Pregenerated sensors for UTS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028963Ensembl transcript IDs: ENSMUST00000030803.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAGAGGATTTATTTCTCATAATGAAGAACAAGGCGTCGTTAGCGTaGTTTTGCTTCAAGCATCTGCTCTGCCCGTTTCCTGAAGCAATG | + |
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Preference number: 1 (lower is better) Translates to: IEDLFLIMKNKASLA*FCFKHLLCPFPEAM Trigger: CATTGCTTCAGGAAACGGGCAGAGCAGATGCTTGAAGCAAAATCACGCTAACGACGCCTTGTTCTTCATTATGAGAAATAAATCCTCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| 3UTR TCA 72 bp | TTATTTCTCATAATGAAGAACAAGGCGTCGTTAGCGTaGTTTTGCTTCAAGCATCTGCTCTGCCCGTTTCCT | + |
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Preference number: 3 (lower is better) Translates to: LFLIMKNKASLA*FCFKHLLCPFP Trigger: AGGAAACGGGCAGAGCAGATGCTTGAAGCAAAATCACGCTAACGACGCCTTGTTCTTCATTATGAGAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS-3UTR TCA 90 bp | AAGCATCTGCTCTGCCCGTTTCCTGAAGCAATGGTTCTGAGAGACCAACGGGCGGATTCAGAAGTCCTATaGAGAGCAGGCAGCAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: KHLLCPFPEAMVLRDQRADSEVL*RAGSRR Trigger: CCTTCTGCTGCCTGCTCTTCATAGGACTTCTGAATC...CGCCCGTTGGTCTCTCAGAACCATTGCTTCAGGAAACGGGCAGAGCAGATGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS-3UTR GCA 90 bp | TCTCATAATGAAGAACAAGGCGTCGTTAGCGTGATTTTGCTTCAAGCATCTGCTCTCAGTGCTGGGACCTaGTTCTCCAGGGCTCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: SHNEEQGVVSVILLQASALSAGT*FSRALP Trigger: GGGGAGAGCCCTGGAGAAGCAGGTCCCAGCACTGAG...AGCAGATGCTTGAAGCAAAATCACGCTAACGACGCCTTGTTCTTCATTATGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS-3UTR CCA 90 bp | TTTTGCTTCAAGCATCTGCTCTGCCCGTTTCCTGAAGCAATGGTTCTGAGAGACGCTTATGTTGTTTCCTaGTTCTTGCCAAGAGACGAC | + |
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Preference number: 4 (lower is better) Translates to: FCFKHLLCPFPEAMVLRDAYVVS*FLPRDD Trigger: GTCGTCTCTTGGCAAGAACCAGGAAACAACATAAGC...GTCTCTCAGAACCATTGCTTCAGGAAACGGGCAGAGCAGATGCTTGAAGCAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS-3UTR TCA 90 bp | ATTTCTCATAATGAAGAACAAGGCGTCGTTAGCGTGATTTTGCTTCAAGCATCTTCAAGCACTGGAAGCTaGAGAGTCCTCTCACCAGTG | + |
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Preference number: 4 (lower is better) Translates to: ISHNEEQGVVSVILLQASSSTGS*RVLSPV Trigger: CACTGGTGAGAGGACTCTTCAGCTTCCAGTGCTTGA...AGATGCTTGAAGCAAAATCACGCTAACGACGCCTTGTTCTTCATTATGAGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS-3UTR GCA 90 bp | AAACATAGAGGATTTATTTCTCATAATGAAGAACAAGGCGTCGTTAGCGTGATTGAGTGGGAGTCTCAGTaGTGGGACCTGCTTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: KHRGFISHNEEQGVVSVIEWESQ*WDLLLQ Trigger: CTGGAGAAGCAGGTCCCAGCACTGAGACTCCCACTC...AATCACGCTAACGACGCCTTGTTCTTCATTATGAGAAATAAATCCTCTATGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS-3UTR GCA 90 bp | ATTTCTCATAATGAAGAACAAGGCGTCGTTAGCGTGATTTTGCTTCAAGCATCTTTGTTTCCTGGTTCTTaGCAAGAGACGACTCAGTAC | + |
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Preference number: 4 (lower is better) Translates to: ISHNEEQGVVSVILLQASLFPGS*QETTQY Trigger: GTACTGAGTCGTCTCTTGGCAAGAACCAGGAAACAA...AGATGCTTGAAGCAAAATCACGCTAACGACGCCTTGTTCTTCATTATGAGAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS TCA 90 bp | GGACCTGCTTCTCCAGGGCTCTCCCCTGCTTCCGTGCCCATGGTCTaGCGCAGGGTCTGCAGGAGGGCCATCCTCTCCAGCTCCTCCAGA | + |
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Preference number: 5 (lower is better) Translates to: GPASPGLSPASVPMV*RRVCRRAILSSSSR Trigger: TCTGGAGGAGCTGGAGAGGATGGCCCTCCTGCAGACCCTGCGTCAGACCATGGGCACGGAAGCAGGGGAGAGCCCTGGAGAAGCAGGTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CCA 90 bp | TGCTGGGACCTGCTTCTCCAGGGCTCTCCCCTGCTTCCGTGCCCATaGTCTGACGCAGGGTCTGCAGGAGGGCCATCCTCTCCAGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: CWDLLLQGSPLLPCP*SDAGSAGGPSSPAP Trigger: AGGAGCTGGAGAGGATGGCCCTCCTGCAGACCCTGCGTCAGACCATGGGCACGGAAGCAGGGGAGAGCCCTGGAGAAGCAGGTCCCAGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS GCA 90 bp | CTTCCTCATGCTTCCCCGTGGAGTGGGAGTCTCAGTGCTGGGACCTaGTTCTCCAGGGCTCTCCCCTGCTTCCGTGCCCATGGTCTGACG | + |
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Preference number: 5 (lower is better) Translates to: LPHASPWSGSLSAGT*FSRALPCFRAHGLT Trigger: CGTCAGACCATGGGCACGGAAGCAGGGGAGAGCCCTGGAGAAGCAGGTCCCAGCACTGAGACTCCCACTCCACGGGGAAGCATGAGGAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CCA 90 bp | AGTGTTAGAATTTTGCCCAGCGAAAGCCTTCCTCATGCTTCCCCGTaGAGTGGGAGTCTCAGTGCTGGGACCTGCTTCTCCAGGGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: SVRILPSESLPHASP*SGSLSAGTCFSRAL Trigger: GAGAGCCCTGGAGAAGCAGGTCCCAGCACTGAGACTCCCACTCCACGGGGAAGCATGAGGAAGGCTTTCGCTGGGCAAAATTCTAACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS-3UTR CAA 90 bp | AAGCATCTGCTCTGCCCGTTTCCTGAAGCAATGGTTCTGAGAGACCAACGGGCGCCCGTGTTGCTTATGTaGTTTCCTGGTTCTTGCCAA | + |
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Preference number: 5 (lower is better) Translates to: KHLLCPFPEAMVLRDQRAPVLLM*FPGSCQ Trigger: TTGGCAAGAACCAGGAAACAACATAAGCAACACGGG...CGCCCGTTGGTCTCTCAGAACCATTGCTTCAGGAAACGGGCAGAGCAGATGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS GCA 72 bp | TGGGACCTGCTTCTCCAGGGCTCTCCCCTGCTTCCGTaGCCATGGTCTGACGCAGGGTCTGCAGGAGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: WDLLLQGSPLLP*PWSDAGSAGGP Trigger: TGGCCCTCCTGCAGACCCTGCGTCAGACCATGGGCACGGAAGCAGGGGAGAGCCCTGGAGAAGCAGGTCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS GCA 72 bp | GCTTCCCCGTGGAGTGGGAGTCTCAGTGCTGGGACCTaGTTCTCCAGGGCTCTCCCCTGCTTCCGTGCCCAT | + |
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Preference number: 6 (lower is better) Translates to: ASPWSGSLSAGT*FSRALPCFRAH Trigger: ATGGGCACGGAAGCAGGGGAGAGCCCTGGAGAAGCAGGTCCCAGCACTGAGACTCCCACTCCACGGGGAAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CCA 72 bp | CTGCTTCTCCAGGGCTCTCCCCTGCTTCCGTGCCCATaGTCTGACGCAGGGTCTGCAGGAGGGCCATCCTCT | + |
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Preference number: 6 (lower is better) Translates to: LLLQGSPLLPCP*SDAGSAGGPSS Trigger: AGAGGATGGCCCTCCTGCAGACCCTGCGTCAGACCATGGGCACGGAAGCAGGGGAGAGCCCTGGAGAAGCAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CCA 72 bp | TCCTCATGCTTCCCCGTGGAGTGGGAGTCTCAGTGCTaGGACCTGCTTCTCCAGGGCTCTCCCCTGCTTCCG | + |
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Preference number: 6 (lower is better) Translates to: SSCFPVEWESQC*DLLLQGSPLLP Trigger: CGGAAGCAGGGGAGAGCCCTGGAGAAGCAGGTCCCAGCACTGAGACTCCCACTCCACGGGGAAGCATGAGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CCA 72 bp | GCCCAGCGAAAGCCTTCCTCATGCTTCCCCGTGGAGTaGGAGTCTCAGTGCTGGGACCTGCTTCTCCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: AQRKPSSCFPVE*ESQCWDLLLQG Trigger: GCCCTGGAGAAGCAGGTCCCAGCACTGAGACTCCCACTCCACGGGGAAGCATGAGGAAGGCTTTCGCTGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CCA 72 bp | CTCCTCCAGAGCCCGAAGAGCGTCTTCCTCAAGCACTaGAAGCTGAAGAGTCCTCTCACCAGTGTCCGTGAC | + |
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Preference number: 6 (lower is better) Translates to: LLQSPKSVFLKH*KLKSPLTSVRD Trigger: GTCACGGACACTGGTGAGAGGACTCTTCAGCTTCCAGTGCTTGAGGAAGACGCTCTTCGGGCTCTGGAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CCA 72 bp | CCTCTCACCAGTGTCCGTGACGGGAAGGGACAGCAGTaGATTCAGAAGTCCTATGAAGAGCAGGCAGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: PLTSVRDGKGQQ*IQKSYEEQAAE Trigger: TTCTGCTGCCTGCTCTTCATAGGACTTCTGAATCCACTGCTGTCCCTTCCCGTCACGGACACTGGTGAGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CAA 72 bp | GCAGTATTTCCAGAAGCACTCTGGGGCAGCCCCGTGTaGCTTATGTTGTTTCCTGGTTCTTGCCAAGAGACG | + |
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Preference number: 6 (lower is better) Translates to: AVFPEALWGSPV*LMLFPGSCQET Trigger: CGTCTCTTGGCAAGAACCAGGAAACAACATAAGCAACACGGGGCTGCCCCAGAGTGCTTCTGGAAATACTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS GCA 72 bp | CAGTATTTCCAGAAGCACTCTGGGGCAGCCCCGTGTTaGTTATGTTGTTTCCTGGTTCTTGCCAAGAGACGA | + |
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Preference number: 6 (lower is better) Translates to: QYFQKHSGAAPC*LCCFLVLAKRR Trigger: TCGTCTCTTGGCAAGAACCAGGAAACAACATAAGCAACACGGGGCTGCCCCAGAGTGCTTCTGGAAATACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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| CDS CAA 90 bp | GCAGTATTTCCAGAAGCACTCTGGGGCAGCCCCGTGTTGCTTATGTaGTTTCCTGGTTCTTGCCAAGAGACGACTCAGTACAGTGTTAGA | + |
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Preference number: 6 (lower is better) Translates to: AVFPEALWGSPVLLM*FPGSCQETTQYSVR Trigger: TCTAACACTGTACTGAGTCGTCTCTTGGCAAGAACCAGGAAACAACATAAGCAACACGGGGCTGCCCCAGAGTGCTTCTGGAAATACTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030803.2 |
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