RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UTP14B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079470

Ensembl transcript IDs: ENSMUST00000053760.12, ENSMUST00000151622.2

Found 206 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCCAGTGTCAGGCCCCCACCTCATCCCAGCCGCTTTGGCCCAGCATaGTCCACGTTCCCCCTACCTCCCTGCTACTATCCATCCTTCTCC +
Preference number: 1 (lower is better)
Translates to: PSVRPPPHPSRFGPA*STFPLPPCYYPSFS
Trigger: GGAGAAGGATGGATAGTAGCAGGGAGGTAGGGGGAACGTGGAGCATGCTGGGCCAAAGCGGCTGGGATGAGGTGGGGGCCTGACACTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp CCCAGCCGCTTTGGCCCAGCATGCTCCACGTTCCCCCTACCTCCCTaGTACTATCCATCCTTCTCCTCCTGGACTTGCCCAACACCACTT +
Preference number: 1 (lower is better)
Translates to: PSRFGPACSTFPLPP*YYPSFSSWTCPTPL
Trigger: AAGTGGTGTTGGGCAAGTCCAGGAGGAGAAGGATGGATAGTAGCAGGGAGGTAGGGGGAACGTGGAGCATGCTGGGCCAAAGCGGCTGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 90 bp CCCTTGGAATGTCCAGGACTGCTGGACACCAAGGGGAAGGAAGGATaGAGCAGAGCTGAATTCCACAGTATGCCAGGCAGGGAAGGATGG +
Preference number: 1 (lower is better)
Translates to: PLECPGLLDTKGKEG*SRAEFHSMPGREGW
Trigger: CCATCCTTCCCTGCCTGGCATACTGTGGAATTCAGCTCTGCTCCATCCTTCCTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp GACCCTTCCTGGCCTTTAACTTTCAGCTATCCTTCTGCCTCTGCCTaGTCCCAAGTGCTGGGACTGCAGGGATGCCTGCCATTCATACCT +
Preference number: 1 (lower is better)
Translates to: DPSWPLTFSYPSASA*SQVLGLQGCLPFIP
Trigger: AGGTATGAATGGCAGGCATCCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGGATAGCTGAAAGTTAAAGGCCAGGAAGGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 90 bp GGATGGAGCAGAGCTGAATTCCACAGTATGCCAGGCAGGGAAGGATaGGCTGAAGCGAGGTCTGCGGTCCCATTCTTCTTTACACACCAG +
Preference number: 1 (lower is better)
Translates to: GWSRAEFHSMPGREG*AEARSAVPFFFTHQ
Trigger: CTGGTGTGTAAAGAAGAATGGGACCGCAGACCTCGCTTCAGCCCATCCTTCCCTGCCTGGCATACTGTGGAATTCAGCTCTGCTCCATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 90 bp CTGGGGAGGCAGAATAGAGTTCAAAGCCGATCCAGCCTGCCAGCCTaGCCTATCAAGGTCAAGGCCAGTCTAAGATGCACAAGCAAGACC +
Preference number: 1 (lower is better)
Translates to: LGRQNRVQSRSSLPA*PIKVKASLRCTSKT
Trigger: GGTCTTGCTTGTGCATCTTAGACTGGCCTTGACCTTGATAGGCCAGGCTGGCAGGCTGGATCGGCTTTGAACTCTATTCTGCCTCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp TGTAGACCCTTCCTGGCCTTTAACTTTCAGCTATCCTTCTGCCTCTaGCTGCTCCCAAGTGCTGGGACTGCAGGGATGCCTGCCATTCAT +
Preference number: 1 (lower is better)
Translates to: CRPFLAFNFQLSFCL*LLPSAGTAGMPAIH
Trigger: ATGAATGGCAGGCATCCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGGATAGCTGAAAGTTAAAGGCCAGGAAGGGTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp GAATTATGTAGACCCTTCCTGGCCTTTAACTTTCAGCTATCCTTCTaGCTCTGCCTGCTCCCAAGTGCTGGGACTGCAGGGATGCCTGCC +
Preference number: 1 (lower is better)
Translates to: ELCRPFLAFNFQLSF*LCLLPSAGTAGMPA
Trigger: GGCAGGCATCCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGGATAGCTGAAAGTTAAAGGCCAGGAAGGGTCTACATAATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 90 bp CTGCGGTCCCATTCTTCTTTACACACCAGGCAGGAATGGATGAAGTaGAGTTCAGAACTGGTGGGTCAGCAGGATCCAGGTCTGGCAGTG +
Preference number: 1 (lower is better)
Translates to: LRSHSSLHTRQEWMK*SSELVGQQDPGLAV
Trigger: CACTGCCAGACCTGGATCCTGCTGACCCACCAGTTCTGAACTTCACTTCATCCATTCCTGCCTGGTGTGTAAAGAAGAATGGGACCGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 90 bp GAGGTCTGCGGTCCCATTCTTCTTTACACACCAGGCAGGAATGGATaGAGTGAAGTTCAGAACTGGTGGGTCAGCAGGATCCAGGTCTGG +
Preference number: 1 (lower is better)
Translates to: EVCGPILLYTPGRNG*SEVQNWWVSRIQVW
Trigger: CCAGACCTGGATCCTGCTGACCCACCAGTTCTGAACTTCACTTCATCCATTCCTGCCTGGTGTGTAAAGAAGAATGGGACCGCAGACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp TTTGTGCTTCCGTTATTCTGCGTCTTCCCTTGGAATGTCCAGGACTaGTGGACACCAAGGGGAAGGAAGGATGGAGCAGAGCTGAATTCC +
Preference number: 1 (lower is better)
Translates to: FVLPLFCVFPWNVQD*WTPRGRKDGAELNS
Trigger: GGAATTCAGCTCTGCTCCATCCTTCCTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCAAGGGAAGACGCAGAATAACGGAAGCACAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 90 bp CCCAGATTCTGTCACTTTGTGCTTCCGTTATTCTGCGTCTTCCCTTaGAATGTCCAGGACTGCTGGACACCAAGGGGAAGGAAGGATGGA +
Preference number: 1 (lower is better)
Translates to: PRFCHFVLPLFCVFP*NVQDCWTPRGRKDG
Trigger: TCCATCCTTCCTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCAAGGGAAGACGCAGAATAACGGAAGCACAAAGTGACAGAATCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 90 bp CTGGTGTCTTATACTTTAGGTCCAGTTTTATCTAAGAGTCTCCACTaGGTACTCACCTCTGGGCCTTGTGTACTGTCCCCAGTGTCAGGC +
Preference number: 1 (lower is better)
Translates to: LVSYTLGPVLSKSLH*VLTSGPCVLSPVSG
Trigger: GCCTGACACTGGGGACAGTACACAAGGCCCAGAGGTGAGTACTCAGTGGAGACTCTTAGATAAAACTGGACCTAAAGTATAAGACACCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp GTATCCAATAAAATCCCTTTCCTCTCTTATTCTCTACAGCACTCTTaGCAGGTGATGACTTCCTGTCATCCAGCCCTCCTGCCCATGCTC +
Preference number: 1 (lower is better)
Translates to: VSNKIPFLSYSLQHS*QVMTSCHPALLPML
Trigger: GAGCATGGGCAGGAGGGCTGGATGACAGGAAGTCATCACCTGGCAAGAGTGCTGTAGAGAATAAGAGAGGAAAGGGATTTTATTGGATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 90 bp TCCACGTTCCCCCTACCTCCCTGCTACTATCCATCCTTCTCCTCCTaGACTTGCCCAACACCACTTAAATTTTTCCACCCTTACAACATT +
Preference number: 1 (lower is better)
Translates to: STFPLPPCYYPSFSS*TCPTPLKFFHPYNI
Trigger: AATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGGGCAAGTCCAGGAGGAGAAGGATGGATAGTAGCAGGGAGGTAGGGGGAACGTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp CTTTCAGCTATCCTTCTGCCTCTGCCTGCTCCCAAGTGCTGGGACTaGAGGGATGCCTGCCATTCATACCTTTACATTTCAAAAATATAC +
Preference number: 1 (lower is better)
Translates to: LSAILLPLPAPKCWD*RDACHSYLYISKIY
Trigger: GTATATTTTTGAAATGTAAAGGTATGAATGGCAGGCATCCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGGATAGCTGAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp TTCCCCCTACCTCCCTGCTACTATCCATCCTTCTCCTCCTGGACTTaGCCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGT +
Preference number: 1 (lower is better)
Translates to: FPLPPCYYPSFSSWT*PTPLKFFHPYNILC
Trigger: ACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGGGCAAGTCCAGGAGGAGAAGGATGGATAGTAGCAGGGAGGTAGGGGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 90 bp CTGTCATCCAGCCCTCCTGCCCATGCTCACTCTAACTTCTACAGCTaGCATTTTCAACTCTTACCCCCATTAATACAATACATCCTACAT +
Preference number: 1 (lower is better)
Translates to: LSSSPPAHAHSNFYS*HFQLLPPLIQYILH
Trigger: ATGTAGGATGTATTGTATTAATGGGGGTAAGAGTTGAAAATGTCAGCTGTAGAAGTTAGAGTGAGCATGGGCAGGAGGGCTGGATGACAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp CTTCTGCCTCTGCCTGCTCCCAAGTGCTGGGACTGCAGGGATGCCTaGCATTCATACCTTTACATTTCAAAAATATACAAGAATTTTCTA +
Preference number: 1 (lower is better)
Translates to: LLPLPAPKCWDCRDA*HSYLYISKIYKNFL
Trigger: TAGAAAATTCTTGTATATTTTTGAAATGTAAAGGTATGAATGGCAGGCATCCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp TATCCTTCTGCCTCTGCCTGCTCCCAAGTGCTGGGACTGCAGGGATaGCTGCCATTCATACCTTTACATTTCAAAAATATACAAGAATTT +
Preference number: 1 (lower is better)
Translates to: YPSASACSQVLGLQG*LPFIPLHFKNIQEF
Trigger: AAATTCTTGTATATTTTTGAAATGTAAAGGTATGAATGGCAGGCATCCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp TTTCAACTCTTACCCCCATTAATACAATACATCCTACATGCATGCTaGCAGCTTGGCACTCACTCCTTTAACACAAATGTCACAATGGTC +
Preference number: 1 (lower is better)
Translates to: FQLLPPLIQYILHAC*QLGTHSFNTNVTMV
Trigger: GACCATTGTGACATTTGTGTTAAAGGAGTGAGTGCCAAGCTGGCAGCATGCATGTAGGATGTATTGTATTAATGGGGGTAAGAGTTGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 90 bp CATTTTCAACTCTTACCCCCATTAATACAATACATCCTACATGCATaGTGCCAGCTTGGCACTCACTCCTTTAACACAAATGTCACAATG +
Preference number: 1 (lower is better)
Translates to: HFQLLPPLIQYILHA*CQLGTHSFNTNVTM
Trigger: CATTGTGACATTTGTGTTAAAGGAGTGAGTGCCAAGCTGGCAGCATGCATGTAGGATGTATTGTATTAATGGGGGTAAGAGTTGAAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 90 bp ACAGTAGTCAATGAGACAGCTTGTGCACATATACTTTATTCAGGGTaGAGCAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAG +
Preference number: 1 (lower is better)
Translates to: TVVNETACAHILYSG*SKGYIDILILESGK
Trigger: CTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTGCTCCACCCTGAATAAAGTATATGTGCACAAGCTGTCTCATTGACTACTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR GCA 90 bp GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGCCAGGGGTTCTGGGACCTTCTGCCTCTGCCTaGTCCCAAGTGCTGGGACTG +
Preference number: 2 (lower is better)
Translates to: EGGREGGREGGSEPGVLGPSASA*SQVLGL
Trigger: CAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGG...TCCCAGAACCCCTGGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CCA 90 bp GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGCCAGGGGTTCTGGGAAAGGGGAAGGAAGGATaGAGCAGAGCTGAATTCCAC +
Preference number: 2 (lower is better)
Translates to: EGGREGGREGGSEPGVLGKGKEG*SRAEFH
Trigger: GTGGAATTCAGCTCTGCTCCATCCTTCCTTCCCCTT...TCCCAGAACCCCTGGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR GCA 90 bp GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGCCAGGGGTTCTGGGAAAGGCCAGTCTAAGATaGACAAGCAAGACCCTGTCT +
Preference number: 2 (lower is better)
Translates to: EGGREGGREGGSEPGVLGKASLR*TSKTLS
Trigger: AGACAGGGTCTTGCTTGTGCATCTTAGACTGGCCTT...TCCCAGAACCCCTGGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CCA 90 bp GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGCCAGGGGTTCTGGGAAGTTCAAGGCCAACCTaGTCTACAAAGTTCCAGGAC +
Preference number: 2 (lower is better)
Translates to: EGGREGGREGGSEPGVLGSSRPT*STKFQD
Trigger: GTCCTGGAACTTTGTAGACCAGGTTGGCCTTGAACT...TCCCAGAACCCCTGGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR TCA 90 bp TTAAGAGGTAGAGAGGCAAGTCAATCTGTGAGCTCCAGGCCAGGACACCCAGGTCCAGCAGGCAGGCACTaGAGAACACACACACAAAGG +
Preference number: 2 (lower is better)
Translates to: LRGREASQSVSSRPGHPGPAGRH*RTHTQR
Trigger: CCTTTGTGTGTGTGTTCTTCAGTGCCTGCCTGCTGG...ACCTGGGTGTCCTGGCCTGGAGCTCACAGATTGACTTGCCTCTCTACCTCTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR GCA 90 bp TTAAGAGGTAGAGAGGCAAGTCAATCTGTGAGCTCCAGGCCAGGACACCCAGGTTGGAATGTCCAGGACTaGTGGACACCAAGGGGAAGG +
Preference number: 2 (lower is better)
Translates to: LRGREASQSVSSRPGHPGWNVQD*WTPRGR
Trigger: CCTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCA...ACCTGGGTGTCCTGGCCTGGAGCTCACAGATTGACTTGCCTCTCTACCTCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CAA 90 bp GCCCAGATTCTGTCACTTTGTGCTTCCGTTATTCTGCGTCTTCCCTaGGAATGTCCAGGACTGCTGGACACCAAGGGGAAGGAAGGATGG +
Preference number: 2 (lower is better)
Translates to: AQILSLCASVILRLP*ECPGLLDTKGKEGW
Trigger: CCATCCTTCCTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCAAGGGAAGACGCAGAATAACGGAAGCACAAAGTGACAGAATCTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR GCA 90 bp TTAAGAGGTAGAGAGGCAAGTCAATCTGTGAGCTCCAGGCCAGGACACCCAGGTTTTCAGCTATCCTTCTaGCTCTGCCTGCTCCCAAGT +
Preference number: 2 (lower is better)
Translates to: LRGREASQSVSSRPGHPGFQLSF*LCLLPS
Trigger: ACTTGGGAGCAGGCAGAGGCAGAAGGATAGCTGAAA...ACCTGGGTGTCCTGGCCTGGAGCTCACAGATTGACTTGCCTCTCTACCTCTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR TCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGTGCCCAGTCCCAGGCTaGACTTCTCTGTCCACACAT +
Preference number: 2 (lower is better)
Translates to: EPILILWPQLTDSQPRRTCPVPG*TSLSTH
Trigger: ATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCA...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
3UTR-3UTR TCA 90 bp TTAAGAGGTAGAGAGGCAAGTCAATCTGTGAGCTCCAGGCCAGGACACCCAGGTCAGGAATGGATGAAGTaGAGTTCAGAACTGGTGGGT +
Preference number: 2 (lower is better)
Translates to: LRGREASQSVSSRPGHPGQEWMK*SSELVG
Trigger: ACCCACCAGTTCTGAACTTCACTTCATCCATTCCTG...ACCTGGGTGTCCTGGCCTGGAGCTCACAGATTGACTTGCCTCTCTACCTCTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CCA 90 bp TTAAGAGGTAGAGAGGCAAGTCAATCTGTGAGCTCCAGGCCAGGACACCCAGGTATTGATCCTGGAGAGTaGGAAGGGGTTCTTCTTAAG +
Preference number: 2 (lower is better)
Translates to: LRGREASQSVSSRPGHPGIDPGE*EGVLLK
Trigger: CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAAT...ACCTGGGTGTCCTGGCCTGGAGCTCACAGATTGACTTGCCTCTCTACCTCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCCCAGGCAGGGAAGGATaGGCTGAAGCGAGGTCTGCG +
Preference number: 2 (lower is better)
Translates to: PTPLKFFHPYNILCFALAPGREG*AEARSA
Trigger: CGCAGACCTCGCTTCAGCCCATCCTTCCCTGCCTGG...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR TCA 90 bp TTGTTTGTTTTTGAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGTGCCCAGTCCCAGGCTaGACTTCTCTGTCCACACAT +
Preference number: 2 (lower is better)
Translates to: LFVFEPILILWPQLTDSQCPVPG*TSLSTH
Trigger: ATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCA...CTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTCAAAAACAAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
3UTR-3UTR GCA 90 bp GGTCCCAAGGATTCACAGATGGATTCTCTGGCAATCACATTCTTGATAAAAGTCCCAGGTCCAAAACCCTaGTCAAACTTCCAGGTATCC +
Preference number: 2 (lower is better)
Translates to: GPKDSQMDSLAITFLIKVPGPKP*SNFQVS
Trigger: GGATACCTGGAAGTTTGAGCAGGGTTTTGGACCTGG...GACTTTTATCAAGAATGTGATTGCCAGAGAATCCATCTGTGAATCCTTGGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR GCA 90 bp AGGGGGATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATATTCCCCCTACCTCCCTaGTACTATCCATCCTTCTCC +
Preference number: 2 (lower is better)
Translates to: RGMKQKNSYQLKYSLVYIFPLPP*YYPSFS
Trigger: GGAGAAGGATGGATAGTAGCAGGGAGGTAGGGGGAA...TATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCATCCCCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCACCCCATGGGTGGTCTaGTCCCAAGGATTCACAGAT +
Preference number: 2 (lower is better)
Translates to: PTPLKFFHPYNILCFALATPWVV*SQGFTD
Trigger: ATCTGTGAATCCTTGGGACCAGACCACCCATGGGGT...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR GCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCCTGGGACTGCAGGGATaGCTGCCATTCATACCTTTA +
Preference number: 2 (lower is better)
Translates to: PTPLKFFHPYNILCFALALGLQG*LPFIPL
Trigger: TAAAGGTATGAATGGCAGGCATCCCTGCAGTCCCAG...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR TCA 90 bp ATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGTAAGTTCTGGCAGTGAATGCTaGGGGAAGGGGGTCTCTGAA +
Preference number: 2 (lower is better)
Translates to: MKQKNSYQLKYSLVYIVSSGSEC*GKGVSE
Trigger: TTCAGAGACCCCCTTCCCTCAGCATTCACTGCCAGA...ACTTACTATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR GCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGGGGAGTCCTCCATTTTaGACCAGGAAATCTCAGGAA +
Preference number: 2 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKGSPPF*TRKSQE
Trigger: TTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCC...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
3UTR-3UTR GCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCGTGCTTCCGTTATTCTaGGTCTTCCCTTGGAATGTC +
Preference number: 2 (lower is better)
Translates to: PTPLKFFHPYNILCFALAVLPLF*VFPWNV
Trigger: GACATTCCAAGGGAAGACGCAGAATAACGGAAGCAC...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CAA 90 bp GTATACATAGTAAGTTTAGACAAGCCAGGACTACACAGTGGGTCCTaGCTTAAAACAATAAGCATACAACTTAAACCAGGCATGGTGGCA +
Preference number: 2 (lower is better)
Translates to: VYIVSLDKPGLHSGS*LKTISIQLKPGMVA
Trigger: TGCCACCATGCCTGGTTTAAGTTGTATGCTTATTGTTTTAAGCAAGGACCCACTGTGTAGTCCTGGCTTGTCTAAACTTACTATGTATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR TCA 90 bp GGTCCCAAGGATTCACAGATGGATTCTCTGGCAATCACATTCTTGATAAAAGTCGACATTCCAGGAAATTaGACTTGTAACTTCCTCCAA +
Preference number: 2 (lower is better)
Translates to: GPKDSQMDSLAITFLIKVDIPGN*TCNFLQ
Trigger: TTGGAGGAAGTTACAAGTTCAATTTCCTGGAATGTC...GACTTTTATCAAGAATGTGATTGCCAGAGAATCCATCTGTGAATCCTTGGGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR TCA 90 bp ATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGTAAGTTTTAATCCCAGCACTTaGGAGGTAGAGGCAGGCAGA +
Preference number: 2 (lower is better)
Translates to: MKQKNSYQLKYSLVYIVSFNPST*EVEAGR
Trigger: TCTGCCTGCCTCTACCTCTCAAGTGCTGGGATTAAA...ACTTACTATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR TCA 90 bp ATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGTAAGTCCTCCAAGGATTACATaGCATTCCCTAGGTAGACTG +
Preference number: 2 (lower is better)
Translates to: MKQKNSYQLKYSLVYIVSPPRIT*HSLGRL
Trigger: CAGTCTACCTAGGGAATGTCATGTAATCCTTGGAGG...ACTTACTATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCAAAAAGTTTGATGTGTaGATCCCTAGAACAATTCCT +
Preference number: 2 (lower is better)
Translates to: PTPLKFFHPYNILCFALAKKFDV*IPRTIP
Trigger: AGGAATTGTTCTAGGGATCCACACATCAAACTTTTT...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CCA 90 bp ATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGTAAGTCTCAGGAAAGCTATCTaGGAATGGCAAACTATAACA +
Preference number: 2 (lower is better)
Translates to: MKQKNSYQLKYSLVYIVSLRKAI*EWQTIT
Trigger: TGTTATAGTTTGCCATTCCCAGATAGCTTTCCTGAG...ACTTACTATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp AGGCCCCCACCTCATCCCAGCCGCTTTGGCCCAGCATaGTCCACGTTCCCCCTACCTCCCTGCTACTATCCA +
Preference number: 3 (lower is better)
Translates to: RPPPHPSRFGPA*STFPLPPCYYP
Trigger: TGGATAGTAGCAGGGAGGTAGGGGGAACGTGGAGCATGCTGGGCCAAAGCGGCTGGGATGAGGTGGGGGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CAA 90 bp GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGCCAGGGGTTCTGGGAAACTTTACCACTCCCTaGATCCACCATCCAGCCATC +
Preference number: 3 (lower is better)
Translates to: EGGREGGREGGSEPGVLGNFTTP*IHHPAI
Trigger: GATGGCTGGATGGTGGATCAAGGGAGTGGTAAAGTT...TCCCAGAACCCCTGGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CAA 90 bp GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGCCAGGGGTTCTGGGATCGTCTCTATCTTCATaGTCTGTCTTCTCCAAGTCA +
Preference number: 3 (lower is better)
Translates to: EGGREGGREGGSEPGVLGSSLSS*SVFSKS
Trigger: TGACTTGGAGAAGACAGACAATGAAGATAGAGACGA...TCCCAGAACCCCTGGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp TTTGGCCCAGCATGCTCCACGTTCCCCCTACCTCCCTaGTACTATCCATCCTTCTCCTCCTGGACTTGCCCA +
Preference number: 3 (lower is better)
Translates to: FGPACSTFPLPP*YYPSFSSWTCP
Trigger: TGGGCAAGTCCAGGAGGAGAAGGATGGATAGTAGCAGGGAGGTAGGGGGAACGTGGAGCATGCTGGGCCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 72 bp TTTTGCTGCCCACGCTTCCTCTGCCCAGTCCCAGGCTaGACTTCTCTGTCCACACATCCCTCTCTAAGCCCA +
Preference number: 3 (lower is better)
Translates to: FCCPRFLCPVPG*TSLSTHPSLSP
Trigger: TGGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGGAAGCGTGGGCAGCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
3UTR GCA 72 bp AGACCCTTCCTGGCCTTTAACTTTCAGCTATCCTTCTaGCTCTGCCTGCTCCCAAGTGCTGGGACTGCAGGG +
Preference number: 3 (lower is better)
Translates to: RPFLAFNFQLSF*LCLLPSAGTAG
Trigger: CCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGGATAGCTGAAAGTTAAAGGCCAGGAAGGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp CCGTTATTCTGCGTCTTCCCTTGGAATGTCCAGGACTaGTGGACACCAAGGGGAAGGAAGGATGGAGCAGAG +
Preference number: 3 (lower is better)
Translates to: PLFCVFPWNVQD*WTPRGRKDGAE
Trigger: CTCTGCTCCATCCTTCCTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCAAGGGAAGACGCAGAATAACGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp TTCCTGGCCTTTAACTTTCAGCTATCCTTCTGCCTCTaGCTGCTCCCAAGTGCTGGGACTGCAGGGATGCCT +
Preference number: 3 (lower is better)
Translates to: FLAFNFQLSFCL*LLPSAGTAGMP
Trigger: AGGCATCCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGGATAGCTGAAAGTTAAAGGCCAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp AGAGCTGAATTCCACAGTATGCCAGGCAGGGAAGGATaGGCTGAAGCGAGGTCTGCGGTCCCATTCTTCTTT +
Preference number: 3 (lower is better)
Translates to: RAEFHSMPGREG*AEARSAVPFFF
Trigger: AAAGAAGAATGGGACCGCAGACCTCGCTTCAGCCCATCCTTCCCTGCCTGGCATACTGTGGAATTCAGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp TTATTCTGCGTCTTCCCTTGGAATGTCCAGGACTGCTaGACACCAAGGGGAAGGAAGGATGGAGCAGAGCTG +
Preference number: 3 (lower is better)
Translates to: LFCVFPWNVQDC*TPRGRKDGAEL
Trigger: CAGCTCTGCTCCATCCTTCCTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCAAGGGAAGACGCAGAATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp ATCCTTCTGCCTCTGCCTGCTCCCAAGTGCTGGGACTaGAGGGATGCCTGCCATTCATACCTTTACATTTCA +
Preference number: 3 (lower is better)
Translates to: ILLPLPAPKCWD*RDACHSYLYIS
Trigger: TGAAATGTAAAGGTATGAATGGCAGGCATCCCTGCAGTCCCAGCACTTGGGAGCAGGCAGAGGCAGAAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp TGTCACTTTGTGCTTCCGTTATTCTGCGTCTTCCCTTaGAATGTCCAGGACTGCTGGACACCAAGGGGAAGG +
Preference number: 3 (lower is better)
Translates to: CHFVLPLFCVFP*NVQDCWTPRGR
Trigger: CCTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCAAGGGAAGACGCAGAATAACGGAAGCACAAAGTGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp CAGAATAGAGTTCAAAGCCGATCCAGCCTGCCAGCCTaGCCTATCAAGGTCAAGGCCAGTCTAAGATGCACA +
Preference number: 3 (lower is better)
Translates to: QNRVQSRSSLPA*PIKVKASLRCT
Trigger: TGTGCATCTTAGACTGGCCTTGACCTTGATAGGCCAGGCTGGCAGGCTGGATCGGCTTTGAACTCTATTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp CCTGAGATACCGCTGGTCAGTTGTCCCAGCACAATCTaGAAGTTCCCTAGTTTTCCCATCCCAGTTCATAGC +
Preference number: 3 (lower is better)
Translates to: PEIPLVSCPSTI*KFPSFPIPVHS
Trigger: GCTATGAACTGGGATGGGAAAACTAGGGAACTTGCAGATTGTGCTGGGACAACTGACCAGCGGTATCTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 72 bp GGTCCCATTCTTCTTTACACACCAGGCAGGAATGGATaGAGTGAAGTTCAGAACTGGTGGGTCAGCAGGATC +
Preference number: 3 (lower is better)
Translates to: GPILLYTPGRNG*SEVQNWWVSRI
Trigger: GATCCTGCTGACCCACCAGTTCTGAACTTCACTTCATCCATTCCTGCCTGGTGTGTAAAGAAGAATGGGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp CCTCCTCCTCTGAACTGGAATTATGTAGACCCTTCCTaGCCTTTAACTTTCAGCTATCCTTCTGCCTCTGCC +
Preference number: 3 (lower is better)
Translates to: PPPLNWNYVDPS*PLTFSYPSASA
Trigger: GGCAGAGGCAGAAGGATAGCTGAAAGTTAAAGGCCAGGAAGGGTCTACATAATTCCAGTTCAGAGGAGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp GCCATCACCTACCTCAAGAGCCCTCCTCCTCTGAACTaGAATTATGTAGACCCTTCCTGGCCTTTAACTTTC +
Preference number: 3 (lower is better)
Translates to: AITYLKSPPPLN*NYVDPSWPLTF
Trigger: GAAAGTTAAAGGCCAGGAAGGGTCTACATAATTCCAGTTCAGAGGAGGAGGGCTCTTGAGGTAGGTGATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 72 bp GATCCCATATTCAAGAAGTCAACTTTACCACTCCCTTaGTCCACCATCCAGCCATCACCTACCTCAAGAGCC +
Preference number: 3 (lower is better)
Translates to: DPIFKKSTLPLP*STIQPSPTSRA
Trigger: GGCTCTTGAGGTAGGTGATGGCTGGATGGTGGATCAAGGGAGTGGTAAAGTTGACTTCTTGAATATGGGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp CATTACTCAATCCCTAATGGCCATCATCACAGAACCTaGTCAAACATACATCAGGTAGGTGGGTGGGTGGGT +
Preference number: 3 (lower is better)
Translates to: HYSIPNGHHHRT*SNIHQVGGWVG
Trigger: ACCCACCCACCCACCTACCTGATGTATGTTTGACCAGGTTCTGTGATGATGGCCATTAGGGATTGAGTAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR-3UTR CAA 90 bp TTAAGAGGTAGAGAGGCAAGTCAATCTGTGAGCTCCAGGCCAGGACACCCAGGTTTTGAGATTGTGAATTaGAAGACAGTCTGGAGAACT +
Preference number: 3 (lower is better)
Translates to: LRGREASQSVSSRPGHPGFEIVN*KTVWRT
Trigger: AGTTCTCCAGACTGTCTTCAAATTCACAATCTCAAA...ACCTGGGTGTCCTGGCCTGGAGCTCACAGATTGACTTGCCTCTCTACCTCTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp AGAGGAAACCCACTAAGGAAAGGGAGTCCTCCATTTTaGACCAGGAAATCTCAGGAAAGCTATCTGGGAATG +
Preference number: 3 (lower is better)
Translates to: RGNPLRKGSPPF*TRKSQESYLGM
Trigger: CATTCCCAGATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGGGTTTCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
3UTR CCA 72 bp GATTTGAGACCAAAACAAACTGACCTGAGATACCGCTaGTCAGTTGTCCCAGCACAATCTGCAAGTTCCCTA +
Preference number: 3 (lower is better)
Translates to: DLRPKQTDLRYR*SVVPAQSASSL
Trigger: TAGGGAACTTGCAGATTGTGCTGGGACAACTGACCAGCGGTATCTCAGGTCAGTTTGTTTTGGTCTCAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 72 bp TATACTTTAGGTCCAGTTTTATCTAAGAGTCTCCACTaGGTACTCACCTCTGGGCCTTGTGTACTGTCCCCA +
Preference number: 3 (lower is better)
Translates to: YTLGPVLSKSLH*VLTSGPCVLSP
Trigger: TGGGGACAGTACACAAGGCCCAGAGGTGAGTACTCAGTGGAGACTCTTAGATAAAACTGGACCTAAAGTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR TCA 72 bp AGCCCTCCTGCCCATGCTCACTCTAACTTCTACAGCTaGCATTTTCAACTCTTACCCCCATTAATACAATAC +
Preference number: 3 (lower is better)
Translates to: SPPAHAHSNFYS*HFQLLPPLIQY
Trigger: GTATTGTATTAATGGGGGTAAGAGTTGAAAATGTCAGCTGTAGAAGTTAGAGTGAGCATGGGCAGGAGGGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp AACTTATTTTTCAGTAGCCCAGATTCTGTCACTTTGTaGTTCCGTTATTCTGCGTCTTCCCTTGGAATGTCC +
Preference number: 3 (lower is better)
Translates to: NLFFSSPDSVTL*FRYSASSLGMS
Trigger: GGACATTCCAAGGGAAGACGCAGAATAACGGAAGCACAAAGTGACAGAATCTGGGCTACTGAAAAATAAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp TTACCCCCATTAATACAATACATCCTACATGCATGCTaGCAGCTTGGCACTCACTCCTTTAACACAAATGTC +
Preference number: 3 (lower is better)
Translates to: LPPLIQYILHAC*QLGTHSFNTNV
Trigger: GACATTTGTGTTAAAGGAGTGAGTGCCAAGCTGGCAGCATGCATGTAGGATGTATTGTATTAATGGGGGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR GCA 72 bp CTCTTACCCCCATTAATACAATACATCCTACATGCATaGTGCCAGCTTGGCACTCACTCCTTTAACACAAAT +
Preference number: 3 (lower is better)
Translates to: LLPPLIQYILHA*CQLGTHSFNTN
Trigger: ATTTGTGTTAAAGGAGTGAGTGCCAAGCTGGCAGCATGCATGTAGGATGTATTGTATTAATGGGGGTAAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp CTTCAAGATTATAAGTTCAAGGACTACCTGAACAAATaGCGATTTCTAGCCTGGCCTGGACAACTTAAAAAG +
Preference number: 3 (lower is better)
Translates to: LQDYKFKDYLNK*RFLAWPGQLKK
Trigger: CTTTTTAAGTTGTCCAGGCCAGGCTAGAAATCGCCATTTGTTCAGGTAGTCCTTGAACTTATAATCTTGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp AATGAGACAGCTTGTGCACATATACTTTATTCAGGGTaGAGCAAAGGCTATATAGATATATTGATCCTGGAG +
Preference number: 3 (lower is better)
Translates to: NETACAHILYSG*SKGYIDILILE
Trigger: CTCCAGGATCAATATATCTATATAGCCTTTGCTCCACCCTGAATAAAGTATATGTGCACAAGCTGTCTCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CCA 72 bp TTCAAGGACTACCTGAACAAATGGCGATTTCTAGCCTaGCCTGGACAACTTAAAAAGACATTGTCTTTAAAA +
Preference number: 3 (lower is better)
Translates to: FKDYLNKWRFLA*PGQLKKTLSLK
Trigger: TTTTAAAGACAATGTCTTTTTAAGTTGTCCAGGCCAGGCTAGAAATCGCCATTTGTTCAGGTAGTCCTTGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR TCA 90 bp GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGCCAGGGGTTCTGGGATTCTACCAAGGGAACTaGCTGCTTCCAGAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: EGGREGGREGGSEPGVLGFYQGN*LLPEVF
Trigger: AAAAACTTCTGGAAGCAGTCAGTTCCCTTGGTAGAA...TCCCAGAACCCCTGGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR TCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCAGAGCTCGCGTCCTCTaGAGCTCTGCTCGGCGTATC +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPRARVL*SSARRI
Trigger: GATACGCCGAGCAGAGCTTCAGAGGACGCGAGCTCT...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGACTGCTGCTGGTGGGTaGATGGGTGTGGAAGCGCCC +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTTAAGG*MGVEAP
Trigger: GGGCGCTTCCACACCCATTCACCCACCAGCAGCAGT...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCATGGGAAAAATCAACTaGTCTGCCTGCCGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPMGKIN*SACRFF
Trigger: GAAGAACCGGCAGGCAGAGCAGTTGATTTTTCCCAT...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCATCAGGGTTGGTGAGTaGCTTCATCTCCTTCCAATC +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPIRVGE*LHLLPI
Trigger: GATTGGAAGGAGATGAAGCCACTCACCAACCCTGAT...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCATGGGCTTAATGATATaGCCTAGCTTGGTGCCAACC +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPMGLMI*PSLVPT
Trigger: GGTTGGCACCAAGCTAGGCCATATCATTAAGCCCAT...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGAGAGCTCGCGTCCTCTaGAGCTCTGCTCGGCGTATC +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTRARVL*SSARRI
Trigger: GATACGCCGAGCAGAGCTTCAGAGGACGCGAGCTCT...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATACTGCTGCTGGTGGGTaGATGGGTGTGGAAGCGCCC +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYTAAGG*MGVEAP
Trigger: GGGCGCTTCCACACCCATTCACCCACCAGCAGCAGT...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCACCAAGGGAACTGACTaGTTCCAGAAGTTTTTGACG +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPTKGTD*FQKFLT
Trigger: CGTCAAAAACTTCTGGAAGCAGTCAGTTCCCTTGGT...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp TTAAGAGGTAGAGAGGCAAGTCAATCTGTGAGCTCCAGGCCAGGACACCCAGGTAACATGTTCAATGGGTaGAACCGCTGGCGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: LRGREASQSVSSRPGHPGNMFNG*NRWRLL
Trigger: AAGGAGCCGCCAGCGGTTGCACCCATTGAACATGTT...ACCTGGGTGTCCTGGCCTGGAGCTCACAGATTGACTTGCCTCTCTACCTCTTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCGTTTTTGCTGTTTTCTaGAGAGGCACTTCTGACTGC +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPVFAVF*RGTSDC
Trigger: GCAGTCAGAAGTGCCTCTCCAGAAAACAGCAAAAAC...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
3UTR CAA 72 bp CTGTCACTTTGTGCTTCCGTTATTCTGCGTCTTCCCTaGGAATGTCCAGGACTGCTGGACACCAAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: LSLCASVILRLP*ECPGLLDTKGK
Trigger: CTTCCCCTTGGTGTCCAGCAGTCCTGGACATTCCAAGGGAAGACGCAGAATAACGGAAGCACAAAGTGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR TCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCGCTTCCAGAAGTTTTTaGCGTTTTCCTTCTCCATCA +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPASRSF*RFPSPS
Trigger: TGATGGAGAAGGAAAACGTCAAAAACTTCTGGAAGC...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCGAGTCTTCTGTTTCTTaGCCATCCATTAGCTTAGCA +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPESSVS*PSISLA
Trigger: TGCTAAGCTAATGGATGGCCAAGAAACAGAAGACTC...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGCTGCTCGGCGTATCTTaGCTTCTTCCAGGCTCATGG +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTLLGVS*LLPGSW
Trigger: CCATGAGCCTGGAAGAAGCCAAGATACGCCGAGCAG...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TTAAGAGGTAGAGAGGCAAGTCAATCTGTGAGCTCCAGGCCAGGACACCCAGGTTTGCAATGCAGCATTTaGGCAGTCTTTCCACAGCTC +
Preference number: 4 (lower is better)
Translates to: LRGREASQSVSSRPGHPGLQCSI*AVFPQL
Trigger: GAGCTGTGGAAAGACTGCCCAAATGCTGCATTGCAA...ACCTGGGTGTCCTGGCCTGGAGCTCACAGATTGACTTGCCTCTCTACCTCTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CCA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCTCCTCTCTCTGGATATaGAGAACATTTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPSSLWI*RTFSSE
Trigger: TTCAGAGGAAAATGTTCTCCATATCCAGAGAGAGGA...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGTTCCCACTGCCCTGGTaGTTAAGGCTCATCCGTTCT +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTFPLPW*LRLIRS
Trigger: AGAACGGATGAGCCTTAAGCACCAGGGCAGTGGGAA...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATCTGCTCGGCGTATCTTaGCTTCTTCCAGGCTCATGG +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYLLGVS*LLPGSW
Trigger: CCATGAGCCTGGAAGAAGCCAAGATACGCCGAGCAG...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGTCAAACTGCTGCTGGTaGGTGAATGGGTGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTSNCCW*VNGCGS
Trigger: GCTTCCACACCCATTCACCCACCAGCAGCAGTTTGA...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGCTATTCCCTCTTCTGTaGATCCGTCCTCTTCCTCAC +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTLFPLL*IRPLPH
Trigger: GTGAGGAAGAGGACGGATGCACAGAAGAGGGAATAG...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATCCACCGGATCCCACCTaGAGAGCATTTGTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYPPDPT*RAFVRF
Trigger: AAACCTCACAAATGCTCTCCAGGTGGGATCCGGTGG...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGAATGGGTGCAACCGCTaGCGGCTCCTTCTCCATGGG +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRNGCNR*RLLLHG
Trigger: CCCATGGAGAAGGAGCCGCCAGCGGTTGCACCCATT...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGGTGGGTGAATGGGTGTaGAAGCGCCCGCACCTGATG +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRVGEWV*KRPHLM
Trigger: CATCAGGTGCGGGCGCTTCCACACCCATTCACCCAC...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGGTGGGTGAATGGGTGTaGAAGCGCCCGCACCTGATG +
Preference number: 4 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKVGEWV*KRPHLM
Trigger: CATCAGGTGCGGGCGCTTCCACACCCATTCACCCAC...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp ACAATGTGGCTTAAGTACACAGTGTTTGTCAATTTAGGAAATGACCCTGAAGCACTGCTGGTGGGTGAATaGGTGTGGAAGCGCCCGCAC +
Preference number: 4 (lower is better)
Translates to: TMWLKYTVFVNLGNDPEALLVGE*VWKRPH
Trigger: GTGCGGGCGCTTCCACACCCATTCACCCACCAGCAG...TGCTTCAGGGTCATTTCCTAAATTGACAAACACTGTGTACTTAAGCCACATTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGATGGGAAAAATCAACTaGTCTGCCTGCCGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTMGKIN*SACRFF
Trigger: GAAGAACCGGCAGGCAGAGCAGTTGATTTTTCCCAT...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATCTATTCCCTCTTCTGTaGATCCGTCCTCTTCCTCAC +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYLFPLL*IRPLPH
Trigger: GTGAGGAAGAGGACGGATGCACAGAAGAGGGAATAG...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGAGGCATCAGGGTTGGTaGGTGGCTTCATCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKRHQGW*VASSPS
Trigger: GGAAGGAGATGAAGCCACTCACCAACCCTGATGCCT...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGAGGCATCAGGGTTGGTaGGTGGCTTCATCTCCTTCC +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRRHQGW*VASSPS
Trigger: GGAAGGAGATGAAGCCACTCACCAACCCTGATGCCT...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGGGTTTTGCTGAATGCTaGTTCCCTGAGGGCTCGGTC +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRGFAEC*FPEGSV
Trigger: GACCGAGCCCTCAGGGAAGCAGCATTCAGCAAAACC...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATAGGTCATCCATTCCATaGGAGACAGAGACTATTCCC +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYRSSIP*ETETIP
Trigger: GGGAATAGTCTCTGTCTCCCATGGAATGGATGACCT...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGGCAAGGTCCTCTCTCTaGATATGGAGAACATTTTCC +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTARSSL*IWRTFS
Trigger: GGAAAATGTTCTCCATATCCAGAGAGAGGACCTTGC...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
3UTR CAA 72 bp TCGATTAACTTACTATCTAAACTAACTGAGCATTTTTaGCTGCCCACGCTTCCTCTGCCCAGTCCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: SINLLSKLTEHF*LPTLPLPSPRL
Trigger: CAGCCTGGGACTGGGCAGAGGAAGCGTGGGCAGCAAAAAATGCTCAGTTAGTTTAGATAGTAAGTTAATCGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp TTACCCCCATTAATACAATACATCCTACATGCATGCTGCCAGCTTGGCACTCACACCAAGGGAACTGACTaGTTCCAGAAGTTTTTGACG +
Preference number: 4 (lower is better)
Translates to: LPPLIQYILHACCQLGTHTKGTD*FQKFLT
Trigger: CGTCAAAAACTTCTGGAAGCAGTCAGTTCCCTTGGT...GTGAGTGCCAAGCTGGCAGCATGCATGTAGGATGTATTGTATTAATGGGGGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR GCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGATCAACTGCTCTGCCTaGCGGTTCTTCAGAACCACC +
Preference number: 4 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKINCSA*RFFRTT
Trigger: GGTGGTTCTGAAGAACCGGCAGGCAGAGCAGTTGAT...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATAAAAATCAACTGCTCTaGCTGCCGGTTCTTCAGAAC +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYKNQLL*LPVLQN
Trigger: GTTCTGAAGAACCGGCAGGCAGAGCAGTTGATTTTT...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGAACATGTTCAATGGGTaGAACCGCTGGCGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKNMFNG*NRWRLL
Trigger: AAGGAGCCGCCAGCGGTTGCACCCATTGAACATGTT...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TGTGCACATATACTTTATTCAGGGTGGAGCAAAGGCTATATAGATATATTGATCAATGGGTGCAACCGCTaGCGGCTCCTTCTCCATGGG +
Preference number: 4 (lower is better)
Translates to: CAHILYSGWSKGYIDILINGCNR*RLLLHG
Trigger: CCCATGGAGAAGGAGCCGCCAGCGGTTGCACCCATT...GATCAATATATCTATATAGCCTTTGCTCCACCCTGAATAAAGTATATGTGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CAA 72 bp AAGAGGAAACCCACTAAGGAAAGGGAGTCCTCCATTTaGCACCAGGAAATCTCAGGAAAGCTATCTGGGAAT +
Preference number: 4 (lower is better)
Translates to: KRKPTKERESSI*HQEISGKLSGN
Trigger: ATTCCCAGATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGGGTTTCCTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp GTTTTTGAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAGACCAGCTTTTCACCTaGTCCTTCAGAAGTGACATT +
Preference number: 4 (lower is better)
Translates to: VFEPILILWPQLTDSQPRDQLFT*SFRSDI
Trigger: AATGTCACTTCTGAAGGATCAGGTGAAAAGCTGGTC...TCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTCAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp TTGTTTGTTTTTGAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGATCAACTGCTCTGCCTaGCGGTTCTTCAGAACCACC +
Preference number: 4 (lower is better)
Translates to: LFVFEPILILWPQLTDSQINCSA*RFFRTT
Trigger: GGTGGTTCTGAAGAACCGGCAGGCAGAGCAGTTGAT...CTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTCAAAAACAAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp ACAATGTGGCTTAAGTACACAGTGTTTGTCAATTTAGGAAATGACCCTGAAGCATTCCCACTGCCCTGGTaGTTAAGGCTCATCCGTTCT +
Preference number: 4 (lower is better)
Translates to: TMWLKYTVFVNLGNDPEAFPLPW*LRLIRS
Trigger: AGAACGGATGAGCCTTAAGCACCAGGGCAGTGGGAA...TGCTTCAGGGTCATTTCCTAAATTGACAAACACTGTGTACTTAAGCCACATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp ACAATGTGGCTTAAGTACACAGTGTTTGTCAATTTAGGAAATGACCCTGAAGCACCACCGGATCCCACCTaGAGAGCATTTGTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: TMWLKYTVFVNLGNDPEAPPDPT*RAFVRF
Trigger: AAACCTCACAAATGCTCTCCAGGTGGGATCCGGTGG...TGCTTCAGGGTCATTTCCTAAATTGACAAACACTGTGTACTTAAGCCACATTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp GGTCCCAAGGATTCACAGATGGATTCTCTGGCAATCACATTCTTGATAAAAGTCAGGTCATCCATTCCATaGGAGACAGAGACTATTCCC +
Preference number: 4 (lower is better)
Translates to: GPKDSQMDSLAITFLIKVRSSIP*ETETIP
Trigger: GGGAATAGTCTCTGTCTCCCATGGAATGGATGACCT...GACTTTTATCAAGAATGTGATTGCCAGAGAATCCATCTGTGAATCCTTGGGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGTACCCAATAGGGTTTTaGATAGTCCTTTCAAACTGC +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTYPIGF*IVLSNC
Trigger: GCAGTTTGAAAGGACTATCCAAAACCCTATTGGGTA...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp ACAATGTGGCTTAAGTACACAGTGTTTGTCAATTTAGGAAATGACCCTGAAGCAGGGCCTGTTAGCTCTTaGAGAAGGATCTGGTCTCAT +
Preference number: 4 (lower is better)
Translates to: TMWLKYTVFVNLGNDPEAGPVSS*RRIWSH
Trigger: ATGAGACCAGATCCTTCTTCAAGAGCTAACAGGCCC...TGCTTCAGGGTCATTTCCTAAATTGACAAACACTGTGTACTTAAGCCACATTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCAGTGACATTGAACTCTaGAACCATCCGACTAGCCTC +
Preference number: 4 (lower is better)
Translates to: PTPLKFFHPYNILCFALASDIEL*NHPTSL
Trigger: GAGGCTAGTCGGATGGTTTCAGAGTTCAATGTCACT...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR TCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGGAGAACATTTTCCTCTaGACTCACTTTTTGATTGTC +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTENIFL*THFLIV
Trigger: GACAATCAAAAAGTGAGTTCAGAGGAAAATGTTCTC...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATAGCCTCAGATCTCTCTaGCAACTTCCATTTATTCTT +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYSLRSL*QLPFIL
Trigger: AAGAATAAATGGAAGTTGGCAGAGAGATCTGAGGCT...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp GGTCCCAAGGATTCACAGATGGATTCTCTGGCAATCACATTCTTGATAAAAGTCAAAAATCAACTGCTCTaGCTGCCGGTTCTTCAGAAC +
Preference number: 4 (lower is better)
Translates to: GPKDSQMDSLAITFLIKVKNQLL*LPVLQN
Trigger: GTTCTGAAGAACCGGCAGGCAGAGCAGTTGATTTTT...GACTTTTATCAAGAATGTGATTGCCAGAGAATCCATCTGTGAATCCTTGGGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATTTCACTCGTACTCAGTaGATAGTTTTCTGGCAAATC +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYFTRTQ*IVFWQI
Trigger: GATTTGCCAGAAAACTATCCACTGAGTACGAGTGAA...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGTTGCAATGCAGCATTTaGGCAGTCTTTCCACAGCTC +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRLQCSI*AVFPQL
Trigger: GAGCTGTGGAAAGACTGCCCAAATGCTGCATTGCAA...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCATCAGGGTTGGTGAGTaGCTTCATCTCCTTCCAATC +
Preference number: 4 (lower is better)
Translates to: PTPLKFFHPYNILCFALAIRVGE*LHLLPI
Trigger: GATTGGAAGGAGATGAAGCCACTCACCAACCCTGAT...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CAA 72 bp CTTTATTCAGGGTGGAGCAAAGGCTATATAGATATATaGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGG +
Preference number: 4 (lower is better)
Translates to: LYSGWSKGYIDI*ILESGKGFFLR
Trigger: CCTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTGCTCCACCCTGAATAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp ACAATGTGGCTTAAGTACACAGTGTTTGTCAATTTAGGAAATGACCCTGAAGCAAGTGACATTGAACTCTaGAACCATCCGACTAGCCTC +
Preference number: 4 (lower is better)
Translates to: TMWLKYTVFVNLGNDPEASDIEL*NHPTSL
Trigger: GAGGCTAGTCGGATGGTTTCAGAGTTCAATGTCACT...TGCTTCAGGGTCATTTCCTAAATTGACAAACACTGTGTACTTAAGCCACATTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp AGGGGGATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGACCAGCTTTTCACCTaGTCCTTCAGAAGTGACATT +
Preference number: 4 (lower is better)
Translates to: RGMKQKNSYQLKYSLVYIDQLFT*SFRSDI
Trigger: AATGTCACTTCTGAAGGATCAGGTGAAAAGCTGGTC...TATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCATCCCCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR GCA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGGATAATGTTCTTCTTTaGTCAACTCTCCTTGTTGTT +
Preference number: 4 (lower is better)
Translates to: EPILILWPQLTDSQPRRTDNVLL*STLLVV
Trigger: AACAACAAGGAGAGTTGAGCAAAGAAGAACATTATC...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGACTTCATCTTCTAACTaGTGTATTGTGGGCACAGCC +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRTSSSN*CIVGTA
Trigger: GGCTGTGCCCACAATACAGCAGTTAGAAGATGAAGT...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp GTTTTTGAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGATTCTTCAGTTGTTTTTaGTGTTTTCTGGAGAGGCAC +
Preference number: 4 (lower is better)
Translates to: VFEPILILWPQLTDSQPRFFSCF*CFLERH
Trigger: GTGCCTCTCCAGAAAACAGCAAAAACAACTGAAGAA...TCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTCAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp GTTTTTGAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGATTCTGTAATACCTCCTaGCTATCAGAGTCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: VFEPILILWPQLTDSQPRFCNTS*LSESSV
Trigger: AACAGAAGACTCTGATAGCCAGGAGGTATTACAGAA...TCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTCAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATATTCTTGTCTTTTCTTaGAGAACTCTCAGGAGCTTT +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYILVFS*RTLRSF
Trigger: AAAGCTCCTGAGAGTTCTCCAAGAAAAGACAAGAAT...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp ATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGTAAGTTCAAACTGCTGCTGGTaGGTGAATGGGTGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: MKQKNSYQLKYSLVYIVSSNCCW*VNGCGS
Trigger: GCTTCCACACCCATTCACCCACCAGCAGCAGTTTGA...ACTTACTATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CAA 72 bp CATAACTTATTTTTCAGTAGCCCAGATTCTGTCACTTaGTGCTTCCGTTATTCTGCGTCTTCCCTTGGAATG +
Preference number: 4 (lower is better)
Translates to: HNLFFSSPDSVT*CFRYSASSLGM
Trigger: CATTCCAAGGGAAGACGCAGAATAACGGAAGCACAAAGTGACAGAATCTGGGCTACTGAAAAATAAGTTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
3UTR CAA 72 bp GTAAGTTTAGACAAGCCAGGACTACACAGTGGGTCCTaGCTTAAAACAATAAGCATACAACTTAAACCAGGC +
Preference number: 4 (lower is better)
Translates to: VSLDKPGLHSGS*LKTISIQLKPG
Trigger: GCCTGGTTTAAGTTGTATGCTTATTGTTTTAAGCAAGGACCCACTGTGTAGTCCTGGCTTGTCTAAACTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR TCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCGCTTCCAGAAGTTTTTaGCGTTTTCCTTCTCCATCA +
Preference number: 4 (lower is better)
Translates to: PTPLKFFHPYNILCFALAASRSF*RFPSPS
Trigger: TGATGGAGAAGGAAAACGTCAAAAACTTCTGGAAGC...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR TCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGTTCTACCAAGGGAACTaGCTGCTTCCAGAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKFYQGN*LLPEVF
Trigger: AAAAACTTCTGGAAGCAGTCAGTTCCCTTGGTAGAA...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp GTTTTTGAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAGAGAACATTTTCCTCTaGACTCACTTTTTGATTGTC +
Preference number: 4 (lower is better)
Translates to: VFEPILILWPQLTDSQPRENIFL*THFLIV
Trigger: GACAATCAAAAAGTGAGTTCAGAGGAAAATGTTCTC...TCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTCAAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp TTGTTTGTTTTTGAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGACTTCATCTTCTAACTaGTGTATTGTGGGCACAGCC +
Preference number: 4 (lower is better)
Translates to: LFVFEPILILWPQLTDSQTSSSN*CIVGTA
Trigger: GGCTGTGCCCACAATACAGCAGTTAGAAGATGAAGT...CTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTCAAAAACAAACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATGTACCCTACATTTTCTaGTTTTATGGGCTTAATGAT +
Preference number: 4 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYVPYIF*FYGLND
Trigger: ATCATTAAGCCCATAAAAGCAGAAAATGTAGGGTAC...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp ATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGTAAGTGCGGCTCCTTCTCCATaGGAAAAATCAACTGCTCTG +
Preference number: 4 (lower is better)
Translates to: MKQKNSYQLKYSLVYIVSAAPSP*EKSTAL
Trigger: CAGAGCAGTTGATTTTTCCCATGGAGAAGGAGCCGC...ACTTACTATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGGAGTCTTCTGTTTCTTaGCCATCCATTAGCTTAGCA +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRESSVS*PSISLA
Trigger: TGCTAAGCTAATGGATGGCCAAGAAACAGAAGACTC...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR TCA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCGATACTTCTTACTCTTaGTTCTCTTCTCTCTTCGAG +
Preference number: 4 (lower is better)
Translates to: PTPLKFFHPYNILCFALADTSYS*FSSLFE
Trigger: CTCGAAGAGAGAAGAGAATCAAGAGTAAGAAGTATC...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR GCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGAGCCTCAGATCTCTCTaGCAACTTCCATTTATTCTT +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRSLRSL*QLPFIL
Trigger: AAGAATAAATGGAAGTTGGCAGAGAGATCTGAGGCT...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGTTCTTCAGTTGTTTTTaGTGTTTTCTGGAGAGGCAC +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRFFSCF*CFLERH
Trigger: GTGCCTCTCCAGAAAACAGCAAAAACAACTGAAGAA...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGTTCTGTAATACCTCCTaGCTATCAGAGTCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKFCNTS*LSESSV
Trigger: AACAGAAGACTCTGATAGCCAGGAGGTATTACAGAA...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGCAGGTCCAAGTCCTTTaGTTTATTTGTCTCTATAGC +
Preference number: 4 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKQVQVL*FICLYS
Trigger: GCTATAGAGACAAATAAACCAAAGGACTTGGACCTG...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGCAGGTCCAAGTCCTTTaGTTTATTTGTCTCTATAGC +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRQVQVL*FICLYS
Trigger: GCTATAGAGACAAATAAACCAAAGGACTTGGACCTG...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGTACCCAATAGGGTTTTaGATAGTCCTTTCAAACTGC +
Preference number: 4 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRYPIGF*IVLSNC
Trigger: GCAGTTTGAAAGGACTATCCAAAACCCTATTGGGTA...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp ATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGTAAGTATGGGCTTAATGATATaGCCTAGCTTGGTGCCAACC +
Preference number: 4 (lower is better)
Translates to: MKQKNSYQLKYSLVYIVSMGLMI*PSLVPT
Trigger: GGTTGGCACCAAGCTAGGCCATATCATTAAGCCCAT...ACTTACTATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR TCA 90 bp ACAATGTGGCTTAAGTACACAGTGTTTGTCAATTTAGGAAATGACCCTGAAGCAGATACTTCTTACTCTTaGTTCTCTTCTCTCTTCGAG +
Preference number: 4 (lower is better)
Translates to: TMWLKYTVFVNLGNDPEADTSYS*FSSLFE
Trigger: CTCGAAGAGAGAAGAGAATCAAGAGTAAGAAGTATC...TGCTTCAGGGTCATTTCCTAAATTGACAAACACTGTGTACTTAAGCCACATTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp ACAATGTGGCTTAAGTACACAGTGTTTGTCAATTTAGGAAATGACCCTGAAGCATCCTCTCTCTGGATATaGAGAACATTTTCCTCTGAA +
Preference number: 4 (lower is better)
Translates to: TMWLKYTVFVNLGNDPEASSLWI*RTFSSE
Trigger: TTCAGAGGAAAATGTTCTCCATATCCAGAGAGAGGA...TGCTTCAGGGTCATTTCCTAAATTGACAAACACTGTGTACTTAAGCCACATTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TGTGCACATATACTTTATTCAGGGTGGAGCAAAGGCTATATAGATATATTGATCGCAAGGTCCTCTCTCTaGATATGGAGAACATTTTCC +
Preference number: 4 (lower is better)
Translates to: CAHILYSGWSKGYIDILIARSSL*IWRTFS
Trigger: GGAAAATGTTCTCCATATCCAGAGAGAGGACCTTGC...GATCAATATATCTATATAGCCTTTGCTCCACCCTGAATAAAGTATATGTGCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CCA 90 bp ATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGTAAGTGTTTTTGCTGTTTTCTaGAGAGGCACTTCTGACTGC +
Preference number: 4 (lower is better)
Translates to: MKQKNSYQLKYSLVYIVSVFAVF*RGTSDC
Trigger: GCAGTCAGAAGTGCCTCTCCAGAAAACAGCAAAAAC...ACTTACTATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR GCA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGGTACCCTACATTTTCTaGTTTTATGGGCTTAATGAT +
Preference number: 4 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKVPYIF*FYGLND
Trigger: ATCATTAAGCCCATAAAAGCAGAAAATGTAGGGTAC...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR GCA 90 bp ACAATGTGGCTTAAGTACACAGTGTTTGTCAATTTAGGAAATGACCCTGAAGCAGATAATGTTCTTCTTTaGTCAACTCTCCTTGTTGTT +
Preference number: 4 (lower is better)
Translates to: TMWLKYTVFVNLGNDPEADNVLL*STLLVV
Trigger: AACAACAAGGAGAGTTGAGCAAAGAAGAACATTATC...TGCTTCAGGGTCATTTCCTAAATTGACAAACACTGTGTACTTAAGCCACATTGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CCA 90 bp TGTGCACATATACTTTATTCAGGGTGGAGCAAAGGCTATATAGATATATTGATCTTCACTCGTACTCAGTaGATAGTTTTCTGGCAAATC +
Preference number: 4 (lower is better)
Translates to: CAHILYSGWSKGYIDILIFTRTQ*IVFWQI
Trigger: GATTTGCCAGAAAACTATCCACTGAGTACGAGTGAA...GATCAATATATCTATATAGCCTTTGCTCCACCCTGAATAAAGTATATGTGCACA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CCA 90 bp TGTGCACATATACTTTATTCAGGGTGGAGCAAAGGCTATATAGATATATTGATCATTCTTGTCTTTTCTTaGAGAACTCTCAGGAGCTTT +
Preference number: 4 (lower is better)
Translates to: CAHILYSGWSKGYIDILIILVFS*RTLRSF
Trigger: AAAGCTCCTGAGAGTTCTCCAAGAAAAGACAAGAAT...GATCAATATATCTATATAGCCTTTGCTCCACCCTGAATAAAGTATATGTGCACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CAA 90 bp GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGCCAGGGGTTCTGGGACTTAGCCAATTGTTCTaGCATAGCTTTTCGAGCCTC +
Preference number: 5 (lower is better)
Translates to: EGGREGGREGGSEPGVLGLSQLF*HSFSSL
Trigger: GAGGCTCGAAAAGCTATGCAAGAACAATTGGCTAAG...TCCCAGAACCCCTGGCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS GCA 90 bp ATGGGTGCAACCGCTGGCGGCTCCTTCTCCATGGGAAAAATCAACTaGTCTGCCTGCCGGTTCTTCAGAACCACCGGATCCCACCTGGAG +
Preference number: 5 (lower is better)
Translates to: MGATAGGSFSMGKIN*SACRFFRTTGSHLE
Trigger: CTCCAGGTGGGATCCGGTGGTTCTGAAGAACCGGCAGGCAGAGCAGTTGATTTTTCCCATGGAGAAGGAGCCGCCAGCGGTTGCACCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS TCA 90 bp CTGCCGGTTCTTCAGAACCACCGGATCCCACCTGGAGAGCATTTGTaGGGTTTTGCTGAATGCTGCTTCCCTGAGGGCTCGGTCAGCCTC +
Preference number: 5 (lower is better)
Translates to: LPVLQNHRIPPGEHL*GFAECCFPEGSVSL
Trigger: GAGGCTGACCGAGCCCTCAGGGAAGCAGCATTCAGCAAAACCTCACAAATGCTCTCCAGGTGGGATCCGGTGGTTCTGAAGAACCGGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS GCA 90 bp TGCAACCGCTGGCGGCTCCTTCTCCATGGGAAAAATCAACTGCTCTaGCTGCCGGTTCTTCAGAACCACCGGATCCCACCTGGAGAGCAT +
Preference number: 5 (lower is better)
Translates to: CNRWRLLLHGKNQLL*LPVLQNHRIPPGEH
Trigger: ATGCTCTCCAGGTGGGATCCGGTGGTTCTGAAGAACCGGCAGGCAGAGCAGTTGATTTTTCCCATGGAGAAGGAGCCGCCAGCGGTTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCTCTGCTCGGCGTATCTaGGCTTCTTCCAGGCTCATG +
Preference number: 5 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPSARRI*ASSRLM
Trigger: CATGAGCCTGGAAGAAGCCAAGATACGCCGAGCAGA...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp CCTCTGCCCAGTCCCAGGCTGAACTTCTCTGTCCACACATCCCTCTCTAAGCCCCTTCTTCAGTTGTTTTaGCTGTTTTCTGGAGAGGCA +
Preference number: 5 (lower is better)
Translates to: PLPSPRLNFSVHTSLSKPLLQLF*LFSGEA
Trigger: TGCCTCTCCAGAAAACAGCAAAAACAACTGAAGAAG...GGGCTTAGAGAGGGATGTGTGGACAGAGAAGTTCAGCCTGGGACTGGGCAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp CCACTAAGGAAAGGGAGTCCTCCATTTTGCACCAGGAAATCTCAGGAAAGCTATCGGTCAGCCTCTTCTTaGTTAAGGGGTGGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: PLRKGSPPFCTRKSQESYRSASS*LRGGVS
Trigger: GCTCACCCCACCCCTTAACAAAGAAGAGGCTGACCG...ATAGCTTTCCTGAGATTTCCTGGTGCAAAATGGAGGACTCCCTTTCCTTAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGTCTGCTCGGCGTATCTaGGCTTCTTCCAGGCTCATG +
Preference number: 5 (lower is better)
Translates to: EPILILWPQLTDSQPRRTSARRI*ASSRLM
Trigger: CATGAGCCTGGAAGAAGCCAAGATACGCCGAGCAGA...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CCA 90 bp CAGGGATTTACACCATCTGCATTCATCTGTAGGTCATCCATTCCATaGGAGACAGAGACTATTCCCTCTTCTGTGCATCCGTCCTCTTCC +
Preference number: 5 (lower is better)
Translates to: QGFTPSAFICRSSIP*ETETIPSSVHPSSS
Trigger: GGAAGAGGACGGATGCACAGAAGAGGGAATAGTCTCTGTCTCCCATGGAATGGATGACCTACAGATGAATGCAGATGGTGTAAATCCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS TCA 90 bp CTCAACTCTCCTTGTTGTTCCAGAACATGTGCTCTCTCTAGCCTTTaGAGCACCAACAACTTCTCTGAGGCAAGGTCCTCTCTCTGGATA +
Preference number: 5 (lower is better)
Translates to: LNSPCCSRTCALSSL*STNNFSEARSSLWI
Trigger: TATCCAGAGAGAGGACCTTGCCTCAGAGAAGTTGTTGGTGCTTCAAAGGCTAGAGAGAGCACATGTTCTGGAACAACAAGGAGAGTTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CCA 90 bp TTGTTCCTTCTTTTTCTTCCCTCCAGAGGCATCAGGGTTGGTGAGTaGCTTCATCTCCTTCCAATCCCCTTTCAACAAAGGTCTGGAAAG +
Preference number: 5 (lower is better)
Translates to: LFLLFLPSRGIRVGE*LHLLPIPFQQRSGK
Trigger: CTTTCCAGACCTTTGTTGAAAGGGGATTGGAAGGAGATGAAGCCACTCACCAACCCTGATGCCTCTGGAGGGAAGAAAAAGAAGGAACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGCGGTCAGCCTCTTCTTaGTTAAGGGGTGGGGTGAGC +
Preference number: 5 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRRSASS*LRGGVS
Trigger: GCTCACCCCACCCCTTAACAAAGAAGAGGCTGACCG...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS TCA 90 bp CTCAACTTCTTCAGTTGTTTTTGCTGTTTTCTGGAGAGGCACTTCTaGCTGCTCTGTAGGATAGAGAGGTCAGACCTTGTGGAAGAGCAG +
Preference number: 5 (lower is better)
Translates to: LNFFSCFCCFLERHF*LLCRIERSDLVEEQ
Trigger: CTGCTCTTCCACAAGGTCTGACCTCTCTATCCTACAGAGCAGTCAGAAGTGCCTCTCCAGAAAACAGCAAAAACAACTGAAGAAGTTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS TCA 90 bp CTTATGACATCATCCCCAGCAAAAGCTTCCCTTATTAGCTGCTTGTaGTCGGTCTCCACTTCATCTTCTAACTGCTGTATTGTGGGCACA +
Preference number: 5 (lower is better)
Translates to: LMTSSPAKASLISCL*SVSTSSSNCCIVGT
Trigger: TGTGCCCACAATACAGCAGTTAGAAGATGAAGTGGAGACCGATCACAAGCAGCTAATAAGGGAAGCTTTTGCTGGGGATGATGTCATAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp GGTCCCAAGGATTCACAGATGGATTCTCTGGCAATCACATTCTTGATAAAAGTCCGCTTTGCATTGCTGTaGCAACTGCTAAGCATCCAG +
Preference number: 5 (lower is better)
Translates to: GPKDSQMDSLAITFLIKVRFALL*QLLSIQ
Trigger: CTGGATGCTTAGCAGTTGCAACAGCAATGCAAAGCG...GACTTTTATCAAGAATGTGATTGCCAGAGAATCCATCTGTGAATCCTTGGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CAA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGCTTCTTCAGTTGTTTTaGCTGTTTTCTGGAGAGGCA +
Preference number: 5 (lower is better)
Translates to: EPILILWPQLTDSQPRRTLLQLF*LFSGEA
Trigger: TGCCTCTCCAGAAAACAGCAAAAACAACTGAAGAAG...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp GAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGCCTCGAAGAACGTCTGTTCTTAGCCAATaGTTCTTGCATAGCTTTTCG +
Preference number: 5 (lower is better)
Translates to: EPILILWPQLTDSQPRRTSVLSQ*FLHSFS
Trigger: CGAAAAGCTATGCAAGAACAATTGGCTAAGAACAGA...CGTTCTTCGAGGCTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGCGCTTTGCATTGCTGTaGCAACTGCTAAGCATCCAG +
Preference number: 5 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRRFALL*QLLSIQ
Trigger: CTGGATGCTTAGCAGTTGCAACAGCAATGCAAAGCG...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGGCAGCTGCATGGATGTaGCGCTTCTCACTGATAATC +
Preference number: 5 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRAAAWM*RFSLII
Trigger: GATTATCAGTGAGAAGCGCAACATCCATGCAGCTGC...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp CAAAGGCTATATAGATATATTGATCCTGGAGAGTGGGAAGGGGTTCTTCTTAAGGCAGCTGCATGGATGTaGCGCTTCTCACTGATAATC +
Preference number: 5 (lower is better)
Translates to: QRLYRYIDPGEWEGVLLKAAAWM*RFSLII
Trigger: GATTATCAGTGAGAAGCGCAACATCCATGCAGCTGC...CTTAAGAAGAACCCCTTCCCACTCTCCAGGATCAATATATCTATATAGCCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp AGGGGGATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAGCTCAACTCTCCTTGTaGTTCCAGAACATGTGCTCT +
Preference number: 5 (lower is better)
Translates to: RGMKQKNSYQLKYSLVYIAQLSL*FQNMCS
Trigger: AGAGCACATGTTCTGGAACAACAAGGAGAGTTGAGC...TATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCATCCCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CAA 90 bp TTCCAGGAAATTGAACTTGTAACTTCCTCCAAGGATTACATGACATTCCCTAGGGCTCAACTCTCCTTGTaGTTCCAGAACATGTGCTCT +
Preference number: 5 (lower is better)
Translates to: FQEIELVTSSKDYMTFPRAQLSL*FQNMCS
Trigger: AGAGCACATGTTCTGGAACAACAAGGAGAGTTGAGC...CCTAGGGAATGTCATGTAATCCTTGGAGGAAGTTACAAGTTCAATTTCCTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS TCA 90 bp TCTTGGCCATCCATTAGCTTAGCATTGTTGGGATCAACTCTTTCTTaGAAGGATCTTTCTTTTAACACAAGTTCTTCTGCCACTGGTCTT +
Preference number: 5 (lower is better)
Translates to: SWPSISLALLGSTLS*KDLSFNTSSSATGL
Trigger: AAGACCAGTGGCAGAAGAACTTGTGTTAAAAGAAAGATCCTTTCAAGAAAGAGTTGATCCCAACAATGCTAAGCTAATGGATGGCCAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp CCAACACCACTTAAATTTTTCCACCCTTACAACATTCTGTGTTTTGCCTTAGCCTCTGTTCTTAGCCAATaGTTCTTGCATAGCTTTTCG +
Preference number: 5 (lower is better)
Translates to: PTPLKFFHPYNILCFALASVLSQ*FLHSFS
Trigger: CGAAAAGCTATGCAAGAACAATTGGCTAAGAACAGA...GGCTAAGGCAAAACACAGAATGTTGTAAGGGTGGAAAAATTTAAGTGGTGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS-3UTR CAA 90 bp AGGGGGATGAAGCAGAAGAATAGCTACCAGCTCAAATACAGCTTAGTATACATAAATTCTTGTCTTTTCTaGGAGAACTCTCAGGAGCTT +
Preference number: 5 (lower is better)
Translates to: RGMKQKNSYQLKYSLVYINSCLF*ENSQEL
Trigger: AAGCTCCTGAGAGTTCTCCAAGAAAAGACAAGAATT...TATGTATACTAAGCTGTATTTGAGCTGGTAGCTATTCTTCTGCTTCATCCCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000053760.12
CDS TCA 90 bp CCTCTGAACTCACTTTTTGATTGTCAGATTGATGACTTTCCTTGTTaGGTTTCTGTAATACCTCCTGGCTATCAGAGTCTTCTGTTTCTT +
Preference number: 5 (lower is better)
Translates to: PLNSLFDCQIDDFPC*VSVIPPGYQSLLFL
Trigger: AAGAAACAGAAGACTCTGATAGCCAGGAGGTATTACAGAAACTCAACAAGGAAAGTCATCAATCTGACAATCAAAAAGTGAGTTCAGAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS-3UTR CAA 90 bp TTGTTTGTTTTTGAGCCAATTCTCATTCTGTGGCCTCAACTAACTGATTCTCAGAATTCTTGTCTTTTCTaGGAGAACTCTCAGGAGCTT +
Preference number: 5 (lower is better)
Translates to: LFVFEPILILWPQLTDSQNSCLF*ENSQEL
Trigger: AAGCTCCTGAGAGTTCTCCAAGAAAAGACAAGAATT...CTGAGAATCAGTTAGTTGAGGCCACAGAATGAGAATTGGCTCAAAAACAAACAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS GCA 72 bp TGGCGGCTCCTTCTCCATGGGAAAAATCAACTGCTCTaGCTGCCGGTTCTTCAGAACCACCGGATCCCACCT +
Preference number: 6 (lower is better)
Translates to: WRLLLHGKNQLL*LPVLQNHRIPP
Trigger: AGGTGGGATCCGGTGGTTCTGAAGAACCGGCAGGCAGAGCAGTTGATTTTTCCCATGGAGAAGGAGCCGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS TCA 72 bp GGGCCACAAACTCAGGCATCTGTTCAGGATCGGTCTTaGTCTCACCCCGCTTTGCATTGCTGTTGCAACTGC +
Preference number: 6 (lower is better)
Translates to: GPQTQASVQDRS*SHPALHCCCNC
Trigger: GCAGTTGCAACAGCAATGCAAAGCGGGGTGAGATCAAGACCGATCCTGAACAGATGCCTGAGTTTGTGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CAA 72 bp AATGCTGCTTCCCTGAGGGCTCGGTCAGCCTCTTCTTaGTTAAGGGGTGGGGTGAGCGTCTTTGACTTGACT +
Preference number: 6 (lower is better)
Translates to: NAASLRARSASS*LRGGVSVFDLT
Trigger: AGTCAAGTCAAAGACGCTCACCCCACCCCTTAACAAAGAAGAGGCTGACCGAGCCCTCAGGGAAGCAGCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CAA 90 bp TCAGGCATCTGTTCAGGATCGGTCTTGATCTCACCCCGCTTTGCATaGCTGTTGCAACTGCTAAGCATCCAGGGATTTACACCATCTGCA +
Preference number: 6 (lower is better)
Translates to: SGICSGSVLISPRFA*LLQLLSIQGFTPSA
Trigger: TGCAGATGGTGTAAATCCCTGGATGCTTAGCAGTTGCAACAGCAATGCAAAGCGGGGTGAGATCAAGACCGATCCTGAACAGATGCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CCA 72 bp CTTTTTCTTCCCTCCAGAGGCATCAGGGTTGGTGAGTaGCTTCATCTCCTTCCAATCCCCTTTCAACAAAGG +
Preference number: 6 (lower is better)
Translates to: LFLPSRGIRVGE*LHLLPIPFQQR
Trigger: CCTTTGTTGAAAGGGGATTGGAAGGAGATGAAGCCACTCACCAACCCTGATGCCTCTGGAGGGAAGAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CAA 72 bp GGATCGGTCTTGATCTCACCCCGCTTTGCATTGCTGTaGCAACTGCTAAGCATCCAGGGATTTACACCATCT +
Preference number: 6 (lower is better)
Translates to: GSVLISPRFALL*QLLSIQGFTPS
Trigger: AGATGGTGTAAATCCCTGGATGCTTAGCAGTTGCAACAGCAATGCAAAGCGGGGTGAGATCAAGACCGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS TCA 72 bp CCTTGTTGTTCCAGAACATGTGCTCTCTCTAGCCTTTaGAGCACCAACAACTTCTCTGAGGCAAGGTCCTCT +
Preference number: 6 (lower is better)
Translates to: PCCSRTCALSSL*STNNFSEARSS
Trigger: AGAGGACCTTGCCTCAGAGAAGTTGTTGGTGCTTCAAAGGCTAGAGAGAGCACATGTTCTGGAACAACAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CCA 72 bp ACACCATCTGCATTCATCTGTAGGTCATCCATTCCATaGGAGACAGAGACTATTCCCTCTTCTGTGCATCCG +
Preference number: 6 (lower is better)
Translates to: TPSAFICRSSIP*ETETIPSSVHP
Trigger: CGGATGCACAGAAGAGGGAATAGTCTCTGTCTCCCATGGAATGGATGACCTACAGATGAATGCAGATGGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CAA 72 bp TGTGATCGGTCTCCACTTCATCTTCTAACTGCTGTATaGTGGGCACAGCCAAAGACCTCACAGGAGATGAGT +
Preference number: 6 (lower is better)
Translates to: CDRSPLHLLTAV*WAQPKTSQEMS
Trigger: ACTCATCTCCTGTGAGGTCTTTGGCTGTGCCCACAATACAGCAGTTAGAAGATGAAGTGGAGACCGATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CCA 72 bp AGCACCAACAACTTCTCTGAGGCAAGGTCCTCTCTCTaGATATGGAGAACATTTTCCTCTGAACTCACTTTT +
Preference number: 6 (lower is better)
Translates to: STNNFSEARSSL*IWRTFSSELTF
Trigger: AAAAGTGAGTTCAGAGGAAAATGTTCTCCATATCCAGAGAGAGGACCTTGCCTCAGAGAAGTTGTTGGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS CCA 72 bp TGTAATACCTCCTGGCTATCAGAGTCTTCTGTTTCTTaGCCATCCATTAGCTTAGCATTGTTGGGATCAACT +
Preference number: 6 (lower is better)
Translates to: CNTSWLSESSVS*PSISLALLGST
Trigger: AGTTGATCCCAACAATGCTAAGCTAATGGATGGCCAAGAAACAGAAGACTCTGATAGCCAGGAGGTATTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2
CDS TCA 72 bp TCCATTAGCTTAGCATTGTTGGGATCAACTCTTTCTTaGAAGGATCTTTCTTTTAACACAAGTTCTTCTGCC +
Preference number: 6 (lower is better)
Translates to: SISLALLGSTLS*KDLSFNTSSSA
Trigger: GGCAGAAGAACTTGTGTTAAAAGAAAGATCCTTTCAAGAAAGAGTTGATCCCAACAATGCTAAGCTAATGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053760.12
ENSMUST00000151622.2