Pregenerated sensors for USP50 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027364Ensembl transcript IDs: ENSMUST00000028842.9, ENSMUST00000130356.3, ENSMUST00000136319.8
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACATCCCCAATAGCTCAGTTTGAACATAGCACGACAGGCTGCCCGTaGCCAGCAGGAGACAGAGGAGGGCAGGCTCCAGCGGTCACTTCT | + |
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Preference number: 1 (lower is better) Translates to: TSPIAQFEHSTTGCP*PAGDRGGQAPAVTS Trigger: AGAAGTGACCGCTGGAGCCTGCCCTCCTCTGTCTCCTGCTGGCCACGGGCAGCCTGTCGTGCTATGTTCAAACTGAGCTATTGGGGATGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR GCA 90 bp | CTGCCCAAGCTTAATTGGCTCCATTACTTTGCATCTGAGGTGAAGTaGAGTCCCCTGTTAGCAAGGGTGTGTAAAGGAGACTGTTTGCCT | + |
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Preference number: 1 (lower is better) Translates to: LPKLNWLHYFASEVK*SPLLARVCKGDCLP Trigger: AGGCAAACAGTCTCCTTTACACACCCTTGCTAACAGGGGACTGCACTTCACCTCAGATGCAAAGTAATGGAGCCAATTAAGCTTGGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR CAA 90 bp | GTGAAGTGCAGTCCCCTGTTAGCAAGGGTGTGTAAAGGAGACTGTTaGCCTCGGAGCGGTCAGGAAGCAGGGAGGAGTCTTGCATTTTAT | + |
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Preference number: 2 (lower is better) Translates to: VKCSPLLARVCKGDC*PRSGQEAGRSLAFY Trigger: ATAAAATGCAAGACTCCTCCCTGCTTCCTGACCGCTCCGAGGCAAACAGTCTCCTTTACACACCCTTGCTAACAGGGGACTGCACTTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR-3UTR CCA 90 bp | AAGGAGACTGTTTGCCTCGGAGCGGTCAGGAAGCAGGGAGGAGTCTTGCATTTTGGATTAAACTTCTCATaGCATGTGTGTTGGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: KETVCLGAVRKQGGVLHFGLNFS*HVCWAP Trigger: TGGAGCCCAACACACATGCCATGAGAAGTTTAATCC...AAAATGCAAGACTCCTCCCTGCTTCCTGACCGCTCCGAGGCAAACAGTCTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR CAA 90 bp | ACATCCAGTCTCTTTGTGTGGATTAAACTTCTCATGGCATGTGTGTaGGGCTCCATGACCACACTTGAGGCAGAAAGTAGAAGCTTTCAG | + |
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Preference number: 2 (lower is better) Translates to: TSSLFVWIKLLMACV*GSMTTLEAESRSFQ Trigger: CTGAAAGCTTCTACTTTCTGCCTCAAGTGTGGTCATGGAGCCCAACACACATGCCATGAGAAGTTTAATCCACACAAAGAGACTGGATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR-3UTR TCA 90 bp | GGTCAGGAAGCAGGGAGGAGTCTTGCATTTTATCTTGTTATAAAATCCAACTTTCACCTGGATAGTTGCTaGTGGTTGCAGCTGGAAATG | + |
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Preference number: 2 (lower is better) Translates to: GQEAGRSLAFYLVIKSNFHLDSC*WLQLEM Trigger: CATTTCCAGCTGCAACCATCAGCAACTATCCAGGTG...AAAGTTGGATTTTATAACAAGATAAAATGCAAGACTCCTCCCTGCTTCCTGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR-3UTR TCA 90 bp | CGGTCAGGAAGCAGGGAGGAGTCTTGCATTTTATCTTGTTATAAAATCCAACTTGAAGCTTTCAGTCTCTaGAAAGCCATGACCAAGATT | + |
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Preference number: 2 (lower is better) Translates to: RSGSREESCILSCYKIQLEAFSL*KAMTKI Trigger: AATCTTGGTCATGGCTTTTCAGAGACTGAAAGCTTC...AAGTTGGATTTTATAACAAGATAAAATGCAAGACTCCTCCCTGCTTCCTGACCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR GCA 72 bp | TCCCCAATAGCTCAGTTTGAACATAGCACGACAGGCTaGCCGTGGCCAGCAGGAGACAGAGGAGGGCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: SPIAQFEHSTTG*PWPAGDRGGQA Trigger: AGCCTGCCCTCCTCTGTCTCCTGCTGGCCACGGGCAGCCTGTCGTGCTATGTTCAAACTGAGCTATTGGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR GCA 72 bp | CCTGCCTCAGGCTCCCCAGGTAGCTGGAATTGCAGATaGATGCCACTGTACTCAATGGCTGATGTCTCGAAG | + |
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Preference number: 3 (lower is better) Translates to: PASGSPGSWNCR*MPLYSMADVSK Trigger: CTTCGAGACATCAGCCATTGAGTACAGTGGCATGCATCTGCAATTCCAGCTACCTGGGGAGCCTGAGGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR GCA 72 bp | CCTCAGGCTCCCCAGGTAGCTGGAATTGCAGATGCATaGCACTGTACTCAATGGCTGATGTCTCGAAGCTGT | + |
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Preference number: 3 (lower is better) Translates to: PQAPQVAGIADA*HCTQWLMSRSC Trigger: ACAGCTTCGAGACATCAGCCATTGAGTACAGTGGCATGCATCTGCAATTCCAGCTACCTGGGGAGCCTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR TCA 72 bp | AGAAGCTTTCAGTCTCTGAAAAGCCATGACCAAGATTaGCCTCTAACTCCTGGGCTTAAGAGATTCTCCTGC | + |
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Preference number: 3 (lower is better) Translates to: RSFQSLKSHDQD*PLTPGLKRFSC Trigger: GCAGGAGAATCTCTTAAGCCCAGGAGTTAGAGGTCAATCTTGGTCATGGCTTTTCAGAGACTGAAAGCTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR TCA 72 bp | GTTATAAAATCCAACTTTGTTCACCTGGATAGTTGCTaGTGGTTGCAGCTGGAAATGATAACTGGCATGTCC | + |
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Preference number: 3 (lower is better) Translates to: VIKSNFVHLDSC*WLQLEMITGMS Trigger: GGACATGCCAGTTATCATTTCCAGCTGCAACCATCAGCAACTATCCAGGTGAACAAAGTTGGATTTTATAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR CAA 72 bp | AGTCCCCTGTTAGCAAGGGTGTGTAAAGGAGACTGTTaGCCTCGGAGCGGTCAGGAAGCAGGGAGGAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: SPLLARVCKGDC*PRSGQEAGRSL Trigger: AAGACTCCTCCCTGCTTCCTGACCGCTCCGAGGCAAACAGTCTCCTTTACACACCCTTGCTAACAGGGGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR GCA 90 bp | TTTGCCTCGGAGCGGTCAGGAAGCAGGGAGGAGTCTTGCATTTTATCTTGTTATGGGCCGGCACCTTCCTaGAGCAGCTTTGGCCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: FASERSGSREESCILSCYGPAPS*SSFGLF Trigger: GAACAGGCCAAAGCTGCTGCAGGAAGGTGCCGGCCC...ATAACAAGATAAAATGCAAGACTCCTCCCTGCTTCCTGACCGCTCCGAGGCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR GCA 90 bp | AAGGAGACTGTTTGCCTCGGAGCGGTCAGGAAGCAGGGAGGAGTCTTGCATTTTCGTGGTCCTCACAGCTaGCTCTTGCTTGATTTCACA | + |
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Preference number: 4 (lower is better) Translates to: KETVCLGAVRKQGGVLHFRGPHS*LLLDFT Trigger: TGTGAAATCAAGCAAGAGGCAGCTGTGAGGACCACG...AAAATGCAAGACTCCTCCCTGCTTCCTGACCGCTCCGAGGCAAACAGTCTCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR GCA 90 bp | CCTCAGGCTCCCCAGGTAGCTGGAATTGCAGATGCATGCCACTGTACTCAATGGGCTTCCTCTTTACTGTaGCCTGGATGTCAAACCTTT | + |
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Preference number: 4 (lower is better) Translates to: PQAPQVAGIADACHCTQWASSLL*PGCQTF Trigger: AAAGGTTTGACATCCAGGGCACAGTAAAGAGGAAGC...CCATTGAGTACAGTGGCATGCATCTGCAATTCCAGCTACCTGGGGAGCCTGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR GCA 90 bp | CCTCAGGCTCCCCAGGTAGCTGGAATTGCAGATGCATGCCACTGTACTCAATGGAAAACTTCGTTCTTGTaGGTGCAGCTCTCACACTTT | + |
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Preference number: 4 (lower is better) Translates to: PQAPQVAGIADACHCTQWKTSFL*VQLSHF Trigger: AAAGTGTGAGAGCTGCACGCACAAGAACGAAGTTTT...CCATTGAGTACAGTGGCATGCATCTGCAATTCCAGCTACCTGGGGAGCCTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CCA 90 bp | TTTGCCTCGGAGCGGTCAGGAAGCAGGGAGGAGTCTTGCATTTTATCTTGTTATGAAGTACTCCACCAGTaGAGATACGCTGCAGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: FASERSGSREESCILSCYEVLHQ*RYAAEA Trigger: TGCCTCTGCAGCGTATCTCCACTGGTGGAGTACTTC...ATAACAAGATAAAATGCAAGACTCCTCCCTGCTTCCTGACCGCTCCGAGGCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CCA 90 bp | TGGCTCCATTACTTTGCATCTGAGGTGAAGTGCAGTCCCCTGTTAGCAAGGGTGACATTCATAGTCAGATaGGATGGGGAGGGAGAGGAT | + |
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Preference number: 4 (lower is better) Translates to: WLHYFASEVKCSPLLARVTFIVR*DGEGED Trigger: ATCCTCTCCCTCCCCATCCCATCTGACTATGAATGT...CACCCTTGCTAACAGGGGACTGCACTTCACCTCAGATGCAAAGTAATGGAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR TCA 90 bp | GGGAAGATTTATTTTGCCCCACAGTTTCGGAGACTTCTGCCCAAGCTTAATTGGGGAGGGAGAGGATGGTaGAAACTTCGTTCTTGTGCG | + |
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Preference number: 4 (lower is better) Translates to: GKIYFAPQFRRLLPKLNWGGRGW*KLRSCA Trigger: CGCACAAGAACGAAGTTTTCACCATCCTCTCCCTCC...CCAATTAAGCTTGGGCAGAAGTCTCCGAAACTGTGGGGCAAAATAAATCTTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CCA 90 bp | TGGCTCCATTACTTTGCATCTGAGGTGAAGTGCAGTCCCCTGTTAGCAAGGGTGTTCCTGCAGCAGCTTTaGCCTGTTCTTTTCTCATTC | + |
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Preference number: 4 (lower is better) Translates to: WLHYFASEVKCSPLLARVFLQQL*PVLFSF Trigger: GAATGAGAAAAGAACAGGCCAAAGCTGCTGCAGGAA...CACCCTTGCTAACAGGGGACTGCACTTCACCTCAGATGCAAAGTAATGGAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CCA 90 bp | CCTCAGGCTCCCCAGGTAGCTGGAATTGCAGATGCATGCCACTGTACTCAATGGATGTTTCCGGAAAACTaGACAGATATAAGGAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: PQAPQVAGIADACHCTQWMFPEN*TDIRSE Trigger: CTCACTCCTTATATCTGTCCAGTTTTCCGGAAACAT...CCATTGAGTACAGTGGCATGCATCTGCAATTCCAGCTACCTGGGGAGCCTGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR GCA 90 bp | AGACTGTTTGCCTCGGAGCGGTCAGGAAGCAGGGAGGAGTCTTGCATTTTATCTAACTCCTGCGCATCTTaGTGTGTCTTTTTCAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: RLFASERSGSREESCILSNSCAS*CVFFRK Trigger: TTTTCTGAAAAAGACACAGCAAGATGCGCAGGAGTT...AGATAAAATGCAAGACTCCTCCCTGCTTCCTGACCGCTCCGAGGCAAACAGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR CAA 72 bp | CTCTTTGTGTGGATTAAACTTCTCATGGCATGTGTGTaGGGCTCCATGACCACACTTGAGGCAGAAAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: LFVWIKLLMACV*GSMTTLEAESR Trigger: TCTACTTTCTGCCTCAAGTGTGGTCATGGAGCCCAACACACATGCCATGAGAAGTTTAATCCACACAAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR GCA 90 bp | GGGAAGATTTATTTTGCCCCACAGTTTCGGAGACTTCTGCCCAAGCTTAATTGGAACAATAGATTTGGTTaGTCCAGGTCAGTGTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: GKIYFAPQFRRLLPKLNWNNRFG*SRSVCP Trigger: AGGACACACTGACCTGGAGCAACCAAATCTATTGTT...CCAATTAAGCTTGGGCAGAAGTCTCCGAAACTGTGGGGCAAAATAAATCTTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CCA 90 bp | CATCCAGTCTCTTTGTGTGGATTAAACTTCTCATGGCATGTGTGTTGGGCTCCACTTTTTCAGAAAAGCTaGGTAAAGACTGCCAACAGC | + |
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Preference number: 4 (lower is better) Translates to: HPVSLCGLNFSWHVCWAPLFQKS*VKTANS Trigger: GCTGTTGGCAGTCTTTACCCAGCTTTTCTGAAAAAG...TGGAGCCCAACACACATGCCATGAGAAGTTTAATCCACACAAAGAGACTGGATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CCA 90 bp | ATGATAACTGGCATGTCCACATCCAGTCTCTTTGTGTGGATTAAACTTCTCATGCGCACAGGTTGTACATaGGATGTTTCCGGAAAACTG | + |
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Preference number: 4 (lower is better) Translates to: MITGMSTSSLFVWIKLLMRTGCT*DVSGKL Trigger: CAGTTTTCCGGAAACATCCCATGTACAACCTGTGCG...CATGAGAAGTTTAATCCACACAAAGAGACTGGATGTGGACATGCCAGTTATCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR GCA 90 bp | ATGATAACTGGCATGTCCACATCCAGTCTCTTTGTGTGGATTAAACTTCTCATGCTTCGTTCTTGTGCGTaGAGCTCTCACACTTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: MITGMSTSSLFVWIKLLMLRSCA*SSHTLN Trigger: GTTTAAAGTGTGAGAGCTGCACGCACAAGAACGAAG...CATGAGAAGTTTAATCCACACAAAGAGACTGGATGTGGACATGCCAGTTATCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| 3UTR CAA 72 bp | ATGCCACTGTACTCAATGGCTGATGTCTCGAAGCTGTaGGTGATCTTAAGGTTAGTTTTCATCATCCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: MPLYSMADVSKL*VILRLVFIILV Trigger: TACAAGGATGATGAAAACTAACCTTAAGATCACCAACAGCTTCGAGACATCAGCCATTGAGTACAGTGGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS CCA 90 bp | GCAGGTGTTGCCCAGGTTCCGCAGTCCCGTCACGCCCTGGAAGTGTaGCTGGGTCTTAGACTCCGGCAGGGAGTCATAGTCTGCACACTC | + |
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Preference number: 5 (lower is better) Translates to: AGVAQVPQSRHALEV*LGLRLRQGVIVCTL Trigger: GAGTGTGCAGACTATGACTCCCTGCCGGAGTCTAAGACCCAGCCACACTTCCAGGGCGTGACGGGACTGCGGAACCTGGGCAACACCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028842.9 |
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| CDS CCA 90 bp | GGCCACTTTCGGATAGCTTGCTTGCAGTGGTCAGGAGTACTGTCCTaGCTCTTGCGTTTCTGTGCTGGTATAGAAAAAGGCTGGCAGCTA | + |
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Preference number: 5 (lower is better) Translates to: GHFRIACLQWSGVLS*LLRFCAGIEKGWQL Trigger: TAGCTGCCAGCCTTTTTCTATACCAGCACAGAAACGCAAGAGCCAGGACAGTACTCCTGACCACTGCAAGCAAGCTATCCGAAAGTGGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 |
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| CDS TCA 90 bp | GGTTGTACATGGGATGTTTCCGGAAAACTGGACAGATATAAGGAGTaGGGTCCAGGTTGGTCAGGGGGTAATGGATGTCTGTCCGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: GCTWDVSGKLDRYKE*GPGWSGGNGCLSAA Trigger: AGCTGCGGACAGACATCCATTACCCCCTGACCAACCTGGACCTCACTCCTTATATCTGTCCAGTTTTCCGGAAACATCCCATGTACAACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS GCA 90 bp | CTCGGGTGTCATCAAAGCTGTACCAGGCCTGAGTTACCGAGTTCTTaGAGAAAGCAGTGTAGTGACCACCATCCAGATCTCCAAAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: LGCHQSCTRPELPSS*RKQCSDHHPDLQSG Trigger: ACCACTTTGGAGATCTGGATGGTGGTCACTACACTGCTTTCTGCAAGAACTCGGTAACTCAGGCCTGGTACAGCTTTGATGACACCCGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 |
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| CDS-3UTR CAA 90 bp | TGGCTCCATTACTTTGCATCTGAGGTGAAGTGCAGTCCCCTGTTAGCAAGGGTGCTTCCTGCAGCAGCTTaGGCCTGTTCTTTTCTCATT | + |
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Preference number: 5 (lower is better) Translates to: WLHYFASEVKCSPLLARVLPAAA*ACSFLI Trigger: AATGAGAAAAGAACAGGCCAAAGCTGCTGCAGGAAG...CACCCTTGCTAACAGGGGACTGCACTTCACCTCAGATGCAAAGTAATGGAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS GCA 90 bp | TTGCTTGCAGTGGTCAGGAGTACTGTCCTGGCTCTTGCGTTTCTGTaGTGGTATAGAAAAAGGCTGGCAGCTATAGAACAGAAGATAGGC | + |
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Preference number: 5 (lower is better) Translates to: LLAVVRSTVLALAFL*WYRKRLAAIEQKIG Trigger: GCCTATCTTCTGTTCTATAGCTGCCAGCCTTTTTCTATACCAGCACAGAAACGCAAGAGCCAGGACAGTACTCCTGACCACTGCAAGCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 |
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| CDS GCA 90 bp | CCTGCGCATCTTGCTGTGTCTTTTTCAGAAAAGCTGGGTAAAGACTaGCAACAGCCGACAGAAATATCTCTGGTGAGACACAGTCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: PAHLAVSFSEKLGKD*QQPTEISLVRHSLS Trigger: ACTCAGACTGTGTCTCACCAGAGATATTTCTGTCGGCTGTTGGCAGTCTTTACCCAGCTTTTCTGAAAAAGACACAGCAAGATGCGCAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS-3UTR CAA 90 bp | TGGCTCCATTACTTTGCATCTGAGGTGAAGTGCAGTCCCCTGTTAGCAAGGGTGACAGCTGCCTCTTGCTaGATTTCACAAAAGGAACAA | + |
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Preference number: 5 (lower is better) Translates to: WLHYFASEVKCSPLLARVTAASC*ISQKEQ Trigger: TTGTTCCTTTTGTGAAATCAAGCAAGAGGCAGCTGT...CACCCTTGCTAACAGGGGACTGCACTTCACCTCAGATGCAAAGTAATGGAGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS TCA 90 bp | TCACTCTTCTTCGGCAGTGCTTTTTCAAAGCTTCGTGAAGCTCGTTaGGGACGTAAATCAGGAACTCCTGCGCATCTTGCTGTGTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: SLFFGSAFSKLREAR*GRKSGTPAHLAVSF Trigger: AAAAGACACAGCAAGATGCGCAGGAGTTCCTGATTTACGTCCTCAACGAGCTTCACGAAGCTTTGAAAAAGCACTGCCGAAGAAGAGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS GCA 90 bp | AATGTGATGCTTTTTGATCTTTCGCTGCAGGTGGTAAAGCACCACTaGGCACAGGTTGTACATGGGATGTTTCCGGAAAACTGGACAGAT | + |
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Preference number: 5 (lower is better) Translates to: NVMLFDLSLQVVKHH*AQVVHGMFPENWTD Trigger: ATCTGTCCAGTTTTCCGGAAACATCCCATGTACAACCTGTGCGCAGTGGTGCTTTACCACCTGCAGCGAAAGATCAAAAAGCATCACATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CAA 90 bp | ATGACCACACTTGAGGCAGAAAGTAGAAGCTTTCAGTCTCTGAAAAGCCATGACGTGAAAACTTCGTTCTaGTGCGTGCAGCTCTCACAC | + |
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Preference number: 5 (lower is better) Translates to: MTTLEAESRSFQSLKSHDVKTSF*CVQLSH Trigger: GTGTGAGAGCTGCACGCACAAGAACGAAGTTTTCAC...GTCATGGCTTTTCAGAGACTGAAAGCTTCTACTTTCTGCCTCAAGTGTGGTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CAA 90 bp | ATGATAACTGGCATGTCCACATCCAGTCTCTTTGTGTGGATTAAACTTCTCATGACCACTGCGCACAGGTaGTACATGGGATGTTTCCGG | + |
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Preference number: 5 (lower is better) Translates to: MITGMSTSSLFVWIKLLMTTAHR*YMGCFR Trigger: CCGGAAACATCCCATGTACAACCTGTGCGCAGTGGT...CATGAGAAGTTTAATCCACACAAAGAGACTGGATGTGGACATGCCAGTTATCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CAA 90 bp | GGGAAGATTTATTTTGCCCCACAGTTTCGGAGACTTCTGCCCAAGCTTAATTGGAAAGGAACAATAGATTaGGTTGCTCCAGGTCAGTGT | + |
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Preference number: 5 (lower is better) Translates to: GKIYFAPQFRRLLPKLNWKGTID*VAPGQC Trigger: ACACTGACCTGGAGCAACCAAATCTATTGTTCCTTT...CCAATTAAGCTTGGGCAGAAGTCTCCGAAACTGTGGGGCAAAATAAATCTTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS-3UTR CAA 90 bp | ATGATAACTGGCATGTCCACATCCAGTCTCTTTGTGTGGATTAAACTTCTCATGGAACTCCTGCGCATCTaGCTGTGTCTTTTTCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: MITGMSTSSLFVWIKLLMELLRI*LCLFQK Trigger: TTTCTGAAAAAGACACAGCAAGATGCGCAGGAGTTC...CATGAGAAGTTTAATCCACACAAAGAGACTGGATGTGGACATGCCAGTTATCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS CCA 72 bp | CAGGTGTTGCCCAGGTTCCGCAGTCCCGTCACGCCCTaGAAGTGTGGCTGGGTCTTAGACTCCGGCAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: QVLPRFRSPVTP*KCGWVLDSGRE Trigger: CTCCCTGCCGGAGTCTAAGACCCAGCCACACTTCCAGGGCGTGACGGGACTGCGGAACCTGGGCAACACCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028842.9 |
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| CDS CCA 72 bp | TGTCCTTCAAACAGCCGGGTGATGATGGAGGTCTCCTaGGCCGGCACCTTCCTGCAGCAGCTTTGGCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: CPSNSRVMMEVS*AGTFLQQLWPV Trigger: AACAGGCCAAAGCTGCTGCAGGAAGGTGCCGGCCCAGGAGACCTCCATCATCACCCGGCTGTTTGAAGGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS GCA 72 bp | ACTGCAGTCCAGGTTGTAGTAGGCACCGAAGTCGTCTaGAGGGACCGGCCGATGAGACGCCATGTCAATGAA | + |
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Preference number: 6 (lower is better) Translates to: TAVQVVVGTEVV*RDRPMRRHVNE Trigger: TTCATTGACATGGCGTCTCATCGGCCGGTCCCTGCAGACGACTTCGGTGCCTACTACAACCTGGACTGCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130356.3 |
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| CDS CAA 72 bp | GGAGGTCTCCTGGGCCGGCACCTTCCTGCAGCAGCTTaGGCCTGTTCTTTTCTCATTCACTCTTCTTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: GGLLGRHLPAAA*ACSFLIHSSSA Trigger: TGCCGAAGAAGAGTGAATGAGAAAAGAACAGGCCAAAGCTGCTGCAGGAAGGTGCCGGCCCAGGAGACCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS CAA 90 bp | GGTGATGATGGAGGTCTCCTGGGCCGGCACCTTCCTGCAGCAGCTTaGGCCTGTTCTTTTCTCATTCACTCTTCTTCGGCAGTGCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: GDDGGLLGRHLPAAA*ACSFLIHSSSAVLF Trigger: AAAAAGCACTGCCGAAGAAGAGTGAATGAGAAAAGAACAGGCCAAAGCTGCTGCAGGAAGGTGCCGGCCCAGGAGACCTCCATCATCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS GCA 72 bp | GTGACCACCATCCAGATCTCCAAAGTGGTTCACCACTaGGCACAGGTTGTACATGGGATGTTTCCGGAAAAC | + |
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Preference number: 6 (lower is better) Translates to: VTTIQISKVVHH*AQVVHGMFPEN Trigger: GTTTTCCGGAAACATCCCATGTACAACCTGTGCGCAGTGGTGAACCACTTTGGAGATCTGGATGGTGGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 |
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| CDS CCA 72 bp | TGTGATGTACTTTCCGGACAGGAAGTACTCCACCAGTaGAGATACGCTGCAGAGGCATTGCAAGATGGCGTT | + |
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Preference number: 6 (lower is better) Translates to: CDVLSGQEVLHQ*RYAAEALQDGV Trigger: AACGCCATCTTGCAATGCCTCTGCAGCGTATCTCCACTGGTGGAGTACTTCCTGTCCGGAAAGTACATCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028842.9 ENSMUST00000136319.8 |
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| CDS TCA 72 bp | TGGGATGTTTCCGGAAAACTGGACAGATATAAGGAGTaGGGTCCAGGTTGGTCAGGGGGTAATGGATGTCTG | + |
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Preference number: 6 (lower is better) Translates to: WDVSGKLDRYKE*GPGWSGGNGCL Trigger: CAGACATCCATTACCCCCTGACCAACCTGGACCTCACTCCTTATATCTGTCCAGTTTTCCGGAAACATCCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS GCA 72 bp | CATCAAAGCTGTACCAGGCCTGAGTTACCGAGTTCTTaGAGAAAGCAGTGTAGTGACCACCATCCAGATCTC | + |
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Preference number: 6 (lower is better) Translates to: HQSCTRPELPSS*RKQCSDHHPDL Trigger: GAGATCTGGATGGTGGTCACTACACTGCTTTCTGCAAGAACTCGGTAACTCAGGCCTGGTACAGCTTTGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 |
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| CDS GCA 72 bp | ATGGGGAGGGAGAGGATGGTGAAAACTTCGTTCTTGTaGGTGCAGCTCTCACACTTTAAACATGTGATGCTG | + |
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Preference number: 6 (lower is better) Translates to: MGRERMVKTSFL*VQLSHFKHVML Trigger: CAGCATCACATGTTTAAAGTGTGAGAGCTGCACGCACAAGAACGAAGTTTTCACCATCCTCTCCCTCCCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS GCA 72 bp | CTTTTTGATCTTTCGCTGCAGGTGGTAAAGCACCACTaGGCACAGGTTGTACATGGGATGTTTCCGGAAAAC | + |
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Preference number: 6 (lower is better) Translates to: LFDLSLQVVKHH*AQVVHGMFPEN Trigger: GTTTTCCGGAAACATCCCATGTACAACCTGTGCGCAGTGGTGCTTTACCACCTGCAGCGAAAGATCAAAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000136319.8 |
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| CDS CAA 72 bp | TCCAGATCTCCAAAGTGGTTCACCACTGCGCACAGGTaGTACATGGGATGTTTCCGGAAAACTGGACAGATA | + |
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Preference number: 6 (lower is better) Translates to: SRSPKWFTTAHR*YMGCFRKTGQI Trigger: TATCTGTCCAGTTTTCCGGAAACATCCCATGTACAACCTGTGCGCAGTGGTGAACCACTTTGGAGATCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 |
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| CDS CCA 72 bp | CTCCTGCGCATCTTGCTGTGTCTTTTTCAGAAAAGCTaGGTAAAGACTGCCAACAGCCGACAGAAATATCTC | + |
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Preference number: 6 (lower is better) Translates to: LLRILLCLFQKS*VKTANSRQKYL Trigger: GAGATATTTCTGTCGGCTGTTGGCAGTCTTTACCCAGCTTTTCTGAAAAAGACACAGCAAGATGCGCAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS CAA 72 bp | CTGGCAGCTATAGAACAGAAGATAGGCTGTAGCTGTTaGAACAGAAGTATCTGGGATCTCACTGACTCGGGT | + |
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Preference number: 6 (lower is better) Translates to: LAAIEQKIGCSC*NRSIWDLTDSG Trigger: ACCCGAGTCAGTGAGATCCCAGATACTTCTGTTCAAACAGCTACAGCCTATCTTCTGTTCTATAGCTGCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 |
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| CDS CAA 72 bp | CTCGTTGAGGACGTAAATCAGGAACTCCTGCGCATCTaGCTGTGTCTTTTTCAGAAAAGCTGGGTAAAGACT | + |
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Preference number: 6 (lower is better) Translates to: LVEDVNQELLRI*LCLFQKSWVKT Trigger: AGTCTTTACCCAGCTTTTCTGAAAAAGACACAGCAAGATGCGCAGGAGTTCCTGATTTACGTCCTCAACGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS CAA 72 bp | CGGCACCTTGGAAATCGTGGTCCTCACAGCTGCCTCTaGCTTGATTTCACAAAAGGAACAATAGATTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: RHLGNRGPHSCL*LDFTKGTIDLV Trigger: AACCAAATCTATTGTTCCTTTTGTGAAATCAAGCAAGAGGCAGCTGTGAGGACCACGATTTCCAAGGTGCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS CAA 90 bp | AATTATTTTCGGCACCTTGGAAATCGTGGTCCTCACAGCTGCCTCTaGCTTGATTTCACAAAAGGAACAATAGATTTGGTTGCTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: NYFRHLGNRGPHSCL*LDFTKGTIDLVAPG Trigger: ACCTGGAGCAACCAAATCTATTGTTCCTTTTGTGAAATCAAGCAAGAGGCAGCTGTGAGGACCACGATTTCCAAGGTGCCGAAAATAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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| CDS GCA 72 bp | TATTTTCGGCACCTTGGAAATCGTGGTCCTCACAGCTaGCTCTTGCTTGATTTCACAAAAGGAACAATAGAT | + |
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Preference number: 6 (lower is better) Translates to: YFRHLGNRGPHS*LLLDFTKGTID Trigger: ATCTATTGTTCCTTTTGTGAAATCAAGCAAGAGGCAGCTGTGAGGACCACGATTTCCAAGGTGCCGAAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028842.9 ENSMUST00000130356.3 ENSMUST00000136319.8 |
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