Pregenerated sensors for UTS2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056423Ensembl transcript IDs: ENSMUST00000070531.8
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AGCATACAACAGCTCAATCCCCCAAGTTTTATCACTAAAGCCATTTaGATGACAGTTCCATTCCAGAGTGCAGCCAGTGCAATTGTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: SIQQLNPPSFITKAI*MTVPFQSAASAIVH Trigger: GTGAACAATTGCACTGGCTGCACTCTGGAATGGAACTGTCATCAAAATGGCTTTAGTGATAAAACTTGGGGGATTGAGCTGTTGTATGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS-3UTR TCA 90 bp | CATTTTGATGACAGTTCCATTCCAGAGTGCAGCCAGTGCAATTGTTCACTGAATAAACAACTCATGTCCTaGGCTCAGATGTGGCCGTCC | + |
|
Preference number: 4 (lower is better) Translates to: HFDDSSIPECSQCNCSLNKQLMS*AQMWPS Trigger: GGACGGCCACATCTGAGCTCAGGACATGAGTTGTTT...ATTCAGTGAACAATTGCACTGGCTGCACTCTGGAATGGAACTGTCATCAAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS-3UTR CCA 90 bp | AGTTTTATCACTAAAGCCATTTTGATGACAGTTCCATTCCAGAGTGCAGCCAGTAGATCTCCACCAGCGTaGAAGGGCCTCTGTAAACCA | + |
|
Preference number: 4 (lower is better) Translates to: SFITKAILMTVPFQSAASRSPPA*KGLCKP Trigger: TGGTTTACAGAGGCCCTTCCACGCTGGTGGAGATCT...ACTGGCTGCACTCTGGAATGGAACTGTCATCAAAATGGCTTTAGTGATAAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| 3UTR CAA 72 bp | CAGCTCAATCCCCCAAGTTTTATCACTAAAGCCATTTaGATGACAGTTCCATTCCAGAGTGCAGCCAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: QLNPPSFITKAI*MTVPFQSAASA Trigger: TGCACTGGCTGCACTCTGGAATGGAACTGTCATCAAAATGGCTTTAGTGATAAAACTTGGGGGATTGAGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS-3UTR GCA 90 bp | CATTTTGATGACAGTTCCATTCCAGAGTGCAGCCAGTGCAATTGTTCACTGAATCAGCCCAGTGTTCTTTaGTTCCATAATCCAGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: HFDDSSIPECSQCNCSLNQPSVL*FHNPVS Trigger: AGAGACTGGATTATGGAAGCAAAGAACACTGGGCTG...ATTCAGTGAACAATTGCACTGGCTGCACTCTGGAATGGAACTGTCATCAAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS-3UTR CCA 90 bp | AGCCATTTTGATGACAGTTCCATTCCAGAGTGCAGCCAGTGCAATTGTTCACTGAATTGTCTAAAGCATTaGACAGCCCAGTGTTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: SHFDDSSIPECSQCNCSLNCLKH*TAQCSL Trigger: CAAAGAACACTGGGCTGTCCAATGCTTTAGACAATT...CAGTGAACAATTGCACTGGCTGCACTCTGGAATGGAACTGTCATCAAAATGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS-3UTR TCA 90 bp | CATTTTGATGACAGTTCCATTCCAGAGTGCAGCCAGTGCAATTGTTCACTGAATGTCCACGCACAGATTTaGAAAGGTTCATTACAGACA | + |
|
Preference number: 4 (lower is better) Translates to: HFDDSSIPECSQCNCSLNVHAQI*KGSLQT Trigger: TGTCTGTAATGAACCTTTTCAAATCTGTGCGTGGAC...ATTCAGTGAACAATTGCACTGGCTGCACTCTGGAATGGAACTGTCATCAAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS-3UTR GCA 90 bp | AGTTTTATCACTAAAGCCATTTTGATGACAGTTCCATTCCAGAGTGCAGCCAGTCAACTTCTCTTGAGCTaGATGTTCTTTAGCTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SFITKAILMTVPFQSAASQLLLS*MFFSWK Trigger: TTTCCAGCTAAAGAACATGCAGCTCAAGAGAAGTTG...ACTGGCTGCACTCTGGAATGGAACTGTCATCAAAATGGCTTTAGTGATAAAACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS-3UTR CAA 90 bp | GAGCAGGTTCACAAAGTGAGAAAAATGATGTGCAGAACAAGGGCCAGTTTCTTATCGGGTCAACTTCTCTaGAGCTGCATGTTCTTTAGC | + |
|
Preference number: 5 (lower is better) Translates to: EQVHKVRKMMCRTRASFLSGQLL*SCMFFS Trigger: GCTAAAGAACATGCAGCTCAAGAGAAGTTGACCCGA...TAAGAAACTGGCCCTTGTTCTGCACATCATTTTTCTCACTTTGTGAACCTGCTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS-3UTR CAA 90 bp | AGAAAAATGATGTGCAGAACAAGGGCCAGTTTCTTAGAGCTTGAAACAGAAGTACTAAGTTCTTCCAGTTaGCTGGGAAGATCTCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: RKMMCRTRASFLELETEVLSSSS*LGRSPP Trigger: TGGTGGAGATCTTCCCAGCAAACTGGAAGAACTTAG...TACTTCTGTTTCAAGCTCTAAGAAACTGGCCCTTGTTCTGCACATCATTTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS TCA 72 bp | GTCCTGAGCTCAGATGTGGCCGTCCACGCACAGATTTaGAAAGGTTCATTACAGACAACAAAGTCAGGAGTC | + |
|
Preference number: 6 (lower is better) Translates to: VLSSDVAVHAQI*KGSLQTTKSGV Trigger: GACTCCTGACTTTGTTGTCTGTAATGAACCTTTTCAAATCTGTGCGTGGACGGCCACATCTGAGCTCAGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS TCA 72 bp | AGCTGCATGTTCTTTAGCTGGAAACAACTCATGTCCTaGGCTCAGATGTGGCCGTCCACGCACAGATTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: SCMFFSWKQLMS*AQMWPSTHRFE Trigger: TTCAAATCTGTGCGTGGACGGCCACATCTGAGCTCAGGACATGAGTTGTTTCCAGCTAAAGAACATGCAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||
| CDS CAA 90 bp | ATAATCCAGTCTCTCAACTTCTTTACCTGTCTAAGTTCTTCCAGTTaGCTGGGAAGATCTCCACCAGCGTGGAAGGGCCTCTGTAAACCA | + |
|
Preference number: 6 (lower is better) Translates to: IIQSLNFFTCLSSSS*LGRSPPAWKGLCKP Trigger: TGGTTTACAGAGGCCCTTCCACGCTGGTGGAGATCTTCCCAGCAAACTGGAAGAACTTAGACAGGTAAAGAAGTTGAGAGACTGGATTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070531.8 |
||