RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UTS2R (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039321

Ensembl transcript IDs: ENSMUST00000039044.2

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTCAGCACACCAGGGTCTTCAGAAGAGGGTCTGGGCCACAGCTTCTaGAGCCCCTCAGAGACTGGTTTGAAGCAGGAATGTATTGGCATC +
Preference number: 1 (lower is better)
Translates to: LSTPGSSEEGLGHSF*SPSETGLKQECIGI
Trigger: GATGCCAATACATTCCTGCTTCAAACCAGTCTCTGAGGGGCTTCAGAAGCTGTGGCCCAGACCCTCTTCTGAAGACCCTGGTGTGCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR CCA 90 bp AGTGAGTTAGGTTTGAGTAGGGGATTCTGGGAATGGGTTCCTGAGTaGCCTGCCTTTGGGTCCTTTCCTACCCGCAGGGTCACACAAAGC +
Preference number: 1 (lower is better)
Translates to: SELGLSRGFWEWVPE*PAFGSFPTRRVTQS
Trigger: GCTTTGTGTGACCCTGCGGGTAGGAAAGGACCCAAAGGCAGGCCACTCAGGAACCCATTCCCAGAATCCCCTACTCAAACCTAACTCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR CCA 90 bp GTTTATTGTTCCATGTGCATATGGGAGCAAGAAGCTACCGTGGAATaGATGGGGAGAGAGAGGGTAGAGATGCCTGCAGGCCCCTTACCA +
Preference number: 1 (lower is better)
Translates to: VYCSMCIWEQEATVE*MGRERVEMPAGPLP
Trigger: TGGTAAGGGGCCTGCAGGCATCTCTACCCTCTCTCTCCCCATCCATTCCACGGTAGCTTCTTGCTCCCATATGCACATGGAACAATAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR-3UTR TCA 90 bp TGGATGGGGAGAGAGAGGGTAGAGATGCCTGCAGGCCCCTTACCAACCAATGGGCTGGGCCACAGCTTCTaGAGCCCCTCAGAGACTGGT +
Preference number: 2 (lower is better)
Translates to: WMGRERVEMPAGPLPTNGLGHSF*SPSETG
Trigger: ACCAGTCTCTGAGGGGCTTCAGAAGCTGTGGCCCAG...CCCATTGGTTGGTAAGGGGCCTGCAGGCATCTCTACCCTCTCTCTCCCCATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR-3UTR TCA 90 bp CCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCAAAGGTCAGGTTACACCTCAGAGACTGGTTTaGAGCAGGAATGTATTGGCA +
Preference number: 2 (lower is better)
Translates to: PMGEGPQAGRAYIKGQVTPQRLV*SRNVLA
Trigger: TGCCAATACATTCCTGCTTCAAACCAGTCTCTGAGG...TGTAACCTGACCTTTGATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR CAA 90 bp GAGAAGAGGGGACTTTCCACAAGAAGACAGACAAGTGAGTTAGGTTaGAGTAGGGGATTCTGGGAATGGGTTCCTGAGTGGCCTGCCTTT +
Preference number: 2 (lower is better)
Translates to: EKRGLSTRRQTSELG*SRGFWEWVPEWPAF
Trigger: AAAGGCAGGCCACTCAGGAACCCATTCCCAGAATCCCCTACTCAAACCTAACTCACTTGTCTGTCTTCTTGTGGAAAGTCCCCTCTTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR-3UTR CAA 90 bp GGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCAACTGAGTGGCCTGCCTTaGGGTCCTTTCCTACCCGCA +
Preference number: 3 (lower is better)
Translates to: GPLPTNGGGSSGWKGLHQLSGLP*GPFLPA
Trigger: TGCGGGTAGGAAAGGACCCAAAGGCAGGCCACTCAG...TTGATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR-3UTR CAA 90 bp CAGGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCCCCTCAGAGACTGGTTaGAAGCAGGAATGTATTGGC +
Preference number: 3 (lower is better)
Translates to: QAPYQPMGEGPQAGRAYIPSETG*KQECIG
Trigger: GCCAATACATTCCTGCTTCAAACCAGTCTCTGAGGG...GATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR TCA 72 bp CCAGGGTCTTCAGAAGAGGGTCTGGGCCACAGCTTCTaGAGCCCCTCAGAGACTGGTTTGAAGCAGGAATGT +
Preference number: 3 (lower is better)
Translates to: PGSSEEGLGHSF*SPSETGLKQEC
Trigger: ACATTCCTGCTTCAAACCAGTCTCTGAGGGGCTTCAGAAGCTGTGGCCCAGACCCTCTTCTGAAGACCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR CCA 72 bp AGACAGACAAGTGAGTTAGGTTTGAGTAGGGGATTCTaGGAATGGGTTCCTGAGTGGCCTGCCTTTGGGTCC +
Preference number: 3 (lower is better)
Translates to: RQTSELGLSRGF*EWVPEWPAFGS
Trigger: GGACCCAAAGGCAGGCCACTCAGGAACCCATTCCCAGAATCCCCTACTCAAACCTAACTCACTTGTCTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp ATGCCTGCAGGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCGTCAGTGGCATGGCCTaGTGGTACTGGGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: MPAGPLPTNGGGSSGWKGVSGMA*WYWASS
Trigger: GCTGCTGGCCCAGTACCACCAGGCCATGCCACTGAC...GCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCCTGCAGGCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp TGGGAATGGGTTCCTGAGTGGCCTGCCTTTGGGTCCTTTCCTACCCGCAGGGTCCGGCCCGAGTCCTGCTaGAGGTGGACACGGCTGGAC +
Preference number: 4 (lower is better)
Translates to: WEWVPEWPAFGSFPTRRVRPESC*RWTRLD
Trigger: GTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCG...GACCCTGCGGGTAGGAAAGGACCCAAAGGCAGGCCACTCAGGAACCCATTCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR GCA 90 bp GCCTGCAGGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTGAAGCTCAGACGCAGTaGTTCTGGACACGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: ACRPLTNQWGRVLRLEGLEAQTQ*FWTRPA
Trigger: TGCTGGCCGTGTCCAGAAGCACTGCGTCTGAGCTTC...AAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCCTGCAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR TCA 90 bp CAGGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCCAGCCAGGGCCAGGTTaGCCACATAGACGTACATGG +
Preference number: 4 (lower is better)
Translates to: QAPYQPMGEGPQAGRAYIQPGPG*PHRRTW
Trigger: CCATGTACGTCTATGTGGTCAACCTGGCCCTGGCTG...GATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR TCA 90 bp TGGGAATGGGTTCCTGAGTGGCCTGCCTTTGGGTCCTTTCCTACCCGCAGGGTCTATAGAGCAGCCCAATaGCCAGGCCAGGCCCCACAA +
Preference number: 4 (lower is better)
Translates to: WEWVPEWPAFGSFPTRRVYRAAQ*PGQAPQ
Trigger: TTGTGGGGCCTGGCCTGGTCATTGGGCTGCTCTATA...GACCCTGCGGGTAGGAAAGGACCCAAAGGCAGGCCACTCAGGAACCCATTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR TCA 90 bp CAGGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCGCCGCCGTGTCTGCTTaGAGGAAGCTTGCTGGGATA +
Preference number: 4 (lower is better)
Translates to: QAPYQPMGEGPQAGRAYIAAVSA*RKLAGI
Trigger: TATCCCAGCAAGCTTCCTTCAAGCAGACACGGCGGC...GATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR GCA 90 bp TGGGAATGGGTTCCTGAGTGGCCTGCCTTTGGGTCCTTTCCTACCCGCAGGGTCCCAGAGTGTACACATTaGCCACCACGCCCACCACAC +
Preference number: 4 (lower is better)
Translates to: WEWVPEWPAFGSFPTRRVPECTH*PPRPPH
Trigger: GTGTGGTGGGCGTGGTGGGCAATGTGTACACTCTGG...GACCCTGCGGGTAGGAAAGGACCCAAAGGCAGGCCACTCAGGAACCCATTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR GCA 90 bp AGAGAGAGGGTAGAGATGCCTGCAGGCCCCTTACCAACCAATGGGGGAGGGTCCTACTGGGCCAGCAGCTaGCATAGCCAGAAGGGCAGA +
Preference number: 4 (lower is better)
Translates to: RERVEMPAGPLPTNGGGSYWASS*HSQKGR
Trigger: TCTGCCCTTCTGGCTATGGCAGCTGCTGGCCCAGTA...GGACCCTCCCCCATTGGTTGGTAAGGGGCCTGCAGGCATCTCTACCCTCTCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp TGGATGGGGAGAGAGAGGGTAGAGATGCCTGCAGGCCCCTTACCAACCAATGGGGGTCTTGCAGGGAGCTaGGATCTGTTGGGCCAGTCC +
Preference number: 4 (lower is better)
Translates to: WMGRERVEMPAGPLPTNGGLAGS*DLLGQS
Trigger: GGACTGGCCCAACAGATCCCAGCTCCCTGCAAGACC...CCCATTGGTTGGTAAGGGGCCTGCAGGCATCTCTACCCTCTCTCTCCCCATCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR TCA 90 bp CCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCAAAGGTCAGGTTACAAGAGCACTGCCCCGATaGCACCGGTGGCCACAAGGT +
Preference number: 4 (lower is better)
Translates to: PMGEGPQAGRAYIKGQVTRALPR*HRWPQG
Trigger: ACCTTGTGGCCACCGGTGTCATCGGGGCAGTGCTCT...TGTAACCTGACCTTTGATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp TGGATGGGGAGAGAGAGGGTAGAGATGCCTGCAGGCCCCTTACCAACCAATGGGCAGGCCCCACAATGCTaGTCCCAAAGAGCAGCGTCA +
Preference number: 4 (lower is better)
Translates to: WMGRERVEMPAGPLPTNGQAPQC*SQRAAS
Trigger: TGACGCTGCTCTTTGGGACCAGCATTGTGGGGCCTG...CCCATTGGTTGGTAAGGGGCCTGCAGGCATCTCTACCCTCTCTCTCCCCATCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp ACCCCAACTTCCACCCCCAACACTGAGGCAGGACACACTTCAGAGAACAGGGTTCGGGTGTCAGTGGCATaGCCTGGTGGTACTGGGCCA +
Preference number: 4 (lower is better)
Translates to: TPTSTPNTEAGHTSENRVRVSVA*PGGTGP
Trigger: TGGCCCAGTACCACCAGGCCATGCCACTGACACCCG...AACCCTGTTCTCTGAAGTGTGTCCTGCCTCAGTGTTGGGGGTGGAAGTTGGGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp TGGGAATGGGTTCCTGAGTGGCCTGCCTTTGGGTCCTTTCCTACCCGCAGGGTCGTCTCTGTGGCCTGTTaGCTGTTGGAGGACAGTGAG +
Preference number: 4 (lower is better)
Translates to: WEWVPEWPAFGSFPTRRVVSVAC*LLEDSE
Trigger: CTCACTGTCCTCCAACAGCCAACAGGCCACAGAGAC...GACCCTGCGGGTAGGAAAGGACCCAAAGGCAGGCCACTCAGGAACCCATTCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR TCA 90 bp GGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCAAAGCTGTTGCCGTAAGTaGGGCAGGCAGTCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: GPLPTNGGGSSGWKGLHQSCCRK*GRQSGS
Trigger: ACTACCTGACTGCCTGCCTCACTTACGGCAACAGCT...TTGATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR GCA 90 bp GGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCAAGTGGCCACAAGGTCTTaGAGGGAGCTGGGATCTGTT +
Preference number: 4 (lower is better)
Translates to: GPLPTNGGGSSGWKGLHQVATRS*RELGSV
Trigger: AACAGATCCCAGCTCCCTGCAAGACCTTGTGGCCAC...TTGATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp GGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCAACCACATAGACGTACATaGAGGCCGAGGCACGCAGAA +
Preference number: 4 (lower is better)
Translates to: GPLPTNGGGSSGWKGLHQPHRRT*RPRHAE
Trigger: TTCTGCGTGCCTCGGCCTCCATGTACGTCTATGTGG...TTGATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR GCA 90 bp GGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCTTACATCAAGAAGGGCAGAAAGCATaGCCAGAAGAGAAGGACGAT +
Preference number: 4 (lower is better)
Translates to: GPLPTNGGGSSGWKGLHQEGQKA*PEEKDD
Trigger: ATCGTCCTTCTCTTCTGGGCATGCTTTCTGCCCTTC...TTGATGTAAGCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp AGAGAGAGGGTAGAGATGCCTGCAGGCCCCTTACCAACCAATGGGGGAGGGTCCGTCCAGGAACTGTTGTaGGACACATTAAAGCCACCA +
Preference number: 4 (lower is better)
Translates to: RERVEMPAGPLPTNGGGSVQELL*DTLKPP
Trigger: TGGTGGCTTTAATGTGTCCCACAACAGTTCCTGGAC...GGACCCTCCCCCATTGGTTGGTAAGGGGCCTGCAGGCATCTCTACCCTCTCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp CCCCTCAGAGACTGGTTTGAAGCAGGAATGTATTGGCATCATAGGAAAGGCTCTTGGCCTGTTGGCTGTTaGAGGACAGTGAGCGGCCCG +
Preference number: 4 (lower is better)
Translates to: PLRDWFEAGMYWHHRKGSWPVGC*RTVSGP
Trigger: CGGGCCGCTCACTGTCCTCCAACAGCCAACAGGCCA...AGAGCCTTTCCTATGATGCCAATACATTCCTGCTTCAAACCAGTCTCTGAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR TCA 90 bp ATGTGCATATGGGAGCAAGAAGCTACCGTGGAATGGATGGGGAGAGAGAGGGTAGCAGAAATCGGCACATaGCCACCAGAGTGTACACAT +
Preference number: 4 (lower is better)
Translates to: MCIWEQEATVEWMGRERVAEIGT*PPECTH
Trigger: ATGTGTACACTCTGGTGGTCATGTGCCGATTTCTGC...TACCCTCTCTCTCCCCATCCATTCCACGGTAGCTTCTTGCTCCCATATGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp TTTGAAGCAGGAATGTATTGGCATCATAGGAAAGGCTCTGATAGAGCTGATGAGGGAGGTGGACACGGCTaGACAGGAAGCTGCCAGCAC +
Preference number: 4 (lower is better)
Translates to: FEAGMYWHHRKGSDRADEGGGHG*TGSCQH
Trigger: GTGCTGGCAGCTTCCTGTCCAGCCGTGTCCACCTCC...CTCATCAGCTCTATCAGAGCCTTTCCTATGATGCCAATACATTCCTGCTTCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CCA 90 bp TTTGAAGCAGGAATGTATTGGCATCATAGGAAAGGCTCTGATAGAGCTGATGAGGAGTCCTGCTGGAGGTaGACACGGCTGGACAGGAAG +
Preference number: 4 (lower is better)
Translates to: FEAGMYWHHRKGSDRADEESCWR*TRLDRK
Trigger: CTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTC...CTCATCAGCTCTATCAGAGCCTTTCCTATGATGCCAATACATTCCTGCTTCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR TCA 90 bp ACAAGTGAGTTAGGTTTGAGTAGGGGATTCTGGGAATGGGTTCCTGAGTGGCCTTCATTATGGTCAGGGTaGAGATGCTGGCATGCATTG +
Preference number: 4 (lower is better)
Translates to: TSELGLSRGFWEWVPEWPSLWSG*RCWHAL
Trigger: CAATGCATGCCAGCATCTTCACCCTGACCATAATGA...AGGCCACTCAGGAACCCATTCCCAGAATCCCCTACTCAAACCTAACTCACTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
3UTR CAA 72 bp GGACTTTCCACAAGAAGACAGACAAGTGAGTTAGGTTaGAGTAGGGGATTCTGGGAATGGGTTCCTGAGTGG +
Preference number: 4 (lower is better)
Translates to: GLSTRRQTSELG*SRGFWEWVPEW
Trigger: CCACTCAGGAACCCATTCCCAGAATCCCCTACTCAAACCTAACTCACTTGTCTGTCTTCTTGTGGAAAGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR TCA 90 bp AAGCAGGAATGTATTGGCATCATAGGAAAGGCTCTGATAGAGCTGATGAGAACACACGGTAGTTCTTGGTaGGCAGAGTGTAGAGGAAGG +
Preference number: 4 (lower is better)
Translates to: KQECIGIIGKALIELMRTHGSSW*AECRGR
Trigger: CCTTCCTCTACACTCTGCTCACCAAGAACTACCGTG...TGTTCTCATCAGCTCTATCAGAGCCTTTCCTATGATGCCAATACATTCCTGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS GCA 90 bp AGCGGCCCGAGTCCTGCTGGAGGTGGACACGGCTGGACAGGAAGCTaGCAGCACTCCCTGGGCCACGGCAACTGCTACCCAGTGACCGCT +
Preference number: 5 (lower is better)
Translates to: SGPSPAGGGHGWTGS*QHSLGHGNCYPVTA
Trigger: AGCGGTCACTGGGTAGCAGTTGCCGTGGCCCAGGGAGTGCTGGCAGCTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 90 bp AAAGAGCAGCGTCAGGTAGGTACGGTGGGCACGAGGGCCCCAGGCTaGCAGGCAGAGGCTCTTAGAGCCCCTACGGACCAGCCGGATGGC +
Preference number: 5 (lower is better)
Translates to: KEQRQVGTVGTRAPG*QAEALRAPTDQPDG
Trigger: GCCATCCGGCTGGTCCGTAGGGGCTCTAAGAGCCTCTGCCTGCCAGCCTGGGGCCCTCGTGCCCACCGTACCTACCTGACGCTGCTCTTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 90 bp TGTTGGCTGTTGGAGGACAGTGAGCGGCCCGAGTCCTGCTGGAGGTaGACACGGCTGGACAGGAAGCTGCCAGCACTCCCTGGGCCACGG +
Preference number: 5 (lower is better)
Translates to: CWLLEDSERPESCWR*TRLDRKLPALPGPR
Trigger: CCGTGGCCCAGGGAGTGCTGGCAGCTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAACAGCCAACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 90 bp GTGGCCTGTTGGCTGTTGGAGGACAGTGAGCGGCCCGAGTCCTGCTaGAGGTGGACACGGCTGGACAGGAAGCTGCCAGCACTCCCTGGG +
Preference number: 5 (lower is better)
Translates to: VACWLLEDSERPESC*RWTRLDRKLPALPG
Trigger: CCCAGGGAGTGCTGGCAGCTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAACAGCCAACAGGCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS GCA 90 bp TCTGTGGCCTGTTGGCTGTTGGAGGACAGTGAGCGGCCCGAGTCCTaGTGGAGGTGGACACGGCTGGACAGGAAGCTGCCAGCACTCCCT +
Preference number: 5 (lower is better)
Translates to: SVACWLLEDSERPES*WRWTRLDRKLPALP
Trigger: AGGGAGTGCTGGCAGCTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAACAGCCAACAGGCCACAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS TCA 90 bp TGCCCACCACGCCCACCACACCCATGGTTGAGAGCACTGCCCCGATaGCACCGGTGGCCACAAGGTCTTGCAGGGAGCTGGGATCTGTTG +
Preference number: 5 (lower is better)
Translates to: CPPRPPHPWLRALPR*HRWPQGLAGSWDLL
Trigger: CAACAGATCCCAGCTCCCTGCAAGACCTTGTGGCCACCGGTGTCATCGGGGCAGTGCTCTCAACCATGGGTGTGGTGGGCGTGGTGGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS TCA 90 bp AGACAGCACGAGGGTCTCTGTGGCCTGTTGGCTGTTGGAGGACAGTaGGCGGCCCGAGTCCTGCTGGAGGTGGACACGGCTGGACAGGAA +
Preference number: 5 (lower is better)
Translates to: RQHEGLCGLLAVGGQ*AARVLLEVDTAGQE
Trigger: TTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAACAGCCAACAGGCCACAGAGACCCTCGTGCTGTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 90 bp GTGCCAGCAACCAGGTGCCCAGCGCCAACAGCTTACGGTAACCCTTaGAGCGCTGGACGGTGTCCAGGGGCCTCAGTACTGCTGCATAGC +
Preference number: 5 (lower is better)
Translates to: VPATRCPAPTAYGNP*SAGRCPGASVLLHS
Trigger: GCTATGCAGCAGTACTGAGGCCCCTGGACACCGTCCAGCGCTCCAAGGGTTACCGTAAGCTGTTGGCGCTGGGCACCTGGTTGCTGGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 90 bp CCATTAGGGGGAACTGGAGACAGCACGAGGGTCTCTGTGGCCTGTTaGCTGTTGGAGGACAGTGAGCGGCCCGAGTCCTGCTGGAGGTGG +
Preference number: 5 (lower is better)
Translates to: PLGGTGDSTRVSVAC*LLEDSERPESCWRW
Trigger: CCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAACAGCCAACAGGCCACAGAGACCCTCGTGCTGTCTCCAGTTCCCCCTAATGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CAA 90 bp ATGCCTGCAGGCCCCTTACCAACCAATGGGGGAGGGTCCTCAGGCTGGAAGGGCAGCCGCCGTGTCTGCTaGAAGGAAGCTTGCTGGGAT +
Preference number: 5 (lower is better)
Translates to: MPAGPLPTNGGGSSGWKGSRRVC*KEACWD
Trigger: ATCCCAGCAAGCTTCCTTCAAGCAGACACGGCGGCT...GCCCTTCCAGCCTGAGGACCCTCCCCCATTGGTTGGTAAGGGGCCTGCAGGCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS GCA 90 bp TGGCAAGCATCATGGGTAAGGTCAGCAGCAGTGCCAGCAACCAGGTaGCCAGCGCCAACAGCTTACGGTAACCCTTGGAGCGCTGGACGG +
Preference number: 5 (lower is better)
Translates to: WQASWVRSAAVPATR*PAPTAYGNPWSAGR
Trigger: CCGTCCAGCGCTCCAAGGGTTACCGTAAGCTGTTGGCGCTGGGCACCTGGTTGCTGGCACTGCTGCTGACCTTACCCATGATGCTTGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 90 bp ATGATGCGTGCAGTCTCGGGTGTCAGTGGCATGGCCTGGTGGTACTaGGCCAGCAGCTGCCATAGCCAGAAGGGCAGAAAGCATGCCCAG +
Preference number: 5 (lower is better)
Translates to: MMRAVSGVSGMAWWY*ASSCHSQKGRKHAQ
Trigger: CTGGGCATGCTTTCTGCCCTTCTGGCTATGGCAGCTGCTGGCCCAGTACCACCAGGCCATGCCACTGACACCCGAGACTGCACGCATCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 90 bp GATGACACCGGTGGCCACAAGGTCTTGCAGGGAGCTGGGATCTGTTaGGCCAGTCCAGGAACTGTTGTGGGACACATTAAAGCCACCAGG +
Preference number: 5 (lower is better)
Translates to: DDTGGHKVLQGAGIC*ASPGTVVGHIKATR
Trigger: CCTGGTGGCTTTAATGTGTCCCACAACAGTTCCTGGACTGGCCCAACAGATCCCAGCTCCCTGCAAGACCTTGTGGCCACCGGTGTCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 90 bp TCTTGCAGGGAGCTGGGATCTGTTGGGCCAGTCCAGGAACTGTTGTaGGACACATTAAAGCCACCAGGAAGCTCAGACGCAGTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: SCRELGSVGPVQELL*DTLKPPGSSDAVLL
Trigger: CAGAAGCACTGCGTCTGAGCTTCCTGGTGGCTTTAATGTGTCCCACAACAGTTCCTGGACTGGCCCAACAGATCCCAGCTCCCTGCAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CAA 90 bp AAGCAGGAATGTATTGGCATCATAGGAAAGGCTCTGATAGAGCTGATGAGAACAGGTGGCCACAAGGTCTaGCAGGGAGCTGGGATCTGT +
Preference number: 5 (lower is better)
Translates to: KQECIGIIGKALIELMRTGGHKV*QGAGIC
Trigger: ACAGATCCCAGCTCCCTGCAAGACCTTGTGGCCACC...TGTTCTCATCAGCTCTATCAGAGCCTTTCCTATGATGCCAATACATTCCTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS-3UTR CAA 90 bp TTTGAAGCAGGAATGTATTGGCATCATAGGAAAGGCTCTGATAGAGCTGATGAGCCAGTCCAGGAACTGTaGTGGGACACATTAAAGCCA +
Preference number: 5 (lower is better)
Translates to: FEAGMYWHHRKGSDRADEPVQEL*WDTLKP
Trigger: TGGCTTTAATGTGTCCCACAACAGTTCCTGGACTGG...CTCATCAGCTCTATCAGAGCCTTTCCTATGATGCCAATACATTCCTGCTTCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp GTGAGCGGCCCGAGTCCTGCTGGAGGTGGACACGGCTaGACAGGAAGCTGCCAGCACTCCCTGGGCCACGGC +
Preference number: 6 (lower is better)
Translates to: VSGPSPAGGGHG*TGSCQHSLGHG
Trigger: GCCGTGGCCCAGGGAGTGCTGGCAGCTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS TCA 72 bp CGCCCACCACACCCATGGTTGAGAGCACTGCCCCGATaGCACCGGTGGCCACAAGGTCTTGCAGGGAGCTGG +
Preference number: 6 (lower is better)
Translates to: RPPHPWLRALPR*HRWPQGLAGSW
Trigger: CCAGCTCCCTGCAAGACCTTGTGGCCACCGGTGTCATCGGGGCAGTGCTCTCAACCATGGGTGTGGTGGGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS TCA 72 bp GAGGGTCTCTGTGGCCTGTTGGCTGTTGGAGGACAGTaGGCGGCCCGAGTCCTGCTGGAGGTGGACACGGCT +
Preference number: 6 (lower is better)
Translates to: EGLCGLLAVGGQ*AARVLLEVDTA
Trigger: AGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAACAGCCAACAGGCCACAGAGACCCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp TTGGAGGACAGTGAGCGGCCCGAGTCCTGCTGGAGGTaGACACGGCTGGACAGGAAGCTGCCAGCACTCCCT +
Preference number: 6 (lower is better)
Translates to: LEDSERPESCWR*TRLDRKLPALP
Trigger: AGGGAGTGCTGGCAGCTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp TGGCTGTTGGAGGACAGTGAGCGGCCCGAGTCCTGCTaGAGGTGGACACGGCTGGACAGGAAGCTGCCAGCA +
Preference number: 6 (lower is better)
Translates to: WLLEDSERPESC*RWTRLDRKLPA
Trigger: TGCTGGCAGCTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAACAGCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS GCA 72 bp TGTTGGCTGTTGGAGGACAGTGAGCGGCCCGAGTCCTaGTGGAGGTGGACACGGCTGGACAGGAAGCTGCCA +
Preference number: 6 (lower is better)
Translates to: CWLLEDSERPES*WRWTRLDRKLP
Trigger: TGGCAGCTTCCTGTCCAGCCGTGTCCACCTCCAGCAGGACTCGGGCCGCTCACTGTCCTCCAACAGCCAACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp ACCAGGTGCCCAGCGCCAACAGCTTACGGTAACCCTTaGAGCGCTGGACGGTGTCCAGGGGCCTCAGTACTG +
Preference number: 6 (lower is better)
Translates to: TRCPAPTAYGNP*SAGRCPGASVL
Trigger: CAGTACTGAGGCCCCTGGACACCGTCCAGCGCTCCAAGGGTTACCGTAAGCTGTTGGCGCTGGGCACCTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp ATGCGTGCAGTCTCGGGTGTCAGTGGCATGGCCTGGTaGTACTGGGCCAGCAGCTGCCATAGCCAGAAGGGC +
Preference number: 6 (lower is better)
Translates to: MRAVSGVSGMAW*YWASSCHSQKG
Trigger: GCCCTTCTGGCTATGGCAGCTGCTGGCCCAGTACCACCAGGCCATGCCACTGACACCCGAGACTGCACGCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS TCA 72 bp AGAGAACCCTGGGGTTGGGCAGCCGCCGTGTCTGCTTaGAGGAAGCTTGCTGGGATAGCCAATAGGCCCTGG +
Preference number: 6 (lower is better)
Translates to: REPWGWAAAVSA*RKLAGIANRPW
Trigger: CCAGGGCCTATTGGCTATCCCAGCAAGCTTCCTTCAAGCAGACACGGCGGCTGCCCAACCCCAGGGTTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp ATGATGCGTGCAGTCTCGGGTGTCAGTGGCATGGCCTaGTGGTACTGGGCCAGCAGCTGCCATAGCCAGAAG +
Preference number: 6 (lower is better)
Translates to: MMRAVSGVSGMA*WYWASSCHSQK
Trigger: CTTCTGGCTATGGCAGCTGCTGGCCCAGTACCACCAGGCCATGCCACTGACACCCGAGACTGCACGCATCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp CAGGTAGTTGATGATGCGTGCAGTCTCGGGTGTCAGTaGCATGGCCTGGTGGTACTGGGCCAGCAGCTGCCA +
Preference number: 6 (lower is better)
Translates to: QVVDDACSLGCQ*HGLVVLGQQLP
Trigger: TGGCAGCTGCTGGCCCAGTACCACCAGGCCATGCCACTGACACCCGAGACTGCACGCATCATCAACTACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS TCA 72 bp CGTACATGGAGGCCGAGGCACGCAGAAATCGGCACATaGCCACCAGAGTGTACACATTGCCCACCACGCCCA +
Preference number: 6 (lower is better)
Translates to: RTWRPRHAEIGT*PPECTHCPPRP
Trigger: TGGGCGTGGTGGGCAATGTGTACACTCTGGTGGTCATGTGCCGATTTCTGCGTGCCTCGGCCTCCATGTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS TCA 72 bp GAAAGCATGCCCAGAAGAGAAGGACGATACCAAGGATaGGGTAGAGAACCCTGGGGTTGGGCAGCCGCCGTG +
Preference number: 6 (lower is better)
Translates to: ESMPRREGRYQG*GREPWGWAAAV
Trigger: CACGGCGGCTGCCCAACCCCAGGGTTCTCTACCTCATCCTTGGTATCGTCCTTCTCTTCTGGGCATGCTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS GCA 72 bp CTTGGAGCGCTGGACGGTGTCCAGGGGCCTCAGTACTaGTGCATAGCGTTCACTGCTCATTATGGTCAGGGT +
Preference number: 6 (lower is better)
Translates to: LGALDGVQGPQY*CIAFTAHYGQG
Trigger: ACCCTGACCATAATGAGCAGTGAACGCTATGCAGCAGTACTGAGGCCCCTGGACACCGTCCAGCGCTCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CAA 90 bp AGGTCTTGCAGGGAGCTGGGATCTGTTGGGCCAGTCCAGGAACTGTaGTGGGACACATTAAAGCCACCAGGAAGCTCAGACGCAGTGCTT +
Preference number: 6 (lower is better)
Translates to: RSCRELGSVGPVQEL*WDTLKPPGSSDAVL
Trigger: AAGCACTGCGTCTGAGCTTCCTGGTGGCTTTAATGTGTCCCACAACAGTTCCTGGACTGGCCCAACAGATCCCAGCTCCCTGCAAGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp GAGCTGGGATCTGTTGGGCCAGTCCAGGAACTGTTGTaGGACACATTAAAGCCACCAGGAAGCTCAGACGCA +
Preference number: 6 (lower is better)
Translates to: ELGSVGPVQELL*DTLKPPGSSDA
Trigger: TGCGTCTGAGCTTCCTGGTGGCTTTAATGTGTCCCACAACAGTTCCTGGACTGGCCCAACAGATCCCAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2
CDS CCA 72 bp GGTGGCCACAAGGTCTTGCAGGGAGCTGGGATCTGTTaGGCCAGTCCAGGAACTGTTGTGGGACACATTAAA +
Preference number: 6 (lower is better)
Translates to: GGHKVLQGAGIC*ASPGTVVGHIK
Trigger: TTTAATGTGTCCCACAACAGTTCCTGGACTGGCCCAACAGATCCCAGCTCCCTGCAAGACCTTGTGGCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039044.2