RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USP49 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000090115

Ensembl transcript IDs: ENSMUST00000024779.15, ENSMUST00000131550.2, ENSMUST00000145314.2, ENSMUST00000152724.2

Found 367 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATCTCAGCCAGAGGGGCTGGGTTAAAGCTGGCAAGAGCTCTGCCTaGCATGGGATGAGAGCTACAGTTCCTGGTGCCAAGGCTAGCCCT +
Preference number: 1 (lower is better)
Translates to: HLSQRGWVKAGKSSA*HGMRATVPGAKASP
Trigger: AGGGCTAGCCTTGGCACCAGGAACTGTAGCTCTCATCCCATGGCAGGCAGAGCTCTTGCCAGCTTTAACCCAGCCCCTCTGGCTGAGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 90 bp CAGCCAATCACAGCGTTCAGGAGACTGCAGCCGGGAGAGCAGCACTaGGGGTATGTCCTGGAGTCAGCTAGTCAGGGTCTGTCTGTCTGT +
Preference number: 1 (lower is better)
Translates to: QPITAFRRLQPGEQH*GYVLESASQGLSVC
Trigger: ACAGACAGACAGACCCTGACTAGCTGACTCCAGGACATACCCCCAGTGCTGCTCTCCCGGCTGCAGTCTCCTGAACGCTGTGATTGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp CAGCTTTACGTCAGAGCCTCAGGCAGTGTGGGCAACTGGGACACCTaGCAACAGTGTCCAGGAGAGGAGGAGCCTGAGCAAAGCTCACAG +
Preference number: 1 (lower is better)
Translates to: QLYVRASGSVGNWDT*QQCPGEEEPEQSSQ
Trigger: CTGTGAGCTTTGCTCAGGCTCCTCCTCTCCTGGACACTGTTGTCAGGTGTCCCAGTTGCCCACACTGCCTGAGGCTCTGACGTAAAGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp CTCCTTAAGCACCACACCCCTAACTCGAGCTGCTGCTCCTGGAGCTaGGGTGTCATCTGTGGTTGCAGTGGCACCTTCATGTGGGTGGCT +
Preference number: 1 (lower is better)
Translates to: LLKHHTPNSSCCSWS*GVICGCSGTFMWVA
Trigger: AGCCACCCACATGAAGGTGCCACTGCAACCACAGATGACACCTCAGCTCCAGGAGCAGCAGCTCGAGTTAGGGGTGTGGTGCTTAAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 90 bp GCCTCTTCTGAAGGAAGGGGTGGCTCAAGCCTCGGCCTCGCTGTGTaGAGTGATGAGGTGACAGCAGTTCAGGAGAAACTGAGCCATGAC +
Preference number: 1 (lower is better)
Translates to: ASSEGRGGSSLGLAV*SDEVTAVQEKLSHD
Trigger: GTCATGGCTCAGTTTCTCCTGAACTGCTGTCACCTCATCACTCCACACAGCGAGGCCGAGGCTTGAGCCACCCCTTCCTTCAGAAGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 90 bp CTCGAGCTGCTGCTCCTGGAGCTGAGGTGTCATCTGTGGTTGCAGTaGCACCTTCATGTGGGTGGCTCAGTGGGGACAGTTGGTTTCACT +
Preference number: 1 (lower is better)
Translates to: LELLLLELRCHLWLQ*HLHVGGSVGTVGFT
Trigger: AGTGAAACCAACTGTCCCCACTGAGCCACCCACATGAAGGTGCCACTGCAACCACAGATGACACCTCAGCTCCAGGAGCAGCAGCTCGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 90 bp GCAGGCAAGGGCCACAAGCAAACGATCCAGTCAGTCCCTAAGCACTaGTCACACACTAGGGCAGTAAAAGCTCCTGAAGCCTGTGGGCAC +
Preference number: 1 (lower is better)
Translates to: AGKGHKQTIQSVPKH*SHTRAVKAPEACGH
Trigger: GTGCCCACAGGCTTCAGGAGCTTTTACTGCCCTAGTGTGTGAGCAGTGCTTAGGGACTGACTGGATCGTTTGCTTGTGGCCCTTGCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 90 bp GTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCCAGAGGGGCTaGGTTAAAGCTGGCAAGAGCTCTGCCTGCCATGGGATGAGAGCT +
Preference number: 1 (lower is better)
Translates to: VLHYVALPSHLSQRG*VKAGKSSACHGMRA
Trigger: AGCTCTCATCCCATGGCAGGCAGAGCTCTTGCCAGCTTTAACCCAGCCCCTCTGGCTGAGATGGGAGGGCAATGCCACATAGTGAAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp CGGCCAGTCCACCTCATTGGTTCGTCCCCTGAATGTGGATGGAGCTaGAGGCATAGCCAGAGCAGGGACCTCATACAATCATGGACTCGA +
Preference number: 1 (lower is better)
Translates to: RPVHLIGSSPECGWS*RHSQSRDLIQSWTR
Trigger: TCGAGTCCATGATTGTATGAGGTCCCTGCTCTGGCTATGCCTTCAGCTCCATCCACATTCAGGGGACGAACCAATGAGGTGGACTGGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 90 bp ACAGCAGTTCAGGAGAAACTGAGCCATGACAGACAGCCTTCCCATTaGCATGGAGGAAGTCTGCTCCTTGCCCCTCACCCTTCAGCTGCT +
Preference number: 1 (lower is better)
Translates to: TAVQEKLSHDRQPSH*HGGSLLLAPHPSAA
Trigger: AGCAGCTGAAGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCCAATGGGAAGGCTGTCTGTCATGGCTCAGTTTCTCCTGAACTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp ACTCAAGAGACAGGCATGAGCCCCAAACATGATCTGCAGTGGAGATaGAATGGGAATGGGACCACCCACTTCCCAGGGATGCACACGTGC +
Preference number: 1 (lower is better)
Translates to: TQETGMSPKHDLQWR*NGNGTTHFPGMHTC
Trigger: GCACGTGTGCATCCCTGGGAAGTGGGTGGTCCCATTCCCATTTCATCTCCACTGCAGATCATGTTTGGGGCTCATGCCTGTCTCTTGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 90 bp AAAGTTTTCATTCTTCACCATGGACCTCTCGGCTTACTCGGGCACTaGCGGCCAGTCCACCTCATTGGTTCGTCCCCTGAATGTGGATGG +
Preference number: 1 (lower is better)
Translates to: KVFILHHGPLGLLGH*RPVHLIGSSPECGW
Trigger: CCATCCACATTCAGGGGACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCATGGTGAAGAATGAAAACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp GGGCAACTGGGACACCTGACAACAGTGTCCAGGAGAGGAGGAGCCTaGGCAAAGCTCACAGAAAAGCCTGCCACAGACAGTAAAAACCAA +
Preference number: 1 (lower is better)
Translates to: GQLGHLTTVSRRGGA*AKLTEKPATDSKNQ
Trigger: TTGGTTTTTACTGTCTGTGGCAGGCTTTTCTGTGAGCTTTGCTCAGGCTCCTCCTCTCCTGGACACTGTTGTCAGGTGTCCCAGTTGCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 90 bp TTTGTTTTTAGGATGTTTCACTGTGATGCATCTGACACAGCGCTCTaGTTTGGCTATGTAGTACCGCAGCAGCCCTGCCCTGCCCTGCCC +
Preference number: 1 (lower is better)
Translates to: FVFRMFHCDASDTAL*FGYVVPQQPCPALP
Trigger: GGGCAGGGCAGGGCAGGGCTGCTGCGGTACTACATAGCCAAAGCAGAGCGCTGTGTCAGATGCATCACAGTGAAACATCCTAAAAACAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp CCAAAAACCTCCCTCTGTGTTGTAGCAATAGGCTGTGTAGTGTCCTaGGCCAAACCCTTTCCCGTGATGCATGACCACTGCGGAGAGATC +
Preference number: 1 (lower is better)
Translates to: PKTSLCVVAIGCVVS*AKPFPVMHDHCGEI
Trigger: GATCTCTCCGCAGTGGTCATGCATCACGGGAAAGGGTTTGGCTCAGGACACTACACAGCCTATTGCTACAACACAGAGGGAGGTTTTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
3UTR GCA 90 bp TTGGGAAGGGCCTCATTAGTAGGGGACTCACAACAGAGACAGACATaGTTGCTCTCCTGGTTGGCTGATGACTTACCCTGTCTCCTCTAC +
Preference number: 1 (lower is better)
Translates to: LGRASLVGDSQQRQT*LLSWLADDLPCLLY
Trigger: GTAGAGGAGACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGTCCCCTACTAATGAGGCCCTTCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp AACCTCACAGTGTTGTTTGAATCCAGCACGTCGTCCCTATCAGGATaGGCCACTCTGATTTCTTCCATGTCTGATGTCTGGCAGGCCCAC +
Preference number: 1 (lower is better)
Translates to: NLTVLFESSTSSLSG*ATLISSMSDVWQAH
Trigger: GTGGGCCTGCCAGACATCAGACATGGAAGAAATCAGAGTGGCTCATCCTGATAGGGACGACGTGCTGGATTCAAACAACACTGTGAGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 90 bp TCATTAGTAGGGGACTCACAACAGAGACAGACATGCTTGCTCTCCTaGTTGGCTGATGACTTACCCTGTCTCCTCTACCCAGATCCCTGT +
Preference number: 1 (lower is better)
Translates to: SLVGDSQQRQTCLLS*LADDLPCLLYPDPC
Trigger: ACAGGGATCTGGGTAGAGGAGACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGTCCCCTACTAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 90 bp GGTTCACATGTGCGCATTGTTTTGACACTGCTTCCTGATGGTTCATaGAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGGTC +
Preference number: 1 (lower is better)
Translates to: GSHVRIVLTLLPDGS*RRTPVLTQTLLPLV
Trigger: GACCAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGGAAGCAGTGTCAAAACAATGCGCACATGTGAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp AGCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTaGACAAAAATAAACTCTGCTATTGAGTCCATAGGACACATTAAC +
Preference number: 1 (lower is better)
Translates to: SRDLIQSWTREALPL*TKINSAIESIGHIN
Trigger: GTTAATGTGTCCTATGGACTCAATAGCAGAGTTTATTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 90 bp AGCCTTTTCTCATCATTTGTGCTCTCCCAACTAACCGGAAACCCTTaGTCACATAAGCTGCAACGCCATATAGGATGTGATAGACATTCA +
Preference number: 1 (lower is better)
Translates to: SLFSSFVLSQLTGNP*SHKLQRHIGCDRHS
Trigger: TGAATGTCTATCACATCCTATATGGCGTTGCAGCTTATGTGAGCAAGGGTTTCCGGTTAGTTGGGAGAGCACAAATGATGAGAAAAGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp AAGCTCATCTCATCTTCACTGCATTCTGAGAAGGCTTCTGACAACTaGTCCAAAAACCAATCTAAACCAAACCATGACTTTGAGCCCAGG +
Preference number: 1 (lower is better)
Translates to: KLISSSLHSEKASDN*SKNQSKPNHDFEPR
Trigger: CCTGGGCTCAAAGTCATGGTTTGGTTTAGATTGGTTTTTGGATCAGTTGTCAGAAGCCTTCTCAGAATGCAGTGAAGATGAGATGAGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 90 bp AGTGTTAACGCAGACTCTACTGCCATTGGTCACCTAGCTTCATCGTaGTTTAGAGAAAGCCTTTTCTCATCATTTGTGCTCTCCCAACTA +
Preference number: 1 (lower is better)
Translates to: SVNADSTAIGHLASS*FRESLFSSFVLSQL
Trigger: TAGTTGGGAGAGCACAAATGATGAGAAAAGGCTTTCTCTAAATCACGATGAAGCTAGGTGACCAATGGCAGTAGAGTCTGCGTTAACACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp ATGGACCTCTCGGCTTACTCGGGCACTGCCGGCCAGTCCACCTCATTGGTTCGTGGCAAGAGCTCTGCCTaGCATGGGATGAGAGCTACA +
Preference number: 2 (lower is better)
Translates to: MDLSAYSGTAGQSTSLVRGKSSA*HGMRAT
Trigger: TGTAGCTCTCATCCCATGGCAGGCAGAGCTCTTGCC...ACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp ATGGACCTCTCGGCTTACTCGGGCACTGCCGGCCAGTCCACCTCATTGGTTCGTGGTGTCATCTGTGGTTaGAGTGGCACCTTCATGTGG +
Preference number: 2 (lower is better)
Translates to: MDLSAYSGTAGQSTSLVRGVICG*SGTFMW
Trigger: CCACATGAAGGTGCCACTGCAACCACAGATGACACC...ACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp AGGCATAGCCAGAGCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGCCTGCCATGGGATaGGAGCTACAGTTCCTGGTG +
Preference number: 2 (lower is better)
Translates to: RHSQSRDLIQSWTREALPLPAMG*ELQFLV
Trigger: CACCAGGAACTGTAGCTCTCATCCCATGGCAGGCAG...TGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGCTCTGGCTATGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TGGACAGTGATGTGTGGGTGGAGACAAACGTGTCAGGGAGCACAAGGAAGCAGCGGCATGGAGGAAGTCTaGTCCTTGCCCCTCACCCTT +
Preference number: 2 (lower is better)
Translates to: WTVMCGWRQTCQGAQGSSGMEEV*SLPLTL
Trigger: AAGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCC...GCTGCTTCCTTGTGCTCCCTGACACGTTTGTCTCCACCCACACATCACTGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp TGGACAGTGATGTGTGGGTGGAGACAAACGTGTCAGGGAGCACAAGGAAGCAGCCAGAGCCCCAAAAGGTaGCCAGGAAGCAGCCTTGTA +
Preference number: 2 (lower is better)
Translates to: WTVMCGWRQTCQGAQGSSQSPKR*PGSSLV
Trigger: TACAAGGCTGCTTCCTGGTCACCTTTTGGGGCTCTG...GCTGCTTCCTTGTGCTCCCTGACACGTTTGTCTCCACCCACACATCACTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTCCTGCCCTGCCCTTCTaGAGCAGAGCTCTCCTTAAG +
Preference number: 2 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTPALPF*SRALLK
Trigger: CTTAAGGAGAGCTCTGCTGCAGAAGGGCAGGGCAGG...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTCCAGGGATCTGTTCCTaGCAAGCCCAAGAGGAGACC +
Preference number: 2 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTPGICS*QAQEET
Trigger: GGTCTCCTCTTGGGCTTGCCAGGAACAGATCCCTGG...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp TGGACAGTGATGTGTGGGTGGAGACAAACGTGTCAGGGAGCACAAGGAAGCAGCACTGGTGCTGCTGTCTaGTGTTCTTCCAGGCACGCA +
Preference number: 2 (lower is better)
Translates to: WTVMCGWRQTCQGAQGSSTGAAV*CSSRHA
Trigger: TGCGTGCCTGGAAGAACACCAGACAGCAGCACCAGT...GCTGCTTCCTTGTGCTCCCTGACACGTTTGTCTCCACCCACACATCACTGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp TGTACCAGGGAACCAGGTGGCGGTAGAGACGGGGTCTCCATAGTTTCATGTAGTTCTGACTGCCTCTTCTaGAGGAAGGGGTGGCTCAAG +
Preference number: 2 (lower is better)
Translates to: CTREPGGGRDGVSIVSCSSDCLF*RKGWLK
Trigger: CTTGAGCCACCCCTTCCTTCAGAAGAGGCAGTCAGA...ACTACATGAAACTATGGAGACCCCGTCTCTACCGCCACCTGGTTCCCTGGTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTCTGCCCGAGAAGTGTTaGGGATGGTGGAGACGGGTC +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFLPEKC*GWWRRV
Trigger: GACCCGTCTCCACCATCCTCAACACTTCTCGGGCAG...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp ATGGACCTCTCGGCTTACTCGGGCACTGCCGGCCAGTCCACCTCATTGGTTCGTGTCATTTTTGAGGGCTaGGGTGAATTCATCTTGGCT +
Preference number: 2 (lower is better)
Translates to: MDLSAYSGTAGQSTSLVRVIFEG*GEFILA
Trigger: AGCCAAGATGAATTCACCCCAGCCCTCAAAAATGAC...ACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CAA 90 bp GGAAGGGCCTCATTAGTAGGGGACTCACAACAGAGACAGACATGCTaGCTCTCCTGGTTGGCTGATGACTTACCCTGTCTCCTCTACCCA +
Preference number: 2 (lower is better)
Translates to: GRASLVGDSQQRQTC*LSWLADDLPCLLYP
Trigger: TGGGTAGAGGAGACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGTCCCCTACTAATGAGGCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp CAAAGGAGAACAGCAGTAAATACCACAGATGTGCCTGAAGTGTGGCCATGCCTCTCTCCCCTAGACCAGTaGGGCAAACCCAGGGATCTG +
Preference number: 2 (lower is better)
Translates to: QRRTAVNTTDVPEVWPCLSPLDQ*GKPRDL
Trigger: CAGATCCCTGGGTTTGCCTCACTGGTCTAGGGGAGA...GAGGCATGGCCACACTTCAGGCACATCTGTGGTATTTACTGCTGTTCTCCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTGGCAACTGGGACACCTaGCAACAGTGTCCAGGAGAG +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFGNWDT*QQCPGE
Trigger: CTCTCCTGGACACTGTTGTCAGGTGTCCCAGTTGCC...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp ATGGACCTCTCGGCTTACTCGGGCACTGCCGGCCAGTCCACCTCATTGGTTCGTACATGGCTTTCTTTTTaGATGGGCTTTCCTACAGTG +
Preference number: 2 (lower is better)
Translates to: MDLSAYSGTAGQSTSLVRTWLSF*MGFPTV
Trigger: CACTGTAGGAAAGCCCATTCAAAAAGAAAGCCATGT...ACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTGTAGCTTCAAACTCATaGTCCTCCTGCCTCAGCCTG +
Preference number: 2 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTVASNS*SSCLSL
Trigger: CAGGCTGAGGCAGGAGGATCATGAGTTTGAAGCTAC...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp TGCATACATCCAGCTTTGAGTCATTGCAGTGGACCCAAAAACCTCCCTCTGTGTCCAAACCCTTTCCCGTaGTGCATGACCACTGCGGAG +
Preference number: 2 (lower is better)
Translates to: CIHPALSHCSGPKNLPLCPNPFP*CMTTAE
Trigger: CTCCGCAGTGGTCATGCATCACGGGAAAGGGTTTGG...ACACAGAGGGAGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGGATGTATGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
3UTR-3UTR GCA 90 bp GAGGAGCCTGAGCAAAGCTCACAGAAAAGCCTGCCACAGACAGTAAAAACCAAAGAGGCTGTGGGGCACTaGAGTAGCCACTGCAAAGAG +
Preference number: 2 (lower is better)
Translates to: EEPEQSSQKSLPQTVKTKEAVGH*SSHCKE
Trigger: CTCTTTGCAGTGGCTACTGCAGTGCCCCACAGCCTC...TTTGGTTTTTACTGTCTGTGGCAGGCTTTTCTGTGAGCTTTGCTCAGGCTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTCATCTGTGGTTGCAGTaGCACCTTCATGTGGGTGGC +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFHLWLQ*HLHVGG
Trigger: GCCACCCACATGAAGGTGCCACTGCAACCACAGATG...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCACTGGGGGTATGTCCTaGAGTCAGCTAGTCAGGGTC +
Preference number: 2 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSTGGMS*SQLVRV
Trigger: GACCCTGACTAGCTGACTCCAGGACATACCCCCAGT...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp GAGGAGCCTGAGCAAAGCTCACAGAAAAGCCTGCCACAGACAGTAAAAACCAAATTTGAGCCCAGGCCTTaGTACAGGACTGGGGAAGTC +
Preference number: 2 (lower is better)
Translates to: EEPEQSSQKSLPQTVKTKFEPRP*YRTGEV
Trigger: GACTTCCCCAGTCCTGTAGCAAGGCCTGGGCTCAAA...TTTGGTTTTTACTGTCTGTGGCAGGCTTTTCTGTGAGCTTTGCTCAGGCTCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp CTTCCCATTGGCATGGAGGAAGTCTGCTCCTTGCCCCTCACCCTTCAGCTGCTCTGCAAGCTATGCCCCTaGATGGTATATTACCTTTTT +
Preference number: 2 (lower is better)
Translates to: LPIGMEEVCSLPLTLQLLCKLCP*MVYYLF
Trigger: AAAAAGGTAATATACCATCCAGGGGCATAGCTTGCA...GAGCAGCTGAAGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCCAATGGGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTAGACTCTACTGCCATTaGTCACCTAGCTTCATCGTG +
Preference number: 2 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTRLYCH*SPSFIV
Trigger: CACGATGAAGCTAGGTGACCAATGGCAGTAGAGTCT...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CAA 90 bp TTAGTAGGGGACTCACAACAGAGACAGACATGCTTGCTCTCCTGGTaGGCTGATGACTTACCCTGTCTCCTCTACCCAGATCCCTGTTAT +
Preference number: 2 (lower is better)
Translates to: LVGDSQQRQTCLLSW*ADDLPCLLYPDPCY
Trigger: ATAACAGGGATCTGGGTAGAGGAGACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGTCCCCTACTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp CTTCCCATTGGCATGGAGGAAGTCTGCTCCTTGCCCCTCACCCTTCAGCTGCTCTTATCCAGAAGCAACTaGCAAAAGGATCTTCATAGA +
Preference number: 2 (lower is better)
Translates to: LPIGMEEVCSLPLTLQLLLSRSN*QKDLHR
Trigger: TCTATGAAGATCCTTTTGTCAGTTGCTTCTGGATAA...GAGCAGCTGAAGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCCAATGGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp GCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTGAACAAAAAAGGTCTGTGTCCTTCTaGCTGCCTCTTCTGAAGGAA +
Preference number: 2 (lower is better)
Translates to: AGTSYNHGLERPCHCEQKRSVSF*LPLLKE
Trigger: TTCCTTCAGAAGAGGCAGTCAGAAGGACACAGACCT...TTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTGTCTGGCAGGCCCACTaGGAGCTCACCTCAAAGGAG +
Preference number: 2 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGVWQAH*ELTSKE
Trigger: CTCCTTTGAGGTGAGCTCTCAGTGGGCCTGCCAGAC...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp CAAAGGAGAACAGCAGTAAATACCACAGATGTGCCTGAAGTGTGGCCATGCCTCCAACAGAGACAGACATaGTTGCTCTCCTGGTTGGCT +
Preference number: 2 (lower is better)
Translates to: QRRTAVNTTDVPEVWPCLQQRQT*LLSWLA
Trigger: AGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTG...GAGGCATGGCCACACTTCAGGCACATCTGTGGTATTTACTGCTGTTCTCCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TGGACAGTGATGTGTGGGTGGAGACAAACGTGTCAGGGAGCACAAGGAAGCAGCTCATCTCATCTTCACTaGATTCTGAGAAGGCTTCTG +
Preference number: 2 (lower is better)
Translates to: WTVMCGWRQTCQGAQGSSSSHLH*ILRRLL
Trigger: CAGAAGCCTTCTCAGAATGCAGTGAAGATGAGATGA...GCTGCTTCCTTGTGCTCCCTGACACGTTTGTCTCCACCCACACATCACTGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTTTCACTATGTGGCATTaGCCTCCCATCTCAGCCAGA +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFFTMWH*PPISAR
Trigger: TCTGGCTGAGATGGGAGGGCAATGCCACATAGTGAA...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp GAGGAGCCTGAGCAAAGCTCACAGAAAAGCCTGCCACAGACAGTAAAAACCAAAAGACAGCCTTCCCATTaGCATGGAGGAAGTCTGCTC +
Preference number: 2 (lower is better)
Translates to: EEPEQSSQKSLPQTVKTKRQPSH*HGGSLL
Trigger: GAGCAGACTTCCTCCATGCCAATGGGAAGGCTGTCT...TTTGGTTTTTACTGTCTGTGGCAGGCTTTTCTGTGAGCTTTGCTCAGGCTCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTGAGCCTCAGGCAGTGTaGGCAACTGGGACACCTGAC +
Preference number: 2 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGEPQAV*ATGTPD
Trigger: GTCAGGTGTCCCAGTTGCCCACACTGCCTGAGGCTC...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp TTATGTGGTGCTAGCATCAGACTCTGGGCTTTATGCTTGCTAGGCAAGCACCCTATGTGGGTGGCTCAGTaGGGACAGTTGGTTTCACTT +
Preference number: 2 (lower is better)
Translates to: LCGASIRLWALCLLGKHPMWVAQ*GQLVSL
Trigger: AAGTGAAACCAACTGTCCCCACTGAGCCACCCACAT...AGGGTGCTTGCCTAGCAAGCATAAAGCCCAGAGTCTGATGCTAGCACCACATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTATAGCTACTGAGCCTTaGTGTAGAGTGGAGCATGGG +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFIATEP*CRVEHG
Trigger: CCCATGCTCCACTCTACACCAAGGCTCAGTAGCTAT...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTCCTCCAGAAAATAATTaGGGTTGGGGGAGGCATAAT +
Preference number: 2 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTPPENN*GWGRHN
Trigger: ATTATGCCTCCCCCAACCCCAATTATTTTCTGGAGG...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCTACCACAGATGTGCCTaGAGTGTGGCCATGCCTCCG +
Preference number: 2 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSYHRCA*SVAMPP
Trigger: CGGAGGCATGGCCACACTTCAGGCACATCTGTGGTA...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp GCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTGAACAAAAAAGGGCCAGGCTAGACTaGGGTAAGAAGTCATTTTTG +
Preference number: 2 (lower is better)
Translates to: AGTSYNHGLERPCHCEQKRARLD*GKKSFL
Trigger: CAAAAATGACTTCTTACCTCAGTCTAGCCTGGCCCT...TTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGGAGGCCTTGCCACTGTaGACAAAAATAAACTCTGCT +
Preference number: 2 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLEALPL*TKINSA
Trigger: AGCAGAGTTTATTTTTGTTCACAGTGGCAAGGCCTC...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTGAAAGAAGCTTACTGTaGCTGATAGGGAGGAAGGCT +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFERSLL*LIGRKA
Trigger: AGCCTTCCTCCCTATCAGGCACAGTAAGCTTCTTTC...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTCAAACAGCACAAAAATaGCTTACGGTATCGCTTCCA +
Preference number: 2 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTQTAQK*LTVSLP
Trigger: TGGAAGCGATACCGTAAGGCATTTTTGTGCTGTTTG...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTGGGTTTCAGGTGAGGTaGAATCCAGTCCTTTTCACT +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFGFQVR*NPVLFT
Trigger: AGTGAAAAGGACTGGATTGCACCTCACCTGAAACCC...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCATTAGGTCCCTAATCTaGTTACCAGTCCTGCTGATA +
Preference number: 2 (lower is better)
Translates to: LESHYLPQPVSTVQVVICIRSLI*LPVLLI
Trigger: TATCAGCAGGACTGGTAAGCAGATTAGGGACCTAAT...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCAGTGGCACCTTCATGTaGGTGGCTCAGTGGGGACAG +
Preference number: 2 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSSGTFM*VAQWGQ
Trigger: CTGTCCCCACTGAGCCACCCACATGAAGGTGCCACT...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTGAATGTGGATGGAGCTaGAGGCATAGCCAGAGCAGG +
Preference number: 2 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGECGWS*RHSQSR
Trigger: CCTGCTCTGGCTATGCCTTCAGCTCCATCCACATTC...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTTTCATGAACACTTGGTaGAGTCTCACAAGTTCAACA +
Preference number: 2 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTFMNTW*SLTSST
Trigger: TGTTGAACTTGTGAGACTTCACCAAGTGTTCATGAA...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCGCCTCATGTACTCTGTaGAGTGCTTTGGGAAGGGCC +
Preference number: 2 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVASCTL*SALGRA
Trigger: GGCCCTTCCCAAAGCACTGCACAGAGTACATGAGGC...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TGTACCAGGGAACCAGGTGGCGGTAGAGACGGGGTCTCCATAGTTTCATGTAGTCAGATCTGTATTCTCTaGCTGCAAATTCTCTTTCTG +
Preference number: 2 (lower is better)
Translates to: CTREPGGGRDGVSIVSCSQICIL*LQILFL
Trigger: CAGAAAGAGAATTTGCAGGCAGAGAATACAGATCTG...ACTACATGAAACTATGGAGACCCCGTCTCTACCGCCACCTGGTTCCCTGGTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TGGACAGTGATGTGTGGGTGGAGACAAACGTGTCAGGGAGCACAAGGAAGCAGCTTCAAGGCTTTACTATaGCTGATTTTATGTGGTGCT +
Preference number: 2 (lower is better)
Translates to: WTVMCGWRQTCQGAQGSSFKALL*LILCGA
Trigger: AGCACCACATAAAATCAGGCATAGTAAAGCCTTGAA...GCTGCTTCCTTGTGCTCCCTGACACGTTTGTCTCCACCCACACATCACTGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCGCCTTGCTACAGGACTaGGGAAGTCAGGAGTGTCCA +
Preference number: 2 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSALLQD*GSQECP
Trigger: TGGACACTCCTGACTTCCCCAGTCCTGTAGCAAGGC...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTAGGCTGGAGGCCTGGTaGCACACACTTAATCCCAGA +
Preference number: 2 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGRLEAW*HTLNPR
Trigger: TCTGGGATTAAGTGTGTGCCACCAGGCCTCCAGCCT...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CAA 90 bp AAGTGCTGGCCTTACAGGAGTGTTCCAGCACACATGGCTTTCTTTTaGAATGGGCTTTCCTACAGTGGTAACAAATCATCACCGTCATGC +
Preference number: 2 (lower is better)
Translates to: KCWPYRSVPAHMAFF*NGLSYSGNKSSPSC
Trigger: GCATGACGGTGATGATTTGTTACCACTGTAGGAAAGCCCATTCAAAAAGAAAGCCATGTGTGCTGGAACACTCCTGTAAGGCCAGCACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCGATTTCTTCCATGTCTaGTGTCTGGCAGGCCCACTG +
Preference number: 2 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVDFFHV*CLAGPL
Trigger: CAGTGGGCCTGCCAGACATCAGACATGGAAGAAATC...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTCAAAAACTTAAGACATaGCAGCTTTCAGAGCTTAAC +
Preference number: 2 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTQKLKT*QLSELN
Trigger: GTTAAGCTCTGAAAGCTGTCATGTCTTAAGTTTTTG...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp AAAGGTCTCTTTGTCAAGAGAGGAGAGCATGTCCCTGCAGCAGTAAGGTTCCATATACCTGGTCAAAGATaGCATGGACCCCAATCTTCT +
Preference number: 2 (lower is better)
Translates to: KGLFVKRGEHVPAAVRFHIPGQR*HGPQSS
Trigger: AGAAGATTGGGGTCCATGTCATCTTTGACCAGGTAT...ATGGAACCTTACTGCTGCAGGGACATGCTCTCCTCTCTTGACAAAGAGACCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
3UTR-3UTR CCA 90 bp TGCATACATCCAGCTTTGAGTCATTGCAGTGGACCCAAAAACCTCCCTCTGTGTTGGTCAAAGATGACATaGACCCCAATCTTCTCACGA +
Preference number: 2 (lower is better)
Translates to: CIHPALSHCSGPKNLPLCWSKMT*TPIFSR
Trigger: TCGTGAGAAGATTGGGGTCCATGTCATCTTTGACCA...ACACAGAGGGAGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGGATGTATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
3UTR-3UTR TCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCTGTGGAGTGATGAGGTaGCAGCAGTTCAGGAGAAAC +
Preference number: 2 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVCGVMR*QQFRRN
Trigger: GTTTCTCCTGAACTGCTGTCACCTCATCACTCCACA...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCAGAAGGGGATTTGCATaGTTTCACAAGAAAGTGACT +
Preference number: 2 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSRRGFA*FHKKVT
Trigger: AGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCT...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTGACCTCATACAATCATaGACTCGAGAGGCCTTGCCA +
Preference number: 2 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGDLIQS*TREALP
Trigger: TGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTC...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCCAGGATGAGCCACTCTaGTTTCTTCCATGTCTGATG +
Preference number: 2 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVQDEPL*FLPCLM
Trigger: CATCAGACATGGAAGAAATCAGAGTGGCTCATCCTG...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCATGTACTCTGTGCAGTaGTTTGGGAAGGGCCTCATT +
Preference number: 2 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSMYSVQ*FGKGLI
Trigger: AATGAGGCCCTTCCCAAAGCACTGCACAGAGTACAT...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TTATGTGGTGCTAGCATCAGACTCTGGGCTTTATGCTTGCTAGGCAAGCACCCTACAGTTCTGAGAAGGTaGTTTTCAGCTTTAGTATTG +
Preference number: 2 (lower is better)
Translates to: LCGASIRLWALCLLGKHPTVLRR*FSALVL
Trigger: CAATACTAAAGCTGAAAAGCACCTTCTCAGAACTGT...AGGGTGCTTGCCTAGCAAGCATAAAGCCCAGAGTCTGATGCTAGCACCACATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTATGAACTGCTTATTTTaGTGTTTCCATGAACCGACT +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFMNCLF*CFHEPT
Trigger: AGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCAT...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CCA 90 bp TGCATACATCCAGCTTTGAGTCATTGCAGTGGACCCAAAAACCTCCCTCTGTGTAGCAGTAAGGTTCCATaGTTAATACCTGGTCAAAGA +
Preference number: 2 (lower is better)
Translates to: CIHPALSHCSGPKNLPLCSSKVP*LIPGQR
Trigger: TCTTTGACCAGGTATTAACCATGGAACCTTACTGCT...ACACAGAGGGAGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGGATGTATGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
3UTR-3UTR CCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTTGCAAATTCTCTTTCTaGAATAAACAACACAGGGTT +
Preference number: 2 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFCKFSF*NKQHRV
Trigger: AACCCTGTGTTGTTTATTCCAGAAAGAGAATTTGCA...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTATTACCTTTTTAGTGTaGGTAACTCCTGTGACTTCA +
Preference number: 2 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGITFLV*VTPVTS
Trigger: TGAAGTCACAGGAGTTACTCACACTAAAAAGGTAAT...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR TCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCAAGGCTTCTGACAACTaGTCCAAAAACCAATCTAAA +
Preference number: 2 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSKASDN*SKNQSK
Trigger: TTTAGATTGGTTTTTGGATCAGTTGTCAGAAGCCTT...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR GCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCAGTCCTGCTGATAGCTaGTATAAAACTCTTCTTAAA +
Preference number: 2 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSSPADS*YKTLLK
Trigger: TTTAAGAAGAGTTTTATAGCAGCTATCAGCAGGACT...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp ACAGCGTTCAGGAGACTGCAGCCGGGAGAGCAGCACTaGGGGTATGTCCTGGAGTCAGCTAGTCAGGGTCTG +
Preference number: 3 (lower is better)
Translates to: TAFRRLQPGEQH*GYVLESASQGL
Trigger: CAGACCCTGACTAGCTGACTCCAGGACATACCCCCAGTGCTGCTCTCCCGGCTGCAGTCTCCTGAACGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp GCACACACAGGTCTGTGTCCTTCTGACTGCCTCTTCTaGAGGAAGGGGTGGCTCAAGCCTCGGCCTCGCTGT +
Preference number: 3 (lower is better)
Translates to: AHTGLCPSDCLF*RKGWLKPRPRC
Trigger: ACAGCGAGGCCGAGGCTTGAGCCACCCCTTCCTTCAGAAGAGGCAGTCAGAAGGACACAGACCTGTGTGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp CTCGAGCTGCTGCTCCTGGAGCTGAGGTGTCATCTGTaGTTGCAGTGGCACCTTCATGTGGGTGGCTCAGTG +
Preference number: 3 (lower is better)
Translates to: LELLLLELRCHL*LQWHLHVGGSV
Trigger: CACTGAGCCACCCACATGAAGGTGCCACTGCAACCACAGATGACACCTCAGCTCCAGGAGCAGCAGCTCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp GACTGCAGCCGGGAGAGCAGCACTGGGGGTATGTCCTaGAGTCAGCTAGTCAGGGTCTGTCTGTCTGTCCTT +
Preference number: 3 (lower is better)
Translates to: DCSRESSTGGMS*SQLVRVCLSVL
Trigger: AAGGACAGACAGACAGACCCTGACTAGCTGACTCCAGGACATACCCCCAGTGCTGCTCTCCCGGCTGCAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp TATGTGGCATTGCCCTCCCATCTCAGCCAGAGGGGCTaGGTTAAAGCTGGCAAGAGCTCTGCCTGCCATGGG +
Preference number: 3 (lower is better)
Translates to: YVALPSHLSQRG*VKAGKSSACHG
Trigger: CCCATGGCAGGCAGAGCTCTTGCCAGCTTTAACCCAGCCCCTCTGGCTGAGATGGGAGGGCAATGCCACATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp CACCACACCCCTAACTCGAGCTGCTGCTCCTGGAGCTaGGGTGTCATCTGTGGTTGCAGTGGCACCTTCATG +
Preference number: 3 (lower is better)
Translates to: HHTPNSSCCSWS*GVICGCSGTFM
Trigger: CATGAAGGTGCCACTGCAACCACAGATGACACCTCAGCTCCAGGAGCAGCAGCTCGAGTTAGGGGTGTGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp GGGTTAAAGCTGGCAAGAGCTCTGCCTGCCATGGGATaGGAGCTACAGTTCCTGGTGCCAAGGCTAGCCCTG +
Preference number: 3 (lower is better)
Translates to: GLKLARALPAMG*ELQFLVPRLAL
Trigger: CAGGGCTAGCCTTGGCACCAGGAACTGTAGCTCTCATCCCATGGCAGGCAGAGCTCTTGCCAGCTTTAACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp AGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTaGAGCCGGGAGAGCAGCACTGGGGGTATGTCCTGG +
Preference number: 3 (lower is better)
Translates to: SKHTSQSQRSGD*SRESSTGGMSW
Trigger: CCAGGACATACCCCCAGTGCTGCTCTCCCGGCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp ATTCTTCACCATGGACCTCTCGGCTTACTCGGGCACTaGCGGCCAGTCCACCTCATTGGTTCGTCCCCTGAA +
Preference number: 3 (lower is better)
Translates to: ILHHGPLGLLGH*RPVHLIGSSPE
Trigger: TTCAGGGGACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCATGGTGAAGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp CTGCTCCTGGAGCTGAGGTGTCATCTGTGGTTGCAGTaGCACCTTCATGTGGGTGGCTCAGTGGGGACAGTT +
Preference number: 3 (lower is better)
Translates to: LLLELRCHLWLQ*HLHVGGSVGTV
Trigger: AACTGTCCCCACTGAGCCACCCACATGAAGGTGCCACTGCAACCACAGATGACACCTCAGCTCCAGGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp ATGACAGACAGCCTTCCCATTGGCATGGAGGAAGTCTaGTCCTTGCCCCTCACCCTTCAGCTGCTCTCTCCT +
Preference number: 3 (lower is better)
Translates to: MTDSLPIGMEEV*SLPLTLQLLSP
Trigger: AGGAGAGAGCAGCTGAAGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCCAATGGGAAGGCTGTCTGTCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp CTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTaGCCGAGAAGTGTTGAGGATGGTGGAGACGGGTCA +
Preference number: 3 (lower is better)
Translates to: LPQPVSTVQVVI*PRSVEDGGDGS
Trigger: TGACCCGTCTCCACCATCCTCAACACTTCTCGGGCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp CAGGAGAAACTGAGCCATGACAGACAGCCTTCCCATTaGCATGGAGGAAGTCTGCTCCTTGCCCCTCACCCT +
Preference number: 3 (lower is better)
Translates to: QEKLSHDRQPSH*HGGSLLLAPHP
Trigger: AGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCCAATGGGAAGGCTGTCTGTCATGGCTCAGTTTCTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp CTTCCCATTGGCATGGAGGAAGTCTGCTCCTTGCCCCTCACCCTTCAGCTGCTCACTCTGTGCAGTGCTTaGGGAAGGGCCTCATTAGTA +
Preference number: 3 (lower is better)
Translates to: LPIGMEEVCSLPLTLQLLTLCSA*GRASLV
Trigger: TACTAATGAGGCCCTTCCCAAAGCACTGCACAGAGT...GAGCAGCTGAAGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCCAATGGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp AGGCATAGCCAGAGCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACAGACAGCCTTCCCATaGGCATGGAGGAAGTCTGCT +
Preference number: 3 (lower is better)
Translates to: RHSQSRDLIQSWTREALPQTAFP*AWRKSA
Trigger: AGCAGACTTCCTCCATGCCAATGGGAAGGCTGTCTG...TGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGCTCTGGCTATGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp AGCAGGAATCATAGGGCATTGTCTCCCCTAGACCAGTaGGGCAAACCCAGGGATCTGTTCCTGGCAAGCCCA +
Preference number: 3 (lower is better)
Translates to: SRNHRALSPLDQ*GKPRDLFLASP
Trigger: TGGGCTTGCCAGGAACAGATCCCTGGGTTTGCCTCACTGGTCTAGGGGAGACAATGCCCTATGATTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp CTCACGGACAAAGCAGCAGAGGTGGATAAACAGCGCTaGGATACAGCAGGCAAGGGCCACAAGCAAACGATC +
Preference number: 3 (lower is better)
Translates to: LTDKAAEVDKQR*DTAGKGHKQTI
Trigger: GATCGTTTGCTTGTGGCCCTTGCCTGCTGTATCCCAGCGCTGTTTATCCACCTCTGCTGCTTTGTCCGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp GTCTTGCTCTATTCCTCACGGACAAAGCAGCAGAGGTaGATAAACAGCGCTGGGATACAGCAGGCAAGGGCC +
Preference number: 3 (lower is better)
Translates to: VLLYSSRTKQQR*INSAGIQQARA
Trigger: GGCCCTTGCCTGCTGTATCCCAGCGCTGTTTATCCACCTCTGCTGCTTTGTCCGTGAGGAATAGAGCAAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp TTATGTGGTGCTAGCATCAGACTCTGGGCTTTATGCTTGCTAGGCAAGCACCCTGAGGAAGTCTGCTCCTaGCCCCTCACCCTTCAGCTG +
Preference number: 3 (lower is better)
Translates to: LCGASIRLWALCLLGKHPEEVCS*PLTLQL
Trigger: CAGCTGAAGGGTGAGGGGCAAGGAGCAGACTTCCTC...AGGGTGCTTGCCTAGCAAGCATAAAGCCCAGAGTCTGATGCTAGCACCACATAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp ACAGGCATGAGCCCCAAACATGATCTGCAGTGGAGATaGAATGGGAATGGGACCACCCACTTCCCAGGGATG +
Preference number: 3 (lower is better)
Translates to: TGMSPKHDLQWR*NGNGTTHFPGM
Trigger: CATCCCTGGGAAGTGGGTGGTCCCATTCCCATTTCATCTCCACTGCAGATCATGTTTGGGGCTCATGCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp GGCCACAAGCAAACGATCCAGTCAGTCCCTAAGCACTaGTCACACACTAGGGCAGTAAAAGCTCCTGAAGCC +
Preference number: 3 (lower is better)
Translates to: GHKQTIQSVPKH*SHTRAVKAPEA
Trigger: GGCTTCAGGAGCTTTTACTGCCCTAGTGTGTGAGCAGTGCTTAGGGACTGACTGGATCGTTTGCTTGTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp AGGATGTTTCACTGTGATGCATCTGACACAGCGCTCTaGTTTGGCTATGTAGTACCGCAGCAGCCCTGCCCT +
Preference number: 3 (lower is better)
Translates to: RMFHCDASDTAL*FGYVVPQQPCP
Trigger: AGGGCAGGGCTGCTGCGGTACTACATAGCCAAAGCAGAGCGCTGTGTCAGATGCATCACAGTGAAACATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp GATGAAATGGGAATGGGACCACCCACTTCCCAGGGATaGACACGTGCCGCAAAGCTGATTCTTGAGCAGTTC +
Preference number: 3 (lower is better)
Translates to: DEMGMGPPTSQG*TRAAKLILEQF
Trigger: GAACTGCTCAAGAATCAGCTTTGCGGCACGTGTGCATCCCTGGGAAGTGGGTGGTCCCATTCCCATTTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp GGGGACTCACAACAGAGACAGACATGCTTGCTCTCCTaGTTGGCTGATGACTTACCCTGTCTCCTCTACCCA +
Preference number: 3 (lower is better)
Translates to: GDSQQRQTCLLS*LADDLPCLLYP
Trigger: TGGGTAGAGGAGACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp GCTCCCTACCCTGAAATTCACACTGGTGCTGCTGTCTaGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAA +
Preference number: 3 (lower is better)
Translates to: APYPEIHTGAAV*CSSRHAETSTE
Trigger: TTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCAGTGTGAATTTCAGGGTAGGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp ACTAGGGCAGTAAAAGCTCCTGAAGCCTGTGGGCACTaGTGTTCTAGGGGCAAGAACGAAGCTTCATGCCAC +
Preference number: 3 (lower is better)
Translates to: TRAVKAPEACGH*CSRGKNEASCH
Trigger: GTGGCATGAAGCTTCGTTCTTGCCCCTAGAACATCAGTGCCCACAGGCTTCAGGAGCTTTTACTGCCCTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp AATCCAGCACGTCGTCCCTATCAGGATGAGCCACTCTaGTTTCTTCCATGTCTGATGTCTGGCAGGCCCACT +
Preference number: 3 (lower is better)
Translates to: NPARRPYQDEPL*FLPCLMSGRPT
Trigger: AGTGGGCCTGCCAGACATCAGACATGGAAGAAATCAGAGTGGCTCATCCTGATAGGGACGACGTGCTGGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp TCAGGCCTAGAATTTACCCTGGGATTACAGATACTCTaGAGAGGCAGGCTGGAGGCCTGGTGGCACACACTT +
Preference number: 3 (lower is better)
Translates to: SGLEFTLGLQIL*RGRLEAWWHTL
Trigger: AAGTGTGTGCCACCAGGCCTCCAGCCTGCCTCTTCAGAGTATCTGTAATCCCAGGGTAAATTCTAGGCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp TCCCTCTGTGTTGTAGCAATAGGCTGTGTAGTGTCCTaGGCCAAACCCTTTCCCGTGATGCATGACCACTGC +
Preference number: 3 (lower is better)
Translates to: SLCVVAIGCVVS*AKPFPVMHDHC
Trigger: GCAGTGGTCATGCATCACGGGAAAGGGTTTGGCTCAGGACACTACACAGCCTATTGCTACAACACAGAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
3UTR CCA 72 bp TTACCCTGGGATTACAGATACTCTGAAGAGGCAGGCTaGAGGCCTGGTGGCACACACTTAATCCCAGAAGCT +
Preference number: 3 (lower is better)
Translates to: LPWDYRYSEEAG*RPGGTHLIPEA
Trigger: AGCTTCTGGGATTAAGTGTGTGCCACCAGGCCTCCAGCCTGCCTCTTCAGAGTATCTGTAATCCCAGGGTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCAGAAACCTCACAGTGTaGTTTGAATCCAGCACGTCG +
Preference number: 3 (lower is better)
Translates to: LESHYLPQPVSTVQVVICRNLTV*FESSTS
Trigger: CGACGTGCTGGATTCAAACAACACTGTGAGGTTTCT...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCCATGTGCGCATTGTTTaGACACTGCTTCCTGATGGT +
Preference number: 3 (lower is better)
Translates to: LESHYLPQPVSTVQVVICHVRIV*TLLPDG
Trigger: ACCATCAGGAAGCAGTGTCAAAACAATGCGCACATG...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTGGACAAAGCTTGGGTTaGAAGCCATTACTTGCAGAG +
Preference number: 3 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTGQSLG*KPLLAE
Trigger: CTCTGCAAGTAATGGCTTCAAACCCAAGCTTTGTCC...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp TTAGAGGCGACCACAAGCATGAGGGCCAGGCTAGACTaGGGTAAGAAGTCATTTTTGAGGGCTGGGGTGAAT +
Preference number: 3 (lower is better)
Translates to: LEATTSMRARLD*GKKSFLRAGVN
Trigger: ATTCACCCCAGCCCTCAAAAATGACTTCTTACCTCAGTCTAGCCTGGCCCTCATGCTTGTGGTCGCCTCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp GCCTCATTAGTAGGGGACTCACAACAGAGACAGACATaGTTGCTCTCCTGGTTGGCTGATGACTTACCCTGT +
Preference number: 3 (lower is better)
Translates to: ASLVGDSQQRQT*LLSWLADDLPC
Trigger: ACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGTCCCCTACTAATGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp ACCAAAAGAGAGCATTCACGGGAGGCTGTGGGGCACTaGAGTAGCCACTGCAAAGAGAAAGAAGCTTACTGT +
Preference number: 3 (lower is better)
Translates to: TKREHSREAVGH*SSHCKEKEAYC
Trigger: ACAGTAAGCTTCTTTCTCTTTGCAGTGGCTACTGCAGTGCCCCACAGCCTCCCGTGAATGCTCTCTTTTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp ATTTTATGTGGTGCTAGCATCAGACTCTGGGCTTTATaGTTGCTAGGCAAGCACCCTACTGAGCCACGTGCC +
Preference number: 3 (lower is better)
Translates to: ILCGASIRLWAL*LLGKHPTEPRA
Trigger: GGCACGTGGCTCAGTAGGGTGCTTGCCTAGCAAGCATAAAGCCCAGAGTCTGATGCTAGCACCACATAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp ACTCACAACAGAGACAGACATGCTTGCTCTCCTGGTTaGCTGATGACTTACCCTGTCTCCTCTACCCAGATC +
Preference number: 3 (lower is better)
Translates to: THNRDRHACSPG*LMTYPVSSTQI
Trigger: GATCTGGGTAGAGGAGACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp GCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTGAACAAAAAGCTCAGTGGGGACAGTaGGTTTCACTTCTGACTAAG +
Preference number: 3 (lower is better)
Translates to: AGTSYNHGLERPCHCEQKAQWGQ*VSLLTK
Trigger: CTTAGTCAGAAGTGAAACCAACTGTCCCCACTGAGC...TTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTACTCGAGGACAAAGCTaGGGTTTGAAGCCATTACTT +
Preference number: 3 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTTRGQS*GLKPLL
Trigger: AAGTAATGGCTTCAAACCCAAGCTTTGTCCTCGAGT...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp GTGCGCATTGTTTTGACACTGCTTCCTGATGGTTCATaGAGAAGGACCCCAGTGTTAACGCAGACTCTACTG +
Preference number: 3 (lower is better)
Translates to: VRIVLTLLPDGS*RRTPVLTQTLL
Trigger: CAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGGAAGCAGTGTCAAAACAATGCGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp CTGATTTCTTCCATGTCTGATGTCTGGCAGGCCCACTaGGAGCTCACCTCAAAGGAGAACAGCAGTAAATAC +
Preference number: 3 (lower is better)
Translates to: LISSMSDVWQAH*ELTSKENSSKY
Trigger: GTATTTACTGCTGTTCTCCTTTGAGGTGAGCTCTCAGTGGGCCTGCCAGACATCAGACATGGAAGAAATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp GTGTTGTTTGAATCCAGCACGTCGTCCCTATCAGGATaGGCCACTCTGATTTCTTCCATGTCTGATGTCTGG +
Preference number: 3 (lower is better)
Translates to: VLFESSTSSLSG*ATLISSMSDVW
Trigger: CCAGACATCAGACATGGAAGAAATCAGAGTGGCTCATCCTGATAGGGACGACGTGCTGGATTCAAACAACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp AGGTTCACATGTGCGCATTGTTTTGACACTGCTTCCTaGTGGTTCATGCAGAAGGACCCCAGTGTTAACGCA +
Preference number: 3 (lower is better)
Translates to: RFTCAHCFDTAS*WFMQKDPSVNA
Trigger: TGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGGAAGCAGTGTCAAAACAATGCGCACATGTGAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp AGTCTCACAAGTTCAACAGAAACTTCAAGCTTGGAGTaGAAGAACTGGCTGGGACTGGCCCTGACGAACACA +
Preference number: 3 (lower is better)
Translates to: SLTSSTETSSLE*KNWLGLALTNT
Trigger: TGTGTTCGTCAGGGCCAGTCCCAGCCAGTTCTTTCACTCCAAGCTTGAAGTTTCTGTTGAACTTGTGAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CCA 72 bp AAAAGGAAAAAGACAAAGCAGCTTTCCTGGACCTGCTaGCACATAGCTCATCCAGTCAGTTCTCTGAGGCCT +
Preference number: 3 (lower is better)
Translates to: KRKKTKQLSWTC*HIAHPVSSLRP
Trigger: AGGCCTCAGAGAACTGACTGGATGAGCTATGTGCCAGCAGGTCCAGGAAAGCTGCTTTGTCTTTTTCCTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTTGCTTGCTCTCCTGGTaGGCTGATGACTTACCCTGT +
Preference number: 3 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGCLLSW*ADDLPC
Trigger: ACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCA...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGCTGTCTGTCTGTCCTTaGTTTTTAGGATGTTTCACT +
Preference number: 3 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLLSVCP*FLGCFT
Trigger: AGTGAAACATCCTAAAAACAAAGGACAGACAGACAG...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp AGGATGGTGGAGACGGGTCATTTCTCCATGATTCACTaGATAGTACACAGTGGCTTGTCTTACAGTCTGAAG +
Preference number: 3 (lower is better)
Translates to: RMVETGHFSMIH*IVHSGLSYSLK
Trigger: CTTCAGACTGTAAGACAAGCCACTGTGTACTATGCAGTGAATCATGGAGAAATGACCCGTCTCCACCATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp CAAAGGTCTCTTTGTCAAGAGAGGAGAGCATGTCCCTaGAGCAGTAAGGTTCCATGGTTAATACCTGGTCAA +
Preference number: 3 (lower is better)
Translates to: QRSLCQERRACP*SSKVPWLIPGQ
Trigger: TTGACCAGGTATTAACCATGGAACCTTACTGCTGCAGGGACATGCTCTCCTCTCTTGACAAAGAGACCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
3UTR TCA 72 bp GCAGACTCTACTGCCATTGGTCACCTAGCTTCATCGTaGTTTAGAGAAAGCCTTTTCTCATCATTTGTGCTC +
Preference number: 3 (lower is better)
Translates to: ADSTAIGHLASS*FRESLFSSFVL
Trigger: GAGCACAAATGATGAGAAAAGGCTTTCTCTAAATCACGATGAAGCTAGGTGACCAATGGCAGTAGAGTCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp GATCACAGGTACAGGTTAGGATTCAAGGCTTTACTATaGCTGATTTTATGTGGTGCTAGCATCAGACTCTGG +
Preference number: 3 (lower is better)
Translates to: DHRYRLGFKALL*LILCGASIRLW
Trigger: CCAGAGTCTGATGCTAGCACCACATAAAATCAGGCATAGTAAAGCCTTGAATCCTAACCTGTACCTGTGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp TCTCCTCTACCCAGATCCCTGTTATCCAGAAGCAACTaGCAAAAGGATCTTCATAGAAGCTGCTCCTTTATA +
Preference number: 3 (lower is better)
Translates to: SPLPRSLLSRSN*QKDLHRSCSFI
Trigger: TATAAAGGAGCAGCTTCTATGAAGATCCTTTTGTCAGTTGCTTCTGGATAACAGGGATCTGGGTAGAGGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp TGTGGGTGGCTCAGTGGGGACAGTTGGTTTCACTTCTaGCTAAGTAATTTTACTAATCTCATATGTAGGTGT +
Preference number: 3 (lower is better)
Translates to: CGWLSGDSWFHF*LSNFTNLICRC
Trigger: ACACCTACATATGAGATTAGTAAAATTACTTAGTCAGAAGTGAAACCAACTGTCCCCACTGAGCCACCCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR GCA 72 bp CTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTaGAATCCAGTCCTTTTCACTAGTTTGCTAGTTTTG +
Preference number: 3 (lower is better)
Translates to: LSGINNTGFQVR*NPVLFTSLLVL
Trigger: CAAAACTAGCAAACTAGTGAAAAGGACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCACTAGTTTGCTAGTTTaGTTTTTCAAACAGGGCCTC +
Preference number: 3 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSTSLLV*FFKQGL
Trigger: GAGGCCCTGTTTGAAAAACAAAACTAGCAAACTAGT...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR-3UTR CAA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTCAAGTAACTTTACTGTaGTTCTTTGACGCCATGATG +
Preference number: 3 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGQVTLL*FFDAMM
Trigger: CATCATGGCGTCAAAGAACAACAGTAAAGTTACTTG...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp GCGTATGCTTTGCATGGTAAATTCATGAACACTTGGTaGAGTCTCACAAGTTCAACAGAAACTTCAAGCTTG +
Preference number: 3 (lower is better)
Translates to: AYALHGKFMNTW*SLTSSTETSSL
Trigger: CAAGCTTGAAGTTTCTGTTGAACTTGTGAGACTTCACCAAGTGTTCATGAATTTACCATGCAAAGCATACGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp GATCTTCATAGAAGCTGCTCCTTTATAGTGTTTTTATaGGAGAAGGGGATTTGCATGGTTTCACAAGAAAGT +
Preference number: 3 (lower is better)
Translates to: DLHRSCSFIVFL*EKGICMVSQES
Trigger: ACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAAACACTATAAAGGAGCAGCTTCTATGAAGATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR TCA 72 bp GAGCAGTTAATGACAAGATTTAAGTTAAAAGCCAGATaGGACAAAAACTTAAGACATGACAGCTTTCAGAGC +
Preference number: 3 (lower is better)
Translates to: EQLMTRFKLKAR*DKNLRHDSFQS
Trigger: GCTCTGAAAGCTGTCATGTCTTAAGTTTTTGTCTCATCTGGCTTTTAACTTAAATCTTGTCATTAACTGCTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp CTTCCCATTGGCATGGAGGAAGTCTGCTCCTTGCCCCTCACCCTTCAGCTGCTCCTGAGGAGTGCGCTGTaGCGGGACCACGTCCTCGCC +
Preference number: 4 (lower is better)
Translates to: LPIGMEEVCSLPLTLQLLLRSAL*RDHVLA
Trigger: GGCGAGGACGTGGTCCCGCCACAGCGCACTCCTCAG...GAGCAGCTGAAGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCCAATGGGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCCTCCAGCAGAGGCCCTaGGGTTCGCAGCCCTGGGCC +
Preference number: 4 (lower is better)
Translates to: LESHYLPQPVSTVQVVICLQQRP*GSQPWA
Trigger: GGCCCAGGGCTGCGAACCTCAGGGCCTCTGCTGGAG...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CAA 72 bp GAGCTGCTGCTCCTGGAGCTGAGGTGTCATCTGTGGTaGCAGTGGCACCTTCATGTGGGTGGCTCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: ELLLLELRCHLW*QWHLHVGGSVG
Trigger: CCCCACTGAGCCACCCACATGAAGGTGCCACTGCAACCACAGATGACACCTCAGCTCCAGGAGCAGCAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTCCTCGCCCGCAGCTGTaGACCGCAGCGTCCGCCCAC +
Preference number: 4 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFPRPQL*TAASAH
Trigger: GTGGGCGGACGCTGCGGTCCACAGCTGCGGGCGAGG...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp AGGCATAGCCAGAGCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCAGGTACCACAGAGCCGTaGGCATCTGCGGCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: RHSQSRDLIQSWTREALPGTTEP*ASAAVP
Trigger: AGGGACAGCCGCAGATGCTCACGGCTCTGTGGTACC...TGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGCTCTGGCTATGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTGCTGGCGGCGCGGATTaGGGGCAGCTGCGGACAAGC +
Preference number: 4 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFAGGAD*GQLRTS
Trigger: GCTTGTCCGCAGCTGCCCTCAATCCGCGCCGCCAGC...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTCGGCCGCAGGCCACGTaGGAGCACTTGAGGCAGGCC +
Preference number: 4 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFRPQAT*EHLRQA
Trigger: GGCCTGCCTCAAGTGCTCCCACGTGGCCTGCGGCCG...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGTTGGCCAGCAGGCGCTaGCGCCGGTACCACAGAGCC +
Preference number: 4 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLLASRR*RRYHRA
Trigger: GGCTCTGTGGTACCGGCGCCAGCGCCTGCTGGCCAA...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp ATGGACCTCTCGGCTTACTCGGGCACTGCCGGCCAGTCCACCTCATTGGTTCGTTTCCCGTTGGTTGCTTaGGGAAACAGGTGCTCGGAG +
Preference number: 4 (lower is better)
Translates to: MDLSAYSGTAGQSTSLVRFPLVA*GNRCSE
Trigger: CTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAA...ACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp CAAAGGAGAACAGCAGTAAATACCACAGATGTGCCTGAAGTGTGGCCATGCCTCGCTCCAGGCTCCTGCTaGTGGAGGCTCCGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: QRRTAVNTTDVPEVWPCLAPGSC*WRLRCS
Trigger: GGAGCAGCGGAGCCTCCATCAGCAGGAGCCTGGAGC...GAGGCATGGCCACACTTCAGGCACATCTGTGGTATTTACTGCTGTTCTCCTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp CAAAGGAGAACAGCAGTAAATACCACAGATGTGCCTGAAGTGTGGCCATGCCTCGCGCCGCCTCCTTCTTaGGCTCCAGCGCCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: QRRTAVNTTDVPEVWPCLAPPPS*APAPPP
Trigger: AGGAGGAGGCGCTGGAGCGCAAGAAGGAGGCGGCGC...GAGGCATGGCCACACTTCAGGCACATCTGTGGTATTTACTGCTGTTCTCCTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGCCGCGGGAGCTCTTCTaGAACCAGAGCCGCAGCGTC +
Preference number: 4 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLPRELF*NQSRSV
Trigger: GACGCTGCGGCTCTGGTTCCAGAAGAGCTCCCGCGG...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTCCACGTGGGAGCACTTaGGGCAGGCCCACGCAGACT +
Preference number: 4 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFPRGST*GRPTQT
Trigger: AGTCTGCGTGGGCCTGCCTCAAGTGCTCCCACGTGG...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCGGTTGCGCAGGCCGGTaGCACCTGGGGCCACCGCCG +
Preference number: 4 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSGCAGR*HLGPPP
Trigger: CGGCGGTGGCCCCAGGTGTCACCGGCCTGCGCAACC...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp AGGCATAGCCAGAGCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGCTGGAGTGCACCTaGGCTTGGAGATGGGGTTCT +
Preference number: 4 (lower is better)
Translates to: RHSQSRDLIQSWTREALPLLECT*AWRWGS
Trigger: AGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAG...TGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGCTCTGGCTATGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp TGTACCAGGGAACCAGGTGGCGGTAGAGACGGGGTCTCCATAGTTTCATGTAGTGCTTGGGGAAACAGGTaGTCGGAGGTGGAAGGGTCG +
Preference number: 4 (lower is better)
Translates to: CTREPGGGRDGVSIVSCSAWGNR*SEVEGS
Trigger: CGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGC...ACTACATGAAACTATGGAGACCCCGTCTCTACCGCCACCTGGTTCCCTGGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp ATGGACCTCTCGGCTTACTCGGGCACTGCCGGCCAGTCCACCTCATTGGTTCGTTCCTGCTGCACCTTGTaGAGCAGTTCGCAGAGAAAT +
Preference number: 4 (lower is better)
Translates to: MDLSAYSGTAGQSTSLVRSCCTL*SSSQRN
Trigger: ATTTCTCTGCGAACTGCTGCACAAGGTGCAGCAGGA...ACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp TTATGTGGTGCTAGCATCAGACTCTGGGCTTTATGCTTGCTAGGCAAGCACCCTGGTCCCGGACCTCCATaGCCAGCGGGTGTCCTGTCT +
Preference number: 4 (lower is better)
Translates to: LCGASIRLWALCLLGKHPGPGPP*PAGVLS
Trigger: AGACAGGACACCCGCTGGCCATGGAGGTCCGGGACC...AGGGTGCTTGCCTAGCAAGCATAAAGCCCAGAGTCTGATGCTAGCACCACATAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp ATGGACCTCTCGGCTTACTCGGGCACTGCCGGCCAGTCCACCTCATTGGTTCGTCAAGGGGTTTGGGGTTaGACTTTCGTCGTTTGCTGT +
Preference number: 4 (lower is better)
Translates to: MDLSAYSGTAGQSTSLVRQGVWG*TFVVCC
Trigger: ACAGCAAACGACGAAAGTCCAACCCCAAACCCCTTG...ACGAACCAATGAGGTGGACTGGCCGGCAGTGCCCGAGTAAGCCGAGAGGTCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTGGGCCTCTGTCTCGGTaGACTTGGCTAGCATCTCAG +
Preference number: 4 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTGPLSR*TWLASQ
Trigger: CTGAGATGCTAGCCAAGTTCACCGAGACAGAGGCCC...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCACCTCGCGGCGCCGCTaGCGCGCCGCCTCCTTCTTG +
Preference number: 4 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSTSRRR*RAASFL
Trigger: CAAGAAGGAGGCGGCGCGGCAGCGGCGCCGCGAGGT...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTGAACAAAAAAGGATGGAGTGGTCCTaGGCGAGCCGTAACCGCCCT +
Preference number: 4 (lower is better)
Translates to: AGTSYNHGLERPCHCEQKRMEWS*ASRNRP
Trigger: AGGGCGGTTACGGCTCGCCCAGGACCACTCCATCCT...TTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGC
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTTCCGCGGCGGCGCACTaGCCAGCTCCTCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGSAAAH*PAPPAA
Trigger: GGCTGCTGGAGGAGCTGGCCAGTGCGCCGCCGCGGA...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CAA 72 bp CTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTaGTCATCTGCCCGAGAAGTGTTGAGGATGGTGGAG +
Preference number: 4 (lower is better)
Translates to: LTTFLSQSALSR*SSAREVLRMVE
Trigger: CTCCACCATCCTCAACACTTCTCGGGCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCCTGGGTTCCTTGTTCTaGATGAGCTCCAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: LESHYLPQPVSTVQVVICLGSLF*MSSRLL
Trigger: CAGGAGCCTGGAGCTCATTCAGAACAAGGAACCCAG...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCACTTCCCAGACCACATaGCTCGGAAGAGGGTGTGCA +
Preference number: 4 (lower is better)
Translates to: LESHYLPQPVSTVQVVICTSQTT*LGRGCA
Trigger: TGCACACCCTCTTCCGAGTCATGTGGTCTGGGAAGT...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCTCGGTGGTGGCGCACTaGAGACAGCACCACTTCTGG +
Preference number: 4 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSSVVAH*RQHHFW
Trigger: CCAGAAGTGGTGCTGTCTGCAGTGCGCCACCACCGA...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGCTTCTGGCCTCGAACTaGCAGGAGGGAGCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLLLASN*QEGASQ
Trigger: CTGAGAAGCTCCCTCCTGGCAGTTCGAGGCCAGAAG...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp TGTACCAGGGAACCAGGTGGCGGTAGAGACGGGGTCTCCATAGTTTCATGTAGTACTCGGAAGAGGGTGTaGAGTTCGTGGCAGAGGGAA +
Preference number: 4 (lower is better)
Translates to: CTREPGGGRDGVSIVSCSTRKRV*SSWQRE
Trigger: TTCCCTCTGCCACGAACTGCACACCCTCTTCCGAGT...ACTACATGAAACTATGGAGACCCCGTCTCTACCGCCACCTGGTTCCCTGGTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp CTTCCCATTGGCATGGAGGAAGTCTGCTCCTTGCCCCTCACCCTTCAGCTGCTCCCAGCTTTGAGTCATTaGAGTGGACCCAAAAACCTC +
Preference number: 4 (lower is better)
Translates to: LPIGMEEVCSLPLTLQLLPALSH*SGPKNL
Trigger: GAGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGG...GAGCAGCTGAAGGGTGAGGGGCAAGGAGCAGACTTCCTCCATGCCAATGGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GAGGAGCCTGAGCAAAGCTCACAGAAAAGCCTGCCACAGACAGTAAAAACCAAAACGCAGACTCGGTGGTaGCGCACTGCAGACAGCACC +
Preference number: 4 (lower is better)
Translates to: EEPEQSSQKSLPQTVKTKTQTRW*RTADST
Trigger: GGTGCTGTCTGCAGTGCGCCACCACCGAGTCTGCGT...TTTGGTTTTTACTGTCTGTGGCAGGCTTTTCTGTGAGCTTTGCTCAGGCTCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTCATTCCCGGAACTTCTaGAGGTGGCTGAGCACTTGG +
Preference number: 4 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTHSRNF*RWLSTW
Trigger: CCAAGTGCTCAGCCACCTCCAGAAGTTCCGGGAATG...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCGTTCGTCCTTGCTGCTaGAGTGCACCTGAGCTTGGA +
Preference number: 4 (lower is better)
Translates to: LESHYLPQPVSTVQVVICVRPCC*SAPELG
Trigger: TCCAAGCTCAGGTGCACTCCAGCAGCAAGGACGAAC...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTATCTGCGGCTGTCCCTaGGGAGTGCGCTGTGGCGGG +
Preference number: 4 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGICGCP*GVRCGG
Trigger: CCCGCCACAGCGCACTCCTCAGGGACAGCCGCAGAT...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp AGGCATAGCCAGAGCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCAGAGGGAAATGTGCTTTaGGCTGGGTTCCTTGTTCTG +
Preference number: 4 (lower is better)
Translates to: RHSQSRDLIQSWTREALPEGNVL*AGFLVL
Trigger: CAGAACAAGGAACCCAGCTCAAAGCACATTTCCCTC...TGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGCTCTGGCTATGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TGTACCAGGGAACCAGGTGGCGGTAGAGACGGGGTCTCCATAGTTTCATGTAGTCTGAGCAGCTGCCCATaGAATATGGTGTTCACCACC +
Preference number: 4 (lower is better)
Translates to: CTREPGGGRDGVSIVSCSLSSCP*NMVFTT
Trigger: GGTGGTGAACACCATATTTCATGGGCAGCTGCTCAG...ACTACATGAAACTATGGAGACCCCGTCTCTACCGCCACCTGGTTCCCTGGTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TCACGATGGTTACGGCCAGACCACCTGAATCTTTTAAGGTGTAGCCGGAGGACCCTGAGCAGCTGCCCATaGAATATGGTGTTCACCACC +
Preference number: 4 (lower is better)
Translates to: SRWLRPDHLNLLRCSRRTLSSCP*NMVFTT
Trigger: GGTGGTGAACACCATATTTCATGGGCAGCTGCTCAG...GGTCCTCCGGCTACACCTTAAAAGATTCAGGTGGTCTGGCCGTAACCATCGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR TCA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCTGGCTAGCATCTCAGTaGGCAGGCACTCTGTCTGAT +
Preference number: 4 (lower is better)
Translates to: LESHYLPQPVSTVQVVICWLASQ*AGTLSD
Trigger: ATCAGACAGAGTGCCTGCTCACTGAGATGCTAGCCA...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp GCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTGAACAAAAACCAAACCCTTTCCCGTaGTGCATGACCACTGCGGAG +
Preference number: 4 (lower is better)
Translates to: AGTSYNHGLERPCHCEQKPNPFP*CMTTAE
Trigger: CTCCGCAGTGGTCATGCATCACGGGAAAGGGTTTGG...TTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp GAGCAGTTCCTACTGCTGAGTCTTCCTGTAGGAAGAAGGTGGTGGTTGTCGTTTGGCTGTGTAGTGTCCTaGGCCAAACCCTTTCCCGTG +
Preference number: 4 (lower is better)
Translates to: EQFLLLSLPVGRRWWLSFGCVVS*AKPFPV
Trigger: CACGGGAAAGGGTTTGGCTCAGGACACTACACAGCC...AAACGACAACCACCACCTTCTTCCTACAGGAAGACTCAGCAGTAGGAACTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTGAACAAAAAGGATTCAGGATGGAGTaGTCCTGGGCGAGCCGTAAC +
Preference number: 4 (lower is better)
Translates to: AGTSYNHGLERPCHCEQKGFRME*SWASRN
Trigger: GTTACGGCTCGCCCAGGACCACTCCATCCTGAATCC...TTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp TCACGATGGTTACGGCCAGACCACCTGAATCTTTTAAGGTGTAGCCGGAGGACCCAAGGGGTTTGGGGTTaGACTTTCGTCGTTTGCCTG +
Preference number: 4 (lower is better)
Translates to: SRWLRPDHLNLLRCSRRTQGVWG*TFVVCL
Trigger: CAGGCAAACGACGAAAGTCCAACCCCAAACCCCTTG...GGTCCTCCGGCTACACCTTAAAAGATTCAGGTGGTCTGGCCGTAACCATCGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR TCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCCCTCCGGGTTGTCATTaGGCACGTAGTCCTTGCACA +
Preference number: 4 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSPPGCH*ARSPCT
Trigger: TGTGCAAGGACTACGTGCTCAATGACAACCCGGAGG...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGGTTGCGCAGGCCGGTaGCACCTGGGGCCACCGCCG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFGCAGR*HLGPPP
Trigger: CGGCGGTGGCCCCAGGTGTCACCGGCCTGCGCAACC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp GCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTGAACAAAAAAGGCTCCACACGGAGTaGAGCATGGCAAAGGGTGAT +
Preference number: 4 (lower is better)
Translates to: AGTSYNHGLERPCHCEQKRLHTE*SMAKGD
Trigger: ATCACCCTTTGCCATGCTTCACTCCGTGTGGAGCCT...TTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCTCTGGGAGAATGGGATaGGGATCCTGCGTGTGGAAC +
Preference number: 4 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSSGRMG*GSCVWN
Trigger: GTTCCACACGCAGGATCCTCATCCCATTCTCCCAGA...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp CATTGCAGTGGACCCAAAAACCTCCCTCTGTGTTGTAGCAATAGGCTGTGTAGTTCTGGGAGAATGGGATaGGGATCCTGCGTGTGGAAC +
Preference number: 4 (lower is better)
Translates to: HCSGPKNLPLCCSNRLCSSGRMG*GSCVWN
Trigger: GTTCCACACGCAGGATCCTCATCCCATTCTCCCAGA...ACTACACAGCCTATTGCTACAACACAGAGGGAGGTTTTTGGGTCCACTGCAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR TCA 90 bp AGGCAAAGGTCTCTTTGTCAAGAGAGGAGAGCATGTCCCTGCAGCAGTAAGGTTCGTCGTTTGCCTGACTaGGCAGCTGCCCATGAAATA +
Preference number: 4 (lower is better)
Translates to: RQRSLCQERRACPCSSKVRRLPD*AAAHEI
Trigger: TATTTCATGGGCAGCTGCTCAGTCAGGCAAACGACG...AACCTTACTGCTGCAGGGACATGCTCTCCTCTCTTGACAAAGAGACCTTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR GCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCAGGAGAGCATGTCCCTaGAGCAGTAAGGTTCCATGG +
Preference number: 4 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSRRACP*SSKVPW
Trigger: CCATGGAACCTTACTGCTGCAGGGACATGCTCTCCT...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp TGTACCAGGGAACCAGGTGGCGGTAGAGACGGGGTCTCCATAGTTTCATGTAGTGTGATGCATGACCACTaGGGAGAGATCATAGGCAAA +
Preference number: 4 (lower is better)
Translates to: CTREPGGGRDGVSIVSCSVMHDH*GEIIGK
Trigger: TTTGCCTATGATCTCTCCGCAGTGGTCATGCATCAC...ACTACATGAAACTATGGAGACCCCGTCTCTACCGCCACCTGGTTCCCTGGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp GAGGAGCCTGAGCAAAGCTCACAGAAAAGCCTGCCACAGACAGTAAAAACCAAATTCTGCGTTCGTCCTTaGTGCTGGAGTGCACCTGAG +
Preference number: 4 (lower is better)
Translates to: EEPEQSSQKSLPQTVKTKFCVRP*CWSAPE
Trigger: CTCAGGTGCACTCCAGCAGCAAGGACGAACGCAGAA...TTTGGTTTTTACTGTCTGTGGCAGGCTTTTCTGTGAGCTTTGCTCAGGCTCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTCTGCGGCAGAGCTGCTaGCTGGCCTACCAGAGAGCT +
Preference number: 4 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGLRQSC*LAYQRA
Trigger: AGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCGCAG...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp CAAAGGAGAACAGCAGTAAATACCACAGATGTGCCTGAAGTGTGGCCATGCCTCCTTCCTCTGGGAGAATaGGATGAGGATCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: QRRTAVNTTDVPEVWPCLLPLGE*DEDPAC
Trigger: ACACGCAGGATCCTCATCCCATTCTCCCAGAGGAAG...GAGGCATGGCCACACTTCAGGCACATCTGTGGTATTTACTGCTGTTCTCCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp TCACGATGGTTACGGCCAGACCACCTGAATCTTTTAAGGTGTAGCCGGAGGACCTCAGAACAAGGGGTTTaGGGTTGGACTTTCGTCGTT +
Preference number: 4 (lower is better)
Translates to: SRWLRPDHLNLLRCSRRTSEQGV*GWTFVV
Trigger: AACGACGAAAGTCCAACCCCAAACCCCTTGTTCTGA...GGTCCTCCGGCTACACCTTAAAAGATTCAGGTGGTCTGGCCGTAACCATCGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR CCA 90 bp AGGCATAGCCAGAGCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCATTTGAGTCATTGCAGTaGACCCAAAAACCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: RHSQSRDLIQSWTREALPFESLQ*TQKPPS
Trigger: AGAGGGAGGTTTTTGGGTCCACTGCAATGACTCAAA...TGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGCTCTGGCTATGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CAA 72 bp GACTCACAACAGAGACAGACATGCTTGCTCTCCTGGTaGGCTGATGACTTACCCTGTCTCCTCTACCCAGAT +
Preference number: 4 (lower is better)
Translates to: DSQQRQTCLLSW*ADDLPCLLYPD
Trigger: ATCTGGGTAGAGGAGACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCTCCAGCAGAGGCCCTaGGGTTCGCAGCCCTGGGCC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLQQRP*GSQPWA
Trigger: GGCCCAGGGCTGCGAACCTCAGGGCCTCTGCTGGAG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCTCTGGGGATTCAGGATaGAGTGGTCCTGGGCGAGCC +
Preference number: 4 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVSGDSG*SGPGRA
Trigger: GGCTCGCCCAGGACCACTCCATCCTGAATCCCCAGA...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCAGGGTGTGCAGTTCGTaGCAGAGGGAAATGTGCTTT +
Preference number: 4 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSRVCSS*QREMCF
Trigger: AAAGCACATTTCCCTCTGCCACGAACTGCACACCCT...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp AAAGGTCTCTTTGTCAAGAGAGGAGAGCATGTCCCTGCAGCAGTAAGGTTCCATCTTCCTCTGGGAGAATaGGATGAGGATCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: KGLFVKRGEHVPAAVRFHLPLGE*DEDPAC
Trigger: ACACGCAGGATCCTCATCCCATTCTCCCAGAGGAAG...ATGGAACCTTACTGCTGCAGGGACATGCTCTCCTCTCTTGACAAAGAGACCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR CCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCTTGGTGAGCTTCCTCTaGGAGAATGGGATGAGGATC +
Preference number: 4 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSLVSFL*ENGMRI
Trigger: GATCCTCATCCCATTCTCCCAGAGGAAGCTCACCAA...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CAA 72 bp TCATTAGTAGGGGACTCACAACAGAGACAGACATGCTaGCTCTCCTGGTTGGCTGATGACTTACCCTGTCTC +
Preference number: 4 (lower is better)
Translates to: SLVGDSQQRQTC*LSWLADDLPCL
Trigger: GAGACAGGGTAAGTCATCAGCCAACCAGGAGAGCAAGCATGTCTGTCTCTGTTGTGAGTCCCCTACTAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGCTCCAGGCTCCTGCTaGTGGAGGCTCCGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFAPGSC*WRLRCS
Trigger: GGAGCAGCGGAGCCTCCATCAGCAGGAGCCTGGAGC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp GCAGGGACCTCATACAATCATGGACTCGAGAGGCCTTGCCACTGTGAACAAAAATTAAGACCTGTTTGGTaGGCTTCCTCTGGGAGAATG +
Preference number: 4 (lower is better)
Translates to: AGTSYNHGLERPCHCEQKLRPVW*ASSGRM
Trigger: CATTCTCCCAGAGGAAGCTCACCAAACAGGTCTTAA...TTTTTGTTCACAGTGGCAAGGCCTCTCGAGTCCATGATTGTATGAGGTCCCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGCAAACCCCTTTTCTATaGAGTGGTATCGTTCAGGGA +
Preference number: 4 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLQTPFL*SGIVQG
Trigger: TCCCTGAACGATACCACTGCATAGAAAAGGGGTTTG...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp AAAGGTCTCTTTGTCAAGAGAGGAGAGCATGTCCCTGCAGCAGTAAGGTTCCATTTGGTGAGCTTCCTCTaGGAGAATGGGATGAGGATC +
Preference number: 4 (lower is better)
Translates to: KGLFVKRGEHVPAAVRFHLVSFL*ENGMRI
Trigger: GATCCTCATCCCATTCTCCCAGAGGAAGCTCACCAA...ATGGAACCTTACTGCTGCAGGGACATGCTCTCCTCTCTTGACAAAGAGACCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR CCA 90 bp TGTACCAGGGAACCAGGTGGCGGTAGAGACGGGGTCTCCATAGTTTCATGTAGTGCTGCCCATGAAATATaGTGTTCACCACCTTTAAGA +
Preference number: 4 (lower is better)
Translates to: CTREPGGGRDGVSIVSCSAAHEI*CSPPLR
Trigger: TCTTAAAGGTGGTGAACACCATATTTCATGGGCAGC...ACTACATGAAACTATGGAGACCCCGTCTCTACCGCCACCTGGTTCCCTGGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCTCAGAACAAGGGGTTTaGGGTTGGACTTTCGTCGTT +
Preference number: 4 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSSEQGV*GWTFVV
Trigger: AACGACGAAAGTCCAACCCCAAACCCCTTGTTCTGA...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGTGGTCAAAGATGACATaGACCCCAATCTTCTCACGA +
Preference number: 4 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLWSKMT*TPIFSR
Trigger: TCGTGAGAAGATTGGGGTCCATGTCATCTTTGACCA...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TGCATACATCCAGCTTTGAGTCATTGCAGTGGACCCAAAAACCTCCCTCTGTGTTTAAGACCTGTTTGGTaGGCTTCCTCTGGGAGAATG +
Preference number: 4 (lower is better)
Translates to: CIHPALSHCSGPKNLPLCLRPVW*ASSGRM
Trigger: CATTCTCCCAGAGGAAGCTCACCAAACAGGTCTTAA...ACACAGAGGGAGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGGATGTATGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR CCA 90 bp GTCATGAACTGCTTATTTTGCTGTTTCCATGAACCGACTCTTAGGATCACAGGTCGGAACTTCTGGAGGTaGCTGAGCACTTGGAGGATG +
Preference number: 4 (lower is better)
Translates to: VMNCLFCCFHEPTLRITGRNFWR*LSTWRM
Trigger: CATCCTCCAAGTGCTCAGCCACCTCCAGAAGTTCCG...ACCTGTGATCCTAAGAGTCGGTTCATGGAAACAGCAAAATAAGCAGTTCATGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp CAAAGGAGAACAGCAGTAAATACCACAGATGTGCCTGAAGTGTGGCCATGCCTCCCCTTTTCTATGCAGTaGTATCGTTCAGGGAATTCC +
Preference number: 4 (lower is better)
Translates to: QRRTAVNTTDVPEVWPCLPFSMQ*YRSGNS
Trigger: GGAATTCCCTGAACGATACCACTGCATAGAAAAGGG...GAGGCATGGCCACACTTCAGGCACATCTGTGGTATTTACTGCTGTTCTCCTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCAGCAGGCACTCTGTCTaGTTCAAAGGGACAAACCCC +
Preference number: 4 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVSRHSV*FKGTNP
Trigger: GGGGTTTGTCCCTTTGAATCAGACAGAGTGCCTGCT...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCGACTCAAGTTCCTGCTaGACCTTGTGCAGCAGTTCG +
Preference number: 4 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVDSSSC*TLCSSS
Trigger: CGAACTGCTGCACAAGGTGCAGCAGGAACTTGAGTC...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp GAGGAGCCTGAGCAAAGCTCACAGAAAAGCCTGCCACAGACAGTAAAAACCAAAACACTTCCTCGACACTaGATACATCCAGCTTTGAGT +
Preference number: 4 (lower is better)
Translates to: EEPEQSSQKSLPQTVKTKTLPRH*IHPALS
Trigger: ACTCAAAGCTGGATGTATGCAGTGTCGAGGAAGTGT...TTTGGTTTTTACTGTCTGTGGCAGGCTTTTCTGTGAGCTTTGCTCAGGCTCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR GCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCTGTAGGCCTGGGTTTTaGACACTTCCTCGACACTGC +
Preference number: 4 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVCRPGF*TLPRHC
Trigger: GCAGTGTCGAGGAAGTGTGCAAAACCCAGGCCTACA...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCTGCGGCAGAGCTGCTaGCTGGCCTACCAGAGAGCT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLRQSC*LAYQRA
Trigger: AGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCGCAG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCACACGGAGTGAAGCATaGCAAAGGGTGATACCAGCG +
Preference number: 4 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSTRSEA*QRVIPA
Trigger: CGCTGGTATCACCCTTTGCCATGCTTCACTCCGTGT...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp AGGCAAAGGTCTCTTTGTCAAGAGAGGAGAGCATGTCCCTGCAGCAGTAAGGTTGCTGCCCATGAAATATaGTGTTCACCACCTTTAAGA +
Preference number: 4 (lower is better)
Translates to: RQRSLCQERRACPCSSKVAAHEI*CSPPLR
Trigger: TCTTAAAGGTGGTGAACACCATATTTCATGGGCAGC...AACCTTACTGCTGCAGGGACATGCTCTCCTCTCTTGACAAAGAGACCTTTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR GCA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCTCAGACTCAAGTTCCTaGTGCACCTTGTGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVSDSSS*CTLCSS
Trigger: ACTGCTGCACAAGGTGCAGCAGGAACTTGAGTCTGA...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp GAGGAGCCTGAGCAAAGCTCACAGAAAAGCCTGCCACAGACAGTAAAAACCAAATCCATGGTTAATACCTaGTCAAAGATGACATGGACC +
Preference number: 4 (lower is better)
Translates to: EEPEQSSQKSLPQTVKTKSMVNT*SKMTWT
Trigger: GGTCCATGTCATCTTTGACCAGGTATTAACCATGGA...TTTGGTTTTTACTGTCTGTGGCAGGCTTTTCTGTGAGCTTTGCTCAGGCTCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp CAAAGGAGAACAGCAGTAAATACCACAGATGTGCCTGAAGTGTGGCCATGCCTCAGCAGTAAGGTTCCATaGTTAATACCTGGTCAAAGA +
Preference number: 4 (lower is better)
Translates to: QRRTAVNTTDVPEVWPCLSSKVP*LIPGQR
Trigger: TCTTTGACCAGGTATTAACCATGGAACCTTACTGCT...GAGGCATGGCCACACTTCAGGCACATCTGTGGTATTTACTGCTGTTCTCCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
3UTR CAA 72 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATaGCCCTCCCATCTCAGCCAGAGGGGCTGGGTTAAA +
Preference number: 4 (lower is better)
Translates to: FKRHLKVLHYVA*PSHLSQRGWVK
Trigger: TTTAACCCAGCCCCTCTGGCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGGGCCTCTGTCTCGGTaGACTTGGCTAGCATCTCAG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFGPLSR*TWLASQ
Trigger: CTGAGATGCTAGCCAAGTTCACCGAGACAGAGGCCC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCTGCTGGAGTGCACCTaGGCTTGGAGATGGGGTTCT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLLECT*AWRWGS
Trigger: AGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTCTCCCCTAGACCAGTaGGGCAAACCCAGGGATCTG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFSPLDQ*GKPRDL
Trigger: CAGATCCCTGGGTTTGCCTCACTGGTCTAGGGGAGA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCCAGGGATCTGTTCCTaGCAAGCCCAAGAGGAGACC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFPGICS*QAQEET
Trigger: GGTCTCCTCTTGGGCTTGCCAGGAACAGATCCCTGG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCTGGGTTCCTTGTTCTaGATGAGCTCCAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLGSLF*MSSRLL
Trigger: CAGGAGCCTGGAGCTCATTCAGAACAAGGAACCCAG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTACTTCCCAGACCACATaGCTCGGAAGAGGGTGTGCA +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFTSQTT*LGRGCA
Trigger: TGCACACCCTCTTCCGAGTCATGTGGTCTGGGAAGT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTAGGCTCCACACGGAGTaGAGCATGGCAAAGGGTGAT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFRLHTE*SMAKGD
Trigger: ATCACCCTTTGCCATGCTTCACTCCGTGTGGAGCCT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTCTGGGAGAATGGGATaGGGATCCTGCGTGTGGAAC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFSGRMG*GSCVWN
Trigger: GTTCCACACGCAGGATCCTCATCCCATTCTCCCAGA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTACTCGGAAGAGGGTGTaGAGTTCGTGGCAGAGGGAA +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFTRKRV*SSWQRE
Trigger: TTCCCTCTGCCACGAACTGCACACCCTCTTCCGAGT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTTCTGCGTTCGTCCTTaGTGCTGGAGTGCACCTGAG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFFCVRP*CWSAPE
Trigger: CTCAGGTGCACTCCAGCAGCAAGGACGAACGCAGAA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCGGAACTTCTGGAGGTaGCTGAGCACTTGGAGGATG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFRNFWR*LSTWRM
Trigger: CATCCTCCAAGTGCTCAGCCACCTCCAGAAGTTCCG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCATTCCCGGAACTTCTaGAGGTGGCTGAGCACTTGG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFHSRNF*RWLSTW
Trigger: CCAAGTGCTCAGCCACCTCCAGAAGTTCCGGGAATG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTTCCCGTTGGTTGCTTaGGGAAACAGGTGCTCGGAG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFFPLVA*GNRCSE
Trigger: CTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGTTCGTCCTTGCTGCTaGAGTGCACCTGAGCTTGGA +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFVRPCC*SAPELG
Trigger: TCCAAGCTCAGGTGCACTCCAGCAGCAAGGACGAAC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
3UTR CAA 72 bp CCTTACAGGAGTGTTCCAGCACACATGGCTTTCTTTTaGAATGGGCTTTCCTACAGTGGTAACAAATCATCA +
Preference number: 4 (lower is better)
Translates to: PYRSVPAHMAFF*NGLSYSGNKSS
Trigger: TGATGATTTGTTACCACTGTAGGAAAGCCCATTCAAAAAGAAAGCCATGTGTGCTGGAACACTCCTGTAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCTGAGCAGCTGCCCATaGAATATGGTGTTCACCACC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLSSCP*NMVFTT
Trigger: GGTGGTGAACACCATATTTCATGGGCAGCTGCTCAG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTAGCAGGCACTCTGTCTaGTTCAAAGGGACAAACCCC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFSRHSV*FKGTNP
Trigger: GGGGTTTGTCCCTTTGAATCAGACAGAGTGCCTGCT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTGGCTAGCATCTCAGTaGGCAGGCACTCTGTCTGAT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFWLASQ*AGTLSD
Trigger: ATCAGACAGAGTGCCTGCTCACTGAGATGCTAGCCA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGACTCAAGTTCCTGCTaGACCTTGTGCAGCAGTTCG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFDSSSC*TLCSSS
Trigger: CGAACTGCTGCACAAGGTGCAGCAGGAACTTGAGTC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTGTAGGCCTGGGTTTTaGACACTTCCTCGACACTGC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFCRPGF*TLPRHC
Trigger: GCAGTGTCGAGGAAGTGTGCAAAACCCAGGCCTACA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTAGACAGCACCACTTCTaGGGATTCAGGATGGAGTGG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFRQHHF*GFRMEW
Trigger: CCACTCCATCCTGAATCCCCAGAAGTGGTGCTGTCT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTACACGGAGTGAAGCATaGCAAAGGGTGATACCAGCG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFTRSEA*QRVIPA
Trigger: CGCTGGTATCACCCTTTGCCATGCTTCACTCCGTGT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCTTCCTCTGGGAGAATaGGATGAGGATCCTGCGTGT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLPLGE*DEDPAC
Trigger: ACACGCAGGATCCTCATCCCATTCTCCCAGAGGAAG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGAGGGAAATGTGCTTTaGGCTGGGTTCCTTGTTCTG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFEGNVL*AGFLVL
Trigger: CAGAACAAGGAACCCAGCTCAAAGCACATTTCCCTC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTCCTGCTGCACCTTGTaGAGCAGTTCGCAGAGAAAT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFSCCTL*SSSQRN
Trigger: ATTTCTCTGCGAACTGCTGCACAAGGTGCAGCAGGA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTCAGACTCAAGTTCCTaGTGCACCTTGTGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFSDSSS*CTLCSS
Trigger: ACTGCTGCACAAGGTGCAGCAGGAACTTGAGTCTGA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTAGGGTGTGCAGTTCGTaGCAGAGGGAAATGTGCTTT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFRVCSS*QREMCF
Trigger: AAAGCACATTTCCCTCTGCCACGAACTGCACACCCT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTTGGTGAGCTTCCTCTaGGAGAATGGGATGAGGATC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLVSFL*ENGMRI
Trigger: GATCCTCATCCCATTCTCCCAGAGGAAGCTCACCAA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
41% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCAAGGGGTTTGGGGTTaGACTTTCGTCGTTTGCTGT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFQGVWG*TFVVCC
Trigger: ACAGCAAACGACGAAAGTCCAACCCCAAACCCCTTG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTTAAGACCTGTTTGGTaGGCTTCCTCTGGGAGAATG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLRPVW*ASSGRM
Trigger: CATTCTCCCAGAGGAAGCTCACCAAACAGGTCTTAA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCCAGCTTTGAGTCATTaGAGTGGACCCAAAAACCTG +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFPALSH*SGPKNL
Trigger: CAGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTCAGAACAAGGGGTTTaGGGTTGGACTTTCGTCGTT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFSEQGV*GWTFVV
Trigger: AACGACGAAAGTCCAACCCCAAACCCCTTGTTCTGA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTATACCTGGTCAAAGATaGCATGGACCCCAATCTTCT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFIPGQR*HGPQSS
Trigger: AGAAGATTGGGGTCCATGTCATCTTTGACCAGGTAT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR TCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTAAACCTGGTCAAAGATaGCATGGACCCCAATCTTCT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFKPGQR*HGPQSS
Trigger: AGAAGATTGGGGTCCATGTCATCTTTGACCAGGTTT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCAAACCCCTTTTCTATaGAGTGGTATCGTTCAGGGA +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFQTPFL*SGIVQG
Trigger: TCCCTGAACGATACCACTGCATAGAAAAGGGGTTTG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR GCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTACACTTCCTCGACACTaGATACATCCAGCTTTGAGT +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFTLPRH*IHPALS
Trigger: ACTCAAAGCTGGATGTATGCAGTGTCGAGGAAGTGT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCCCTTTTCTATGCAGTaGTATCGTTCAGGGAATTCC +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFPFSMQ*YRSGNS
Trigger: GGAATTCCCTGAACGATACCACTGCATAGAAAAGGG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTGGTCAAAGATGACATaGACCCCAATCTTCTCACGA +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFWSKMT*TPIFSR
Trigger: TCGTGAGAAGATTGGGGTCCATGTCATCTTTGACCA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGCTGCCCATGAAATATaGTGTTCACCACCTTTAAGA +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFAAHEI*CSPPLR
Trigger: TCTTAAAGGTGGTGAACACCATATTTCATGGGCAGC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CCA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTTTGAGTCATTGCAGTaGACCCAAAAACCTGGTCAA +
Preference number: 4 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFFESLQ*TQKPGQ
Trigger: TTGACCAGGTTTTTGGGTCCACTGCAATGACTCAAA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
38% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS GCA 90 bp GACACCTGGGGCCACCGCCGGCTGGCGGCGCGGATTGAGGGCAGCTaGGGACAAGCGCCGGGAGGTAGCGAGGGTGGCAGGGCGCACGGC +
Preference number: 5 (lower is better)
Translates to: DTWGHRRLAARIEGS*GQAPGGSEGGRAHG
Trigger: GCCGTGCGCCCTGCCACCCTCGCTACCTCCCGGCGCTTGTCCGCAGCTGCCCTCAATCCGCGCCGCCAGCCGGCGGTGGCCCCAGGTGTC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 90 bp TTCCCCAGGTTGCGCAGGCCGGTGACACCTGGGGCCACCGCCGGCTaGCGGCGCGGATTGAGGGCAGCTGCGGACAAGCGCCGGGAGGTA +
Preference number: 5 (lower is better)
Translates to: FPRLRRPVTPGATAG*RRGLRAAADKRREV
Trigger: TACCTCCCGGCGCTTGTCCGCAGCTGCCCTCAATCCGCGCCGCCAGCCGGCGGTGGCCCCAGGTGTCACCGGCCTGCGCAACCTGGGGAA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 90 bp CCACGTCCTCGCCCGCAGCTGTGGACCGCAGCGTCCGCCCACGCCTaGCGAGCAGGTCCTGCTTCTGGCCTCGAACTGCCAGGAGGGAGC +
Preference number: 5 (lower is better)
Translates to: PRPRPQLWTAASAHA*RAGPASGLELPGGS
Trigger: GCTCCCTCCTGGCAGTTCGAGGCCAGAAGCAGGACCTGCTCGCCAGGCGTGGGCGGACGCTGCGGTCCACAGCTGCGGGCGAGGACGTGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 90 bp CCTGAGGAGTGCGCTGTGGCGGGACCACGTCCTCGCCCGCAGCTGTaGACCGCAGCGTCCGCCCACGCCTGGCGAGCAGGTCCTGCTTCT +
Preference number: 5 (lower is better)
Translates to: PEECAVAGPRPRPQL*TAASAHAWRAGPAS
Trigger: AGAAGCAGGACCTGCTCGCCAGGCGTGGGCGGACGCTGCGGTCCACAGCTGCGGGCGAGGACGTGGTCCCGCCACAGCGCACTCCTCAGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS TCA 90 bp GCAGCGTCTTGGCCAGCAGGCGCTGGCGCCGGTACCACAGAGCCGTaGGCATCTGCGGCTGTCCCTGAGGAGTGCGCTGTGGCGGGACCA +
Preference number: 5 (lower is better)
Translates to: AASWPAGAGAGTTEP*ASAAVPEECAVAGP
Trigger: TGGTCCCGCCACAGCGCACTCCTCAGGGACAGCCGCAGATGCTCACGGCTCTGTGGTACCGGCGCCAGCGCCTGCTGGCCAAGACGCTGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS GCA 90 bp CGTCCGCCCACGCCTGGCGAGCAGGTCCTGCTTCTGGCCTCGAACTaGCAGGAGGGAGCTTCTCAGCAACTTCAGGTCCCCCTCCGGGTT +
Preference number: 5 (lower is better)
Translates to: RPPTPGEQVLLLASN*QEGASQQLQVPLRV
Trigger: AACCCGGAGGGGGACCTGAAGTTGCTGAGAAGCTCCCTCCTGGCAGTTCGAGGCCAGAAGCAGGACCTGCTCGCCAGGCGTGGGCGGACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 90 bp GTGGACCGCAGCGTCCGCCCACGCCTGGCGAGCAGGTCCTGCTTCTaGCCTCGAACTGCCAGGAGGGAGCTTCTCAGCAACTTCAGGTCC +
Preference number: 5 (lower is better)
Translates to: VDRSVRPRLASRSCF*PRTARRELLSNFRS
Trigger: GGACCTGAAGTTGCTGAGAAGCTCCCTCCTGGCAGTTCGAGGCCAGAAGCAGGACCTGCTCGCCAGGCGTGGGCGGACGCTGCGGTCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS TCA 90 bp GCAGAGGCCCTGAGGTTCGCAGCCCTGGGCCCGGACACTCCTTACTaGCAACTCTGCGGCAGAGCTGCTGGCTGGCCTACCAGAGAGCTG +
Preference number: 5 (lower is better)
Translates to: AEALRFAALGPDTPY*QLCGRAAGWPTREL
Trigger: CAGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCGCAGAGTTGTCAGTAAGGAGTGTCCGGGCCCAGGGCTGCGAACCTCAGGGCCTCTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 90 bp CGGCAGAGCTGCTGGCTGGCCTACCAGAGAGCTGCGCCTTCCCGTTaGTTGCTTGGGGAAACAGGTGCTCGGAGGTGGAAGGGTCGAGGT +
Preference number: 5 (lower is better)
Translates to: RQSCWLAYQRAAPSR*LLGETGARRWKGRG
Trigger: ACCTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 90 bp CCTGGGCCCGGACACTCCTTACTGACAACTCTGCGGCAGAGCTGCTaGCTGGCCTACCAGAGAGCTGCGCCTTCCCGTTGGTTGCTTGGG +
Preference number: 5 (lower is better)
Translates to: PGPGHSLLTTLRQSC*LAYQRAAPSRWLLG
Trigger: CCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCGCAGAGTTGTCAGTAAGGAGTGTCCGGGCCCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 90 bp AGAGCTGCTGGCTGGCCTACCAGAGAGCTGCGCCTTCCCGTTGGTTaGTTGGGGAAACAGGTGCTCGGAGGTGGAAGGGTCGAGGTTCAG +
Preference number: 5 (lower is better)
Translates to: RAAGWPTRELRLPVG*LGKQVLGGGRVEVQ
Trigger: CTGAACCTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 90 bp ACTGACAACTCTGCGGCAGAGCTGCTGGCTGGCCTACCAGAGAGCTaGGCCTTCCCGTTGGTTGCTTGGGGAAACAGGTGCTCGGAGGTG +
Preference number: 5 (lower is better)
Translates to: TDNSAAELLAGLPES*AFPLVAWGNRCSEV
Trigger: CACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCGCAGAGTTGTCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGTCCAGCAGCCGCCGCTaGACCTCGCGGCGCCGCTGC +
Preference number: 5 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLSSSRR*TSRRRC
Trigger: GCAGCGGCGCCGCGAGGTCAAGCGGCGGCTGCTGGA...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 90 bp CTGCTGGCTGGCCTACCAGAGAGCTGCGCCTTCCCGTTGGTTGCTTaGGGAAACAGGTGCTCGGAGGTGGAAGGGTCGAGGTTCAGGAAA +
Preference number: 5 (lower is better)
Translates to: LLAGLPESCAFPLVA*GNRCSEVEGSRFRK
Trigger: TTTCCTGAACCTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 90 bp GCTGCGCCTTCCCGTTGGTTGCTTGGGGAAACAGGTGCTCGGAGGTaGAAGGGTCGAGGTTCAGGAAACATTCCCGGAACTTCTGGAGGT +
Preference number: 5 (lower is better)
Translates to: AAPSRWLLGETGARR*KGRGSGNIPGTSGG
Trigger: ACCTCCAGAAGTTCCGGGAATGTTTCCTGAACCTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS TCA 90 bp GGAGGGAGCTTCTCAGCAACTTCAGGTCCCCCTCCGGGTTGTCATTaGGCACGTAGTCCTTGCACAGGTAGCAGAACACGTAGAGGTCCC +
Preference number: 5 (lower is better)
Translates to: GGSFSATSGPPPGCH*ARSPCTGSRTRRGP
Trigger: GGGACCTCTACGTGTTCTGCTACCTGTGCAAGGACTACGTGCTCAATGACAACCCGGAGGGGGACCTGAAGTTGCTGAGAAGCTCCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CAA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCGCCACGTGGGAGCACTaGAGGCAGGCCCACGCAGAC +
Preference number: 5 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSATWEH*RQAHAD
Trigger: GTCTGCGTGGGCCTGCCTCAAGTGCTCCCACGTGGC...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS TCA 90 bp AGTTCGTGGCAGAGGGAAATGTGCTTTGAGCTGGGTTCCTTGTTCTaGATGAGCTCCAGGCTCCTGCTGATGGAGGCTCCGCTGCTCCAG +
Preference number: 5 (lower is better)
Translates to: SSWQREMCFELGSLF*MSSRLLLMEAPLLQ
Trigger: CTGGAGCAGCGGAGCCTCCATCAGCAGGAGCCTGGAGCTCATTCAGAACAAGGAACCCAGCTCAAAGCACATTTCCCTCTGCCACGAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 90 bp GGGATGAGGATCCTGCGTGTGGAACCCTCAGACTCAAGTTCCTGCTaGACCTTGTGCAGCAGTTCGCAGAGAAATTCCTGCGCATCCTGC +
Preference number: 5 (lower is better)
Translates to: GMRILRVEPSDSSSC*TLCSSSQRNSCASC
Trigger: GCAGGATGCGCAGGAATTTCTCTGCGAACTGCTGCACAAGGTGCAGCAGGAACTTGAGTCTGAGGGTTCCACACGCAGGATCCTCATCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 90 bp GGCCGTTTTGATGCTTGCCTCCCAGTCAGGGCAATGTGTATGTTCTaGGTTCGTCCTTGCTGCTGGAGTGCACCTGAGCTTGGAGATGGG +
Preference number: 5 (lower is better)
Translates to: GRFDACLPVRAMCMF*VRPCCWSAPELGDG
Trigger: CCCATCTCCAAGCTCAGGTGCACTCCAGCAGCAAGGACGAACGCAGAACATACACATTGCCCTGACTGGGAGGCAAGCATCAAAACGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS GCA 90 bp GTTCCTGGCAAGCCCAAGAGGAGACCTGGAGGCCGTTTTGATGCTTaGCTCCCAGTCAGGGCAATGTGTATGTTCTGCGTTCGTCCTTGC +
Preference number: 5 (lower is better)
Translates to: VPGKPKRRPGGRFDA*LPVRAMCMFCVRPC
Trigger: GCAAGGACGAACGCAGAACATACACATTGCCCTGACTGGGAGGCAAGCATCAAAACGGCCTCCAGGTCTCCTCTTGGGCTTGCCAGGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS GCA 90 bp GCTTGCCTCCCAGTCAGGGCAATGTGTATGTTCTGCGTTCGTCCTTaGTGCTGGAGTGCACCTGAGCTTGGAGATGGGGTTCTGAGAGTT +
Preference number: 5 (lower is better)
Translates to: ACLPVRAMCMFCVRP*CWSAPELGDGVLRV
Trigger: AACTCTCAGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAGCAAGGACGAACGCAGAACATACACATTGCCCTGACTGGGAGGCAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS CCA 90 bp CTCCCAGTCAGGGCAATGTGTATGTTCTGCGTTCGTCCTTGCTGCTaGAGTGCACCTGAGCTTGGAGATGGGGTTCTGAGAGTTTTGCGC +
Preference number: 5 (lower is better)
Translates to: LPVRAMCMFCVRPCC*SAPELGDGVLRVLR
Trigger: GCGCAAAACTCTCAGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAGCAAGGACGAACGCAGAACATACACATTGCCCTGACTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS GCA 90 bp AATGGGATGAGGATCCTGCGTGTGGAACCCTCAGACTCAAGTTCCTaGTGCACCTTGTGCAGCAGTTCGCAGAGAAATTCCTGCGCATCC +
Preference number: 5 (lower is better)
Translates to: NGMRILRVEPSDSSS*CTLCSSSQRNSCAS
Trigger: GGATGCGCAGGAATTTCTCTGCGAACTGCTGCACAAGGTGCAGCAGGAACTTGAGTCTGAGGGTTCCACACGCAGGATCCTCATCCCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 90 bp TGCCTCCCAGTCAGGGCAATGTGTATGTTCTGCGTTCGTCCTTGCTaGTGGAGTGCACCTGAGCTTGGAGATGGGGTTCTGAGAGTTTTG +
Preference number: 5 (lower is better)
Translates to: CLPVRAMCMFCVRPC*WSAPELGDGVLRVL
Trigger: CAAAACTCTCAGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAGCAAGGACGAACGCAGAACATACACATTGCCCTGACTGGGAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS CCA 90 bp AGTCCTTGCACAGGTAGCAGAACACGTAGAGGTCCCGGACCTCCATaGCCAGCGGGTGTCCTGTCTCTTCAAAGTGTTTTAGTGCATGGT +
Preference number: 5 (lower is better)
Translates to: SPCTGSRTRRGPGPP*PAGVLSLQSVLVHG
Trigger: ACCATGCACTAAAACACTTTGAAGAGACAGGACACCCGCTGGCCATGGAGGTCCGGGACCTCTACGTGTTCTGCTACCTGTGCAAGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS TCA 90 bp AAGGGTCGAGGTTCAGGAAACATTCCCGGAACTTCTGGAGGTGGCTaGGCACTTGGAGGATGGAGTTCATGTAGCAGGTATTCCCCAGGT +
Preference number: 5 (lower is better)
Translates to: KGRGSGNIPGTSGGG*ALGGWSSCSRYSPG
Trigger: ACCTGGGGAATACCTGCTACATGAACTCCATCCTCCAAGTGCTCAGCCACCTCCAGAAGTTCCGGGAATGTTTCCTGAACCTCGACCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp GTTACAGCAGTAAGTAAACACACCAGCCAATCACAGCGTTCAGGAGACTGCAGCCTTCCCGTTGGTTGCTaGGGGAAACAGGTGCTCGGA +
Preference number: 5 (lower is better)
Translates to: VTAVSKHTSQSQRSGDCSLPVGC*GKQVLG
Trigger: TCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAG...GCTGCAGTCTCCTGAACGCTGTGATTGGCTGGTGTGTTTACTTACTGCTGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CAA 90 bp TGGACAGTGATGTGTGGGTGGAGACAAACGTGTCAGGGAGCACAAGGAAGCAGCTGCATACATCCAGCTTaGAGTCATTGCAGTGGACCC +
Preference number: 5 (lower is better)
Translates to: WTVMCGWRQTCQGAQGSSCIHPA*SHCSGP
Trigger: GGGTCCACTGCAATGACTCAAAGCTGGATGTATGCA...GCTGCTTCCTTGTGCTCCCTGACACGTTTGTCTCCACCCACACATCACTGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CAA 90 bp TCACGATGGTTACGGCCAGACCACCTGAATCTTTTAAGGTGTAGCCGGAGGACCACAAGGGGTTTGGGGTaGGACTTTCGTCGTTTGCCT +
Preference number: 5 (lower is better)
Translates to: SRWLRPDHLNLLRCSRRTTRGLG*DFRRLP
Trigger: AGGCAAACGACGAAAGTCCAACCCCAAACCCCTTGT...GGTCCTCCGGCTACACCTTAAAAGATTCAGGTGGTCTGGCCGTAACCATCGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR CAA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGGAGGTGGCTGAGCACTaGGAGGATGGAGTTCATGTA +
Preference number: 5 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLEVAEH*EDGVHV
Trigger: TACATGAACTCCATCCTCCAAGTGCTCAGCCACCTC...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CAA 90 bp TGGTGCTGCTGTCTGGTGTTCTTCCAGGCACGCAGAAACCAGCACAGAAAGACTACCTTTAAGACCTGTTaGGTGAGCTTCCTCTGGGAG +
Preference number: 5 (lower is better)
Translates to: WCCCLVFFQARRNQHRKTTFKTC*VSFLWE
Trigger: CTCCCAGAGGAAGCTCACCAAACAGGTCTTAAAGGT...AGTCTTTCTGTGCTGGTTTCTGCGTGCCTGGAAGAACACCAGACAGCAGCACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CAA 90 bp CTTGAGTCTCACTACCTTCCTCAGCCAGTCAGCACTGTCCAGGTTGTCATCTGCAGAGGGAAATGTGCTTaGAGCTGGGTTCCTTGTTCT +
Preference number: 5 (lower is better)
Translates to: LESHYLPQPVSTVQVVICRGKCA*SWVPCS
Trigger: AGAACAAGGAACCCAGCTCAAAGCACATTTCCCTCT...GCAGATGACAACCTGGACAGTGCTGACTGGCTGAGGAAGGTAGTGAGACTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CAA 90 bp CAAAGGAGAACAGCAGTAAATACCACAGATGTGCCTGAAGTGTGGCCATGCCTCTCTGTCTCGGTGAACTaGGCTAGCATCTCAGTGAGC +
Preference number: 5 (lower is better)
Translates to: QRRTAVNTTDVPEVWPCLSVSVN*ASISVS
Trigger: GCTCACTGAGATGCTAGCCAAGTTCACCGAGACAGA...GAGGCATGGCCACACTTCAGGCACATCTGTGGTATTTACTGCTGTTCTCCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 90 bp AATATGGTGTTCACCACCTTTAAGACCTGTTTGGTGAGCTTCCTCTaGGAGAATGGGATGAGGATCCTGCGTGTGGAACCCTCAGACTCA +
Preference number: 5 (lower is better)
Translates to: NMVFTTFKTCLVSFL*ENGMRILRVEPSDS
Trigger: TGAGTCTGAGGGTTCCACACGCAGGATCCTCATCCCATTCTCCCAGAGGAAGCTCACCAAACAGGTCTTAAAGGTGGTGAACACCATATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000024779.15
ENSMUST00000131550.2
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp AATTCTCTTTCTGGAATAAACAACACAGGGTTTCAGGTGAGGTGCAATCCAGTCGCGCCTTCCCGTTGGTaGCTTGGGGAAACAGGTGCT +
Preference number: 5 (lower is better)
Translates to: NSLSGINNTGFQVRCNPVAPSRW*LGETGA
Trigger: AGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGC...GACTGGATTGCACCTCACCTGAAACCCTGTGTTGTTTATTCCAGAAAGAGAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CAA 90 bp CCTGATGGTTCATGCAGAAGGACCCCAGTGTTAACGCAGACTCTACTGCCATTGTCCAGCTTTGAGTCATaGCAGTGGACCCAAAAACCT +
Preference number: 5 (lower is better)
Translates to: PDGSCRRTPVLTQTLLPLSSFES*QWTQKP
Trigger: AGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGGA...CAATGGCAGTAGAGTCTGCGTTAACACTGGGGTCCTTCTGCATGAACCATCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS TCA 90 bp GTCTCGGTGAACTTGGCTAGCATCTCAGTGAGCAGGCACTCTGTCTaGTTCAAAGGGACAAACCCCTTTTCTATGCAGTGGTATCGTTCA +
Preference number: 5 (lower is better)
Translates to: VSVNLASISVSRHSV*FKGTNPFSMQWYRS
Trigger: TGAACGATACCACTGCATAGAAAAGGGGTTTGTCCCTTTGAATCAGACAGAGTGCCTGCTCACTGAGATGCTAGCCAAGTTCACCGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp CATTGCAGTGGACCCAAAAACCTCCCTCTGTGTTGTAGCAATAGGCTGTGTAGTACCTTTAAGACCTGTTaGGTGAGCTTCCTCTGGGAG +
Preference number: 5 (lower is better)
Translates to: HCSGPKNLPLCCSNRLCSTFKTC*VSFLWE
Trigger: CTCCCAGAGGAAGCTCACCAAACAGGTCTTAAAGGT...ACTACACAGCCTATTGCTACAACACAGAGGGAGGTTTTTGGGTCCACTGCAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131550.2
CDS-3UTR CAA 90 bp TTTAAGAGACATCTAAAAGTTCTTCACTATGTGGCATTGCCCTCCCATCTCAGCCTCAGAACAAGGGGTTaGGGGTTGGACTTTCGTCGT +
Preference number: 5 (lower is better)
Translates to: FKRHLKVLHYVALPSHLSLRTRG*GLDFRR
Trigger: ACGACGAAAGTCCAACCCCAAACCCCTTGTTCTGAG...GCTGAGATGGGAGGGCAATGCCACATAGTGAAGAACTTTTAGATGTCTCTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGCGCCTTCCCGTTGGTaGCTTGGGGAAACAGGTGCT +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFAPSRW*LGETGA
Trigger: AGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTGAGGTGGCTGAGCACTaGGAGGATGGAGTTCATGTA +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFEVAEH*EDGVHV
Trigger: TACATGAACTCCATCCTCCAAGTGCTCAGCCACCTC...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTCTGTCTCGGTGAACTaGGCTAGCATCTCAGTGAGC +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFSVSVN*ASISVS
Trigger: GCTCACTGAGATGCTAGCCAAGTTCACCGAGACAGA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTACAAGGGGTTTGGGGTaGGACTTTCGTCGTTTGCTG +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFTRGLG*DFRRLL
Trigger: CAGCAAACGACGAAAGTCCAACCCCAAACCCCTTGT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTCTCAGAACAAGGGGTTaGGGGTTGGACTTTCGTCGT +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFLRTRG*GLDFRR
Trigger: ACGACGAAAGTCCAACCCCAAACCCCTTGTTCTGAG...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTACCTTTAAGACCTGTTaGGTGAGCTTCCTCTGGGAG +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFTFKTC*VSFLWE
Trigger: CTCCCAGAGGAAGCTCACCAAACAGGTCTTAAAGGT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTGCATACATCCAGCTTaGAGTCATTGCAGTGGACCC +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFCIHPA*SHCSGP
Trigger: GGGTCCACTGCAATGACTCAAAGCTGGATGTATGCA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTAGAGGGAAATGTGCTTaGAGCTGGGTTCCTTGTTCT +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFRGKCA*SWVPCS
Trigger: AGAACAAGGAACCCAGCTCAAAGCACATTTCCCTCT...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS-3UTR CAA 90 bp TTTTATGAGAGAAGGGGATTTGCATGGTTTCACAAGAAAGTGACTACCAATTTTTCCAGCTTTGAGTCATaGCAGTGGACCCAAAAACCT +
Preference number: 5 (lower is better)
Translates to: FYERRGFAWFHKKVTTNFSSFES*QWTQKP
Trigger: AGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGGA...AAAATTGGTAGTCACTTTCTTGTGAAACCATGCAAATCCCCTTCTCTCATAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp AGGGTGGCAGGGCGCACGGCCACGGGCCCGGGAGCGTaGAGGAGCAGGCGCGCACTCTTCCGCGGCGGCGCA +
Preference number: 6 (lower is better)
Translates to: RVAGRTATGPGA*RSRRALFRGGA
Trigger: TGCGCCGCCGCGGAAGAGTGCGCGCCTGCTCCTGCACGCTCCCGGGCCCGTGGCCGTGCGCCCTGCCACCCT
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS GCA 72 bp GGCCACCGCCGGCTGGCGGCGCGGATTGAGGGCAGCTaGGGACAAGCGCCGGGAGGTAGCGAGGGTGGCAGG +
Preference number: 6 (lower is better)
Translates to: GHRRLAARIEGS*GQAPGGSEGGR
Trigger: CCTGCCACCCTCGCTACCTCCCGGCGCTTGTCCGCAGCTGCCCTCAATCCGCGCCGCCAGCCGGCGGTGGCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 72 bp TGCGCTGTGGCGGGACCACGTCCTCGCCCGCAGCTGTaGACCGCAGCGTCCGCCCACGCCTGGCGAGCAGGT +
Preference number: 6 (lower is better)
Translates to: CAVAGPRPRPQL*TAASAHAWRAG
Trigger: ACCTGCTCGCCAGGCGTGGGCGGACGCTGCGGTCCACAGCTGCGGGCGAGGACGTGGTCCCGCCACAGCGCA
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 72 bp TTGCGCAGGCCGGTGACACCTGGGGCCACCGCCGGCTaGCGGCGCGGATTGAGGGCAGCTGCGGACAAGCGC +
Preference number: 6 (lower is better)
Translates to: LRRPVTPGATAG*RRGLRAAADKR
Trigger: GCGCTTGTCCGCAGCTGCCCTCAATCCGCGCCGCCAGCCGGCGGTGGCCCCAGGTGTCACCGGCCTGCGCAA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 72 bp CGCTGCTCCAGCTGCGCCCGGCCGCGGGAGCTCTTCTaGAACCAGAGCCGCAGCGTCTTGGCCAGCAGGCGC +
Preference number: 6 (lower is better)
Translates to: RCSSCARPRELF*NQSRSVLASRR
Trigger: GCGCCTGCTGGCCAAGACGCTGCGGCTCTGGTTCCAGAAGAGCTCCCGCGGCCGGGCGCAGCTGGAGCAGCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 72 bp CGCCCGCAGCTGTGGACCGCAGCGTCCGCCCACGCCTaGCGAGCAGGTCCTGCTTCTGGCCTCGAACTGCCA +
Preference number: 6 (lower is better)
Translates to: RPQLWTAASAHA*RAGPASGLELP
Trigger: TGGCAGTTCGAGGCCAGAAGCAGGACCTGCTCGCCAGGCGTGGGCGGACGCTGCGGTCCACAGCTGCGGGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 72 bp CGTGAGCATCTGCGGCTGTCCCTGAGGAGTGCGCTGTaGCGGGACCACGTCCTCGCCCGCAGCTGTGGACCG +
Preference number: 6 (lower is better)
Translates to: REHLRLSLRSAL*RDHVLARSCGP
Trigger: CGGTCCACAGCTGCGGGCGAGGACGTGGTCCCGCCACAGCGCACTCCTCAGGGACAGCCGCAGATGCTCACG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 72 bp CGCGGGAGCTCTTCTGGAACCAGAGCCGCAGCGTCTTaGCCAGCAGGCGCTGGCGCCGGTACCACAGAGCCG +
Preference number: 6 (lower is better)
Translates to: RGSSSGTRAAAS*PAGAGAGTTEP
Trigger: CGGCTCTGTGGTACCGGCGCCAGCGCCTGCTGGCCAAGACGCTGCGGCTCTGGTTCCAGAAGAGCTCCCGCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CAA 72 bp CCGCGGGAGCTCTTCTGGAACCAGAGCCGCAGCGTCTaGGCCAGCAGGCGCTGGCGCCGGTACCACAGAGCC +
Preference number: 6 (lower is better)
Translates to: PRELFWNQSRSV*ASRRWRRYHRA
Trigger: GGCTCTGTGGTACCGGCGCCAGCGCCTGCTGGCCAAGACGCTGCGGCTCTGGTTCCAGAAGAGCTCCCGCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS TCA 72 bp TGGCCAGCAGGCGCTGGCGCCGGTACCACAGAGCCGTaGGCATCTGCGGCTGTCCCTGAGGAGTGCGCTGTG +
Preference number: 6 (lower is better)
Translates to: WPAGAGAGTTEP*ASAAVPEECAV
Trigger: CACAGCGCACTCCTCAGGGACAGCCGCAGATGCTCACGGCTCTGTGGTACCGGCGCCAGCGCCTGCTGGCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS TCA 72 bp TCATGTAGCAGGTATTCCCCAGGTTGCGCAGGCCGGTaGCACCTGGGGCCACCGCCGGCTGGCGGCGCGGAT +
Preference number: 6 (lower is better)
Translates to: SCSRYSPGCAGR*HLGPPPAGGAD
Trigger: ATCCGCGCCGCCAGCCGGCGGTGGCCCCAGGTGTCACCGGCCTGCGCAACCTGGGGAATACCTGCTACATGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp GACCGCAGCGTCCGCCCACGCCTGGCGAGCAGGTCCTaGTTCTGGCCTCGAACTGCCAGGAGGGAGCTTCTC +
Preference number: 6 (lower is better)
Translates to: DRSVRPRLASRS*FWPRTARRELL
Trigger: GAGAAGCTCCCTCCTGGCAGTTCGAGGCCAGAAGCAGGACCTGCTCGCCAGGCGTGGGCGGACGCTGCGGTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS TCA 72 bp CTTCAATGTAGCGGCCGCAGGCCACGTGGGAGCACTTaGGGCAGGCCCACGCAGACTCGGTGGTGGCGCACT +
Preference number: 6 (lower is better)
Translates to: LQCSGRRPRGST*GRPTQTRWWRT
Trigger: AGTGCGCCACCACCGAGTCTGCGTGGGCCTGCCTCAAGTGCTCCCACGTGGCCTGCGGCCGCTACATTGAAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 72 bp AGCGTCCGCCCACGCCTGGCGAGCAGGTCCTGCTTCTaGCCTCGAACTGCCAGGAGGGAGCTTCTCAGCAAC +
Preference number: 6 (lower is better)
Translates to: SVRPRLASRSCF*PRTARRELLSN
Trigger: GTTGCTGAGAAGCTCCCTCCTGGCAGTTCGAGGCCAGAAGCAGGACCTGCTCGCCAGGCGTGGGCGGACGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS GCA 72 bp ACGCCTGGCGAGCAGGTCCTGCTTCTGGCCTCGAACTaGCAGGAGGGAGCTTCTCAGCAACTTCAGGTCCCC +
Preference number: 6 (lower is better)
Translates to: TPGEQVLLLASN*QEGASQQLQVP
Trigger: GGGGACCTGAAGTTGCTGAGAAGCTCCCTCCTGGCAGTTCGAGGCCAGAAGCAGGACCTGCTCGCCAGGCGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS GCA 72 bp GGCTGGCCTACCAGAGAGCTGCGCCTTCCCGTTGGTTaGTTGGGGAAACAGGTGCTCGGAGGTGGAAGGGTC +
Preference number: 6 (lower is better)
Translates to: GWPTRELRLPVG*LGKQVLGGGRV
Trigger: GACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp TCTGCGGCAGAGCTGCTGGCTGGCCTACCAGAGAGCTaGGCCTTCCCGTTGGTTGCTTGGGGAAACAGGTGC +
Preference number: 6 (lower is better)
Translates to: SAAELLAGLPES*AFPLVAWGNRC
Trigger: GCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCGCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp CCCGGACACTCCTTACTGACAACTCTGCGGCAGAGCTaGTGGCTGGCCTACCAGAGAGCTGCGCCTTCCCGT +
Preference number: 6 (lower is better)
Translates to: PGHSLLTTLRQS*WLAYQRAAPSR
Trigger: ACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCGCAGAGTTGTCAGTAAGGAGTGTCCGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 72 bp GGCCTACCAGAGAGCTGCGCCTTCCCGTTGGTTGCTTaGGGAAACAGGTGCTCGGAGGTGGAAGGGTCGAGG +
Preference number: 6 (lower is better)
Translates to: GLPESCAFPLVA*GNRCSEVEGSR
Trigger: CCTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CAA 90 bp GCTGCTGGCTGGCCTACCAGAGAGCTGCGCCTTCCCGTTGGTTGCTaGGGGAAACAGGTGCTCGGAGGTGGAAGGGTCGAGGTTCAGGAA +
Preference number: 6 (lower is better)
Translates to: AAGWPTRELRLPVGC*GKQVLGGGRVEVQE
Trigger: TTCCTGAACCTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 72 bp TGCTGGCTGGCCTACCAGAGAGCTGCGCCTTCCCGTTaGTTGCTTGGGGAAACAGGTGCTCGGAGGTGGAAG +
Preference number: 6 (lower is better)
Translates to: CWLAYQRAAPSR*LLGETGARRWK
Trigger: CTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 72 bp GGACACTCCTTACTGACAACTCTGCGGCAGAGCTGCTaGCTGGCCTACCAGAGAGCTGCGCCTTCCCGTTGG +
Preference number: 6 (lower is better)
Translates to: GHSLLTTLRQSC*LAYQRAAPSRW
Trigger: CCAACGGGAAGGCGCAGCTCTCTGGTAGGCCAGCCAGCAGCTCTGCCGCAGAGTTGTCAGTAAGGAGTGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CAA 72 bp TGGCCTACCAGAGAGCTGCGCCTTCCCGTTGGTTGCTaGGGGAAACAGGTGCTCGGAGGTGGAAGGGTCGAG +
Preference number: 6 (lower is better)
Translates to: WPTRELRLPVGC*GKQVLGGGRVE
Trigger: CTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGAAGGCGCAGCTCTCTGGTAGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 72 bp CGCACTGCAGACAGCACCACTTCTGGGGATTCAGGATaGAGTGGTCCTGGGCGAGCCGTAACCGCCCTACAT +
Preference number: 6 (lower is better)
Translates to: RTADSTTSGDSG*SGPGRAVTALH
Trigger: ATGTAGGGCGGTTACGGCTCGCCCAGGACCACTCCATCCTGAATCCCCAGAAGTGGTGCTGTCTGCAGTGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000145314.2
CDS CCA 72 bp TGCAGACAGCACCACTTCTGGGGATTCAGGATGGAGTaGTCCTGGGCGAGCCGTAACCGCCCTACATGTTTG +
Preference number: 6 (lower is better)
Translates to: CRQHHFWGFRME*SWASRNRPTCL
Trigger: CAAACATGTAGGGCGGTTACGGCTCGCCCAGGACCACTCCATCCTGAATCCCCAGAAGTGGTGCTGTCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000145314.2
CDS CCA 72 bp TCCCGTTGGTTGCTTGGGGAAACAGGTGCTCGGAGGTaGAAGGGTCGAGGTTCAGGAAACATTCCCGGAACT +
Preference number: 6 (lower is better)
Translates to: SRWLLGETGARR*KGRGSGNIPGT
Trigger: AGTTCCGGGAATGTTTCCTGAACCTCGACCCTTCCACCTCCGAGCACCTGTTTCCCCAAGCAACCAACGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS TCA 72 bp GCTGCTGGAGTGCACCTGAGCTTGGAGATGGGGTTCTaGGAGTTTTGCGCTGCCCTGAACTGTTCTTCGAGT +
Preference number: 6 (lower is better)
Translates to: AAGVHLSLEMGF*EFCAALNCSSS
Trigger: ACTCGAAGAACAGTTCAGGGCAGCGCAAAACTCTCAGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp GTGGAACCCTCAGACTCAAGTTCCTGCTGCACCTTGTaGAGCAGTTCGCAGAGAAATTCCTGCGCATCCTGC +
Preference number: 6 (lower is better)
Translates to: VEPSDSSSCCTL*SSSQRNSCASC
Trigger: GCAGGATGCGCAGGAATTTCTCTGCGAACTGCTGCACAAGGTGCAGCAGGAACTTGAGTCTGAGGGTTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp GTCAGGGCAATGTGTATGTTCTGCGTTCGTCCTTGCTaGTGGAGTGCACCTGAGCTTGGAGATGGGGTTCTG +
Preference number: 6 (lower is better)
Translates to: VRAMCMFCVRPC*WSAPELGDGVL
Trigger: CAGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAGCAAGGACGAACGCAGAACATACACATTGCCCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS CAA 72 bp TTCCTGGCAAGCCCAAGAGGAGACCTGGAGGCCGTTTaGATGCTTGCCTCCCAGTCAGGGCAATGTGTATGT +
Preference number: 6 (lower is better)
Translates to: FLASPRGDLEAV*MLASQSGQCVC
Trigger: ACATACACATTGCCCTGACTGGGAGGCAAGCATCAAAACGGCCTCCAGGTCTCCTCTTGGGCTTGCCAGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS CAA 90 bp GAGGTTCAGGAAACATTCCCGGAACTTCTGGAGGTGGCTGAGCACTaGGAGGATGGAGTTCATGTAGCAGGTATTCCCCAGGTTGCGCAG +
Preference number: 6 (lower is better)
Translates to: EVQETFPELLEVAEH*EDGVHVAGIPQVAQ
Trigger: CTGCGCAACCTGGGGAATACCTGCTACATGAACTCCATCCTCCAAGTGCTCAGCCACCTCCAGAAGTTCCGGGAATGTTTCCTGAACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS TCA 72 bp TTCTCAGCAACTTCAGGTCCCCCTCCGGGTTGTCATTaGGCACGTAGTCCTTGCACAGGTAGCAGAACACGT +
Preference number: 6 (lower is better)
Translates to: FSATSGPPPGCH*ARSPCTGSRTR
Trigger: ACGTGTTCTGCTACCTGTGCAAGGACTACGTGCTCAATGACAACCCGGAGGGGGACCTGAAGTTGCTGAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS GCA 72 bp ATCCTGCGTGTGGAACCCTCAGACTCAAGTTCCTGCTaGACCTTGTGCAGCAGTTCGCAGAGAAATTCCTGC +
Preference number: 6 (lower is better)
Translates to: ILRVEPSDSSSC*TLCSSSQRNSC
Trigger: GCAGGAATTTCTCTGCGAACTGCTGCACAAGGTGCAGCAGGAACTTGAGTCTGAGGGTTCCACACGCAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp AGGATCCTGCGTGTGGAACCCTCAGACTCAAGTTCCTaGTGCACCTTGTGCAGCAGTTCGCAGAGAAATTCC +
Preference number: 6 (lower is better)
Translates to: RILRVEPSDSSS*CTLCSSSQRNS
Trigger: GGAATTTCTCTGCGAACTGCTGCACAAGGTGCAGCAGGAACTTGAGTCTGAGGGTTCCACACGCAGGATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp AAGCCCAAGAGGAGACCTGGAGGCCGTTTTGATGCTTaGCTCCCAGTCAGGGCAATGTGTATGTTCTGCGTT +
Preference number: 6 (lower is better)
Translates to: KPKRRPGGRFDA*LPVRAMCMFCV
Trigger: AACGCAGAACATACACATTGCCCTGACTGGGAGGCAAGCATCAAAACGGCCTCCAGGTCTCCTCTTGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS CCA 72 bp ACAGGTAGCAGAACACGTAGAGGTCCCGGACCTCCATaGCCAGCGGGTGTCCTGTCTCTTCAAAGTGTTTTA +
Preference number: 6 (lower is better)
Translates to: TGSRTRRGPGPP*PAGVLSLQSVL
Trigger: TAAAACACTTTGAAGAGACAGGACACCCGCTGGCCATGGAGGTCCGGGACCTCTACGTGTTCTGCTACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 72 bp GAAGGGTCGAGGTTCAGGAAACATTCCCGGAACTTCTaGAGGTGGCTGAGCACTTGGAGGATGGAGTTCATG +
Preference number: 6 (lower is better)
Translates to: EGSRFRKHSRNF*RWLSTWRMEFM
Trigger: CATGAACTCCATCCTCCAAGTGCTCAGCCACCTCCAGAAGTTCCGGGAATGTTTCCTGAACCTCGACCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 72 bp AGGGCAATGTGTATGTTCTGCGTTCGTCCTTGCTGCTaGAGTGCACCTGAGCTTGGAGATGGGGTTCTGAGA +
Preference number: 6 (lower is better)
Translates to: RAMCMFCVRPCC*SAPELGDGVLR
Trigger: TCTCAGAACCCCATCTCCAAGCTCAGGTGCACTCCAGCAGCAAGGACGAACGCAGAACATACACATTGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CCA 72 bp TTCACCACCTTTAAGACCTGTTTGGTGAGCTTCCTCTaGGAGAATGGGATGAGGATCCTGCGTGTGGAACCC +
Preference number: 6 (lower is better)
Translates to: FTTFKTCLVSFL*ENGMRILRVEP
Trigger: GGGTTCCACACGCAGGATCCTCATCCCATTCTCCCAGAGGAAGCTCACCAAACAGGTCTTAAAGGTGGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000024779.15
ENSMUST00000131550.2
ENSMUST00000152724.2
CDS GCA 72 bp CTTCCTCGACACTGCATACATCCAGCTTTGAGTCATTaGAGTGGACCCAAAAACCTCCCTCTGTGTTGTAGC +
Preference number: 6 (lower is better)
Translates to: LPRHCIHPALSH*SGPKNLPLCCS
Trigger: GCTACAACACAGAGGGAGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGGATGTATGCAGTGTCGAGGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024779.15
CDS CCA 72 bp ATTGCAGTGGACCCAAAAACCTGGTCAAAGATGACATaGACCCCAATCTTCTCACGATGGTTACGGCCAGAC +
Preference number: 6 (lower is better)
Translates to: IAVDPKTWSKMT*TPIFSRWLRPD
Trigger: GTCTGGCCGTAACCATCGTGAGAAGATTGGGGTCCATGTCATCTTTGACCAGGTTTTTGGGTCCACTGCAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS TCA 72 bp AACTTGGCTAGCATCTCAGTGAGCAGGCACTCTGTCTaGTTCAAAGGGACAAACCCCTTTTCTATGCAGTGG +
Preference number: 6 (lower is better)
Translates to: NLASISVSRHSV*FKGTNPFSMQW
Trigger: CCACTGCATAGAAAAGGGGTTTGTCCCTTTGAATCAGACAGAGTGCCTGCTCACTGAGATGCTAGCCAAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS CAA 72 bp TGCTTCCTAGCTTCACTCAGAACAAGGGGTTTGGGGTaGGACTTTCGTCGTTTGCTGTTACACTGGTCACAA +
Preference number: 6 (lower is better)
Translates to: CFLASLRTRGLG*DFRRLLLHWSQ
Trigger: TTGTGACCAGTGTAACAGCAAACGACGAAAGTCCAACCCCAAACCCCTTGTTCTGAGTGAAGCTAGGAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2
CDS GCA 72 bp CTTCCTCGACACTGCATACATCCAGCTTTGAGTCATTaGAGTGGACCCAAAAACCTGGTCAAAGATGACATG +
Preference number: 6 (lower is better)
Translates to: LPRHCIHPALSH*SGPKNLVKDDM
Trigger: CATGTCATCTTTGACCAGGTTTTTGGGTCCACTGCAATGACTCAAAGCTGGATGTATGCAGTGTCGAGGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152724.2
CDS TCA 72 bp CCAAAAGGGCTCAATGGTATTGGATTTATAATTGCATaGTATACATGTGACCTGACTGAGCAGCTGCCCATG +
Preference number: 6 (lower is better)
Translates to: PKGLNGIGFIIA*YTCDLTEQLPM
Trigger: CATGGGCAGCTGCTCAGTCAGGTCACATGTATATCATGCAATTATAAATCCAATACCATTGAGCCCTTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000024779.15
ENSMUST00000152724.2