTTACAGTACTGTA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGGGCATGAATTCTTTTaGCGTGTTTATACCACAGAG +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSGHEFF*RVYTTE
Trigger: CTCTGTGGTATAAACACGCCAAAAGAATTCATGCCC...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TGTTTACCTATGTGTGGGCAGATGTCTATGGGCATATGTGAATTTTCATATTATTTCTTCTGGTCCATCTaGTTCATGGCAGCAACTACT +
Preference number: 2 (lower is better)
Translates to: CLPMCGQMSMGICEFSYYFFWSI*FMAATT
Trigger: AGTAGTTGCTGCCATGAACCAGATGGACCAGAAGAA...ATAATATGAAAATTCACATATGCCCATAGACATCTGCCCACACATAGGTAAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR TCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTAACCTCCTGGCCAATATaGTCTATTTTGGGTATTTGG +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLTSWPI*SILGIW
Trigger: CCAAATACCCAAAATAGATCATATTGGCCAGGAGGT...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTATCCTGGTTTGCTCTTTaGATTCATCCTCTTTTGTGC +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLSWFAL*IHPLLC
Trigger: GCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGA...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTACTTAATTCCACCATTTaGAAGGAAGAAGCAGGCAGA +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLLNSTI*KEEAGR
Trigger: TCTGCCTGCTTCTTCCTTCCAAATGGTGGAATTAAG...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAATTCATCCTCTTTTGTaGTTCAGCAATTACAGCTTC +
Preference number: 2 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSIHPLL*FSNYSF
Trigger: GAAGCTGTAATTGCTGAAGCACAAAAGAGGATGAAT...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATTTTACAACTTCCACTaGGAATCAGCTGTTGTTTTG +
Preference number: 2 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRFYNFH*ESAVVL
Trigger: CAAAACAACAGCTGATTCCCAGTGGAAGTTGTAAAA...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CAA 90 bp TGCATCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTaGTTGTTGCCTACATGGTTTTTGGCATTAAAAATGTTCCTTCTG +
Preference number: 2 (lower is better)
Translates to: CIYVHQRYLPISEIL*LLPTWFLALKMFLL
Trigger: CAGAAGGAACATTTTTAATGCCAAAAACCATGTAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGATGCA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR GCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTACCCAATTACTCTAAATaGATAGGCATGGAAAGAGAA +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLPNYSK*IGMERE
Trigger: TTCTCTTTCCATGCCTATGCATTTAGAGTAATTGGG...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTAAGGTCTGTGAAAATCTaGTGGAATTTTCCTGTGAAT +
Preference number: 2 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLRSVKI*WNFPVN
Trigger: ATTCACAGGAAAATTCCACCAGATTTTCACAGACCT...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp GAGACAGGCCATGGTGGCGCCTTTAGTCCCGGGGCTTaGGAGGCAGAAGCAGGAGGATCTCTGAATTGGAGG +
Preference number: 3 (lower is better)
Translates to: ETGHGGAFSPGA*EAEAGGSLNWR
Trigger: CCTCCAATTCAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATGGCCTGTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGAGGAGGATCTCTGAGTaGGAGACCAGCCTGGTCTAC +
Preference number: 3 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLRRISE*ETSLVY
Trigger: GTAGACCAGGCTGGTCTCCAACTCAGAGATCCTCCT...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp ATGATCTTCCCATGGAATGGGCACTTCAGTCGATCCTaGCGCTCGCAGAGCCTGCCATTAGGCCTCAGGGCC +
Preference number: 3 (lower is better)
Translates to: MIFPWNGHFSRS*RSQSLPLGLRA
Trigger: GGCCCTGAGGCCTAATGGCAGGCTCTGCGAGCGCCAGGATCGACTGAAGTGCCCATTCCATGGGAAGATCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CCA 72 bp GGCTGCCCCTTGTCATCTCTGGGGATGATCTTCCCATaGAATGGGCACTTCAGTCGATCCTGGCGCTCGCAG +
Preference number: 3 (lower is better)
Translates to: GCPLSSLGMIFP*NGHFSRSWRSQ
Trigger: CTGCGAGCGCCAGGATCGACTGAAGTGCCCATTCCATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR TCA 72 bp TCAGGGTCCTGCCAATCTGGATGTGCCTGCTGCCGCTaGAGCTGCTGCCTTTGTTCACGGGCTCTGTCTTCT +
Preference number: 3 (lower is better)
Translates to: SGSCQSGCACCR*SCCLCSRALSS
Trigger: AGAAGACAGAGCCCGTGAACAAAGGCAGCAGCTTCAGCGGCAGCAGGCACATCCAGATTGGCAGGACCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CCA 72 bp TCTTGCTGGACCTGGATGAACCGAGGTCCACCCCTGTaGCTGCTTCCACGTCCTTCAGAAACTCAGGGTCCT +
Preference number: 3 (lower is better)
Translates to: SCWTWMNRGPPL*LLPRPSETQGP
Trigger: AGGACCCTGAGTTTCTGAAGGACGTGGAAGCAGCCACAGGGGTGGACCTCGGTTCATCCAGGTCCAGCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CAA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGGCTGAGCCACCTCCCTaGTCCTCTGCTGAGGTCCGT +
Preference number: 3 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMAEPPP*SSAEVR
Trigger: ACGGACCTCAGCAGAGGACAAGGGAGGTGGCTCAGC...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 72 bp GTCCTTCAGAAACTCAGGGTCCTGCCAATCTGGATGTaGCTGCTGCCGCTGAAGCTGCTGCCTTTGTTCACG +
Preference number: 3 (lower is better)
Translates to: VLQKLRVLPIWM*LLPLKLLPLFT
Trigger: CGTGAACAAAGGCAGCAGCTTCAGCGGCAGCAGGCACATCCAGATTGGCAGGACCCTGAGTTTCTGAAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CCA 72 bp ATAGCACCACTAGGGACACACTTACTGCCCAAGGGCTaGCCAGATGGAGTGCCTGCCCCTATCCAACTCCAA +
Preference number: 3 (lower is better)
Translates to: IAPLGTHLLPKG*PDGVPAPIQLQ
Trigger: TTGGAGTTGGATAGGGGCAGGCACTCCATCTGGCCAGCCCTTGGGCAGTAAGTGTGTCCCTAGTGGTGCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp GCAGAGGCAGGAGGATCTCTGAGTTGGAGACCAGCCTaGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTA +
Preference number: 3 (lower is better)
Translates to: AEAGGSLSWRPA*STLWALRLPEL
Trigger: TAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTCAGAGATCCTCCTGCCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp CTGAAGCTGCTGCCTTTGTTCACGGGCTCTGTCTTCTaGGTTGAGAGGCTGCCCCTTGTCATCTCTGGGGAT +
Preference number: 3 (lower is better)
Translates to: LKLLPLFTGSVF*VERLPLVISGD
Trigger: ATCCCCAGAGATGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAGCCCGTGAACAAAGGCAGCAGCTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CAA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTGCTGAGCCACCTCCCTaGTCCTCTGCTGAGGTCCGT +
Preference number: 3 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSAEPPP*SSAEVR
Trigger: ACGGACCTCAGCAGAGGACAAGGGAGGTGGCTCAGC...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAACTGAAGCTGCTGCCTTaGTTCACGGGCTCTGTCTTC +
Preference number: 3 (lower is better)
Translates to: ARWSACPYPTPMQVRHPELKLLP*FTGSVF
Trigger: GAAGACAGAGCCCGTGAACAAAGGCAGCAGCTTCAG...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CAA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGGCTCTGTCTTCTGGGTaGAGAGGCTGCCCCTTGTCA +
Preference number: 3 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWALSSG*RGCPLS
Trigger: TGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAGC...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CAA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTGCTGAGCCACCTCCCTaGTCCTCTGCTGAGGTCCGT +
Preference number: 3 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFAEPPP*SSAEVR
Trigger: ACGGACCTCAGCAGAGGACAAGGGAGGTGGCTCAGC...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 72 bp TTCTGGTCCATCTGGTTCATGGCAGCAACTACTCTCTaGACGGCTGCCTTGGCAAAGACCTTCTTCTCAAGG +
Preference number: 3 (lower is better)
Translates to: FWSIWFMAATTL*TAALAKTFFSR
Trigger: CCTTGAGAAGAAGGTCTTTGCCAAGGCAGCCGTGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACCAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR CCA 72 bp GGATCTCTGAGTTGGAGACCAGCCTGGTCTACACTGTaGGCTCTAAGACTGCCAGAGCTACATAAAGAGACC +
Preference number: 3 (lower is better)
Translates to: GSLSWRPAWSTL*ALRLPELHKET
Trigger: GGTCTCTTTATGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTCAGAGATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAAGTGTGGTTAAAATGGTaGGGAATCAAACCCTGGCCT +
Preference number: 3 (lower is better)
Translates to: ARWSACPYPTPMQVRHPEVWLKW*GIKPWP
Trigger: AGGCCAGGGTTTGATTCCCAACCATTTTAACCACAC...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCAGGAGGATCTCTGAGTaGGAGACCAGCCTGGTCTAC +
Preference number: 3 (lower is better)
Translates to: LILASLLTEFAPEILSPLRRISE*ETSLVY
Trigger: GTAGACCAGGCTGGTCTCCAACTCAGAGATCCTCCT...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGTGTGGTTAAAATGGTaGGGAATCAAACCCTGGCCT +
Preference number: 3 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVVWLKW*GIKPWP
Trigger: AGGCCAGGGTTTGATTCCCAACCATTTTAACCACAC...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAAGTTTCTCAAGCAGTCTaGCTCTGTTATCCATACTGG +
Preference number: 3 (lower is better)
Translates to: ARWSACPYPTPMQVRHPEVSQAV*LCYPYW
Trigger: CCAGTATGGATAACAGAGCAAGACTGCTTGAGAAAC...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp GAGAAAGCGGGCTTCGAGGTGGTCAGGCAGTTTGTCTaGACACTAAAGTTCTGGAAGCCAGTGGAGTCACTT +
Preference number: 3 (lower is better)
Translates to: EKAGFEVVRQFV*TLKFWKPVESL
Trigger: AAGTGACTCCACTGGCTTCCAGAACTTTAGTGTTCAGACAAACTGCCTGACCACCTCGAAGCCCGCTTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp AAGGTAGGAACAGACCAAACATCAATAACAAATCCATaGAGACAGGCCATGGTGGCGCCTTTAGTCCCGGGG +
Preference number: 3 (lower is better)
Translates to: KVGTDQTSITNP*RQAMVAPLVPG
Trigger: CCCCGGGACTAAAGGCGCCACCATGGCCTGTCTCCATGGATTTGTTATTGATGTTTGGTCTGTTCCTACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp TGGTTTGCAAACTTCTCGTGTTTCTTCTGGTCCATCTaGTTCATGGCAGCAACTACTCTCTGCACGGCTGCC +
Preference number: 3 (lower is better)
Translates to: WFANFSCFFWSI*FMAATTLCTAA
Trigger: GGCAGCCGTGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACCAGAAGAAACACGAGAAGTTTGCAAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR-3UTR CAA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGCTGCTTCCTTCCTCTTaGCACTTGCTTGGGATACTT +
Preference number: 3 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWLLPSS*HLLGIL
Trigger: AAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAG...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp ACAGAGGCGGAGTCTCTTGCTGAATCCAGAATGCACTaGTTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAG +
Preference number: 3 (lower is better)
Translates to: TEAESLAESRMH*FWLVSLLSLPQ
Trigger: CTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAGTGCATTCTGGATTCAGCAAGAGACTCCGCCTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCGTTTCTCAAGCAGTCTaGCTCTGTTATCCATACTGG +
Preference number: 3 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTVSQAV*LCYPYW
Trigger: CCAGTATGGATAACAGAGCAAGACTGCTTGAGAAAC...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCCCATTCACTGTGATTTaGTGTGTGTGTGTGTTTACC +
Preference number: 3 (lower is better)
Translates to: LHASALPAEPPPLSSAEVPFTVI*CVCVFT
Trigger: GGTAAACACACACACACACAAAATCACAGTGAATGG...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGCTCTCTAGGACCAGTTaGGTGGGCATGAATTCTTTT +
Preference number: 3 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWLSRTS*VGMNSF
Trigger: AAAAGAATTCATGCCCACCAAACTGGTCCTAGAGAG...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACATCTGCTTATGTAAGTTaGGCTGGCTTAGAATTTACA +
Preference number: 3 (lower is better)
Translates to: ELETSLVYTVGSKTARATSAYVS*AGLEFT
Trigger: TGTAAATTCTAAGCCAGCCAAACTTACATAAGCAGA...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTAGGAGGATCTCTGAGTaGGAGACCAGCCTGGTCTAC +
Preference number: 3 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLRRISE*ETSLVY
Trigger: GTAGACCAGGCTGGTCTCCAACTCAGAGATCCTCCT...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCTCTGCTTATGTAAGTTaGGCTGGCTTAGAATTTACA +
Preference number: 3 (lower is better)
Translates to: LHASALPAEPPPLSSAEVSAYVS*AGLEFT
Trigger: TGTAAATTCTAAGCCAGCCAAACTTACATAAGCAGA...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp TCCACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTaGGTTCAAGGCCCACCTGGTTTATATAGCAGGCTA +
Preference number: 3 (lower is better)
Translates to: STIWKEEAGRSL*VQGPPGLYSRL
Trigger: TAGCCTGCTATATAAACCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGGATTACCATAACCACTaGACTTTTATATGGACTCAG +
Preference number: 3 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMDYHNH*TFIWTQ
Trigger: CTGAGTCCATATAAAAGTCAAGTGGTTATGGTAATC...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGGATTACCATAACCACTaGACTTTTATATGGACTCAG +
Preference number: 3 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWDYHNH*TFIWTQ
Trigger: CTGAGTCCATATAAAAGTCAAGTGGTTATGGTAATC...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp CAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGTaGGGTACCACATGTGTGGTTAAAATGGTTGGGAAT +
Preference number: 3 (lower is better)
Translates to: QVLFMSKCWDYR*GTTCVVKMVGN
Trigger: ATTCCCAACCATTTTAACCACACATGTGGTACCTCACCTGTAATCCCAGCACTTGGACATAAACAGGACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp GTTCTCCACTCTATTTACAGAGGCGGAGTCTCTTGCTaGATCCAGAATGCACTGATTTTGGCTAGTCTCCTT +
Preference number: 3 (lower is better)
Translates to: VLHSIYRGGVSC*IQNALILASLL
Trigger: AAGGAGACTAGCCAAAATCAGTGCATTCTGGATTCAGCAAGAGACTCCGCCTCTGTAAATAGAGTGGAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 72 bp GGTGCCAGGAGCTGGACATGTGTATTAAACAGCATATaGATGAAAGGGTGGATTGCTGAAGGCATCATAAAG +
Preference number: 3 (lower is better)
Translates to: GARSWTCVLNSI*MKGWIAEGIIK
Trigger: CTTTATGATGCCTTCAGCAATCCACCCTTTCATGCATATGCTGTTTAATACACATGTCCAGCTCCTGGCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 72 bp TGGTTTAAGGTGTGTGCTGGCTCCTGGTTTGCTCTTTaGATTCATCCTCTTTTGTGCTTCAGCAATTACAGC +
Preference number: 3 (lower is better)
Translates to: WFKVCAGSWFAL*IHPLLCFSNYS
Trigger: GCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAGCCAGCACACACCTTAAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp CTTGTTTCTCAAGCAGTCTTGCTCTGTTATCCATACTaGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGC +
Preference number: 3 (lower is better)
Translates to: LVSQAVLLCYPY*PRIQVLFMSKC
Trigger: GCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGGATAACAGAGCAAGACTGCTTGAGAAACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp CCTGGTCCAGACTCTTCTGCCTTTTACAACTTCCACTaGGAATCAGCTGTTGTTTTGATGGGTTTCCTTTAC +
Preference number: 3 (lower is better)
Translates to: PGPDSSAFYNFH*ESAVVLMGFLY
Trigger: GTAAAGGAAACCCATCAAAACAACAGCTGATTCCCAGTGGAAGTTGTAAAAGGCAGAAGAGTCTGGACCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTCCATTCACTGTGATTTaGTGTGTGTGTGTGTTTACC +
Preference number: 3 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFPFTVI*CVCVFT
Trigger: GGTAAACACACACACACACAAAATCACAGTGAATGG...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp GACTGGGGAGCTAAGGATATTATTAAAACCTTGTTCTaGTTAAAGGTGTGTGCTGGCTCCTGGTTCTGGTTT +
Preference number: 3 (lower is better)
Translates to: DWGAKDIIKTLF*LKVCAGSWFWF
Trigger: AAACCAGAACCAGGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCCCCAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp TCCTTCCTTGTGACAGGTCTGCTTAGGAGGCACTGGTaGTATAATGTTATAGGTCTGTTTAGGTTGTCACTT +
Preference number: 3 (lower is better)
Translates to: SFLVTGLLRRHW*YNVIGLFRLSL
Trigger: AAGTGACAACCTAAACAGACCTATAACATTATACCACCAGTGCCTCCTAAGCAGACCTGTCACAAGGAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp ATCTCCTTCCTTGTGACAGGTCTGCTTAGGAGGCACTaGTGGTATAATGTTATAGGTCTGTTTAGGTTGTCA +
Preference number: 3 (lower is better)
Translates to: ISFLVTGLLRRH*WYNVIGLFRLS
Trigger: TGACAACCTAAACAGACCTATAACATTATACCACCAGTGCCTCCTAAGCAGACCTGTCACAAGGAAGGAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCGTTTCTCAAGCAGTCTaGCTCTGTTATCCATACTGG +
Preference number: 3 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSVSQAV*LCYPYW
Trigger: CCAGTATGGATAACAGAGCAAGACTGCTTGAGAAAC...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCAGCCAGTGGAGTCACTaGTTATACACTGTGCATAAC +
Preference number: 3 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSSQWSH*LYTVHN
Trigger: GTTATGCACAGTGTATAACAAGTGACTCCACTGGCT...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCCTCTCTAGGACCAGTTaGGTGGGCATGAATTCTTTT +
Preference number: 3 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSLSRTS*VGMNSF
Trigger: AAAAGAATTCATGCCCACCAAACTGGTCCTAGAGAG...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATTCCCTTTGCCTTTCTaGCTGGACCTGGATGAACCG +
Preference number: 3 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRFPLPF*LDLDEP
Trigger: CGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGAA...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
3UTR TCA 72 bp GAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATaGCAAAATATGACTCCATTCACTGTGATTTTGTGT +
Preference number: 3 (lower is better)
Translates to: ETMSQMRGWVWQ*QNMTPFTVILC
Trigger: ACACAAAATCACAGTGAATGGAGTCATATTTTGTCATTGCCACACCCACCCTCTCATTTGAGACATGGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp AGTACTGTAAGTTGGTATCCATGGTCTTTTAGACCTTaGAGTACCCTGGTCCAGACTCTTCTGCCTTTTACA +
Preference number: 3 (lower is better)
Translates to: STVSWYPWSFRP*STLVQTLLPFT
Trigger: TGTAAAAGGCAGAAGAGTCTGGACCAGGGTACTTCAAGGTCTAAAAGACCATGGATACCAACTTACAGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp CTTTTGGTATCCTCTCTAGGACCAGTTTGGTGGGCATaGATTCTTTTGGCGTGTTTATACCACAGAGCATTT +
Preference number: 3 (lower is better)
Translates to: LLVSSLGPVWWA*ILLACLYHRAF
Trigger: AAATGCTCTGTGGTATAAACACGCCAAAAGAATTCATGCCCACCAAACTGGTCCTAGAGAGGATACCAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 72 bp CATTTTCCTCTTTCCTTCAACTATGGCAGGAAGTTATaGTGGGTACAGTACTGTAAGTTGGTATCCATGGTC +
Preference number: 3 (lower is better)
Translates to: HFPLSFNYGRKL*WVQYCKLVSMV
Trigger: GACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATAGTTGAAGGAAAGAGGAAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCACCTCATCTGGCTTTTaGTTCTTGTTTCTCAAGCAG +
Preference number: 3 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSTSSGF*FLFLKQ
Trigger: CTGCTTGAGAAACAAGAACAAAAAGCCAGATGAGGT...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTAGCCAGTGGAGTCACTaGTTATACACTGTGCATAAC +
Preference number: 3 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLSQWSH*LYTVHN
Trigger: GTTATGCACAGTGTATAACAAGTGACTCCACTGGCT...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp TGTATTAAACAGCATATGCATGAAAGGGTGGATTGCTaGAGGCATCATAAAGTACATAGCACCACTAGGGAC +
Preference number: 3 (lower is better)
Translates to: CIKQHMHERVDC*RHHKVHSTTRD
Trigger: GTCCCTAGTGGTGCTATGTACTTTATGATGCCTTCAGCAATCCACCCTTTCATGCATATGCTGTTTAATACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp AGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATaGTGGTTCCAGTTCAACTTGAATTCTATTCCTTTG +
Preference number: 3 (lower is better)
Translates to: STPLQDWISLVP*WFQFNLNSIPL
Trigger: CAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR TCA 72 bp GTGAAATTAACCAGACCCAAAGTTTATCCATCTCAATaGAAGCTGTGGAGCTTCACACTGGATTCCACTTTC +
Preference number: 3 (lower is better)
Translates to: VKLTRPKVYPSQ*KLWSFTLDSTF
Trigger: GAAAGTGGAATCCAGTGTGAAGCTCCACAGCTTTCATTGAGATGGATAAACTTTGGGTCTGGTTAATTTCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp TTTCCTCTTTCCTTCAACTATGGCAGGAAGTTATGCTaGGTACAGTACTGTAAGTTGGTATCCATGGTCTTT +
Preference number: 3 (lower is better)
Translates to: FPLSFNYGRKLC*VQYCKLVSMVF
Trigger: AAAGACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATAGTTGAAGGAAAGAGGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTCAATTACAGCTTCACTaGTCTTCCTTGTCCTTTTTC +
Preference number: 3 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLQLQLH*SSLSFF
Trigger: GAAAAAGGACAAGGAAGACAAGTGAAGCTGTAATTG...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTACTGCTTCCTTCCTCTTaGCACTTGCTTGGGATACTT +
Preference number: 3 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLLLPSS*HLLGIL
Trigger: AAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAG...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAGAATCTGCCAATGGCTaGTCAAAGAACCAGCTCTTA +
Preference number: 3 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRESANG*SKNQLL
Trigger: TAAGAGCTGGTTCTTTGACAAGCCATTGGCAGATTC...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR GCA 72 bp CTCCTGGCCAATATGATCTATTTTGGGTATTTGGCCTaGTGTGTAGAATGTATATTCTTTAGTGTTTGGGTC +
Preference number: 3 (lower is better)
Translates to: LLANMIYFGYLA*CVECIFFSVWV
Trigger: GACCCAAACACTAAAGAATATACATTCTACACAGCAGGCCAAATACCCAAAATAGATCATATTGGCCAGGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp TGGACATGTGTATTAAACAGCATATGCATGAAAGGGTaGATTGCTGAAGGCATCATAAAGTACATAGCACCA +
Preference number: 3 (lower is better)
Translates to: WTCVLNSICMKG*IAEGIIKYIAP
Trigger: TGGTGCTATGTACTTTATGATGCCTTCAGCAATCCACCCTTTCATGCATATGCTGTTTAATACACATGTCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp TATGGACTACCACCTCCTGGCCAATATGATCTATTTTaGGTATTTGGCCTGCTGTGTAGAATGTATATTCTT +
Preference number: 3 (lower is better)
Translates to: YGLPPPGQYDLF*VFGLLCRMYIL
Trigger: AAGAATATACATTCTACACAGCAGGCCAAATACCCAAAATAGATCATATTGGCCAGGAGGTGGTAGTCCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp TTGATTTTGGTTAGCTGGATAGCTAGAATCTGCCAATaGCTTGTCAAAGAACCAGCTCTTAGATTCATTGAT +
Preference number: 3 (lower is better)
Translates to: LILVSWIARICQ*LVKEPALRFID
Trigger: ATCAATGAATCTAAGAGCTGGTTCTTTGACAAGCCATTGGCAGATTCTAGCTATCCAGCTAACCAAAATCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp TTTATCCATCTCAATGAAAGCTGTGGAGCTTCACACTaGATTCCACTTTCACCATCAAATATTGTTTTATGC +
Preference number: 3 (lower is better)
Translates to: FIHLNESCGASH*IPLSPSNIVLC
Trigger: GCATAAAACAATATTTGATGGTGAAAGTGGAATCCAGTGTGAAGCTCCACAGCTTTCATTGAGATGGATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTAGTGAGCACAGTCCTCTaGTATAGAATTCTCAGAAAA +
Preference number: 3 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLVSTVL*YRILRK
Trigger: TTTTCTGAGAATTCTATACAAGAGGACTGTGCTCAC...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR-3UTR CAA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCATCAGAGATATTGTTGTaGTTGCCTACATGGTTTTTG +
Preference number: 3 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSSEILL*LPTWFL
Trigger: CAAAAACCATGTAGGCAACAACAACAATATCTCTGA...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CCA 72 bp CTAGAGCTTGGTGCATACAGAACTGTAATGTATTCATaGTCAATTGTTCTCTTGATTAAAACAAAGACTCCT +
Preference number: 3 (lower is better)
Translates to: LELGAYRTVMYS*SIVLLIKTKTP
Trigger: AGGAGTCTTTGTTTTAATCAAGAGAACAATTGACCATGAATACATTACAGTTCTGTATGCACCAAGCTCTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGGCCTGCCTTAGCCTCTaGGCTGCCTCCCGAGGGGGT +
Preference number: 4 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLACLSL*AASRGG
Trigger: ACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCAGGC...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACATGGAGCCGCAACATCTaGGCAGCTGCAGAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: ELETSLVYTVGSKTARATWSRNI*AAAEVG
Trigger: CCCCACCTCTGCAGCTGCCCAGATGTTGCGGCTCCA...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGGCCTGCCTTAGCCTCTaGGCTGCCTCCCGAGGGGGT +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRACLSL*AASRGG
Trigger: ACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCAGGC...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGTGGAGGAGTCTTTCATaGCTGTTTGGGGTAGTGCCT +
Preference number: 4 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLWRSLS*LFGVVP
Trigger: AGGCACTACCCCAAACAGCCATGAAAGACTCCTCCA...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGTCTGCACGGCTGCCTTaGCAAAGACCTTCTTCTCAA +
Preference number: 4 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLSARLP*QRPSSQ
Trigger: TTGAGAAGAAGGTCTTTGCCAAGGCAGCCGTGCAGA...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACAATCTCGGCATGGCCCTaGGTCAGCTGTGTGATCAGC +
Preference number: 4 (lower is better)
Translates to: ELETSLVYTVGSKTARATISAWP*VSCVIS
Trigger: GCTGATCACACAGCTGACCCAGGGCCATGCCGAGAT...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGTGCCTCCCGAGGGGGTaGCAGGGGACGGTCACTATC +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRCLPRG*QGTVTI
Trigger: GATAGTGACCGTCCCCTGCCACCCCCTCGGGAGGCA...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGTCTTTCATGGCTGTTTaGGGTAGTGCCTTCAGACCA +
Preference number: 4 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLSFMAV*GSAFRP
Trigger: TGGTCTGAAGGCACTACCCCAAACAGCCATGAAAGA...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGTATTCAGCTCGTAGATaGTCAGGGATTCGAGGCTCA +
Preference number: 4 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLYSARR*SGIRGS
Trigger: TGAGCCTCGAATCCCTGACCATCTACGAGCTGAATA...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGCTCCAGAGTCTTCAGTaGGGCCTTTGGCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVLQSLQ*GLWLQP
Trigger: GGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAG...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGGAGCCGCAACATCTaGGCAGCTGCAGAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: PSYTPLISILKRQRQEDLWSRNI*AAAEVG
Trigger: CCCCACCTCTGCAGCTGCCCAGATGTTGCGGCTCCA...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CAA 72 bp AGCTGCTGCCTTTGTTCACGGGCTCTGTCTTCTGGGTaGAGAGGCTGCCCCTTGTCATCTCTGGGGATGATC +
Preference number: 4 (lower is better)
Translates to: SCCLCSRALSSG*RGCPLSSLGMI
Trigger: GATCATCCCCAGAGATGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAGCCCGTGAACAAAGGCAGCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
CDS-3UTR TCA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGATTCTCCTGAAGTTGTaGGCTCCTCTATCAACTGTG +
Preference number: 4 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLILLKL*APLSTV
Trigger: CACAGTTGATAGAGGAGCTCACAACTTCAGGAGAAT...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGGCCCGGCACTTGTGCTaGACAGGCTCAAACGTCCCT +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWARHLC*TGSNVP
Trigger: AGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGC...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGAGGCGGATCTCGGCATaGCCCTGGGTCAGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRRRISA*PWVSCV
Trigger: CACACAGCTGACCCAGGGCCATGCCGAGATCCGCCT...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp AGGCTGCCCCTTGTCATCTCTGGGGATGATCTTCCCATGGAATGGGCACTTCAGGTCCTTGCTACAGCATaGCTGCTCTTCATCCTGGGG +
Preference number: 4 (lower is better)
Translates to: RLPLVISGDDLPMEWALQVLATA*LLFILG
Trigger: CCCCAGGATGAAGAGCAGCCATGCTGTAGCAAGGAC...CTGAAGTGCCCATTCCATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
CDS-3UTR CCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTTGGAGCCGCAACATCTaGGCAGCTGCAGAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSWSRNI*AAAEVG
Trigger: CCCCACCTCTGCAGCTGCCCAGATGTTGCGGCTCCA...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTCCTGGGTCAGCTGTGTaGTCAGCAGGCGGTAGGCAT +
Preference number: 4 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSPGSAV*SAGGRH
Trigger: ATGCCTACCGCCTGCTGATCACACAGCTGACCCAGG...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCCCTGGGTCAGCTGTGTaGTCAGCAGGCGGTAGGCAT +
Preference number: 4 (lower is better)
Translates to: LILASLLTEFAPEILSPLPGSAV*SAGGRH
Trigger: ATGCCTACCGCCTGCTGATCACACAGCTGACCCAGG...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGTGTGCCTGCTGCCGCTaGAGCTGCTGCCTTTGTTCA +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWCACCR*SCCLCS
Trigger: TGAACAAAGGCAGCAGCTTCAGCGGCAGCAGGCACA...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGTGCCTGCTGCCGCTaGAGCTGCTGCCTTTGTTCA +
Preference number: 4 (lower is better)
Translates to: PSYTPLISILKRQRQEDLCACCR*SCCLCS
Trigger: TGAACAAAGGCAGCAGCTTCAGCGGCAGCAGGCACA...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGCCAGTGCTTCTGTCCTaGTCCTCTGTCCTCTCCCAG +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWPVLLS*SSVLSQ
Trigger: CTGGGAGAGGACAGAGGAGCAGGACAGAAGCACTGG...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCCTCACTGTCCTCCAGTaGTTCTGTCCTGCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: LHASALPAEPPPLSSAEVLTVLQ*FCPAPL
Trigger: CAGAGGAGCAGGACAGAAGCACTGGAGGACAGTGAG...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGCTGCCAATCTGGATGTaGCTGCTGCCGCTGAAGCTG +
Preference number: 4 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMLPIWM*LLPLKL
Trigger: CAGCTTCAGCGGCAGCAGGCACATCCAGATTGGCAG...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCGCAGCAACTACTCTCTaGACGGCTGCCTTGGCAAAG +
Preference number: 4 (lower is better)
Translates to: LHASALPAEPPPLSSAEVAATTL*TAALAK
Trigger: CTTTGCCAAGGCAGCCGTGCAGAGAGTAGTTGCTGC...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCGTCCTTGCTACAGCATaGCTGCTCTTCATCCTGGGG +
Preference number: 4 (lower is better)
Translates to: LHASALPAEPPPLSSAEVVLATA*LLFILG
Trigger: CCCCAGGATGAAGAGCAGCCATGCTGTAGCAAGGAC...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCACGGGCTCTGTCTTCTaGGTTGAGAGGCTGCCCCTT +
Preference number: 4 (lower is better)
Translates to: PSYTPLISILKRQRQEDLTGSVF*VERLPL
Trigger: AAGGGGCAGCCTCTCAACCCAGAAGACAGAGCCCGT...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCTATCTGTGCCCAGTGTaGGCTCGAGGAATTCCTGGA +
Preference number: 4 (lower is better)
Translates to: LHASALPAEPPPLSSAEVYLCPV*ARGIPG
Trigger: TCCAGGAATTCCTCGAGCTCACACTGGGCACAGATA...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTGCCTGCCTTAGCCTCTaGGCTGCCTCCCGAGGGGGT +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLACLSL*AASRGG
Trigger: ACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCAGGC...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGAGGCAACCAGGTCCTTaGTACAGCATGGCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVRQPGP*YSMAAL
Trigger: AAGAGCAGCCATGCTGTAGCAAGGACCTGGTTGCCT...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGCTCACTGTCCTCCAGTaGTTCTGTCCTGCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWLTVLQ*FCPAPL
Trigger: CAGAGGAGCAGGACAGAAGCACTGGAGGACAGTGAG...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGGAAGGGTACAATGGGTaGTCGGGCTCGCTCTGCTTG +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYREGYNG*SGSLCL
Trigger: CAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTC...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGATCTCGGCATGGCCCTaGGTCAGCTGTGTGATCAGC +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRISAWP*VSCVIS
Trigger: GCTGATCACACAGCTGACCCAGGGCCATGCCGAGAT...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACATGGAGGAGTCTTTCATaGCTGTTTGGGGTAGTGCCT +
Preference number: 4 (lower is better)
Translates to: ELETSLVYTVGSKTARATWRSLS*LFGVVP
Trigger: AGGCACTACCCCAAACAGCCATGAAAGACTCCTCCA...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCTCCAGCGTGTACTTGTaGGAACCCAGTCCATGGCTC +
Preference number: 4 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTSSVYL*EPSPWL
Trigger: GAGCCATGGACTGGGTTCCCACAAGTACACGCTGGA...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGCTTCAGTGGGGCCTTTaGCTCCAGCCCATATTCAGC +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWLQWGL*LQPIFS
Trigger: GCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAG...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTACGGGCTCTGTCTTCTaGGTTGAGAGGCTGCCCCTT +
Preference number: 4 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSTGSVF*VERLPL
Trigger: AAGGGGCAGCCTCTCAACCCAGAAGACAGAGCCCGT...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
3UTR CAA 72 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTaGTCCTCTGCTGAGGTCCGTGTGTGTAAGAAGCAG +
Preference number: 4 (lower is better)
Translates to: LHASALPAEPPP*SSAEVRVCKKQ
Trigger: CTGCTTCTTACACACACGGACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp AGGCTGCCCCTTGTCATCTCTGGGGATGATCTTCCCATGGAATGGGCACTTCAGGAGTTGGGATTCTCCTaGAGTTGTGAGCTCCTCTAT +
Preference number: 4 (lower is better)
Translates to: RLPLVISGDDLPMEWALQELGFS*SCELLY
Trigger: ATAGAGGAGCTCACAACTTCAGGAGAATCCCAACTC...CTGAAGTGCCCATTCCATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
CDS-3UTR TCA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGTGTCATCTCTGGGGATaGTCTTCCCATGGAATGGGC +
Preference number: 4 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMCHLWG*SSHGMG
Trigger: GCCCATTCCATGGGAAGATCATCCCCAGAGATGACA...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTCTCACTGTCCTCCAGTaGTTCTGTCCTGCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSLTVLQ*FCPAPL
Trigger: CAGAGGAGCAGGACAGAAGCACTGGAGGACAGTGAG...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGAGAAACTCAGGGTCCTaGCAATCTGGATGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMRNSGS*QSGCAC
Trigger: GCAGGCACATCCAGATTGGCAGGACCCTGAGTTTCT...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCTCCCTTTGCCTTTCTTaGTGGACCTGGATGAACCGA +
Preference number: 4 (lower is better)
Translates to: LHASALPAEPPPLSSAEVSLCLS*WTWMNR
Trigger: TCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGA...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGGTCCTTGCTACAGCATaGCTGCTCTTCATCCTGGGG +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRVLATA*LLFILG
Trigger: CCCCAGGATGAAGAGCAGCCATGCTGTAGCAAGGAC...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCGTTCGTCCTCATCCCTaGAGGAGTCTTTCATGGCTG +
Preference number: 4 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTVRPHP*RSLSWL
Trigger: CAGCCATGAAAGACTCCTCCAGGGATGAGGACGAAC...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAACCAGGAGCACACAGTTaGCAGAAACTTGTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: ARWSACPYPTPMQVRHPEPGAHS*QKLVLD
Trigger: ATCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGG...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACATATTCAGCTCGTAGATaGTCAGGGATTCGAGGCTCA +
Preference number: 4 (lower is better)
Translates to: ELETSLVYTVGSKTARATYSARR*SGIRGS
Trigger: TGAGCCTCGAATCCCTGACCATCTACGAGCTGAATA...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACAATTCTCCTGAAGTTGTaGGCTCCTCTATCAACTGTG +
Preference number: 4 (lower is better)
Translates to: ELETSLVYTVGSKTARATILLKL*APLSTV
Trigger: CACAGTTGATAGAGGAGCTCACAACTTCAGGAGAAT...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAATTGTCTTCATTCTCCTaGACCTTCAGACCATCTGAG +
Preference number: 4 (lower is better)
Translates to: ARWSACPYPTPMQVRHPELSSFS*TFRPSE
Trigger: CTCAGATGGTCTGAAGGTTCAGGAGAATGAAGACAA...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCAGGCAACCAGGTCCTTaGTACAGCATGGCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: LILASLLTEFAPEILSPLRQPGP*YSMAAL
Trigger: AAGAGCAGCCATGCTGTAGCAAGGACCTGGTTGCCT...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTGAAGGGTACAATGGGTaGTCGGGCTCGCTCTGCTTG +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFEGYNG*SGSLCL
Trigger: CAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTC...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAATCTTCTTTTTCCCTTTaGCTTTCTTGCTGGACCTGG +
Preference number: 4 (lower is better)
Translates to: ARWSACPYPTPMQVRHPESSFSL*LSCWTW
Trigger: CCAGGTCCAGCAAGAAAGGCAAAGGGAAAAAGAAGA...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATAGGCGGATCTCGGCATaGCCCTGGGTCAGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNRRISA*PWVSCV
Trigger: CACACAGCTGACCCAGGGCCATGCCGAGATCCGCCT...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCTGGAGGAGTCTTTCATaGCTGTTTGGGGTAGTGCCT +
Preference number: 4 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTWRSLS*LFGVVP
Trigger: AGGCACTACCCCAAACAGCCATGAAAGACTCCTCCA...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGGTTCGTCCTCATCCCTaGAGGAGTCTTTCATGGCTG +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRVRPHP*RSLSWL
Trigger: CAGCCATGAAAGACTCCTCCAGGGATGAGGACGAAC...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAAGTAATGTGTCGGCTATaGAGCATCTCAGAAACATGG +
Preference number: 4 (lower is better)
Translates to: ARWSACPYPTPMQVRHPEVMCRL*SISETW
Trigger: CCATGTTTCTGAGATGCTCCATAGCCGACACATTAC...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGGGGATGATCTTCCCATaGAATGGGCACTTCAGTCGA +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWGMIFP*NGHFSR
Trigger: TCGACTGAAGTGCCCATTCCATGGGAAGATCATCCC...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCCTTTGCCTTTCTTGCTaGACCTGGATGAACCGAGGT +
Preference number: 4 (lower is better)
Translates to: PSYTPLISILKRQRQEDLLCLSC*TWMNRG
Trigger: ACCTCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAG...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAATTCTTCTGGTCCATCTaGTTCATGGCAGCAACTACT +
Preference number: 4 (lower is better)
Translates to: ARWSACPYPTPMQVRHPEFFWSI*FMAATT
Trigger: AGTAGTTGCTGCCATGAACCAGATGGACCAGAAGAA...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
3UTR CAA 72 bp AGATCCGTGAGGTTAGGGTGCTTCTTCTTTTTCCCTTaGCCTTTCTTGCTGGACCTGGATGAACCGAGGTCC +
Preference number: 4 (lower is better)
Translates to: RSVRLGCFFFFP*PFLLDLDEPRS
Trigger: GGACCTCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGAAAAAGAAGAAGCACCCTAACCTCACGGATCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
CDS-3UTR TCA 90 bp AACCATATCCCCTGGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACCCTGGGTCAGCTGTGTaGTCAGCAGGCGGTAGGCAT +
Preference number: 4 (lower is better)
Translates to: NHIPWPPGEYFNASLHCYPGSAV*SAGGRH
Trigger: ATGCCTACCGCCTGCTGATCACACAGCTGACCCAGG...GTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTCTCTGTCTTCTGGGTTaGGAGGCTGCCCCTTGTCAT +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFLCLLG*EAAPCH
Trigger: ATGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAG...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTCAACCTTCCACAGCTTaGATGGCTGCCTGCCTTAGC +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFQPSTA*MAACLS
Trigger: GCTAAGGCAGGCAGCCATGCAAGCTGTGGAAGGTTG...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTGCTCGGGCTCGCTCTaGTTGCTTCTGGGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSCSGSL*LLLGFL
Trigger: GAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TATGGCAGGAAGTTATGCTGGGTACAGTACTGTAAGTTGGTATCCATGGTCTTTGCCCGGCACTTGTGCTaGACAGGCTCAAACGTCCCT +
Preference number: 4 (lower is better)
Translates to: YGRKLCWVQYCKLVSMVFARHLC*TGSNVP
Trigger: AGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGC...AAAGACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCAGGGCCCGGCACTTGTaGTGCACAGGCTCAAACGTC +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSRARHL*CTGSNV
Trigger: GACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCT...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTAGGGCCCGGCACTTGTaGTGCACAGGCTCAAACGTC +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLRARHL*CTGSNV
Trigger: GACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCT...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GAACCGAGGTCCACCCCTGTGGCTGCTTCCACGTCCTTCAGAAACTCAGGGTCCAAAGAATTTATCCTCTaGGCATGGTACAAAATCCAA +
Preference number: 4 (lower is better)
Translates to: EPRSTPVAASTSFRNSGSKEFIL*AWYKIQ
Trigger: TTGGATTTTGTACCATGCCCAGAGGATAAATTCTTT...GGACCCTGAGTTTCTGAAGGACGTGGAAGCAGCCACAGGGGTGGACCTCGGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
CDS-3UTR CCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCCCAGGAGCACACAGTTaGCAGAAACTTGTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: PSYTPLISILKRQRQEDLPGAHS*QKLVLD
Trigger: ATCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGG...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGCCAGGAGCACACAGTTaGCAGAAACTTGTTCTGGAT +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWPGAHS*QKLVLD
Trigger: ATCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGG...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCATAACCCTCTTTCTCTaGGACCTCCACAAAGTCCTG +
Preference number: 4 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTITLFL*DLHKVL
Trigger: CAGGACTTTGTGGAGGTCCCAGAGAAAGAGGGTTAT...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp AACCATATCCCCTGGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACCTCCAGAGTCTTCAGTaGGGCCTTTGGCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: NHIPWPPGEYFNASLHCYLQSLQ*GLWLQP
Trigger: GGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAG...GTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCCGAGGTCCACCCCTGTaGCTGCTTCCACGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSRGPPL*LLPRPS
Trigger: TGAAGGACGTGGAAGCAGCCACAGGGGTGGACCTCG...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGTCTGCACGGCTGCCTTaGCAAAGACCTTCTTCTCAA +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRSARLP*QRPSSQ
Trigger: TTGAGAAGAAGGTCTTTGCCAAGGCAGCCGTGCAGA...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGTTCTTCTGGTCCATCTaGTTCATGGCAGCAACTACT +
Preference number: 4 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVFFWSI*FMAATT
Trigger: AGTAGTTGCTGCCATGAACCAGATGGACCAGAAGAA...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGATTCTCCTGAAGTTGTaGGCTCCTCTATCAACTGTG +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWILLKL*APLSTV
Trigger: CACAGTTGATAGAGGAGCTCACAACTTCAGGAGAAT...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp GTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGGCAATGTTGTCTTCATTCTCCTaGACCTTCAGACCATCTGAG +
Preference number: 4 (lower is better)
Translates to: VRVPKRDHVSNERVGVAMLSSFS*TFRPSE
Trigger: CTCAGATGGTCTGAAGGTTCAGGAGAATGAAGACAA...CATTGCCACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTTGTCATCTCTGGGGATaGTCTTCCCATGGAATGGGC +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFCHLWG*SSHGMG
Trigger: GCCCATTCCATGGGAAGATCATCCCCAGAGATGACA...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCCCAGTGCTTCTGTCCTaGTCCTCTGTCCTCTCCCAG +
Preference number: 4 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSPVLLS*SSVLSQ
Trigger: CTGGGAGAGGACAGAGGAGCAGGACAGAAGCACTGG...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp AACCATATCCCCTGGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACGAAGGGTACAATGGGTaGTCGGGCTCGCTCTGCTTG +
Preference number: 4 (lower is better)
Translates to: NHIPWPPGEYFNASLHCYEGYNG*SGSLCL
Trigger: CAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTC...GTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp AACCATATCCCCTGGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACTCTGGGTTGAGAGGCTaGCCCTTGTCATCTCTGGGG +
Preference number: 4 (lower is better)
Translates to: NHIPWPPGEYFNASLHCYSGLRG*PLSSLG
Trigger: CCCCAGAGATGACAAGGGGCAGCCTCTCAACCCAGA...GTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTCTTCTTTTTCCCTTTaGCTTTCTTGCTGGACCTGG +
Preference number: 4 (lower is better)
Translates to: PSYTPLISILKRQRQEDLSSFSL*LSCWTW
Trigger: CCAGGTCCAGCAAGAAAGGCAAAGGGAAAAAGAAGA...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp AACCATATCCCCTGGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACATCTCGGCATGGCCCTaGGTCAGCTGTGTGATCAGC +
Preference number: 4 (lower is better)
Translates to: NHIPWPPGEYFNASLHCYISAWP*VSCVIS
Trigger: GCTGATCACACAGCTGACCCAGGGCCATGCCGAGAT...GTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATGCCTCCCGAGGGGGTaGCAGGGGACGGTCACTATC +
Preference number: 4 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRCLPRG*QGTVTI
Trigger: GATAGTGACCGTCCCCTGCCACCCCCTCGGGAGGCA...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTCTCCAGAGTCTTCAGTaGGGCCTTTGGCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLLQSLQ*GLWLQP
Trigger: GGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAG...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCCTTCTCTTCTCATCCTaGTCCTCTCCTGTAACTTAC +
Preference number: 4 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTLLFSS*SSPVTY
Trigger: GTAAGTTACAGGAGAGGACCAGGATGAGAAGAGAAG...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CACCATTTGGAAGGAAGAAGCAGGCAGATCTTTGTGAGTTCAAGGCCCACCTGGCTTCTCTTCTCATCCTaGTCCTCTCCTGTAACTTAC +
Preference number: 4 (lower is better)
Translates to: HHLEGRSRQIFVSSRPTWLLFSS*SSPVTY
Trigger: GTAAGTTACAGGAGAGGACCAGGATGAGAAGAGAAG...CCAGGTGGGCCTTGAACTCACAAAGATCTGCCTGCTTCTTCCTTCCAAATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTCTTCTGGGCTTCCTCTaGCCCAGGAAGTACCCTGGT +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLLLGFL*PRKYPG
Trigger: ACCAGGGTACTTCCTGGGCCAGAGGAAGCCCAGAAG...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CAA 72 bp CCTGGTTCTGGTTTAAGGTGTGTGCTGGCTCCTGGTTaGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCA +
Preference number: 4 (lower is better)
Translates to: PGSGLRCVLAPG*LFAFILFCASA
Trigger: TGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAGCCAGCACACACCTTAAACCAGAACCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCTCATTTTCTGAGCATTaGGTTGGGATTCTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTSFSEH*VGILLK
Trigger: CTTCAGGAGAATCCCAACTCAATGCTCAGAAAATGA...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTCTCTGTCTTCTGGGTTaGGAGGCTGCCCCTTGTCAT +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLLCLLG*EAAPCH
Trigger: ATGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAG...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCCAACCTTCCACAGCTTaGATGGCTGCCTGCCTTAGC +
Preference number: 4 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSQPSTA*MAACLS
Trigger: GCTAAGGCAGGCAGCCATGCAAGCTGTGGAAGGTTG...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTCCAGTGCTTCTGTCCTaGTCCTCTGTCCTCTCCCAG +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLPVLLS*SSVLSQ
Trigger: CTGGGAGAGGACAGAGGAGCAGGACAGAAGCACTGG...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTTCTGGGTTGAGAGGCTaGCCCTTGTCATCTCTGGGG +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLSGLRG*PLSSLG
Trigger: CCCCAGAGATGACAAGGGGCAGCCTCTCAACCCAGA...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTCTGCCAATCTGGATGTaGCTGCTGCCGCTGAAGCTG +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLLPIWM*LLPLKL
Trigger: CAGCTTCAGCGGCAGCAGGCACATCCAGATTGGCAG...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TATGGCAGGAAGTTATGCTGGGTACAGTACTGTAAGTTGGTATCCATGGTCTTTGCAGCAACTACTCTCTaGACGGCTGCCTTGGCAAAG +
Preference number: 4 (lower is better)
Translates to: YGRKLCWVQYCKLVSMVFAATTL*TAALAK
Trigger: CTTTGCCAAGGCAGCCGTGCAGAGAGTAGTTGCTGC...AAAGACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TGTTTACCTATGTGTGGGCAGATGTCTATGGGCATATGTGAATTTTCATATTATTGCCTCCCGAGGGGGTaGCAGGGGACGGTCACTATC +
Preference number: 4 (lower is better)
Translates to: CLPMCGQMSMGICEFSYYCLPRG*QGTVTI
Trigger: GATAGTGACCGTCCCCTGCCACCCCCTCGGGAGGCA...ATAATATGAAAATTCACATATGCCCATAGACATCTGCCCACACATAGGTAAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTCTGCACTTTCTCTGTaGATTTTATCCAGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: PSYTPLISILKRQRQEDLSALSL*ILSRCF
Trigger: GAAGCACCTGGATAAAATCCACAGAGAAAGTGCAGA...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTTCCAGCGTGTACTTGTaGGAACCCAGTCCATGGCTC +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLSSVYL*EPSPWL
Trigger: GAGCCATGGACTGGGTTCCCACAAGTACACGCTGGA...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TATGGCAGGAAGTTATGCTGGGTACAGTACTGTAAGTTGGTATCCATGGTCTTTCTTCAGTGGGGCCTTTaGCTCCAGCCCATATTCAGC +
Preference number: 4 (lower is better)
Translates to: YGRKLCWVQYCKLVSMVFLQWGL*LQPIFS
Trigger: GCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAG...AAAGACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTGGTCCATCTGGTTCATaGCAGCAACTACTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFGPSGS*QQLLSA
Trigger: TGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACC...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTGAGTTGGGATTCTCCTaGAGTTGTGAGCTCCTCTAT +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFELGFS*SCELLY
Trigger: ATAGAGGAGCTCACAACTTCAGGAGAATCCCAACTC...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGTCATTTTCTGAGCATTaGGTTGGGATTCTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRSFSEH*VGILLK
Trigger: CTTCAGGAGAATCCCAACTCAATGCTCAGAAAATGA...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATAGGCAACCAGGTCCTTaGTACAGCATGGCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNRQPGP*YSMAAL
Trigger: AAGAGCAGCCATGCTGTAGCAAGGACCTGGTTGCCT...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCAGAAACTCAGGGTCCTaGCAATCTGGATGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSRNSGS*QSGCAC
Trigger: GCAGGCACATCCAGATTGGCAGGACCCTGAGTTTCT...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAAAAAGAATTTATCCTCTaGGCATGGTACAAAATCCAA +
Preference number: 4 (lower is better)
Translates to: ARWSACPYPTPMQVRHPEKEFIL*AWYKIQ
Trigger: TTGGATTTTGTACCATGCCCAGAGGATAAATTCTTT...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp AACCATATCCCCTGGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACGTTCGTCCTCATCCCTaGAGGAGTCTTTCATGGCTG +
Preference number: 4 (lower is better)
Translates to: NHIPWPPGEYFNASLHCYVRPHP*RSLSWL
Trigger: CAGCCATGAAAGACTCCTCCAGGGATGAGGACGAAC...GTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TGTTTACCTATGTGTGGGCAGATGTCTATGGGCATATGTGAATTTTCATATTATTGCTCGGGCTCGCTCTaGTTGCTTCTGGGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: CLPMCGQMSMGICEFSYYCSGSL*LLLGFL
Trigger: GAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCA...ATAATATGAAAATTCACATATGCCCATAGACATCTGCCCACACATAGGTAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATTCCCTTTGCCTTTCTTaGTGGACCTGGATGAACCGA +
Preference number: 4 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNSLCLS*WTWMNR
Trigger: TCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGA...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTTCCGTGAGGTTAGGGTaGTTCTTCTTTTTCCCTTTG +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFSVRLG*FFFFPL
Trigger: CAAAGGGAAAAAGAAGAAGCACCCTAACCTCACGGA...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTGATTTTGGCTAGTCTCCTTACTGAGTTTGCCCCAGAGATCCTGTCTCCTCTCCCATTTTCAGGTCAATaGCCTGTTTTAAATGTGCAC +
Preference number: 4 (lower is better)
Translates to: LILASLLTEFAPEILSPLPFSGQ*PVLNVH
Trigger: GTGCACATTTAAAACAGGCCATTGACCTGAAAATGG...GAGAGGAGACAGGATCTCTGGGGCAAACTCAGTAAGGAGACTAGCCAAAATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTCCATTTTCAGGTCAATaGCCTGTTTTAAATGTGCAC +
Preference number: 4 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSPFSGQ*PVLNVH
Trigger: GTGCACATTTAAAACAGGCCATTGACCTGAAAATGG...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCAGCATCTCAGAAACATaGGCACTGTCCACCTCTTCC +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSSISET*ALSTSS
Trigger: GGAAGAGGTGGACAGTGCCCATGTTTCTGAGATGCT...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTACGAGGTCCACCCCTGTaGCTGCTTCCACGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLRGPPL*LLPRPS
Trigger: TGAAGGACGTGGAAGCAGCCACAGGGGTGGACCTCG...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTTTCCAGAAGCGGTGTTaGGAGTCAGATTTAAGAATC +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFFQKRC*ESDLRI
Trigger: GATTCTTAAATCTGACTCTCAACACCGCTTCTGGAA...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp AACCATATCCCCTGGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACAGATCCTACATGGTATaGAGAGGCAACCAGGTCCTT +
Preference number: 4 (lower is better)
Translates to: NHIPWPPGEYFNASLHCYRSYMV*RGNQVL
Trigger: AAGGACCTGGTTGCCTCTGCATACCATGTAGGATCT...GTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTCTTTCATGGCTGTTTaGGGTAGTGCCTTCAGACCA +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSSFMAV*GSAFRP
Trigger: TGGTCTGAAGGCACTACCCCAAACAGCCATGAAAGA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGATCCAGCGTGTACTTGTaGGAACCCAGTCCATGGCTC +
Preference number: 4 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRSSVYL*EPSPWL
Trigger: GAGCCATGGACTGGGTTCCCACAAGTACACGCTGGA...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTGGCAGAAACTTGTTCTaGATGAGTTTGAGCGAGTCC +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLGRNLF*MSLSES
Trigger: GGACTCGCTCAAACTCATCCAGAACAAGTTTCTGCC...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCGGCAGAAACTTGTTCTaGATGAGTTTGAGCGAGTCC +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSGRNLF*MSLSES
Trigger: GGACTCGCTCAAACTCATCCAGAACAAGTTTCTGCC...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTATAACCCTCTTTCTCTaGGACCTCCACAAAGTCCTG +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLITLFL*DLHKVL
Trigger: CAGGACTTTGTGGAGGTCCCAGAGAAAGAGGGTTAT...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TGTTTACCTATGTGTGGGCAGATGTCTATGGGCATATGTGAATTTTCATATTATCTTCTGGGCTTCCTCTaGCCCAGGAAGTACCCTGGT +
Preference number: 4 (lower is better)
Translates to: CLPMCGQMSMGICEFSYYLLGFL*PRKYPG
Trigger: ACCAGGGTACTTCCTGGGCCAGAGGAAGCCCAGAAG...ATAATATGAAAATTCACATATGCCCATAGACATCTGCCCACACATAGGTAAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTAGCATCTCAGAAACATaGGCACTGTCCACCTCTTCC +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLSISET*ALSTSS
Trigger: GGAAGAGGTGGACAGTGCCCATGTTTCTGAGATGCT...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTCTTTGCCTTTCTTGCTaGACCTGGATGAACCGAGGT +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLLCLSC*TWMNRG
Trigger: ACCTCGGTTCATCCAGGTCCAGCAAGAAAGGCAAAG...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTAGATCCTACATGGTATaGAGAGGCAACCAGGTCCTT +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLRSYMV*RGNQVL
Trigger: AAGGACCTGGTTGCCTCTGCATACCATGTAGGATCT...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCTCCGTGAGGTTAGGGTaGTTCTTCTTTTTCCCTTTG +
Preference number: 4 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSSVRLG*FFFFPL
Trigger: CAAAGGGAAAAAGAAGAAGCACCCTAACCTCACGGA...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp AAGGTAGTGAGTGACACCTGCTTCCTTCCTCTTTGCACTTGCTTGGGATACTTTCCATTTTCAGGTCAATaGCCTGTTTTAAATGTGCAC +
Preference number: 4 (lower is better)
Translates to: KVVSDTCFLPLCTCLGYFPFSGQ*PVLNVH
Trigger: GTGCACATTTAAAACAGGCCATTGACCTGAAAATGG...AAAGTATCCCAAGCAAGTGCAAAGAGGAAGGAAGCAGGTGTCACTCACTACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTTATTCAGCTCGTAGATaGTCAGGGATTCGAGGCTCA +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLYSARR*SGIRGS
Trigger: TGAGCCTCGAATCCCTGACCATCTACGAGCTGAATA...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTACTTCAGTGGGGCCTTTaGCTCCAGCCCATATTCAGC +
Preference number: 4 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLLQWGL*LQPIFS
Trigger: GCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAG...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCCTTCTCTTCTCATCCTaGTCCTCTCCTGTAACTTAC +
Preference number: 4 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSLLFSS*SSPVTY
Trigger: GTAAGTTACAGGAGAGGACCAGGATGAGAAGAGAAG...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTTCTCGTGTTTCTTCTaGTCCATCTGGTTCATGGCA +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSFSCFF*SIWFMA
Trigger: TGCCATGAACCAGATGGACCAGAAGAAACACGAGAA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTTTCTCGTGTTTCTTCTaGTCCATCTGGTTCATGGCA +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLFSCFF*SIWFMA
Trigger: TGCCATGAACCAGATGGACCAGAAGAAACACGAGAA...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
3UTR CAA 72 bp TTTCTTGACTGGGGAGCTAAGGATATTATTAAAACCTaGTTCTGGTTAAAGGTGTGTGCTGGCTCCTGGTTC +
Preference number: 4 (lower is better)
Translates to: FLDWGAKDIIKT*FWLKVCAGSWF
Trigger: GAACCAGGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCCCCAGTCAAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTATATCTGTGCCCAGTGTaGGCTCGAGGAATTCCTGGA +
Preference number: 4 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLYLCPV*ARGIPG
Trigger: TCCAGGAATTCCTCGAGCTCACACTGGGCACAGATA...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR TCA 90 bp CTCCTGGTTTGCTCTTTGCATTCATCCTCTTTTGTGCTTCAGCAATTACAGCTTTTCCAGAAGCGGTGTTaGGAGTCAGATTTAAGAATC +
Preference number: 4 (lower is better)
Translates to: LLVCSLHSSSFVLQQLQLFQKRC*ESDLRI
Trigger: GATTCTTAAATCTGACTCTCAACACCGCTTCTGGAA...AAGCTGTAATTGCTGAAGCACAAAAGAGGATGAATGCAAAGAGCAAACCAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGCTCCTCGGAAGACTTaGAAATTTTCTTCAGTTCCT +
Preference number: 4 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNAPRKT*KFSSVP
Trigger: AGGAACTGAAGAAAATTTGCAAGTCTTCCGAGGAGC...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCGCTCCTCGGAAGACTTaGAAATTTTCTTCAGTTCCT +
Preference number: 4 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSAPRKT*KFSSVP
Trigger: AGGAACTGAAGAAAATTTGCAAGTCTTCCGAGGAGC...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTCTGCACTTTCTCTGTaGATTTTATCCAGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSSALSL*ILSRCF
Trigger: GAAGCACCTGGATAAAATCCACAGAGAAAGTGCAGA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp GGAGCTAAGGATATTATTAAAACCTTGTTCTGGTTAAAGGTGTGTGCTGGCTCCTCTGCACTTTCTCTGTaGATTTTATCCAGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: GAKDIIKTLFWLKVCAGSSALSL*ILSRCF
Trigger: GAAGCACCTGGATAAAATCCACAGAGAAAGTGCAGA...GGAGCCAGCACACACCTTTAACCAGAACAAGGTTTTAATAATATCCTTAGCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAGGGATGATCTTCCCATaGAATGGGCACTTCAGTCGA +
Preference number: 4 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRGMIFP*NGHFSR
Trigger: TCGACTGAAGTGCCCATTCCATGGGAAGATCATCCC...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
3UTR CAA 72 bp CACACCCACACCCTTTTACTTCAGCGCATAATTAAATaGGTTTGCAAACTTCTCGTGTTTCTTCTGGTCCAT +
Preference number: 4 (lower is better)
Translates to: HTHTLLLQRIIK*VCKLLVFLLVH
Trigger: ATGGACCAGAAGAAACACGAGAAGTTTGCAAACCAATTTAATTATGCGCTGAAGTAAAAGGGTGTGGGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202046.4
CDS-3UTR TCA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTTCATTTTCTGAGCATTaGGTTGGGATTCTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLSFSEH*VGILLK
Trigger: CTTCAGGAGAATCCCAACTCAATGCTCAGAAAATGA...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGGCAGAAACTTGTTCTaGATGAGTTTGAGCGAGTCC +
Preference number: 4 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSGRNLF*MSLSES
Trigger: GGACTCGCTCAAACTCATCCAGAACAAGTTTCTGCC...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp TGTTTACCTATGTGTGGGCAGATGTCTATGGGCATATGTGAATTTTCATATTATAGATCCTACATGGTATaGAGAGGCAACCAGGTCCTT +
Preference number: 4 (lower is better)
Translates to: CLPMCGQMSMGICEFSYYRSYMV*RGNQVL
Trigger: AAGGACCTGGTTGCCTCTGCATACCATGTAGGATCT...ATAATATGAAAATTCACATATGCCCATAGACATCTGCCCACACATAGGTAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTATCTTTCATGGCTGTTTaGGGTAGTGCCTTCAGACCA +
Preference number: 4 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLSFMAV*GSAFRP
Trigger: TGGTCTGAAGGCACTACCCCAAACAGCCATGAAAGA...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAGTAATGTGTCGGCTATaGAGCATCTCAGAAACATGG +
Preference number: 4 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRVMCRL*SISETW
Trigger: CCATGTTTCTGAGATGCTCCATAGCCGACACATTAC...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR GCA 90 bp CTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGAGCTCCTCGGAAGACTTaGAAATTTTCTTCAGTTCCT +
Preference number: 4 (lower is better)
Translates to: LYSACSVLLDFCIYVHQRAPRKT*KFSSVP
Trigger: AGGAACTGAAGAAAATTTGCAAGTCTTCCGAGGAGC...TCTCTGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
3UTR CAA 72 bp TGTGTCTTTAAGTTCAGTGGCATGTTTCTTATGAAATaGGGTGTTCTAGAGCTTGGTGCATACAGAACTGTA +
Preference number: 4 (lower is better)
Translates to: CVFKFSGMFLMK*GVLELGAYRTV
Trigger: TACAGTTCTGTATGCACCAAGCTCTAGAACACCCAATTTCATAAGAAACATGCCACTGAACTTAAAGACACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS TCA 90 bp GGAAGGCCGAGAGGCGGATCTCGGCATGGCCCTGGGTCAGCTGTGTaGTCAGCAGGCGGTAGGCATGGCTCAGCTGCTCCTCGGAAGACT +
Preference number: 5 (lower is better)
Translates to: GRPRGGSRHGPGSAV*SAGGRHGSAAPRKT
Trigger: AGTCTTCCGAGGAGCAGCTGAGCCATGCCTACCGCCTGCTGATCACACAGCTGACCCAGGGCCATGCCGAGATCCGCCTCTCGGCCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 90 bp GCTGCTCCTGGCCCCAGTAACACAGGTCCACTCCGAAGGGTACAATaGGTGCTCGGGCTCGCTCTGCTTGCTTCTGGGCTTCCTCTGGCC +
Preference number: 5 (lower is better)
Translates to: AAPGPSNTGPLRRVQ*VLGLALLASGLPLA
Trigger: GGCCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTCGGAGTGGACCTGTGTTACTGGGGCCAGGAGCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS GCA 90 bp AGGTCCACTCCGAAGGGTACAATGGGTGCTCGGGCTCGCTCTGCTTaGTTCTGGGCTTCCTCTGGCCCAGGAAGTACCCTGGTAGAGGAG +
Preference number: 5 (lower is better)
Translates to: RSTPKGTMGARARSA*FWASSGPGSTLVEE
Trigger: CTCCTCTACCAGGGTACTTCCTGGGCCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTCGGAGTGGACCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 90 bp GGAAGTACCCTGGTAGAGGAGGGAGAGGGAGATGATAAGCAGTCCTaGAGCCGCAACATCTGGGCAGCTGCAGAGGTGGGGTCTGAGGCC +
Preference number: 5 (lower is better)
Translates to: GSTLVEEGEGDDKQS*SRNIWAAAEVGSEA
Trigger: GGCCTCAGACCCCACCTCTGCAGCTGCCCAGATGTTGCGGCTCCAGGACTGCTTATCATCTCCCTCTCCCTCCTCTACCAGGGTACTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS GCA 90 bp ACACAGGTCCACTCCGAAGGGTACAATGGGTGCTCGGGCTCGCTCTaGTTGCTTCTGGGCTTCCTCTGGCCCAGGAAGTACCCTGGTAGA +
Preference number: 5 (lower is better)
Translates to: TQVHSEGYNGCSGSL*LLLGFLWPRKYPGR
Trigger: TCTACCAGGGTACTTCCTGGGCCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTCGGAGTGGACCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS GCA 90 bp CGCTCGCAGAGCCTGCCATTAGGCCTCAGGGCCCGGCACTTGTGCTaGACAGGCTCAAACGTCCCTGAAAAGGTAATGTGTCGGCTATGG +
Preference number: 5 (lower is better)
Translates to: RSQSLPLGLRARHLC*TGSNVPEKVMCRLW
Trigger: CCATAGCCGACACATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAGGCCTAATGGCAGGCTCTGCGAGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS GCA 90 bp TGGCGCTCGCAGAGCCTGCCATTAGGCCTCAGGGCCCGGCACTTGTaGTGCACAGGCTCAAACGTCCCTGAAAAGGTAATGTGTCGGCTA +
Preference number: 5 (lower is better)
Translates to: WRSQSLPLGLRARHL*CTGSNVPEKVMCRL
Trigger: TAGCCGACACATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAGGCCTAATGGCAGGCTCTGCGAGCGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS CCA 90 bp GAGGAGGGAGAGGGAGATGATAAGCAGTCCTGGAGCCGCAACATCTaGGCAGCTGCAGAGGTGGGGTCTGAGGCCTCCTCTTCTCTTCTC +
Preference number: 5 (lower is better)
Translates to: EEGEGDDKQSWSRNI*AAAEVGSEASSSLL
Trigger: GAGAAGAGAAGAGGAGGCCTCAGACCCCACCTCTGCAGCTGCCCAGATGTTGCGGCTCCAGGACTGCTTATCATCTCCCTCTCCCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 90 bp TATAGGCCTGCCCAAACTTCTCATTCCAACCTTCCACAGCTTGCATaGCTGCCTGCCTTAGCCTCTGAGCTGCCTCCCGAGGGGGTGGCA +
Preference number: 5 (lower is better)
Translates to: YRPAQTSHSNLPQLA*LPALASELPPEGVA
Trigger: TGCCACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCAGGCAGCCATGCAAGCTGTGGAAGGTTGGAATGAGAAGTTTGGGCAGGCCTATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 90 bp TGTGGGAACCCAGTCCATGGCTCCGCAGGAAATCATCCGGGTCGCTaGGTTCGTCCTCATCCCTGGAGGAGTCTTTCATGGCTGTTTGGG +
Preference number: 5 (lower is better)
Translates to: CGNPVHGSAGNHPGR*VRPHPWRSLSWLFG
Trigger: CCCAAACAGCCATGAAAGACTCCTCCAGGGATGAGGACGAACCCAGCGACCCGGATGATTTCCTGCGGAGCCATGGACTGGGTTCCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 90 bp GAGGGGACTTCAACATCCAGCGTGTACTTGTGGGAACCCAGTCCATaGCTCCGCAGGAAATCATCCGGGTCGCTGGGTTCGTCCTCATCC +
Preference number: 5 (lower is better)
Translates to: EGTSTSSVYLWEPSP*LRRKSSGSLGSSSS
Trigger: GGATGAGGACGAACCCAGCGACCCGGATGATTTCCTGCGGAGCCATGGACTGGGTTCCCACAAGTACACGCTGGATGTTGAAGTCCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CATGGTGGCGCCTTTAGTCCCGGGGCTTGGGAGGCAGAAGCAGGAGGATCTCTGCCCAGGAGCACACAGTaGGCAGAAACTTGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: HGGAFSPGAWEAEAGGSLPRSTQ*AETCSG
Trigger: TCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGGG...CAGAGATCCTCCTGCTTCTGCCTCCCAAGCCCCGGGACTAAAGGCGCCACCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp GCCAGATGGAGTGCCTGCCCCTATCCAACTCCAATGCAGGTACGTCATCCTGAATCGGGCTCGCTCTGCTaGCTTCTGGGCTTCCTCTGG +
Preference number: 5 (lower is better)
Translates to: ARWSACPYPTPMQVRHPESGSLC*LLGFLW
Trigger: CCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGA...TTCAGGATGACGTACCTGCATTGGAGTTGGATAGGGGCAGGCACTCCATCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 90 bp GGCTCCGCAGGAAATCATCCGGGTCGCTGGGTTCGTCCTCATCCCTaGAGGAGTCTTTCATGGCTGTTTGGGGTAGTGCCTTCAGACCAA +
Preference number: 5 (lower is better)
Translates to: GSAGNHPGRWVRPHP*RSLSWLFGVVPSDQ
Trigger: TTGGTCTGAAGGCACTACCCCAAACAGCCATGAAAGACTCCTCCAGGGATGAGGACGAACCCAGCGACCCGGATGATTTCCTGCGGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGCTCAGGGCCCGGCACTaGTGCTGCACAGGCTCAAAC +
Preference number: 5 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVLRARH*CCTGSN
Trigger: GTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAG...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS TCA 90 bp AGGCCTCAGGGCCCGGCACTTGTGCTGCACAGGCTCAAACGTCCCTaGAAAGGTAATGTGTCGGCTATGGAGCATCTCAGAAACATGGGC +
Preference number: 5 (lower is better)
Translates to: RPQGPALVLHRLKRP*KGNVSAMEHLRNMG
Trigger: GCCCATGTTTCTGAGATGCTCCATAGCCGACACATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS CCA 90 bp ACCTTCAGACCATCTGAGGGGACTTCAACATCCAGCGTGTACTTGTaGGAACCCAGTCCATGGCTCCGCAGGAAATCATCCGGGTCGCTG +
Preference number: 5 (lower is better)
Translates to: TFRPSEGTSTSSVYL*EPSPWLRRKSSGSL
Trigger: CAGCGACCCGGATGATTTCCTGCGGAGCCATGGACTGGGTTCCCACAAGTACACGCTGGATGTTGAAGTCCCCTCAGATGGTCTGAAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCCTCAGGGCCCGGCACTaGTGCTGCACAGGCTCAAAC +
Preference number: 5 (lower is better)
Translates to: PSYTPLISILKRQRQEDLLRARH*CCTGSN
Trigger: GTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAG...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACAGCTCTGTCTTCTGGGTaGAGAGGCTGCCCCTTGTCA +
Preference number: 5 (lower is better)
Translates to: ELETSLVYTVGSKTARATALSSG*RGCPLS
Trigger: TGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAGC...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp TTACATGCAAGTGCTTTACCTGCTGAGCCACCTCCCTTGTCCTCTGCTGAGGTCGAGGCAACCAGGTCCTaGCTACAGCATGGCTGCTCT +
Preference number: 5 (lower is better)
Translates to: LHASALPAEPPPLSSAEVEATRS*LQHGCS
Trigger: AGAGCAGCCATGCTGTAGCAAGGACCTGGTTGCCTC...GACCTCAGCAGAGGACAAGGGAGGTGGCTCAGCAGGTAAAGCACTTGCATGTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGTCGGGCTCGCTCTGCTaGCTTCTGGGCTTCCTCTGG +
Preference number: 5 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRSGSLC*LLGFLW
Trigger: CCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGA...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp GAGTTGGAGACCAGCCTGGTCTACACTGTGGGCTCTAAGACTGCCAGAGCTACACTGAAGCTGCTGCCTTaGTTCACGGGCTCTGTCTTC +
Preference number: 5 (lower is better)
Translates to: ELETSLVYTVGSKTARATLKLLP*FTGSVF
Trigger: GAAGACAGAGCCCGTGAACAAAGGCAGCAGCTTCAG...TGTAGCTCTGGCAGTCTTAGAGCCCACAGTGTAGACCAGGCTGGTCTCCAACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS TCA 90 bp GAGTCCCGAGCAGCATGGAGCACAGCAAGGTTGTCTTCATTCTCCTaGACCTTCAGACCATCTGAGGGGACTTCAACATCCAGCGTGTAC +
Preference number: 5 (lower is better)
Translates to: ESRAAWSTARLSSFS*TFRPSEGTSTSSVY
Trigger: GTACACGCTGGATGTTGAAGTCCCCTCAGATGGTCTGAAGGTTCAGGAGAATGAAGACAACCTTGCTGTGCTCCATGCTGCTCGGGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 90 bp GTCCCTGAAAAGGTAATGTGTCGGCTATGGAGCATCTCAGAAACATaGGCACTGTCCACCTCTTCCTCCACCTCGCTGGGTTTCCAGAAG +
Preference number: 5 (lower is better)
Translates to: VPEKVMCRLWSISET*ALSTSSSTSLGFQK
Trigger: CTTCTGGAAACCCAGCGAGGTGGAGGAAGAGGTGGACAGTGCCCATGTTTCTGAGATGCTCCATAGCCGACACATTACCTTTTCAGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS CCA 90 bp TGCTGCACAGGCTCAAACGTCCCTGAAAAGGTAATGTGTCGGCTATaGAGCATCTCAGAAACATGGGCACTGTCCACCTCTTCCTCCACC +
Preference number: 5 (lower is better)
Translates to: CCTGSNVPEKVMCRL*SISETWALSTSSST
Trigger: GGTGGAGGAAGAGGTGGACAGTGCCCATGTTTCTGAGATGCTCCATAGCCGACACATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CCATCGTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCACATCCAGCGTGTACTaGTGGGAACCCAGTCCATGG +
Preference number: 5 (lower is better)
Translates to: PSYTPLISILKRQRQEDLTSSVY*WEPSPW
Trigger: CCATGGACTGGGTTCCCACAAGTACACGCTGGATGT...GAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTACGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGTTCCCTTTGCCTTTCTaGCTGGACCTGGATGAACCG +
Preference number: 5 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVFPLPF*LDLDEP
Trigger: CGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGAA...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS TCA 90 bp CTGTCCACCTCTTCCTCCACCTCGCTGGGTTTCCAGAAGCGGTGTTaGGAGTCAGATTTAAGAATCTTTCCAGCTGTTAGCTGCTCCTGG +
Preference number: 5 (lower is better)
Translates to: LSTSSSTSLGFQKRC*ESDLRIFPAVSCSW
Trigger: CCAGGAGCAGCTAACAGCTGGAAAGATTCTTAAATCTGACTCTCAACACCGCTTCTGGAAACCCAGCGAGGTGGAGGAAGAGGTGGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGACATCCAGCGTGTACTaGTGGGAACCCAGTCCATGG +
Preference number: 5 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRTSSVY*WEPSPW
Trigger: CCATGGACTGGGTTCCCACAAGTACACGCTGGATGT...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGCCCAGGAGCACACAGTaGGCAGAAACTTGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRPRSTQ*AETCSG
Trigger: TCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGGG...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTCGGGCTCGCTCTGCTaGCTTCTGGGCTTCCTCTGG +
Preference number: 5 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSSGSLC*LLGFLW
Trigger: CCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATGAGAGGGTGGGTGTGTGCTCCTCGGAAGACTaGCAAATTTTCTTCAGTTCC +
Preference number: 5 (lower is better)
Translates to: RTVRVPKRDHVSNERVGVCSSED*QIFFSS
Trigger: GGAACTGAAGAAAATTTGCAAGTCTTCCGAGGAGCA...CACACCCACCCTCTCATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp TCAGAGATCCACCTGCCTTGCCTTCTGAGTGCTGGGATTAAAGATGTGCCTACCACAGTTGGCAGAAACTaGTTCTGGATGAGTTTGAGC +
Preference number: 5 (lower is better)
Translates to: SEIHLPCLLSAGIKDVPTTVGRN*FWMSLS
Trigger: GCTCAAACTCATCCAGAACAAGTTTCTGCCAACTGT...GGTAGGCACATCTTTAATCCCAGCACTCAGAAGGCAAGGCAGGTGGATCTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCGCTCTGTCTTCTGGGTaGAGAGGCTGCCCCTTGTCA +
Preference number: 5 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSALSSG*RGCPLS
Trigger: TGACAAGGGGCAGCCTCTCAACCCAGAAGACAGAGC...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS CCA 90 bp CTCTGTCATGCTAGACGCTTCACCAAAGAATTTATCCTCTGGGCATaGTACAAAATCCAAGGGCACCAGCAGCTTAAAGCAGTTCTCCAC +
Preference number: 5 (lower is better)
Translates to: LCHARRFTKEFILWA*YKIQGHQQLKAVLH
Trigger: GTGGAGAACTGCTTTAAGCTGCTGGTGCCCTTGGATTTTGTACCATGCCCAGAGGATAAATTCTTTGGTGAAGCGTCTAGCATGACAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp CCATACTGGCCTAGGATTCAGGTCCTGTTTATGTCCAAGTGCTGGGATTACAGGACAGTTGGCAGAAACTaGTTCTGGATGAGTTTGAGC +
Preference number: 5 (lower is better)
Translates to: PYWPRIQVLFMSKCWDYRTVGRN*FWMSLS
Trigger: GCTCAAACTCATCCAGAACAAGTTTCTGCCAACTGT...CCTGTAATCCCAGCACTTGGACATAAACAGGACCTGAATCCTAGGCCAGTATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 90 bp TACATTTCTTCCATTTCCCTCTTAGCCCGGTCTGCACTTTCTCTGTaGATTTTATCCAGGTGCTTCTGCTTCTCCTCTTCTCGCTTCCTT +
Preference number: 5 (lower is better)
Translates to: YISSISLLARSALSL*ILSRCFCFSSSRFL
Trigger: AAGGAAGCGAGAAGAGGAGAAGCAGAAGCACCTGGATAAAATCCACAGAGAAAGTGCAGACCGGGCTAAGAGGGAAATGGAAGAAATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp TACAAAATGAGTTACCGGACAGTCAGGGTTCCAAAGAGAGACCATGTCTCAAATCCCAGGAGCACACAGTaGGCAGAAACTTGTTCTGGA +
Preference number: 5 (lower is better)
Translates to: YKMSYRTVRVPKRDHVSNPRSTQ*AETCSG
Trigger: TCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGGG...ATTTGAGACATGGTCTCTCTTTGGAACCCTGACTGTCCGGTAACTCATTTTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCAGAGGCAACCAGGTCCTaGCTACAGCATGGCTGCTCT +
Preference number: 5 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSEATRS*LQHGCS
Trigger: AGAGCAGCCATGCTGTAGCAAGGACCTGGTTGCCTC...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp GTACACGCCCTTAATCTCAATACTGAAGAGGCAGAGGCAGGAGGATCTCTGAGTCAGCGCATAATTAAATaGGTTTGCAAACTTCTCGTG +
Preference number: 5 (lower is better)
Translates to: VHALNLNTEEAEAGGSLSQRIIK*VCKLLV
Trigger: CACGAGAAGTTTGCAAACCAATTTAATTATGCGCTG...ACTCAGAGATCCTCCTGCCTCTGCCTCTTCAGTATTGAGATTAAGGGCGTGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS GCA 90 bp TTCAATTTCATCATACATTTCTTCCATTTCCCTCTTAGCCCGGTCTaGACTTTCTCTGTGGATTTTATCCAGGTGCTTCTGCTTCTCCTC +
Preference number: 5 (lower is better)
Translates to: FNFIIHFFHFPLSPV*TFSVDFIQVLLLLL
Trigger: GAGGAGAAGCAGAAGCACCTGGATAAAATCCACAGAGAAAGTGCAGACCGGGCTAAGAGGGAAATGGAAGAAATGTATGATGAAATTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp TATGGCAGGAAGTTATGCTGGGTACAGTACTGTAAGTTGGTATCCATGGTCTTTTGCTCCTCGGAAGACTaGCAAATTTTCTTCAGTTCC +
Preference number: 5 (lower is better)
Translates to: YGRKLCWVQYCKLVSMVFCSSED*QIFFSS
Trigger: GGAACTGAAGAAAATTTGCAAGTCTTCCGAGGAGCA...AAAGACCATGGATACCAACTTACAGTACTGTACCCAGCATAACTTCCTGCCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp GTTTTTAAAGTACTCCTCTACAGGACTGGATTTCATTGGTGCCATGATGGTTCCTGCTCCTCGGAAGACTaGCAAATTTTCTTCAGTTCC +
Preference number: 5 (lower is better)
Translates to: VFKVLLYRTGFHWCHDGSCSSED*QIFFSS
Trigger: GGAACTGAAGAAAATTTGCAAGTCTTCCGAGGAGCA...GGAACCATCATGGCACCAATGAAATCCAGTCCTGTAGAGGAGTACTTTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp AACCATATCCCCTGGCCTCCTGGAGAGTATTTTAATGCATCACTACATTGTTACACAGTTGGCAGAAACTaGTTCTGGATGAGTTTGAGC +
Preference number: 5 (lower is better)
Translates to: NHIPWPPGEYFNASLHCYTVGRN*FWMSLS
Trigger: GCTCAAACTCATCCAGAACAAGTTTCTGCCAACTGT...GTAACAATGTAGTGATGCATTAAAATACTCTCCAGGAGGCCAGGGGATATGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp TCTATGTCCATCAGAGATATTTGCCTATATCAGAGATATTGTTGTTGTTGCCTACTGAAGCTGCTGCCTTaGTTCACGGGCTCTGTCTTC +
Preference number: 5 (lower is better)
Translates to: SMSIRDICLYQRYCCCCLLKLLP*FTGSVF
Trigger: GAAGACAGAGCCCGTGAACAAAGGCAGCAGCTTCAG...TAGGCAACAACAACAATATCTCTGATATAGGCAAATATCTCTGATGGACATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp ATGGCTATACTCGGCTTGCAGTGTTTTATTAGATTTTTGCATCTATGTCCATCATTCCCTTTGCCTTTCTaGCTGGACCTGGATGAACCG +
Preference number: 5 (lower is better)
Translates to: MAILGLQCFIRFLHLCPSFPLPF*LDLDEP
Trigger: CGGTTCATCCAGGTCCAGCAAGAAAGGCAAAGGGAA...TGATGGACATAGATGCAAAAATCTAATAAAACACTGCAAGCCGAGTATAGCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS-3UTR CAA 90 bp GGTGCCATGATGGTTCCAGTTCAACTTGAATTCTATTCCTTTGAATCACGTCTTCAGCGCATAATTAAATaGGTTTGCAAACTTCTCGTG +
Preference number: 5 (lower is better)
Translates to: GAMMVPVQLEFYSFESRLQRIIK*VCKLLV
Trigger: CACGAGAAGTTTGCAAACCAATTTAATTATGCGCTG...AAGACGTGATTCAAAGGAATAGAATTCAAGTTGAACTGGAACCATCATGGCACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS TCA 72 bp CCTTCCACAGCTTGCATGGCTGCCTGCCTTAGCCTCTaGGCTGCCTCCCGAGGGGGTGGCAGGGGACGGTCA +
Preference number: 6 (lower is better)
Translates to: PSTACMAACLSL*AASRGGGRGRS
Trigger: TGACCGTCCCCTGCCACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCAGGCAGCCATGCAAGCTGTGGAAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp TGCTCGGGCTCGCTCTGCTTGCTTCTGGGCTTCCTCTaGCCCAGGAAGTACCCTGGTAGAGGAGGGAGAGGG +
Preference number: 6 (lower is better)
Translates to: CSGSLCLLLGFL*PRKYPGRGGRG
Trigger: CCCTCTCCCTCCTCTACCAGGGTACTTCCTGGGCCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS GCA 72 bp CCGAAGGGTACAATGGGTGCTCGGGCTCGCTCTGCTTaGTTCTGGGCTTCCTCTGGCCCAGGAAGTACCCTG +
Preference number: 6 (lower is better)
Translates to: PKGTMGARARSA*FWASSGPGSTL
Trigger: CAGGGTACTTCCTGGGCCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CAA 90 bp TCCTGGCGCTCGCAGAGCCTGCCATTAGGCCTCAGGGCCCGGCACTaGTGCTGCACAGGCTCAAACGTCCCTGAAAAGGTAATGTGTCGG +
Preference number: 6 (lower is better)
Translates to: SWRSQSLPLGLRARH*CCTGSNVPEKVMCR
Trigger: CCGACACATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAGGCCTAATGGCAGGCTCTGCGAGCGCCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS GCA 72 bp CACTCCGAAGGGTACAATGGGTGCTCGGGCTCGCTCTaGTTGCTTCTGGGCTTCCTCTGGCCCAGGAAGTAC +
Preference number: 6 (lower is better)
Translates to: HSEGYNGCSGSL*LLLGFLWPRKY
Trigger: GTACTTCCTGGGCCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTCGGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp GAGGGAGATGATAAGCAGTCCTGGAGCCGCAACATCTaGGCAGCTGCAGAGGTGGGGTCTGAGGCCTCCTCT +
Preference number: 6 (lower is better)
Translates to: EGDDKQSWSRNI*AAAEVGSEASS
Trigger: AGAGGAGGCCTCAGACCCCACCTCTGCAGCTGCCCAGATGTTGCGGCTCCAGGACTGCTTATCATCTCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp GGTACAATGGGTGCTCGGGCTCGCTCTGCTTGCTTCTaGGCTTCCTCTGGCCCAGGAAGTACCCTGGTAGAG +
Preference number: 6 (lower is better)
Translates to: GTMGARARSACF*ASSGPGSTLVE
Trigger: CTCTACCAGGGTACTTCCTGGGCCAGAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp GGCCCCAGTAACACAGGTCCACTCCGAAGGGTACAATaGGTGCTCGGGCTCGCTCTGCTTGCTTCTGGGCTT +
Preference number: 6 (lower is better)
Translates to: GPSNTGPLRRVQ*VLGLALLASGL
Trigger: AAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTCGGAGTGGACCTGTGTTACTGGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS GCA 72 bp CCAGTAACACAGGTCCACTCCGAAGGGTACAATGGGTaGTCGGGCTCGCTCTGCTTGCTTCTGGGCTTCCTC +
Preference number: 6 (lower is better)
Translates to: PVTQVHSEGYNG*SGSLCLLLGFL
Trigger: GAGGAAGCCCAGAAGCAAGCAGAGCGAGCCCGAGCACCCATTGTACCCTTCGGAGTGGACCTGTGTTACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp CCAGTCCATGGCTCCGCAGGAAATCATCCGGGTCGCTaGGTTCGTCCTCATCCCTGGAGGAGTCTTTCATGG +
Preference number: 6 (lower is better)
Translates to: PVHGSAGNHPGR*VRPHPWRSLSW
Trigger: CCATGAAAGACTCCTCCAGGGATGAGGACGAACCCAGCGACCCGGATGATTTCCTGCGGAGCCATGGACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS GCA 72 bp CAGAGCCTGCCATTAGGCCTCAGGGCCCGGCACTTGTaGTGCACAGGCTCAAACGTCCCTGAAAAGGTAATG +
Preference number: 6 (lower is better)
Translates to: QSLPLGLRARHL*CTGSNVPEKVM
Trigger: CATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAGGCCTAATGGCAGGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS CCA 72 bp GCCCAAACTTCTCATTCCAACCTTCCACAGCTTGCATaGCTGCCTGCCTTAGCCTCTGAGCTGCCTCCCGAG +
Preference number: 6 (lower is better)
Translates to: AQTSHSNLPQLA*LPALASELPPE
Trigger: CTCGGGAGGCAGCTCAGAGGCTAAGGCAGGCAGCCATGCAAGCTGTGGAAGGTTGGAATGAGAAGTTTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp TCAACATCCAGCGTGTACTTGTGGGAACCCAGTCCATaGCTCCGCAGGAAATCATCCGGGTCGCTGGGTTCG +
Preference number: 6 (lower is better)
Translates to: STSSVYLWEPSP*LRRKSSGSLGS
Trigger: CGAACCCAGCGACCCGGATGATTTCCTGCGGAGCCATGGACTGGGTTCCCACAAGTACACGCTGGATGTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS TCA 72 bp GGGGTGGCAGGGGACGGTCACTATCTGTGCCCAGTGTaGGCTCGAGGAATTCCTGGAAGTCAGAAACAAGCA +
Preference number: 6 (lower is better)
Translates to: GVAGDGHYLCPV*ARGIPGSQKQA
Trigger: TGCTTGTTTCTGACTTCCAGGAATTCCTCGAGCTCACACTGGGCACAGATAGTGACCGTCCCCTGCCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS GCA 72 bp AGCCTGCCATTAGGCCTCAGGGCCCGGCACTTGTGCTaGACAGGCTCAAACGTCCCTGAAAAGGTAATGTGT +
Preference number: 6 (lower is better)
Translates to: SLPLGLRARHLC*TGSNVPEKVMC
Trigger: ACACATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCCCTGAGGCCTAATGGCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS TCA 72 bp GGCCCGGCACTTGTGCTGCACAGGCTCAAACGTCCCTaGAAAGGTAATGTGTCGGCTATGGAGCATCTCAGA +
Preference number: 6 (lower is better)
Translates to: GPALVLHRLKRP*KGNVSAMEHLR
Trigger: TCTGAGATGCTCCATAGCCGACACATTACCTTTTCAGGGACGTTTGAGCCTGTGCAGCACAAGTGCCGGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS GCA 72 bp TATGCAGAGGCAACCAGGTCCTTGCTACAGCATGGCTaGTCTTCATCCTGGGGTCCAGAGAGACCAGACTCA +
Preference number: 6 (lower is better)
Translates to: YAEATRSLLQHG*SSSWGPERPDS
Trigger: TGAGTCTGGTCTCTCTGGACCCCAGGATGAAGAGCAGCCATGCTGTAGCAAGGACCTGGTTGCCTCTGCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp CCATCTGAGGGGACTTCAACATCCAGCGTGTACTTGTaGGAACCCAGTCCATGGCTCCGCAGGAAATCATCC +
Preference number: 6 (lower is better)
Translates to: PSEGTSTSSVYL*EPSPWLRRKSS
Trigger: GGATGATTTCCTGCGGAGCCATGGACTGGGTTCCCACAAGTACACGCTGGATGTTGAAGTCCCCTCAGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp TGGACCCAGGAGCACACAGTTGGCAGAAACTTGTTCTaGATGAGTTTGAGCGAGTCCCGAGCAGCATGGAGC +
Preference number: 6 (lower is better)
Translates to: WTQEHTVGRNLF*MSLSESRAAWS
Trigger: GCTCCATGCTGCTCGGGACTCGCTCAAACTCATCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGGGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CAA 72 bp AACCGCTGGACCCAGGAGCACACAGTTGGCAGAAACTaGTTCTGGATGAGTTTGAGCGAGTCCCGAGCAGCA +
Preference number: 6 (lower is better)
Translates to: NRWTQEHTVGRN*FWMSLSESRAA
Trigger: TGCTGCTCGGGACTCGCTCAAACTCATCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGGGTCCAGCGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp TGCACGGGTAAACCGCTGGACCCAGGAGCACACAGTTaGCAGAAACTTGTTCTGGATGAGTTTGAGCGAGTC +
Preference number: 6 (lower is better)
Translates to: CTGKPLDPGAHS*QKLVLDEFERV
Trigger: GACTCGCTCAAACTCATCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGGGTCCAGCGGTTTACCCGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CAA 72 bp AGACCATCTGAGGGGACTTCAACATCCAGCGTGTACTaGTGGGAACCCAGTCCATGGCTCCGCAGGAAATCA +
Preference number: 6 (lower is better)
Translates to: RPSEGTSTSSVY*WEPSPWLRRKS
Trigger: TGATTTCCTGCGGAGCCATGGACTGGGTTCCCACAAGTACACGCTGGATGTTGAAGTCCCCTCAGATGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CAA 72 bp CAGCTGTACCTTTCTCCAGAGTCTTCAGTGGGGCCTTaGGCTCCAGCCCATATTCAGCTCGTAGATGGTCAG +
Preference number: 6 (lower is better)
Translates to: QLYLSPESSVGP*APAHIQLVDGQ
Trigger: CTGACCATCTACGAGCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAGAAAGGTACAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CAA 90 bp TGGACCCAGGAGCACACAGTTGGCAGAAACTTGTTCTGGATGAGTTaGAGCGAGTCCCGAGCAGCATGGAGCACAGCAAGGTTGTCTTCA +
Preference number: 6 (lower is better)
Translates to: WTQEHTVGRNLFWMS*SESRAAWSTARLSS
Trigger: TGAAGACAACCTTGCTGTGCTCCATGCTGCTCGGGACTCGCTCAAACTCATCCAGAACAAGTTTCTGCCAACTGTGTGCTCCTGGGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS TCA 72 bp GCAGCATGGAGCACAGCAAGGTTGTCTTCATTCTCCTaGACCTTCAGACCATCTGAGGGGACTTCAACATCC +
Preference number: 6 (lower is better)
Translates to: AAWSTARLSSFS*TFRPSEGTSTS
Trigger: GGATGTTGAAGTCCCCTCAGATGGTCTGAAGGTTCAGGAGAATGAAGACAACCTTGCTGTGCTCCATGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp TGGGGTAGTGCCTTCAGACCAACAACAGATCCTACATaGTATGCAGAGGCAACCAGGTCCTTGCTACAGCAT +
Preference number: 6 (lower is better)
Translates to: WGSAFRPTTDPT*YAEATRSLLQH
Trigger: ATGCTGTAGCAAGGACCTGGTTGCCTCTGCATACCATGTAGGATCTGTTGTTGGTCTGAAGGCACTACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp GGCTCAAACGTCCCTGAAAAGGTAATGTGTCGGCTATaGAGCATCTCAGAAACATGGGCACTGTCCACCTCT +
Preference number: 6 (lower is better)
Translates to: GSNVPEKVMCRL*SISETWALSTS
Trigger: AGAGGTGGACAGTGCCCATGTTTCTGAGATGCTCCATAGCCGACACATTACCTTTTCAGGGACGTTTGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087864.12
ENSMUST00000202816.2
CDS TCA 72 bp AAGGTTGTCTTCATTCTCCTGAACCTTCAGACCATCTaGGGGGACTTCAACATCCAGCGTGTACTTGTGGGA +
Preference number: 6 (lower is better)
Translates to: KVVFILLNLQTI*GDFNIQRVLVG
Trigger: TCCCACAAGTACACGCTGGATGTTGAAGTCCCCTCAGATGGTCTGAAGGTTCAGGAGAATGAAGACAACCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp TCCATTTCCCTCTTAGCCCGGTCTGCACTTTCTCTGTaGATTTTATCCAGGTGCTTCTGCTTCTCCTCTTCT +
Preference number: 6 (lower is better)
Translates to: SISLLARSALSL*ILSRCFCFSSS
Trigger: AGAAGAGGAGAAGCAGAAGCACCTGGATAAAATCCACAGAGAAAGTGCAGACCGGGCTAAGAGGGAAATGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS CCA 72 bp TGTCATGCTAGACGCTTCACCAAAGAATTTATCCTCTaGGCATGGTACAAAATCCAAGGGCACCAGCAGCTT +
Preference number: 6 (lower is better)
Translates to: CHARRFTKEFIL*AWYKIQGHQQL
Trigger: AAGCTGCTGGTGCCCTTGGATTTTGTACCATGCCCAGAGGATAAATTCTTTGGTGAAGCGTCTAGCATGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2
CDS GCA 72 bp ATCATACATTTCTTCCATTTCCCTCTTAGCCCGGTCTaGACTTTCTCTGTGGATTTTATCCAGGTGCTTCTG +
Preference number: 6 (lower is better)
Translates to: IIHFFHFPLSPV*TFSVDFIQVLL
Trigger: CAGAAGCACCTGGATAAAATCCACAGAGAAAGTGCAGACCGGGCTAAGAGGGAAATGGAAGAAATGTATGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087864.12
ENSMUST00000202046.4
ENSMUST00000202816.2