RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USP43 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020905

Ensembl transcript IDs: ENSMUST00000021288.10, ENSMUST00000108677.2

Found 341 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGCATGTAAGCTAGGGGCACACAAGCTGGTGAGAGTGAGTATCTaGCGTGACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGG +
Preference number: 1 (lower is better)
Translates to: RACKLGAHKLVRVSI*RDIRVFLVDYGRPW
Trigger: CCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTCACGGCAGATACTCACTCTCACCAGCTTGTGTGCCCCTAGCTTACATGCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR TCA 90 bp AGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTaGCTGACTATGCAATGTAACAGGAATGAAGTGAGTCACTTTTCA +
Preference number: 1 (lower is better)
Translates to: RNNTGNCILIDSNKL*LTMQCNRNEVSHFS
Trigger: TGAAAAGTGACTCACTTCATTCCTGTTACATTGCATAGTCAGTCACAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR TCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTTTTCTTGGCATCTTTaGCACTTATCCAAGACAAGC +
Preference number: 2 (lower is better)
Translates to: SSLPSLAATVTLPSLTATFSWHL*HLSKTS
Trigger: GCTTGTCTTGGATAAGTGTCAAAGATGCCAAGAAAA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTTGACACCAGGTTATTaGAATATGACAAGAGTTACA +
Preference number: 2 (lower is better)
Translates to: SSLPSLAATVTLPSLTATLTPGY*NMTRVT
Trigger: TGTAACTCTTGTCATATTCCAATAACCTGGTGTCAA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGAGGCCACAAGTCAACTaGATTCTAGAAAATCCACTC +
Preference number: 2 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLRPQVN*ILENPL
Trigger: GAGTGGATTTTCTAGAATCCAGTTGACTTGTGGCCT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGGAACCCAACCACTTTaGCACCAGGTTATTGGAATA +
Preference number: 2 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQGTQPL*HQVIGI
Trigger: TATTCCAATAACCTGGTGTCAAAGTGGTTGGGTTCC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAAGGCCACAAGTCAACTaGATTCTAGAAAATCCACTC +
Preference number: 2 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQRPQVN*ILENPL
Trigger: GAGTGGATTTTCTAGAATCCAGTTGACTTGTGGCCT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGGAACCCAACCACTTTaGCACCAGGTTATTGGAATA +
Preference number: 2 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLGTQPL*HQVIGI
Trigger: TATTCCAATAACCTGGTGTCAAAGTGGTTGGGTTCC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGCTTGTCATGATAATTTaGGCTCAGCAGCACCGTCTA +
Preference number: 2 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLLVMII*AQQHRL
Trigger: TAGACGGTGCTGCTGAGCCCAAATTATCATGACAAG...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTTTTCTTGGCATCTTTaGCACTTATCCAAGACAAGC +
Preference number: 2 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLFSWHL*HLSKTS
Trigger: GCTTGTCTTGGATAAGTGTCAAAGATGCCAAGAAAA...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCTAGAAAATCCACTCTaGACACAAGAGCCTACAGAT +
Preference number: 2 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWALENPL*TQEPTD
Trigger: ATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCTAG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTTGACACCAGGTTATTaGAATATGACAAGAGTTACA +
Preference number: 2 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWALTPGY*NMTRVT
Trigger: TGTAACTCTTGTCATATTCCAATAACCTGGTGTCAA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR GCA 72 bp AAGCTAGGGGCACACAAGCTGGTGAGAGTGAGTATCTaGCGTGACATCAGAGTCTTTTTAGTAGACTATGGC +
Preference number: 3 (lower is better)
Translates to: KLGAHKLVRVSI*RDIRVFLVDYG
Trigger: GCCATAGTCTACTAAAAAGACTCTGATGTCACGGCAGATACTCACTCTCACCAGCTTGTGTGCCCCTAGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACCTTGTCATGATAATTaGGGCTCAGCAGCACCGTCT +
Preference number: 3 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQPCHDN*GSAAPS
Trigger: AGACGGTGCTGCTGAGCCCAAATTATCATGACAAGG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGGGAACCCAACCACTTaGACACCAGGTTATTGGAAT +
Preference number: 3 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQGNPTT*TPGYWN
Trigger: ATTCCAATAACCTGGTGTCAAAGTGGTTGGGTTCCC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR TCA 72 bp ACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTaGCTGACTATGCAATGTAACAGGAATGAAGTGAGT +
Preference number: 3 (lower is better)
Translates to: TGNCILIDSNKL*LTMQCNRNEVS
Trigger: ACTCACTTCATTCCTGTTACATTGCATAGTCAGTCACAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR CCA 72 bp AGCAATGGGAACCCAACCACTTTGACACCAGGTTATTaGAATATGACAAGAGTTACAGAGACCAAACTTTTC +
Preference number: 3 (lower is better)
Translates to: SNGNPTTLTPGY*NMTRVTETKLF
Trigger: GAAAAGTTTGGTCTCTGTAACTCTTGTCATATTCCAATAACCTGGTGTCAAAGTGGTTGGGTTCCCATTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR CCA 72 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTaGACTTACATACACCAAACACTAATTTTAGCCTTG +
Preference number: 3 (lower is better)
Translates to: DIRVFLVDYGRP*TYIHQTLILAL
Trigger: CAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCGGCCCCTCTCCCAGTaGGTTCCCCACGCCCGGATC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATRPLSQ*VPHARI
Trigger: GATCCGGGCGTGGGGAACGCACTGGGAGAGGGGCCG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTGGCCGGGCCCCGCCTTaGAGTTGGTGCTCCTCCGTG +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATGRAPP*SWCSSV
Trigger: CACGGAGGAGCACCAACTCCAAGGCGGGGCCCGGCC...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCCGAGCGGGAGCGGCTaGCCAGAGCTAGCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATPSGSG*PELAGS
Trigger: GCTTCCTGCTAGCTCTGGGCAGCCGCTCCCGCTCGG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCCAAACCTGCTCGCCTaGTGCCCTGAGCCCACCAGG +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATPNLLA*CPEPTR
Trigger: CCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTGGGAGGCAGATCGGCTaGTTCCAGGAGGACCAAGGG +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATGRQIG*FQEDQG
Trigger: CCCTTGGTCCTCCTGGAAGCAGCCGATCTGCCTCCC...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGACCAGCGCCGCCAGCTaGTCGGTGACCTCGGCGCGG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLTSAAS*SVTSAR
Trigger: CCGCGCCGAGGTCACCGAGCAGCTGGCGGCGCTGGT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCCTGGCCTCCTGAGGTaGAAAGCCCTGTCAACTGCC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATPGLLR*KALSTA
Trigger: GGCAGTTGACAGGGCTTTGCACCTCAGGAGGCCAGG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCCGCCACACACTGTCTaGATCCTGGACCCGTTCCTC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATPPHTV*ILDPFL
Trigger: GAGGAACGGGTCCAGGATGCAGACAGTGTGTGGCGG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTGGTGTGCCTGCTGCTaGCGCCACACACTGTCTGCA +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATWCACC*RHTLSA
Trigger: TGCAGACAGTGTGTGGCGGCAGCAGCAGGCACACCA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTCCACAGACTCAGCTTaGCCACACCCTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATSTDSA*PHPAGG
Trigger: TCCTCCAGCAGGGTGTGGTCAAGCTGAGTCTGTGGA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGACCAGCGCCGCCAGCTaGTCGGTGACCTCGGCGCGG +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRTSAAS*SVTSAR
Trigger: CCGCGCCGAGGTCACCGAGCAGCTGGCGGCGCTGGT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCGAATCCTGAGGGCCTaGTCATTCATGGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATRILRA*SFMAAG
Trigger: CCCTGCTGCCATGAATGAGCAGGCCCTCAGGATTCG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTACCCTGTTCTCGCTGTaGAGAGGCCCAGAGAATCGC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATTLFSL*RGPENR
Trigger: GCGATTCTCTGGGCCTCTCCACAGCGAGAACAGGGT...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTAGGAATGGTCCTTTGTaGGGTGCCAGCTGTACTGGC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATRNGPL*GASCTG
Trigger: GCCAGTACAGCTGGCACCTCACAAAGGACCATTCCT...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCAAGATCACCTCCTCTaGAGGGACACCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATQDHLL*RDTSFL
Trigger: GAGGAAGGAGGTGTCCCTGCAGAGGAGGTGATCTTG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTGGTCCTTTGTGAGGTaGCAGCTGTACTGGCTCGAG +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATWSFVR*QLYWLE
Trigger: CTCGAGCCAGTACAGCTGGCACCTCACAAAGGACCA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTAACTCTGCGGAAAGTTaGGGCGTGTATTCGCGCGTC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATNSAES*GVYSRV
Trigger: GACGCGCGAATACACGCCCCAACTTTCCGCAGAGTT...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCTCAAGAATCTCGTCTaGCGCAAGGGGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATLKNLV*RKGMGR
Trigger: CCTTCCCATCCCCTTGCGCCAGACGAGATTCTTGAG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTAAACCGCTGGCTCTTTaGGGGGAACACCAAAGTGAC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATKPLAL*GEHQSD
Trigger: GTCACTTTGGTGTTCCCCTCAAAGAGCCAGCGGTTT...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCTGAGGGCATCACAGTaGGGGGCAGGTCAAACTTTT +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATLRASQ*GAGQTF
Trigger: AAAAGTTTGACCTGCCCCTCACTGTGATGCCCTCAG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCCAAACCTGCTCGCCTaGTGCCCTGAGCCCACCAGG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLPNLLA*CPEPTR
Trigger: CCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTTGGAGATAAGTAGCTaGAGGCCAAGGAGAGCCCCA +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATLEISS*RPRRAP
Trigger: TGGGGCTCTCCTTGGCCTGCAGCTACTTATCTCCAA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGGCTGCTGGTGTGCCTaGTGCTGCCGCCACACACTG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLGCWCA*CCRHTL
Trigger: CAGTGTGTGGCGGCAGCAGCAGGCACACCAGCAGCC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTGTTGAGTCCAGACAGTaGGAACTTCACCAGCGTGGA +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATVESRQ*ELHQRG
Trigger: TCCACGCTGGTGAAGTTCCCACTGTCTGGACTCAAC...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTTGTTCCTTGCCCAATaGCTCGACCGCTGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATLFLAQ*LDRCLH
Trigger: GTGAAGACAGCGGTCGAGCCATTGGGCAAGGAACAA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCTGAGAATACACTGTTaGAGCTGGGCCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATLRIHC*SWAQEI
Trigger: AATCTCCTGGGCCCAGCTTCAACAGTGTATTCTCAG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTGTGTTGCTGAGACACTaGACCACCGCGTTCATGAAA +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATVLLRH*TTAFMK
Trigger: TTTCATGAACGCGGTGGTGCAGTGTCTCAGCAACAC...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTAATTCCAGGGCATCGTaGTGGGAATTGCCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATNSRAS*WELPWN
Trigger: GTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATT...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTGATCTTACTCACTTCTaGGGGCAGCTGCTCAGATAC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATDLTHF*GQLLRY
Trigger: GTATCTGAGCAGCTGCCCCCAGAAGTGAGTAAGATC...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCGTCCAGGGTACAGCTaGGCTGCTGGTGTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLRPGYS*AAGVPA
Trigger: AGCAGGCACACCAGCAGCCCAGCTGTACCCTGGACG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGAGTCCAGCGGGTAGGTaGTGGGGAGGCAGATCGGCT +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLSPAGR*WGGRSA
Trigger: AGCCGATCTGCCTCCCCACCACCTACCCGCTGGACT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGCCCAGGCCCTTGGCTaGGCTCTCTCGAATCCTGAG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLAQALG*ALSNPE
Trigger: CTCAGGATTCGAGAGAGCCCAGCCAAGGGCCTGGGC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGCAGGTCGGTGTTGCTaGGACACTGCACCACCGCGT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRAGRCC*DTAPPR
Trigger: ACGCGGTGGTGCAGTGTCTCAGCAACACCGACCTGC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCGTCCCCAGACCAGGTaGAGGAGGGACTTGGAAAGC +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLRPQTR*RRDLES
Trigger: GCTTTCCAAGTCCCTCCTTCACCTGGTCTGGGGACG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCACATTGTCACCCTCTaGAATGGTATTCAGGTCCTC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATHIVTL*NGIQVL
Trigger: GAGGACCTGAATACCATTGCAGAGGGTGACAATGTG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGAGGGTACAGCTGGGCTaGTGGTGTGCCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRRVQLG*WCACCC
Trigger: GCAGCAGCAGGCACACCAGCAGCCCAGCTGTACCCT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTCACTCTCTGCAGGGTaGCATAAGAAATCTGTTCCC +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATSLSAG*HKKSVP
Trigger: GGGAACAGATTTCTTATGGCACCCTGCAGAGAGTGA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGTGGACCCGTTCCTCCTaGAGGCTCCCAAACAGGCGC +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRWTRSS*RLPNRR
Trigger: GCGCCTGTTTGGGAGCCTCCAGGAGGAACGGGTCCA...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGAGTCCAGCGGGTAGGTaGTGGGGAGGCAGATCGGCT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRSPAGR*WGGRSA
Trigger: AGCCGATCTGCCTCCCCACCACCTACCCGCTGGACT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGACCCCAGGGCTGGATaGTGGTTGAGGTGGCATGAG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLDPRAG*WLRWHE
Trigger: CTCATGCCACCTCAACCACCATCCAGCCCTGGGGTC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCAAGGTGTCATCTTCTaGCCCTCAGGGCGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLQGVIF*PSGRAG
Trigger: GCCAGCTCGCCCTGAGGGCCAGAAGATGACACCTTG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGGGCCTGCTCATTCATaGCAGCAGGGCTCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRGPAHS*QQGSAG
Trigger: ACCGGCTGAGCCCTGCTGCCATGAATGAGCAGGCCC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGGTTGCCCAGGCCCTTaGCTGGGCTCTCTCGAATCC +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRGCPGP*LGSLES
Trigger: GGATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGTCAGATACCAGCCCGTaGGCTGAGCCTTCCAAGTCC +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLSDTSP*AEPSKS
Trigger: GGACTTGGAAGGCTCAGCTCACGGGCTGGTATCTGA...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGTGGTGTGCCTGCTGCTaGCGCCACACACTGTCTGCA +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRWCACC*RHTLSA
Trigger: TGCAGACAGTGTGTGGCGGCAGCAGCAGGCACACCA...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGCTGGGCTGCTGGTGTaGCTGCTGCTGCCGCCACAC +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQAGLLV*LLLPPH
Trigger: GTGTGGCGGCAGCAGCAGGCACACCAGCAGCCCAGC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGTGAGGGCACTTCCATaGATCATCCTGGGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLVRALP*IILGQL
Trigger: CAGCTGGCCCAGGATGATGCATGGAAGTGCCCTCAC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCGAATCCTGAGGGCCTaGTCATTCATGGCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLRILRA*SFMAAG
Trigger: CCCTGCTGCCATGAATGAGCAGGCCCTCAGGATTCG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTGGTGAAGGAGGGACTTaGAAAGCATACACATTGTCA +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATGEGGT*KAYTLS
Trigger: TGACAATGTGTATGCTTTCCAAGTCCCTCCTTCACC...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCAAGGTGTCATCTTCTaGCCCTCAGGGCGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRQGVIF*PSGRAG
Trigger: GCCAGCTCGCCCTGAGGGCCAGAAGATGACACCTTG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTGGTTCTTCAAGCCCTaGGCGCCGGGCGGACGCGCC +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLWFFKP*APGGRA
Trigger: GGCGCGTCCGCCCGGCGCTCAGGGCTTGAAGAACCA...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGCACCACCGCGTTCATaGAACAGGTGTTGCCATGGT +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLAPPRS*NRCCHG
Trigger: ACCATGGCAACACCTGTTTCATGAACGCGGTGGTGC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAAGGCCGCCACTGTGCTaGGGATTGGCACGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQRPPLC*GLARPS
Trigger: GCTTGGCCGTGCCAATCCTCAGCACAGTGGCGGCCT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAACCAGACGGATGGGCTaGGAGCGTCCCCAGACCAGG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQTRRMG*ERPQTR
Trigger: CCTGGTCTGGGGACGCTCTCAGCCCATCCGTCTGGT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCAAGATCACCTCCTCTaGAGGGACACCTCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLQDHLL*RDTSFL
Trigger: GAGGAAGGAGGTGTCCCTGCAGAGGAGGTGATCTTG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGTTGGTGCTCCTCCGTaGTACATGGGGAGCCATGTT +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLVGAPP*YMGSHV
Trigger: AACATGGCTCCCCATGTAGCACGGAGGAGCACCAAC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGTGGTCCTTTGTGAGGTaGCAGCTGTACTGGCTCGAG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLWSFVR*QLYWLE
Trigger: CTCGAGCCAGTACAGCTGGCACCTCACAAAGGACCA...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCACTGTGCTGAGGATTaGCACGGCCAAGCCAACACG +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRHCAED*HGQANT
Trigger: CGTGTTGGCTTGGCCGTGCCAATCCTCAGCACAGTG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGACCCTGTTCTCGCTGTaGAGAGGCCCAGAGAATCGC +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRTLFSL*RGPENR
Trigger: GCGATTCTCTGGGCCTCTCCACAGCGAGAACAGGGT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGTACAGCTGGGCTGCTaGTGTGCCTGCTGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQVQLGC*CACCCR
Trigger: GCGGCAGCAGCAGGCACACCAGCAGCCCAGCTGTAC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTCCAGCTGTTCCTCCTTaGTATAGGACTGAAAACATT +
Preference number: 4 (lower is better)
Translates to: SSLPSLAATVTLPSLTATPAVPP*YRTENI
Trigger: AATGTTTTCAGTCCTATACCAAGGAGGAACAGCTGG...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACCAGCGGGTAGGTGGTaGGGAGGCAGATCGGCTGCT +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQPAGRW*GGRSAA
Trigger: AGCAGCCGATCTGCCTCCCCACCACCTACCCGCTGG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGAGCGGCACAATGGACTaGCTGGTAGAACGGGGTCTT +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLSGTMD*LVERGL
Trigger: AAGACCCCGTTCTACCAGCCAGTCCATTGTGCCGCT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCTCTGGCTTCCCACCTaGCTACTTCCCTTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLLWLPT*LLPFQG
Trigger: ACCTTGGAAGGGAAGTAGCCAGGTGGGAAGCCAGAG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGCTCGCCTGCTGCCCTaGGCCCACCAGGTTACAGAA +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQARLLP*AHQVTE
Trigger: TTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAACAGCCAGCTTGACATaGGGAGGGCCTCCTGGCCTC +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQTASLT*GGPPGL
Trigger: GAGGCCAGGAGGCCCTCCTCATGTCAAGCTGGCTGT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCAAACAGGCGCTCTGTaGCAGAGCTGTCCCATTCCA +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRQTGAL*QSCPIP
Trigger: TGGAATGGGACAGCTCTGTCACAGAGCGCCTGTTTG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGAGGAATGGTCCTTTGTaGGGTGCCAGCTGTACTGGC +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRRNGPL*GASCTG
Trigger: GCCAGTACAGCTGGCACCTCACAAAGGACCATTCCT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCATCGTGCTGGGAATTaGCTTGGAACTGGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLHRAGN*LGTGSH
Trigger: ATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGTTGGTGCTCCTCCGTaGTACATGGGGAGCCATGTT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRVGAPP*YMGSHV
Trigger: AACATGGCTCCCCATGTAGCACGGAGGAGCACCAAC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCTCAAGAATCTCGTCTaGCGCAAGGGGATGGGAAGG +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRLKNLV*RKGMGR
Trigger: CCTTCCCATCCCCTTGCGCCAGACGAGATTCTTGAG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCCTTGCAGACTGCCATaGTGGTTGCAGACAGCATAC +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLPCRLP*WLQTAY
Trigger: GTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021288.10
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCTCTGGCTTCCCACCTaGCTACTTCCCTTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRLWLPT*LLPFQG
Trigger: ACCTTGGAAGGGAAGTAGCCAGGTGGGAAGCCAGAG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGGGCCTGCTCATTCATaGCAGCAGGGCTCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQGPAHS*QQGSAG
Trigger: ACCGGCTGAGCCCTGCTGCCATGAATGAGCAGGCCC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGCCCAGGCCCTTGGCTaGGCTCTCTCGAATCCTGAG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQAQALG*ALSNPE
Trigger: CTCAGGATTCGAGAGAGCCCAGCCAAGGGCCTGGGC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTGGTTCTTCAAGCCCTaGGCGCCGGGCGGACGCGCC +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAWFFKP*APGGRA
Trigger: GGCGCGTCCGCCCGGCGCTCAGGGCTTGAAGAACCA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGACCTGTACTGTGCTTaGAAGTGGCTCTGCACAAAG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLDLYCA*KWLCTK
Trigger: CTTTGTGCAGAGCCACTTTCAAGCACAGTACAGGTC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGAGGCCGCCACTGTGCTaGGGATTGGCACGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLRPPLC*GLARPS
Trigger: GCTTGGCCGTGCCAATCCTCAGCACAGTGGCGGCCT...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGACCAGACGGATGGGCTaGGAGCGTCCCCAGACCAGG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLTRRMG*ERPQTR
Trigger: CCTGGTCTGGGGACGCTCTCAGCCCATCCGTCTGGT...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGAGTCTCATGAGCCAATaGTCAGACAAGGAGGAGCTG +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLSLMSQ*SDKEEL
Trigger: CAGCTCCTCCTTGTCTGATCATTGGCTCATGAGACT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGTGGTTGAGGTGGCATaGGGAAAGGGGCACCCCAGT +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQVVEVA*GKGHPS
Trigger: ACTGGGGTGCCCCTTTCCTCATGCCACCTCAACCAC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGGAAGACCTGTACTGTaGTTGAAAGTGGCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLGRPVL*LKVALH
Trigger: GTGCAGAGCCACTTTCAAGCACAGTACAGGTCTTCC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACCTGGCCTCCTGAGGTaGAAAGCCCTGTCAACTGCC +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQPGLLR*KALSTA
Trigger: GGCAGTTGACAGGGCTTTGCACCTCAGGAGGCCAGG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACCGCCACACACTGTCTaGATCCTGGACCCGTTCCTC +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQPPHTV*ILDPFL
Trigger: GAGGAACGGGTCCAGGATGCAGACAGTGTGTGGCGG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGGCTGCTGGTGTGCCTaGTGCTGCCGCCACACACTG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLGCWCA*CCRHTL
Trigger: CAGTGTGTGGCGGCAGCAGCAGGCACACCAGCAGCC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACTGTCAACTGCCCAGTaGCAAAGGGGCCGGTTGTCC +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQLSTAQ*QRGRLS
Trigger: GGACAACCGGCCCCTTTGCCACTGGGCAGTTGACAG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGTCTGTTCCCCAGGAATaGTCCTTTGTGAGGTGCCAG +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRSVPQE*SFVRCQ
Trigger: CTGGCACCTCACAAAGGACCATTCCTGGGGAACAGA...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGCTCGCCTGCTGCCCTaGGCCCACCAGGTTACAGAA +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLARLLP*AHQVTE
Trigger: TTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCTGAGAATACACTGTTaGAGCTGGGCCCAGGAGATT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRLRIHC*SWAQEI
Trigger: AATCTCCTGGGCCCAGCTTCAACAGTGTATTCTCAG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAATTCCACAGCCAGCTTaGCATGAGGAGGGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQIPQPA*HEEGLL
Trigger: CAGGAGGCCCTCCTCATGTCAAGCTGGCTGTGGAAT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGAGTCTCATGAGCCAATaGTCAGACAAGGAGGAGCTG +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRSLMSQ*SDKEEL
Trigger: CAGCTCCTCCTTGTCTGATCATTGGCTCATGAGACT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCCGAGCGGGAGCGGCTaGCCAGAGCTAGCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAPSGSG*PELAGS
Trigger: GCTTCCTGCTAGCTCTGGGCAGCCGCTCCCGCTCGG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTGCTGGGCTGCTGGTGTaGCTGCTGCTGCCGCCACAC +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAAGLLV*LLLPPH
Trigger: GTGTGGCGGCAGCAGCAGGCACACCAGCAGCCCAGC...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGGGAGGCAGATCGGCTaGTTCCAGGAGGACCAAGGG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLGRQIG*FQEDQG
Trigger: CCCTTGGTCCTCCTGGAAGCAGCCGATCTGCCTCCC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGACTGCCATGGTGGTTaGAGACAGCATACAAGTCGT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRDCHGG*RQHTSR
Trigger: ACGACTTGTATGCTGTCTGCAACCACCATGGCAGTC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGCCCACCTTGCAGACTaGCATGGTGGTTGCAGACAG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQAHLAD*HGGCRQ
Trigger: CTGTCTGCAACCACCATGGCAGTCTGCAAGGTGGGC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021288.10
CDS-3UTR GCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCGTGTCCTGGCAGTGTaGAGACTGTCATCTAAAGAC +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRRVLAV*RLSSKD
Trigger: GTCTTTAGATGACAGTCTGCACACTGCCAGGACACG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACACTGTGCTGAGGATTaGCACGGCCAAGCCAACACG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQHCAED*HGQANT
Trigger: CGTGTTGGCTTGGCCGTGCCAATCCTCAGCACAGTG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTGGACCCGTTCCTCCTaGAGGCTCCCAAACAGGCGC +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLWTRSS*RLPNRR
Trigger: GCGCCTGTTTGGGAGCCTCCAGGAGGAACGGGTCCA...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAACACTGTCTGCATCCTaGACCCGTTCCTCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQTLSAS*TRSSWR
Trigger: CCTCCAGGAGGAACGGGTCCAGGATGCAGACAGTGT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGTGCAGACTGCCATGGTaGTTGCAGACAGCATACAAG +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRCRLPW*LQTAYK
Trigger: CTTGTATGCTGTCTGCAACCACCATGGCAGTCTGCA...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGAACGGGGTCTTCTTCTaGACTCTAGGTATTCCACCA +
Preference number: 4 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLNGVFF*TLGIPP
Trigger: TGGTGGAATACCTAGAGTCCAGAAGAAGACCCCGTT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGGTTGCCCAGGCCCTTaGCTGGGCTCTCTCGAATCC +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLGCPGP*LGSLES
Trigger: GGATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAATGTCCCTCTCCATGTaGTTGCCCAGGCCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQMSLSM*LPRPLA
Trigger: AGCCAAGGGCCTGGGCAACCACATGGAGAGGGACAT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGCACCACCGCGTTCATaGAACAGGTGTTGCCATGGT +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQAPPRS*NRCCHG
Trigger: ACCATGGCAACACCTGTTTCATGAACGCGGTGGTGC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGAGGGGAACACCAAAGTaGCACTCAAGAATCTCGTCT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRRGTPK*HSRISS
Trigger: AGACGAGATTCTTGAGTGTCACTTTGGTGTTCCCCT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGGCTCCCGAGTCTCATaGGCCAATGATCAGACAAGG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQGSRVS*ANDQTR
Trigger: CCTTGTCTGATCATTGGCTCATGAGACTCGGGAGCC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGTGGTTGAGGTGGCATaGGGAAAGGGGCACCCCAGT +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLVVEVA*GKGHPS
Trigger: ACTGGGGTGCCCCTTTCCTCATGCCACCTCAACCAC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCACATTGTCACCCTCTaGAATGGTATTCAGGTCCTC +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRHIVTL*NGIQVL
Trigger: GAGGACCTGAATACCATTGCAGAGGGTGACAATGTG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACTGACCAGGGAGGGATaGTGTTCCGCTTCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQLTREG*CSASGR
Trigger: TCTACCAGAAGCGGAACAGCATCCCTCCCTGGTCAG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTAGGACGATCTGGCCCTaGACTCCCGGCAGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWARTIWP*TPGRGW
Trigger: CCAGCCTCTGCCGGGAGTCCAGGGCCAGATCGTCCT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGTGCTGGGAATTGCCTTaGAACTGGGAGCCATACTTA +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRCWELP*NWEPYL
Trigger: TAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCA...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACTCCTCCGTGCTACATaGGGAGCCATGTTGAGTCCA +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQLLRAT*GAMLSP
Trigger: TGGACTCAACATGGCTCCCCATGTAGCACGGAGGAG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCCAGCGGGTAGGTGGTaGGGAGGCAGATCGGCTGCT +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAPAGRW*GGRSAA
Trigger: AGCAGCCGATCTGCCTCCCCACCACCTACCCGCTGG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACCTCCCTTGTCCTGGTaGCAGACACCATTGGTGAAG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQPPLSW*QTPLVK
Trigger: CTTCACCAATGGTGTCTGCCACCAGGACAAGGGAGG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGCCTAAGGAAAGGGTGTaGTATTTCACTCTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRPKERV*YFTLCR
Trigger: CCTGCAGAGAGTGAAATACCACACCCTTTCCTTAGG...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTCAGATACCAGCCCGTaGGCTGAGCCTTCCAAGTCC +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLSDTSP*AEPSKS
Trigger: GGACTTGGAAGGCTCAGCTCACGGGCTGGTATCTGA...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTAGGGTACAGCTGGGCTaGTGGTGTGCCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWARVQLG*WCACCC
Trigger: GCAGCAGCAGGCACACCAGCAGCCCAGCTGTACCCT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGTGAGGGCACTTCCATaGATCATCCTGGGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLVRALP*IILGQL
Trigger: CAGCTGGCCCAGGATGATGCATGGAAGTGCCCTCAC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGACCGCTGGAATCCATTaGGATACAGTTCAACCAAGA +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRTAGIH*DTVQPR
Trigger: TCTTGGTTGAACTGTATCCCAATGGATTCCAGCGGT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGTGTCACCCTCTGCAATaGTATTCAGGTCCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRCHPLQ*YSGPLH
Trigger: ATGAAGAGGACCTGAATACCATTGCAGAGGGTGACA...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCGTCCAGGGTACAGCTaGGCTGCTGGTGTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWARPGYS*AAGVPA
Trigger: AGCAGGCACACCAGCAGCCCAGCTGTACCCTGGACG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGTTGAGTCCAGACAGTaGGAACTTCACCAGCGTGGA +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQVESRQ*ELHQRG
Trigger: TCCACGCTGGTGAAGTTCCCACTGTCTGGACTCAAC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAATTGTTCCTTGCCCAATaGCTCGACCGCTGTCTTCAC +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQLFLAQ*LDRCLH
Trigger: GTGAAGACAGCGGTCGAGCCATTGGGCAAGGAACAA...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAATCTGTTCCCCAGGAATaGTCCTTTGTGAGGTGCCAG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQSVPQE*SFVRCQ
Trigger: CTGGCACCTCACAAAGGACCATTCCTGGGGAACAGA...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTGGCCGGAGGTCCTCTaGGATCTTACTCACTTCTGG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLWPEVL*DLTHFW
Trigger: CCAGAAGTGAGTAAGATCTCAGAGGACCTCCGGCCA...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGCAAACAGGCGCTCTGTaGCAGAGCTGTCCCATTCCA +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLQTGAL*QSCPIP
Trigger: TGGAATGGGACAGCTCTGTCACAGAGCGCCTGTTTG...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTGGAGGACTTGGCAGTaGGGGCACTTCCATGCATCA +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLWRTWQ*GHFHAS
Trigger: TGATGCATGGAAGTGCCCTCACTGCCAAGTCCTCCA...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGCATGGGGAGCCATGTTaGGTCCAGACAGTGGGAACT +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLHGEPC*VQTVGT
Trigger: AGTTCCCACTGTCTGGACTCAACATGGCTCCCCATG...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGCTGACCAGGGAGGGATaGTGTTCCGCTTCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLLTREG*CSASGR
Trigger: TCTACCAGAAGCGGAACAGCATCCCTCCCTGGTCAG...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCTGTCAACTGCCCAGTaGCAAAGGGGCCGGTTGTCC +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWALSTAQ*QRGRLS
Trigger: GGACAACCGGCCCCTTTGCCACTGGGCAGTTGACAG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGCTCCTCCGTGCTACATaGGGAGCCATGTTGAGTCCA +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLLLRAT*GAMLSP
Trigger: TGGACTCAACATGGCTCCCCATGTAGCACGGAGGAG...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGCCTCCCTTGTCCTGGTaGCAGACACCATTGGTGAAG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLPPLSW*QTPLVK
Trigger: CTTCACCAATGGTGTCTGCCACCAGGACAAGGGAGG...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGACTCCTCCCTTGTCCTaGTGGCAGACACCATTGGTG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLTPPLS*WQTPLV
Trigger: CACCAATGGTGTCTGCCACCAGGACAAGGGAGGAGT...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAAGGGGAACACCAAAGTaGCACTCAAGAATCTCGTCT +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQRGTPK*HSRISS
Trigger: AGACGAGATTCTTGAGTGTCACTTTGGTGTTCCCCT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGAAACCGCTGGCTCTTTaGGGGGAACACCAAAGTGAC +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLKPLAL*GEHQSD
Trigger: GTCACTTTGGTGTTCCCCTCAAAGAGCCAGCGGTTT...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAACTCTTCATCAAAGAATaGCCGCTGGAATCCATTGGG +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQLFIKE*PLESIG
Trigger: CCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAG...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTCCACAGACTCAGCTTaGCCACACCCTGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWASTDSA*PHPAGG
Trigger: TCCTCCAGCAGGGTGTGGTCAAGCTGAGTCTGTGGA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGACCGTTTCAGATGGATaGTCAGGATGTCGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLTVSDG*SGCRAE
Trigger: CTCTGCCCGACATCCTGATCATCCATCTGAAACGGT...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGCTTCTCTCTCCCACCTaGCAGAACCGTTTCAGATGG +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLLLSPT*QNRFRW
Trigger: CCATCTGAAACGGTTCTGTCAGGTGGGAGAGAGAAG...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAAGCATTCTTGAACTCTaGGGAAAGTTGGGGCGTGTA +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQSILEL*GKLGRV
Trigger: TACACGCCCCAACTTTCCGCAGAGTTCAAGAATGCT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGCATCGTGCTGGGAATTaGCTTGGAACTGGGAGCCAT +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLHRAGN*LGTGSH
Trigger: ATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATG...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAATGCTGGGAATTGCCTTaGAACTGGGAGCCATACTTA +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQCWELP*NWEPYL
Trigger: TAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCA...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTACACTGTCTGCATCCTaGACCCGTTCCTCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWATLSAS*TRSSWR
Trigger: CCTCCAGGAGGAACGGGTCCAGGATGCAGACAGTGT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAAACGGGGTCTTCTTCTaGACTCTAGGTATTCCACCA +
Preference number: 4 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQNGVFF*TLGIPP
Trigger: TGGTGGAATACCTAGAGTCCAGAAGAAGACCCCGTT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTATGTCCCTCTCCATGTaGTTGCCCAGGCCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAMSLSM*LPRPLA
Trigger: AGCCAAGGGCCTGGGCAACCACATGGAGAGGGACAT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGCTTGCAGACTGCCATaGTGGTTGCAGACAGCATAC +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLACRLP*WLQTAY
Trigger: GTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTGGCCGGAGGTCCTCTaGGATCTTACTCACTTCTGG +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAWPEVL*DLTHFW
Trigger: CCAGAAGTGAGTAAGATCTCAGAGGACCTCCGGCCA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTGGAGGACTTGGCAGTaGGGGCACTTCCATGCATCA +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAWRTWQ*GHFHAS
Trigger: TGATGCATGGAAGTGCCCTCACTGCCAAGTCCTCCA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCATGGGGAGCCATGTTaGGTCCAGACAGTGGGAACT +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAHGEPC*VQTVGT
Trigger: AGTTCCCACTGTCTGGACTCAACATGGCTCCCCATG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGTGTTGCTGAGACACTaGACCACCGCGTTCATGAAA +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLVLLRH*TTAFMK
Trigger: TTTCATGAACGCGGTGGTGCAGTGTCTCAGCAACAC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGAATTCCAGGGCATCGTaGTGGGAATTGCCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLNSRAS*WELPWN
Trigger: GTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATT...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTAACTCTGCGGAAAGTTaGGGCGTGTATTCGCGCGTC +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWANSAES*GVYSRV
Trigger: GACGCGCGAATACACGCCCCAACTTTCCGCAGAGTT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTACTCCTCCCTTGTCCTaGTGGCAGACACCATTGGTG +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWATPPLS*WQTPLV
Trigger: CACCAATGGTGTCTGCCACCAGGACAAGGGAGGAGT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTAGCGGCACAATGGACTaGCTGGTAGAACGGGGTCTT +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWASGTMD*LVERGL
Trigger: AAGACCCCGTTCTACCAGCCAGTCCATTGTGCCGCT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTACCGTTTCAGATGGATaGTCAGGATGTCGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWATVSDG*SGCRAE
Trigger: CTCTGCCCGACATCCTGATCATCCATCTGAAACGGT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCTTCTCTCTCCCACCTaGCAGAACCGTTTCAGATGG +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWALLSPT*QNRFRW
Trigger: CCATCTGAAACGGTTCTGTCAGGTGGGAGAGAGAAG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
3UTR CAA 72 bp GCTGTATCAAAACCCAGCAATGGGAACCCAACCACTTaGACACCAGGTTATTGGAATATGACAAGAGTTACA +
Preference number: 4 (lower is better)
Translates to: AVSKPSNGNPTT*TPGYWNMTRVT
Trigger: TGTAACTCTTGTCATATTCCAATAACCTGGTGTCAAAGTGGTTGGGTTCCCATTGCTGGGTTTTGATACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTGATCTTACTCACTTCTaGGGGCAGCTGCTCAGATAC +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWADLTHF*GQLLRY
Trigger: GTATCTGAGCAGCTGCCCCCAGAAGTGAGTAAGATC...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGGTGAAGGAGGGACTTaGAAAGCATACACATTGTCA +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLGEGGT*KAYTLS
Trigger: TGACAATGTGTATGCTTTCCAAGTCCCTCCTTCACC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTGCAGACTGCCATGGTaGTTGCAGACAGCATACAAG +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWACRLPW*LQTAYK
Trigger: CTTGTATGCTGTCTGCAACCACCATGGCAGTCTGCA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR TCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCTCTTCATCAAAGAATaGCCGCTGGAATCCATTGGG +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWALFIKE*PLESIG
Trigger: CCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTAGCATTCTTGAACTCTaGGGAAAGTTGGGGCGTGTA +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWASILEL*GKLGRV
Trigger: TACACGCCCCAACTTTCCGCAGAGTTCAAGAATGCT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR GCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTCACTCTCTGCAGGGTaGCATAAGAAATCTGTTCCC +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWASLSAG*HKKSVP
Trigger: GGGAACAGATTTCTTATGGCACCCTGCAGAGAGTGA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTCAAAGAATGACCGCTaGAATCCATTGGGATACAGT +
Preference number: 4 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLSKNDR*NPLGYS
Trigger: ACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGA...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTGTCACCCTCTGCAATaGTATTCAGGTCCTCTTCAT +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWACHPLQ*YSGPLH
Trigger: ATGAAGAGGACCTGAATACCATTGCAGAGGGTGACA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CCA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTCAAAGAATGACCGCTaGAATCCATTGGGATACAGT +
Preference number: 4 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWASKNDR*NPLGYS
Trigger: ACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp ACAGCTGGGCTGCTGGTGTGCCTGCTGCTGCCGCCACACACTGTCTaGATCCTGGACCCGTTCCTCCTGGAGGCTCCCAAACAGGCGCTC +
Preference number: 5 (lower is better)
Translates to: TAGLLVCLLLPPHTV*ILDPFLLEAPKQAL
Trigger: GAGCGCCTGTTTGGGAGCCTCCAGGAGGAACGGGTCCAGGATGCAGACAGTGTGTGGCGGCAGCAGCAGGCACACCAGCAGCCCAGCTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp GGGAGGTGGAGAGAGCTGGGCGCAGATCTGATGTCCCTCTCCATGTaGTTGCCCAGGCCCTTGGCTGGGCTCTCTCGAATCCTGAGGGCC +
Preference number: 5 (lower is better)
Translates to: GRWRELGADLMSLSM*LPRPLAGLSRILRA
Trigger: GGCCCTCAGGATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACCACATGGAGAGGGACATCAGATCTGCGCCCAGCTCTCTCCACCTCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp GTCTGGTCTCAACTCCTCCCTTGTCCTGGTGGCAGACACCATTGGTaGAGACAGGAGAGTCGGGTACCCGGGCCATGGAGGGGCAGGGGG +
Preference number: 5 (lower is better)
Translates to: VWSQLLPCPGGRHHW*RQESRVPGPWRGRG
Trigger: CCCCCTGCCCCTCCATGGCCCGGGTACCCGACTCTCCTGTCTTCACCAATGGTGTCTGCCACCAGGACAAGGGAGGAGTTGAGACCAGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp TCTCCATGTGGTTGCCCAGGCCCTTGGCTGGGCTCTCTCGAATCCTaGGGGCCTGCTCATTCATGGCAGCAGGGCTCAGCCGGTCACTCC +
Preference number: 5 (lower is better)
Translates to: SPCGCPGPWLGSLES*GPAHSWQQGSAGHS
Trigger: GGAGTGACCGGCTGAGCCCTGCTGCCATGAATGAGCAGGCCCTCAGGATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACCACATGGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp GGAGGACCAAGGGCCGGGCCCCGCCTTGGAGTTGGTGCTCCTCCGTaGTACATGGGGAGCCATGTTGAGTCCAGACAGTGGGAACTTCAC +
Preference number: 5 (lower is better)
Translates to: GGPRAGPRLGVGAPP*YMGSHVESRQWELH
Trigger: GTGAAGTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGGGGCCCGGCCCTTGGTCCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp CAAGGGCCGGGCCCCGCCTTGGAGTTGGTGCTCCTCCGTGCTACATaGGGAGCCATGTTGAGTCCAGACAGTGGGAACTTCACCAGCGTG +
Preference number: 5 (lower is better)
Translates to: QGPGPALELVLLRAT*GAMLSPDSGNFTSV
Trigger: CACGCTGGTGAAGTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGGGGCCCGGCCCTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp TGCAGACAGCATACAAGTCGTAGAGGAAGTCCAGCGGGTAGGTGGTaGGGAGGCAGATCGGCTGCTTCCAGGAGGACCAAGGGCCGGGCC +
Preference number: 5 (lower is better)
Translates to: CRQHTSRRGSPAGRW*GGRSAASRRTKGRA
Trigger: GGCCCGGCCCTTGGTCCTCCTGGAAGCAGCCGATCTGCCTCCCCACCACCTACCCGCTGGACTTCCTCTACGACTTGTATGCTGTCTGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTCCCTCTCCATGTGGTaGCCCAGGCCCTTGGCTGGG +
Preference number: 5 (lower is better)
Translates to: SSLPSLAATVTLPSLTATSLSMW*PRPLAG
Trigger: CCCAGCCAAGGGCCTGGGCAACCACATGGAGAGGGA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp GGTTGCAGACAGCATACAAGTCGTAGAGGAAGTCCAGCGGGTAGGTaGTGGGGAGGCAGATCGGCTGCTTCCAGGAGGACCAAGGGCCGG +
Preference number: 5 (lower is better)
Translates to: GCRQHTSRRGSPAGR*WGGRSAASRRTKGR
Trigger: CCGGCCCTTGGTCCTCCTGGAAGCAGCCGATCTGCCTCCCCACCACCTACCCGCTGGACTTCCTCTACGACTTGTATGCTGTCTGCAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTGGTTGCCCAGGCCCTaGGCTGGGCTCTCTCGAATC +
Preference number: 5 (lower is better)
Translates to: SSLPSLAATVTLPSLTATWLPRP*AGLSRI
Trigger: GATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACCA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp CACCTCCTTCCTCTGCAACCATCTTCCTCAAGGCCGCCACTGTGCTaGGGATTGGCACGGCCAAGCCAACACGCAGAAACCGCTGGCTCT +
Preference number: 5 (lower is better)
Translates to: HLLPLQPSSSRPPLC*GLARPSQHAETAGS
Trigger: AGAGCCAGCGGTTTCTGCGTGTTGGCTTGGCCGTGCCAATCCTCAGCACAGTGGCGGCCTTGAGGAAGATGGTTGCAGAGGAAGGAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp AGGCGCTCTGTGACAGAGCTGTCCCATTCCACAGCCAGCTTGACATaGGGAGGGCCTCCTGGCCTCCTGAGGTGCAAAGCCCTGTCAACT +
Preference number: 5 (lower is better)
Translates to: RRSVTELSHSTASLT*GGPPGLLRCKALST
Trigger: AGTTGACAGGGCTTTGCACCTCAGGAGGCCAGGAGGCCCTCCTCATGTCAAGCTGGCTGTGGAATGGGACAGCTCTGTCACAGAGCGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp CACCAGTTCAACGGATGCCCCGGGACGTTTCTCCCTGTGTCCAAATaGCCACCTCAGGGGCATGGTCTTGAAGGGCCCATGCCTGGATCG +
Preference number: 5 (lower is better)
Translates to: HQFNGCPGTFLPVSK*PPQGHGLEGPMPGS
Trigger: CGATCCAGGCATGGGCCCTTCAAGACCATGCCCCTGAGGTGGTCATTTGGACACAGGGAGAAACGTCCCGGGGCATCCGTTGAACTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp CTGCCCAGTGGCAAAGGGGCCGGTTGTCCTTTGGAGATAAGTAGCTaGAGGCCAAGGAGAGCCCCACAACCCGGATGGAGAACAGAGTCC +
Preference number: 5 (lower is better)
Translates to: LPSGKGAGCPLEISS*RPRRAPQPGWRTES
Trigger: GGACTCTGTTCTCCATCCGGGTTGTGGGGCTCTCCTTGGCCTGCAGCTACTTATCTCCAAAGGACAACCGGCCCCTTTGCCACTGGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp GAGCCCACCAGGTTACAGAAGAGAAAGACCACCCTGTTCTCGCTGTaGAGAGGCCCAGAGAATCGCTGGCTGTCACGGACTGGCAAGCGC +
Preference number: 5 (lower is better)
Translates to: EPTRLQKRKTTLFSL*RGPENRWLSRTGKR
Trigger: GCGCTTGCCAGTCCGTGACAGCCAGCGATTCTCTGGGCCTCTCCACAGCGAGAACAGGGTGGTCTTTCTCTTCTGTAACCTGGTGGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp AGAGCTGTCCCATTCCACAGCCAGCTTGACATGAGGAGGGCCTCCTaGCCTCCTGAGGTGCAAAGCCCTGTCAACTGCCCAGTGGCAAAG +
Preference number: 5 (lower is better)
Translates to: RAVPFHSQLDMRRAS*PPEVQSPVNCPVAK
Trigger: CTTTGCCACTGGGCAGTTGACAGGGCTTTGCACCTCAGGAGGCCAGGAGGCCCTCCTCATGTCAAGCTGGCTGTGGAATGGGACAGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp CTCTGGCTTCCCACCTGGCTACTTCCCTTCCAAGGTGTCATCTTCTaGCCCTCAGGGCGAGCTGGCTTTTCATCCCCCACTGAGGGCATC +
Preference number: 5 (lower is better)
Translates to: LWLPTWLLPFQGVIF*PSGRAGFSSPTEGI
Trigger: GATGCCCTCAGTGGGGGATGAAAAGCCAGCTCGCCCTGAGGGCCAGAAGATGACACCTTGGAAGGGAAGTAGCCAGGTGGGAAGCCAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTGAACTCTGCGGAAAGTaGGGGCGTGTATTCGCGCGT +
Preference number: 5 (lower is better)
Translates to: SSLPSLAATVTLPSLTATELCGK*GRVFAR
Trigger: ACGCGCGAATACACGCCCCAACTTTCCGCAGAGTTC...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTACCAGCGTGGAGAGCTaGTTCCTTCTCTCTCCCACC +
Preference number: 5 (lower is better)
Translates to: SSLPSLAATVTLPSLTATTSVES*FLLSPT
Trigger: GGTGGGAGAGAGAAGGAACAAGCTCTCCACGCTGGT...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp CTTACTCACTTCTGGGGGCAGCTGCTCAGATACCAGCCCGTGAGCTaGGCCTTCCAAGTCCTCGTGGACACGATCCAGAAGCCAGAGCAG +
Preference number: 5 (lower is better)
Translates to: LTHFWGQLLRYQPVS*AFQVLVDTIQKPEQ
Trigger: CTGCTCTGGCTTCTGGATCGTGTCCACGAGGACTTGGAAGGCTCAGCTCACGGGCTGGTATCTGAGCAGCTGCCCCCAGAAGTGAGTAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp CCGCCTTGGAGTTGGTGCTCCTCCGTGCTACATGGGGAGCCATGTTaGGTCCAGACAGTGGGAACTTCACCAGCGTGGAGAGCTTGTTCC +
Preference number: 5 (lower is better)
Translates to: PPWSWCSSVLHGEPC*VQTVGTSPAWRACS
Trigger: GGAACAAGCTCTCCACGCTGGTGAAGTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp GGGCATGGTCTTGAAGGGCCCATGCCTGGATCGGGAAGCAGGAGATaGCTTCATGCTGATACTTCGGCCACCAACACCCCGAACCAAAGG +
Preference number: 5 (lower is better)
Translates to: GHGLEGPMPGSGSRR*LHADTSATNTPNQR
Trigger: CCTTTGGTTCGGGGTGTTGGTGGCCGAAGTATCAGCATGAAGGCATCTCCTGCTTCCCGATCCAGGCATGGGCCCTTCAAGACCATGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp GACGTTTCTCCCTGTGTCCAAATGACCACCTCAGGGGCATGGTCTTaGAGGGCCCATGCCTGGATCGGGAAGCAGGAGATGCCTTCATGC +
Preference number: 5 (lower is better)
Translates to: DVSPCVQMTTSGAWS*RAHAWIGKQEMPSC
Trigger: GCATGAAGGCATCTCCTGCTTCCCGATCCAGGCATGGGCCCTTCAAGACCATGCCCCTGAGGTGGTCATTTGGACACAGGGAGAAACGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp CGTCCAGGGAGTTCCGGCAATAGGCTTGCAGACTGCCATGGTGGTTaGAGACAGCATACAAGTCGTAGAGGAAGTCCAGCGGGTAGGTGG +
Preference number: 5 (lower is better)
Translates to: RPGSSGNRLADCHGG*RQHTSRRGSPAGRW
Trigger: CCACCTACCCGCTGGACTTCCTCTACGACTTGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGCCTATTGCCGGAACTCCCTGGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108677.2
CDS CCA 90 bp TTGGAGATAAGTAGCTGCAGGCCAAGGAGAGCCCCACAACCCGGATaGAGAACAGAGTCCCCAGGTCCTGTGCAGAGACCTCACTCCTCA +
Preference number: 5 (lower is better)
Translates to: LEISSCRPRRAPQPG*RTESPGPVQRPHSS
Trigger: TGAGGAGTGAGGTCTCTGCACAGGACCTGGGGACTCTGTTCTCCATCCGGGTTGTGGGGCTCTCCTTGGCCTGCAGCTACTTATCTCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp GGTGCTCCTCCGTGCTACATGGGGAGCCATGTTGAGTCCAGACAGTaGGAACTTCACCAGCGTGGAGAGCTTGTTCCTTCTCTCTCCCAC +
Preference number: 5 (lower is better)
Translates to: GAPPCYMGSHVESRQ*ELHQRGELVPSLSH
Trigger: GTGGGAGAGAGAAGGAACAAGCTCTCCACGCTGGTGAAGTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTGCTGGGCCCAGGAGATaGTTCTATCTTCCCGAATCA +
Preference number: 5 (lower is better)
Translates to: SSLPSLAATVTLPSLTATAGPRR*FYLPES
Trigger: TGATTCGGGAAGATAGAACAATCTCCTGGGCCCAGC...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp TTCCCGAATCAAGAACGGTGGTCCAAACCTGCTCGCCTGCTGCCCTaGGCCCACCAGGTTACAGAAGAGAAAGACCACCCTGTTCTCGCT +
Preference number: 5 (lower is better)
Translates to: FPNQERWSKPARLLP*AHQVTEEKDHPVLA
Trigger: AGCGAGAACAGGGTGGTCTTTCTCTTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGGACCACCGTTCTTGATTCGGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp CTGTGTCCAAATGACCACCTCAGGGGCATGGTCTTGAAGGGCCCATaGCTGGATCGGGAAGCAGGAGATGCCTTCATGCTGATACTTCGG +
Preference number: 5 (lower is better)
Translates to: LCPNDHLRGMVLKGP*LDREAGDAFMLILR
Trigger: CCGAAGTATCAGCATGAAGGCATCTCCTGCTTCCCGATCCAGGCATGGGCCCTTCAAGACCATGCCCCTGAGGTGGTCATTTGGACACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp GTCTCTTCCCCACCAGCAGCACGAGTCAAGAGCGGCACAATGGACTaGCTGGTAGAACGGGGTCTTCTTCTGGACTCTAGGTATTCCACC +
Preference number: 5 (lower is better)
Translates to: VSSPPAARVKSGTMD*LVERGLLLDSRYST
Trigger: GGTGGAATACCTAGAGTCCAGAAGAAGACCCCGTTCTACCAGCCAGTCCATTGTGCCGCTCTTGACTCGTGCTGCTGGTGGGGAAGAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGCACTCCCTAGGGAGATaGGGGGTGCTGGTGGTGAGC +
Preference number: 5 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLHSLGR*GVLVVS
Trigger: GCTCACCACCAGCACCCCCAATCTCCCTAGGGAGTG...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGTGGTTGCCCAGGCCCTaGGCTGGGCTCTCTCGAATC +
Preference number: 5 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLWLPRP*AGLSRI
Trigger: GATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACCA...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp GAGGATTGGCACGGCCAAGCCAACACGCAGAAACCGCTGGCTCTTTaGGGGGAACACCAAAGTGACACTCAAGAATCTCGTCTGGCGCAA +
Preference number: 5 (lower is better)
Translates to: EDWHGQANTQKPLAL*GEHQSDTQESRLAQ
Trigger: TTGCGCCAGACGAGATTCTTGAGTGTCACTTTGGTGTTCCCCTCAAAGAGCCAGCGGTTTCTGCGTGTTGGCTTGGCCGTGCCAATCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp CTTCCCCTTGTGCTGTTGTTGAGGCTCCCGAGTCTCATGAGCCAATaGTCAGACAAGGAGGAGCTGGTGGAACCTCTCATGGAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LPLVLLLRLPSLMSQ*SDKEELVEPLMELL
Trigger: CAGCAGCTCCATGAGAGGTTCCACCAGCTCCTCCTTGTCTGATCATTGGCTCATGAGACTCGGGAGCCTCAACAACAGCACAAGGGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp CTATCTTCCCGAATCAAGAACGGTGGTCCAAACCTGCTCGCCTGCTaGCCTGAGCCCACCAGGTTACAGAAGAGAAAGACCACCCTGTTC +
Preference number: 5 (lower is better)
Translates to: LSSRIKNGGPNLLAC*PEPTRLQKRKTTLF
Trigger: GAACAGGGTGGTCTTTCTCTTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGGACCACCGTTCTTGATTCGGGAAGATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp GTTCTATCTTCCCGAATCAAGAACGGTGGTCCAAACCTGCTCGCCTaGTGCCCTGAGCCCACCAGGTTACAGAAGAGAAAGACCACCCTG +
Preference number: 5 (lower is better)
Translates to: VLSSRIKNGGPNLLA*CPEPTRLQKRKTTL
Trigger: CAGGGTGGTCTTTCTCTTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGGACCACCGTTCTTGATTCGGGAAGATAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp CTTGACCACACCCTGCTGGAGGACTTGGCAGTGAGGGCACTTCCATaGATCATCCTGGGCCAGCTGTTCCTCCTTGGTATAGGACTGAAA +
Preference number: 5 (lower is better)
Translates to: LDHTLLEDLAVRALP*IILGQLFLLGIGLK
Trigger: TTTCAGTCCTATACCAAGGAGGAACAGCTGGCCCAGGATGATGCATGGAAGTGCCCTCACTGCCAAGTCCTCCAGCAGGGTGTGGTCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp GGCAATAGGCTGTGTAATGCCCACCTTGCAGACTGCCATGGTGGTTaGAGACAGCATACAAGTCGTAGAGGAAGTCCAGCGGGTAGGTGG +
Preference number: 5 (lower is better)
Translates to: GNRLCNAHLADCHGG*RQHTSRRGSPAGRW
Trigger: CCACCTACCCGCTGGACTTCCTCTACGACTTGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGGTGGGCATTACACAGCCTATTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021288.10
CDS CCA 90 bp GACGGATGGGCTGAGAGCGTCCCCAGACCAGGTGAAGGAGGGACTTaGAAAGCATACACATTGTCACCCTCTGCAATGGTATTCAGGTCC +
Preference number: 5 (lower is better)
Translates to: DGWAESVPRPGEGGT*KAYTLSPSAMVFRS
Trigger: GGACCTGAATACCATTGCAGAGGGTGACAATGTGTATGCTTTCCAAGTCCCTCCTTCACCTGGTCTGGGGACGCTCTCAGCCCATCCGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp ATTTCACTCTCTGCAGGGTGCCATAAGAAATCTGTTCCCCAGGAATaGTCCTTTGTGAGGTGCCAGCTGTACTGGCTCGAGGGGGCCTGC +
Preference number: 5 (lower is better)
Translates to: ISLSAGCHKKSVPQE*SFVRCQLYWLEGAC
Trigger: GCAGGCCCCCTCGAGCCAGTACAGCTGGCACCTCACAAAGGACCATTCCTGGGGAACAGATTTCTTATGGCACCCTGCAGAGAGTGAAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTAGACCTGTACTGTGCTaGAAAGTGGCTCTGCACAAA +
Preference number: 5 (lower is better)
Translates to: SSLPSLAATVTLPSLTATRPVLC*KVALHK
Trigger: TTTGTGCAGAGCCACTTTCAAGCACAGTACAGGTCT...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGACCCTGCTGGAGGACTaGGCAGTGAGGGCACTTCCA +
Preference number: 5 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLTLLED*AVRALP
Trigger: TGGAAGTGCCCTCACTGCCAAGTCCTCCAGCAGGGT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGGTCCACAGACTCAGCTaGACCACACCCTGCTGGAGG +
Preference number: 5 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLVHRLS*TTPCWR
Trigger: CCTCCAGCAGGGTGTGGTCAAGCTGAGTCTGTGGAC...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp GGGAACTTCACCAGCGTGGAGAGCTTGTTCCTTCTCTCTCCCACCTaGCAGAACCGTTTCAGATGGATGATCAGGATGTCGGGCAGAGTC +
Preference number: 5 (lower is better)
Translates to: GNFTSVESLFLLSPT*QNRFRWMIRMSGRV
Trigger: GACTCTGCCCGACATCCTGATCATCCATCTGAAACGGTTCTGTCAGGTGGGAGAGAGAAGGAACAAGCTCTCCACGCTGGTGAAGTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp CCAGGGAGTTCCGGCAATAGGCTGTGTAATGCCCACCTTGCAGACTaGCATGGTGGTTGCAGACAGCATACAAGTCGTAGAGGAAGTCCA +
Preference number: 5 (lower is better)
Translates to: PGSSGNRLCNAHLAD*HGGCRQHTSRRGSP
Trigger: TGGACTTCCTCTACGACTTGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGGTGGGCATTACACAGCCTATTGCCGGAACTCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021288.10
CDS CCA 90 bp ACTGTGCTGAGGATTGGCACGGCCAAGCCAACACGCAGAAACCGCTaGCTCTTTGAGGGGAACACCAAAGTGACACTCAAGAATCTCGTC +
Preference number: 5 (lower is better)
Translates to: TVLRIGTAKPTRRNR*LFEGNTKVTLKNLV
Trigger: GACGAGATTCTTGAGTGTCACTTTGGTGTTCCCCTCAAAGAGCCAGCGGTTTCTGCGTGTTGGCTTGGCCGTGCCAATCCTCAGCACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTAAAGGGTCGAAGGTGTaGCTTTGTTTTAGGCAGTGT +
Preference number: 5 (lower is better)
Translates to: SSLPSLAATVTLPSLTATKGSKV*LCFRQC
Trigger: ACACTGCCTAAAACAAAGCAACACCTTCGACCCTTT...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGTCCACAGACTCAGCTaGACCACACCCTGCTGGAGG +
Preference number: 5 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRVHRLS*TTPCWR
Trigger: CCTCCAGCAGGGTGTGGTCAAGCTGAGTCTGTGGAC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp TCGTGGACACGATCCAGAAGCCAGAGCAGGAATTCCAGGGCATCGTaGTGGGAATTGCCTTGGAACTGGGAGCCATACTTAGAAACAGCA +
Preference number: 5 (lower is better)
Translates to: SWTRSRSQSRNSRAS*WELPWNWEPYLETA
Trigger: TGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCTCTGGCTTCTGGATCGTGTCCACGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCTTCTCTCCCATCTCTCGCCGCCACTGTCACGCTCCCATCTCTCACCGCCACTTTAGAAACAGCATTCTaGAACTCTGCGGAAAGTTGG +
Preference number: 5 (lower is better)
Translates to: SSLPSLAATVTLPSLTATLETAF*NSAESW
Trigger: CCAACTTTCCGCAGAGTTCAAGAATGCTGTTTCTAA...AGTGGCGGTGAGAGATGGGAGCGTGACAGTGGCGGCGAGAGATGGGAGAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGCATCGTGCTGGGAATaGCCTTGGAACTGGGAGCCA +
Preference number: 5 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRASCWE*PWNWEP
Trigger: TGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGACATGGGGAGCCATGTaGAGTCCAGACAGTGGGAAC +
Preference number: 5 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLTWGAM*SPDSGN
Trigger: GTTCCCACTGTCTGGACTCAACATGGCTCCCCATGT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAATCCCTCTCCATGTGGTaGCCCAGGCCCTTGGCTGGG +
Preference number: 5 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQSLSMW*PRPLAG
Trigger: CCCAGCCAAGGGCCTGGGCAACCACATGGAGAGGGA...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp TGGACACGATCCAGAAGCCAGAGCAGGAATTCCAGGGCATCGTGCTaGGAATTGCCTTGGAACTGGGAGCCATACTTAGAAACAGCATTC +
Preference number: 5 (lower is better)
Translates to: WTRSRSQSRNSRASC*ELPWNWEPYLETAF
Trigger: GAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCTCTGGCTTCTGGATCGTGTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGACATGGGGAGCCATGTaGAGTCCAGACAGTGGGAAC +
Preference number: 5 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRTWGAM*SPDSGN
Trigger: GTTCCCACTGTCTGGACTCAACATGGCTCCCCATGT...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp AGAAGCCAGAGCAGGAATTCCAGGGCATCGTGCTGGGAATTGCCTTaGAACTGGGAGCCATACTTAGAAACAGCATTCTTGAACTCTGCG +
Preference number: 5 (lower is better)
Translates to: RSQSRNSRASCWELP*NWEPYLETAFLNSA
Trigger: CGCAGAGTTCAAGAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCTCTGGCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGTGCTGGGAATTGCCTaGGAACTGGGAGCCATACTT +
Preference number: 5 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRVLGIA*ELGAIL
Trigger: AAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCAC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGCTGAGAATACACTGTaGAAGCTGGGCCCAGGAGAT +
Preference number: 5 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRAENTL*KLGPGD
Trigger: ATCTCCTGGGCCCAGCTTCAACAGTGTATTCTCAGC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAACCCTGCTGGAGGACTaGGCAGTGAGGGCACTTCCA +
Preference number: 5 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQTLLED*AVRALP
Trigger: TGGAAGTGCCCTCACTGCCAAGTCCTCCAGCAGGGT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp CACTCCCTAGGGAGATTGGGGGTGCTGGTGGTGAGCTCTCAGTCCTaGCAGTCCTCTTGTGTTCTTTCTTCCAAAACACAGACTTCAAAA +
Preference number: 5 (lower is better)
Translates to: HSLGRLGVLVVSSQS*QSSCVLSSKTQTSK
Trigger: TTTTGAAGTCTGTGTTTTGGAAGAAAGAACACAAGAGGACTGTCAGGACTGAGAGCTCACCACCAGCACCCCCAATCTCCCTAGGGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp CAGAGCAGGAATTCCAGGGCATCGTGCTGGGAATTGCCTTGGAACTaGGAGCCATACTTAGAAACAGCATTCTTGAACTCTGCGGAAAGT +
Preference number: 5 (lower is better)
Translates to: QSRNSRASCWELPWN*EPYLETAFLNSAES
Trigger: ACTTTCCGCAGAGTTCAAGAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGTTCATGAAACAGGTGTaGCCATGGTTCTTCAAGCCC +
Preference number: 5 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLFMKQV*PWFFKP
Trigger: GGGCTTGAAGAACCATGGCAACACCTGTTTCATGAA...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGCATCGTGCTGGGAATaGCCTTGGAACTGGGAGCCA +
Preference number: 5 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQASCWE*PWNWEP
Trigger: TGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGACCGCTGGAATCCATaGGGATACAGTTCAACCAAG +
Preference number: 5 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRDRWNP*GYSSTK
Trigger: CTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp ACCTCACTCCTCATGAGGCATCGAACCTTGCTGAGAATACACTGTTaGAGCTGGGCCCAGGAGATTGTTCTATCTTCCCGAATCAAGAAC +
Preference number: 5 (lower is better)
Translates to: TSLLMRHRTLLRIHC*SWAQEIVLSSRIKN
Trigger: GTTCTTGATTCGGGAAGATAGAACAATCTCCTGGGCCCAGCTTCAACAGTGTATTCTCAGCAAGGTTCGATGCCTCATGAGGAGTGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 90 bp TCTTTCGACCTAAGGAAAGGGTGTGGTATTTCACTCTCTGCAGGGTaGCATAAGAAATCTGTTCCCCAGGAATGGTCCTTTGTGAGGTGC +
Preference number: 5 (lower is better)
Translates to: SFDLRKGCGISLSAG*HKKSVPQEWSFVRC
Trigger: GCACCTCACAAAGGACCATTCCTGGGGAACAGATTTCTTATGGCACCCTGCAGAGAGTGAAATACCACACCCTTTCCTTAGGTCGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp TGGTATTCAGGTCCTCTTCATCAAAGAATGACCGCTGGAATCCATTaGGATACAGTTCAACCAAGATCACCTCCTCTGCAGGGACACCTC +
Preference number: 5 (lower is better)
Translates to: WYSGPLHQRMTAGIH*DTVQPRSPPLQGHL
Trigger: GAGGTGTCCCTGCAGAGGAGGTGATCTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TTTAGCCTTGTCATGATAATTTGGGCTCAGCAGCACCGTCTAGTGGCCAGGCTGAAAGGGTCGAAGGTGTaGCTTTGTTTTAGGCAGTGT +
Preference number: 5 (lower is better)
Translates to: FSLVMIIWAQQHRLVARLKGSKV*LCFRQC
Trigger: ACACTGCCTAAAACAAAGCAACACCTTCGACCCTTT...CAGCCTGGCCACTAGACGGTGCTGCTGAGCCCAAATTATCATGACAAGGCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp CCCTCTGCAATGGTATTCAGGTCCTCTTCATCAAAGAATGACCGCTaGAATCCATTGGGATACAGTTCAACCAAGATCACCTCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: PSAMVFRSSSSKNDR*NPLGYSSTKITSSA
Trigger: TGCAGAGGAGGTGATCTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCATTGCAGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGCTGAGAATACACTGTaGAAGCTGGGCCCAGGAGAT +
Preference number: 5 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQAENTL*KLGPGD
Trigger: ATCTCCTGGGCCCAGCTTCAACAGTGTATTCTCAGC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAATGTGTAATGCCCACCTaGCAGACTGCCATGGTGGTT +
Preference number: 5 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQCVMPT*QTAMVV
Trigger: AACCACCATGGCAGTCTGCAAGGTGGGCATTACACA...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021288.10
CDS-3UTR CAA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGTCTCAACTCCTCCCTaGTCCTGGTGGCAGACACCA +
Preference number: 5 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLVSTPP*SWWQTP
Trigger: TGGTGTCTGCCACCAGGACAAGGGAGGAGTTGAGAC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAGCCTTAGACTTCATCTaGGGTAAGGTACCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQALDFI*GKVPGP
Trigger: TGGCCCAGGTACCTTACCCAAGATGAAGTCTAAGGC...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp AGAAAATCCACTCTGGACACAAGAGCCTACAGATTCTCAGTGTACAGCCCCAGGGTCCTGACAGTCCTCTaGTGTTCTTTCTTCCAAAAC +
Preference number: 5 (lower is better)
Translates to: RKSTLDTRAYRFSVYSPRVLTVL*CSFFQN
Trigger: GTTTTGGAAGAAAGAACACAAGAGGACTGTCAGGAC...CCTGGGGCTGTACACTGAGAATCTGTAGGCTCTTGTGTCCAGAGTGGATTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTCACTCCCTAGGGAGATaGGGGGTGCTGGTGGTGAGC +
Preference number: 5 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAHSLGR*GVLVVS
Trigger: GCTCACCACCAGCACCCCCAATCTCCCTAGGGAGTG...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 90 bp GTGAAGGAGGGACTTGGAAAGCATACACATTGTCACCCTCTGCAATaGTATTCAGGTCCTCTTCATCAAAGAATGACCGCTGGAATCCAT +
Preference number: 5 (lower is better)
Translates to: VKEGLGKHTHCHPLQ*YSGPLHQRMTAGIH
Trigger: ATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCATTGCAGAGGGTGACAATGTGTATGCTTTCCAAGTCCCTCCTTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 90 bp ATTGTCACCCTCTGCAATGGTATTCAGGTCCTCTTCATCAAAGAATaGCCGCTGGAATCCATTGGGATACAGTTCAACCAAGATCACCTC +
Preference number: 5 (lower is better)
Translates to: IVTLCNGIQVLFIKE*PLESIGIQFNQDHL
Trigger: GAGGTGATCTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCATTGCAGAGGGTGACAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGTGCTGGGAATTGCCTaGGAACTGGGAGCCATACTT +
Preference number: 5 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLVLGIA*ELGAIL
Trigger: AAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCAC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp GACATCAGAGTCTTTTTAGTAGACTATGGCAGGCCCTGGACTTACATACACCAAAGACCTGTACTGTGCTaGAAAGTGGCTCTGCACAAA +
Preference number: 5 (lower is better)
Translates to: DIRVFLVDYGRPWTYIHQRPVLC*KVALHK
Trigger: TTTGTGCAGAGCCACTTTCAAGCACAGTACAGGTCT...TTGGTGTATGTAAGTCCAGGGCCTGCCATAGTCTACTAAAAAGACTCTGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTACCAGCGTGGAGAGCTaGTTCCTTCTCTCTCCCACC +
Preference number: 5 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWATSVES*FLLSPT
Trigger: GGTGGGAGAGAGAAGGAACAAGCTCTCCACGCTGGT...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTGTCTCAACTCCTCCCTaGTCCTGGTGGCAGACACCA +
Preference number: 5 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAVSTPP*SWWQTP
Trigger: TGGTGTCTGCCACCAGGACAAGGGAGGAGTTGAGAC...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGCCTTAGACTTCATCTaGGGTAAGGTACCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLALDFI*GKVPGP
Trigger: TGGCCCAGGTACCTTACCCAAGATGAAGTCTAAGGC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGGACCGCTGGAATCCATaGGGATACAGTTCAACCAAG +
Preference number: 5 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLDRWNP*GYSSTK
Trigger: CTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTC...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTGTTCCGGCAATAGGCTaGCAGACTGCCATGGTGGTT +
Preference number: 5 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAVPAIG*QTAMVV
Trigger: AACCACCATGGCAGTCTGCAAGCCTATTGCCGGAAC...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTGCTGGGCCCAGGAGATaGTTCTATCTTCCCGAATCA +
Preference number: 5 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAAGPRR*FYLPES
Trigger: TGATTCGGGAAGATAGAACAATCTCCTGGGCCCAGC...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTTTCATGAAACAGGTGTaGCCATGGTTCTTCAAGCCC +
Preference number: 5 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAFMKQV*PWFFKP
Trigger: GGGCTTGAAGAACCATGGCAACACCTGTTTCATGAA...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp TCAAGTTTCAGAAACAACACAGGCAACTGCATTCTGATAGATAGCAACAAGCTGTTAGAAACAGCATTCTaGAACTCTGCGGAAAGTTGG +
Preference number: 5 (lower is better)
Translates to: SSFRNNTGNCILIDSNKLLETAF*NSAESW
Trigger: CCAACTTTCCGCAGAGTTCAAGAATGCTGTTTCTAA...CAGCTTGTTGCTATCTATCAGAATGCAGTTGCCTGTGTTGTTTCTGAAACTTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS-3UTR CAA 90 bp CTGGACTTACATACACCAAACACTAATTTTAGCCTTGTCATGATAATTTGGGCTGTCCTGACAGTCCTCTaGTGTTCTTTCTTCCAAAAC +
Preference number: 5 (lower is better)
Translates to: LDLHTPNTNFSLVMIIWAVLTVL*CSFFQN
Trigger: GTTTTGGAAGAAAGAACACAAGAGGACTGTCAGGAC...AGCCCAAATTATCATGACAAGGCTAAAATTAGTGTTTGGTGTATGTAAGTCCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp GGCTGCTTCCAGGAGGACCAAGGGCCGGGCCCCGCCTaGGAGTTGGTGCTCCTCCGTGCTACATGGGGAGCC +
Preference number: 6 (lower is better)
Translates to: GCFQEDQGPGPA*ELVLLRATWGA
Trigger: GGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGGGGCCCGGCCCTTGGTCCTCCTGGAAGCAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp CGAAGATATCTGGGGTTGGGATCCCGGAGGACGATCTaGCCCTGGACTCCCGGCAGAGGCTGGTGCCGGGCC +
Preference number: 6 (lower is better)
Translates to: RRYLGLGSRRTI*PWTPGRGWCRA
Trigger: GGCCCGGCACCAGCCTCTGCCGGGAGTCCAGGGCCAGATCGTCCTCCGGGATCCCAACCCCAGATATCTTCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp TCCAGGGTACAGCTGGGCTGCTGGTGTGCCTGCTGCTaGCGCCACACACTGTCTGCATCCTGGACCCGTTCC +
Preference number: 6 (lower is better)
Translates to: SRVQLGCWCACC*RHTLSASWTRS
Trigger: GGAACGGGTCCAGGATGCAGACAGTGTGTGGCGGCAGCAGCAGGCACACCAGCAGCCCAGCTGTACCCTGGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp TCGTCCAGGGTACAGCTGGGCTGCTGGTGTGCCTGCTaGTGCCGCCACACACTGTCTGCATCCTGGACCCGT +
Preference number: 6 (lower is better)
Translates to: SSRVQLGCWCAC*CRHTLSASWTR
Trigger: ACGGGTCCAGGATGCAGACAGTGTGTGGCGGCAGCAGCAGGCACACCAGCAGCCCAGCTGTACCCTGGACGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp ATCGGCTGCTTCCAGGAGGACCAAGGGCCGGGCCCCGCCTTGGAGTaGGTGCTCCTCCGTGCTACATGGGGAGCCATGTTGAGTCCAGAC +
Preference number: 6 (lower is better)
Translates to: IGCFQEDQGPGPALE*VLLRATWGAMLSPD
Trigger: GTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGGGGCCCGGCCCTTGGTCCTCCTGGAAGCAGCCGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp AGGCAGATCGGCTGCTTCCAGGAGGACCAAGGGCCGGGCCCCGCCTaGGAGTTGGTGCTCCTCCGTGCTACATGGGGAGCCATGTTGAGT +
Preference number: 6 (lower is better)
Translates to: RQIGCFQEDQGPGPA*ELVLLRATWGAMLS
Trigger: ACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGGGGCCCGGCCCTTGGTCCTCCTGGAAGCAGCCGATCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp CATTCGTCCAGGGTACAGCTGGGCTGCTGGTGTGCCTaGTGCTGCCGCCACACACTGTCTGCATCCTGGACC +
Preference number: 6 (lower is better)
Translates to: HSSRVQLGCWCA*CCRHTLSASWT
Trigger: GGTCCAGGATGCAGACAGTGTGTGGCGGCAGCAGCAGGCACACCAGCAGCCCAGCTGTACCCTGGACGAATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp GCCTCCTGGCCTCCTGAGGTGCAAAGCCCTGTCAACTaGCCAGTGGCAAAGGGGCCGGTTGTCCTTTGGAGA +
Preference number: 6 (lower is better)
Translates to: ASWPPEVQSPVN*PVAKGPVVLWR
Trigger: TCTCCAAAGGACAACCGGCCCCTTTGCCACTGGGCAGTTGACAGGGCTTTGCACCTCAGGAGGCCAGGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp CTGGGCGCAGATCTGATGTCCCTCTCCATGTGGTTGCCCAGGCCCTaGGCTGGGCTCTCTCGAATCCTGAGGGCCTGCTCATTCATGGCA +
Preference number: 6 (lower is better)
Translates to: LGADLMSLSMWLPRP*AGLSRILRACSFMA
Trigger: TGCCATGAATGAGCAGGCCCTCAGGATTCGAGAGAGCCCAGCCAAGGGCCTGGGCAACCACATGGAGAGGGACATCAGATCTGCGCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp TTCATGAAACAGGTGTTGCCATGGTTCTTCAAGCCCTaGGCGCCGGGCGGACGCGCCCCGTCACCCGAAGAT +
Preference number: 6 (lower is better)
Translates to: FMKQVLPWFFKP*APGGRAPSPED
Trigger: ATCTTCGGGTGACGGGGCGCGTCCGCCCGGCGCTCAGGGCTTGAAGAACCATGGCAACACCTGTTTCATGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CTCACTTCTGGGGGCAGCTGCTCAGATACCAGCCCGTaGGCTGAGCCTTCCAAGTCCTCGTGGACACGATCC +
Preference number: 6 (lower is better)
Translates to: LTSGGSCSDTSP*AEPSKSSWTRS
Trigger: GGATCGTGTCCACGAGGACTTGGAAGGCTCAGCTCACGGGCTGGTATCTGAGCAGCTGCCCCCAGAAGTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CAACTCCTCCCTTGTCCTGGTGGCAGACACCATTGGTaGAGACAGGAGAGTCGGGTACCCGGGCCATGGAGG +
Preference number: 6 (lower is better)
Translates to: QLLPCPGGRHHW*RQESRVPGPWR
Trigger: CCTCCATGGCCCGGGTACCCGACTCTCCTGTCTTCACCAATGGTGTCTGCCACCAGGACAAGGGAGGAGTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp GGCCCCGCCTTGGAGTTGGTGCTCCTCCGTGCTACATaGGGAGCCATGTTGAGTCCAGACAGTGGGAACTTC +
Preference number: 6 (lower is better)
Translates to: GPALELVLLRAT*GAMLSPDSGNF
Trigger: GAAGTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACTCCAAGGCGGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp CAGCATACAAGTCGTAGAGGAAGTCCAGCGGGTAGGTaGTGGGGAGGCAGATCGGCTGCTTCCAGGAGGACC +
Preference number: 6 (lower is better)
Translates to: QHTSRRGSPAGR*WGGRSAASRRT
Trigger: GGTCCTCCTGGAAGCAGCCGATCTGCCTCCCCACCACCTACCCGCTGGACTTCCTCTACGACTTGTATGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp GTGGAGGGGGAAGGTGGGCTACTCTGGCTTCCCACCTaGCTACTTCCCTTCCAAGGTGTCATCTTCTGGCCC +
Preference number: 6 (lower is better)
Translates to: VEGEGGLLWLPT*LLPFQGVIFWP
Trigger: GGGCCAGAAGATGACACCTTGGAAGGGAAGTAGCCAGGTGGGAAGCCAGAGTAGCCCACCTTCCCCCTCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp GCAAAGCCCTGTCAACTGCCCAGTGGCAAAGGGGCCGGTTGTCCTTaGGAGATAAGTAGCTGCAGGCCAAGGAGAGCCCCACAACCCGGA +
Preference number: 6 (lower is better)
Translates to: AKPCQLPSGKGAGCP*EISSCRPRRAPQPG
Trigger: TCCGGGTTGTGGGGCTCTCCTTGGCCTGCAGCTACTTATCTCCAAAGGACAACCGGCCCCTTTGCCACTGGGCAGTTGACAGGGCTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp GGGCAGAGTCCACAGACTCAGCTTGACCACACCCTGCTGGAGGACTaGGCAGTGAGGGCACTTCCATGCATCATCCTGGGCCAGCTGTTC +
Preference number: 6 (lower is better)
Translates to: GQSPQTQLDHTLLED*AVRALPCIILGQLF
Trigger: GAACAGCTGGCCCAGGATGATGCATGGAAGTGCCCTCACTGCCAAGTCCTCCAGCAGGGTGTGGTCAAGCTGAGTCTGTGGACTCTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp TTCTGGGGGCAGCTGCTCAGATACCAGCCCGTGAGCTaGGCCTTCCAAGTCCTCGTGGACACGATCCAGAAG +
Preference number: 6 (lower is better)
Translates to: FWGQLLRYQPVS*AFQVLVDTIQK
Trigger: CTTCTGGATCGTGTCCACGAGGACTTGGAAGGCTCAGCTCACGGGCTGGTATCTGAGCAGCTGCCCCCAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CCTCTGCAACCATCTTCCTCAAGGCCGCCACTGTGCTaGGGATTGGCACGGCCAAGCCAACACGCAGAAACC +
Preference number: 6 (lower is better)
Translates to: PLQPSSSRPPLC*GLARPSQHAET
Trigger: GGTTTCTGCGTGTTGGCTTGGCCGTGCCAATCCTCAGCACAGTGGCGGCCTTGAGGAAGATGGTTGCAGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CCCTGTGTCCAAATGACCACCTCAGGGGCATGGTCTTaGAGGGCCCATGCCTGGATCGGGAAGCAGGAGATG +
Preference number: 6 (lower is better)
Translates to: PCVQMTTSGAWS*RAHAWIGKQEM
Trigger: CATCTCCTGCTTCCCGATCCAGGCATGGGCCCTTCAAGACCATGCCCCTGAGGTGGTCATTTGGACACAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp AACGGATGCCCCGGGACGTTTCTCCCTGTGTCCAAATaGCCACCTCAGGGGCATGGTCTTGAAGGGCCCATG +
Preference number: 6 (lower is better)
Translates to: NGCPGTFLPVSK*PPQGHGLEGPM
Trigger: CATGGGCCCTTCAAGACCATGCCCCTGAGGTGGTCATTTGGACACAGGGAGAAACGTCCCGGGGCATCCGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp GGCAAAGGGGCCGGTTGTCCTTTGGAGATAAGTAGCTaGAGGCCAAGGAGAGCCCCACAACCCGGATGGAGA +
Preference number: 6 (lower is better)
Translates to: GKGAGCPLEISS*RPRRAPQPGWR
Trigger: TCTCCATCCGGGTTGTGGGGCTCTCCTTGGCCTGCAGCTACTTATCTCCAAAGGACAACCGGCCCCTTTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp AACCATCTTCCTCAAGGCCGCCACTGTGCTGAGGATTaGCACGGCCAAGCCAACACGCAGAAACCGCTGGCT +
Preference number: 6 (lower is better)
Translates to: NHLPQGRHCAED*HGQANTQKPLA
Trigger: AGCCAGCGGTTTCTGCGTGTTGGCTTGGCCGTGCCAATCCTCAGCACAGTGGCGGCCTTGAGGAAGATGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp CATACAAGTCGTAGAGGAAGTCCAGCGGGTAGGTGGTaGGGAGGCAGATCGGCTGCTTCCAGGAGGACCAAG +
Preference number: 6 (lower is better)
Translates to: HTSRRGSPAGRW*GGRSAASRRTK
Trigger: CTTGGTCCTCCTGGAAGCAGCCGATCTGCCTCCCCACCACCTACCCGCTGGACTTCCTCTACGACTTGTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp CCCACCTGGCTACTTCCCTTCCAAGGTGTCATCTTCTaGCCCTCAGGGCGAGCTGGCTTTTCATCCCCCACT +
Preference number: 6 (lower is better)
Translates to: PTWLLPFQGVIF*PSGRAGFSSPT
Trigger: AGTGGGGGATGAAAAGCCAGCTCGCCCTGAGGGCCAGAAGATGACACCTTGGAAGGGAAGTAGCCAGGTGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp CTAAGCAAGCCAGTGGAGGGGGAAGGTGGGCTACTCTaGCTTCCCACCTGGCTACTTCCCTTCCAAGGTGTC +
Preference number: 6 (lower is better)
Translates to: LSKPVEGEGGLL*LPTWLLPFQGV
Trigger: GACACCTTGGAAGGGAAGTAGCCAGGTGGGAAGCCAGAGTAGCCCACCTTCCCCCTCCACTGGCTTGCTTAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp CCACAGACTCAGCTTGACCACACCCTGCTGGAGGACTaGGCAGTGAGGGCACTTCCATGCATCATCCTGGGC +
Preference number: 6 (lower is better)
Translates to: PQTQLDHTLLED*AVRALPCIILG
Trigger: GCCCAGGATGATGCATGGAAGTGCCCTCACTGCCAAGTCCTCCAGCAGGGTGTGGTCAAGCTGAGTCTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp GTCTCAACTCCTCCCTTGTCCTGGTGGCAGACACCATaGGTGAAGACAGGAGAGTCGGGTACCCGGGCCATG +
Preference number: 6 (lower is better)
Translates to: VSTPPLSWWQTP*VKTGESGTRAM
Trigger: CATGGCCCGGGTACCCGACTCTCCTGTCTTCACCAATGGTGTCTGCCACCAGGACAAGGGAGGAGTTGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CAAGAACGGTGGTCCAAACCTGCTCGCCTGCTGCCCTaGGCCCACCAGGTTACAGAAGAGAAAGACCACCCT +
Preference number: 6 (lower is better)
Translates to: QERWSKPARLLP*AHQVTEEKDHP
Trigger: AGGGTGGTCTTTCTCTTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGGACCACCGTTCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp AATGACCACCTCAGGGGCATGGTCTTGAAGGGCCCATaGCTGGATCGGGAAGCAGGAGATGCCTTCATGCTG +
Preference number: 6 (lower is better)
Translates to: NDHLRGMVLKGP*LDREAGDAFML
Trigger: CAGCATGAAGGCATCTCCTGCTTCCCGATCCAGGCATGGGCCCTTCAAGACCATGCCCCTGAGGTGGTCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp CCACCAGCAGCACGAGTCAAGAGCGGCACAATGGACTaGCTGGTAGAACGGGGTCTTCTTCTGGACTCTAGG +
Preference number: 6 (lower is better)
Translates to: PPAARVKSGTMD*LVERGLLLDSR
Trigger: CCTAGAGTCCAGAAGAAGACCCCGTTCTACCAGCCAGTCCATTGTGCCGCTCTTGACTCGTGCTGCTGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp TGTCAACTGCCCAGTGGCAAAGGGGCCGGTTGTCCTTaGGAGATAAGTAGCTGCAGGCCAAGGAGAGCCCCA +
Preference number: 6 (lower is better)
Translates to: CQLPSGKGAGCP*EISSCRPRRAP
Trigger: TGGGGCTCTCCTTGGCCTGCAGCTACTTATCTCCAAAGGACAACCGGCCCCTTTGCCACTGGGCAGTTGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp AGTTGGTGCTCCTCCGTGCTACATGGGGAGCCATGTTaGGTCCAGACAGTGGGAACTTCACCAGCGTGGAGA +
Preference number: 6 (lower is better)
Translates to: SWCSSVLHGEPC*VQTVGTSPAWR
Trigger: TCTCCACGCTGGTGAAGTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGGAGGAGCACCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CATGCCTGGATCGGGAAGCAGGAGATGCCTTCATGCTaGTACTTCGGCCACCAACACCCCGAACCAAAGGTC +
Preference number: 6 (lower is better)
Translates to: HAWIGKQEMPSC*YFGHQHPEPKV
Trigger: GACCTTTGGTTCGGGGTGTTGGTGGCCGAAGTATCAGCATGAAGGCATCTCCTGCTTCCCGATCCAGGCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp GCCATAAGAAATCTGTTCCCCAGGAATGGTCCTTTGTaGGGTGCCAGCTGTACTGGCTCGAGGGGGCCTGCT +
Preference number: 6 (lower is better)
Translates to: AIRNLFPRNGPL*GASCTGSRGPA
Trigger: AGCAGGCCCCCTCGAGCCAGTACAGCTGGCACCTCACAAAGGACCATTCCTGGGGAACAGATTTCTTATGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp CGAATCAAGAACGGTGGTCCAAACCTGCTCGCCTGCTaGCCTGAGCCCACCAGGTTACAGAAGAGAAAGACC +
Preference number: 6 (lower is better)
Translates to: RIKNGGPNLLAC*PEPTRLQKRKT
Trigger: GGTCTTTCTCTTCTGTAACCTGGTGGGCTCAGGGCAGCAGGCGAGCAGGTTTGGACCACCGTTCTTGATTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp TACTTAGAAACAGCATTCTTGAACTCTGCGGAAAGTTaGGGCGTGTATTCGCGCGTCCAGAGCGCGCGCACC +
Preference number: 6 (lower is better)
Translates to: YLETAFLNSAES*GVYSRVQSART
Trigger: GGTGCGCGCGCTCTGGACGCGCGAATACACGCCCCAACTTTCCGCAGAGTTCAAGAATGCTGTTTCTAAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp AGGATTGGCACGGCCAAGCCAACACGCAGAAACCGCTaGCTCTTTGAGGGGAACACCAAAGTGACACTCAAG +
Preference number: 6 (lower is better)
Translates to: RIGTAKPTRRNR*LFEGNTKVTLK
Trigger: CTTGAGTGTCACTTTGGTGTTCCCCTCAAAGAGCCAGCGGTTTCTGCGTGTTGGCTTGGCCGTGCCAATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp CCGTGCTACATGGGGAGCCATGTTGAGTCCAGACAGTaGGAACTTCACCAGCGTGGAGAGCTTGTTCCTTCT +
Preference number: 6 (lower is better)
Translates to: PCYMGSHVESRQ*ELHQRGELVPS
Trigger: AGAAGGAACAAGCTCTCCACGCTGGTGAAGTTCCCACTGTCTGGACTCAACATGGCTCCCCATGTAGCACGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp ACACCCCGAACCAAAGGTCTGGTCTCAACTCCTCCCTaGTCCTGGTGGCAGACACCATTGGTGAAGACAGGA +
Preference number: 6 (lower is better)
Translates to: TPRTKGLVSTPP*SWWQTPLVKTG
Trigger: TCCTGTCTTCACCAATGGTGTCTGCCACCAGGACAAGGGAGGAGTTGAGACCAGACCTTTGGTTCGGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CACGGCCAAGCCAACACGCAGAAACCGCTGGCTCTTTaGGGGGAACACCAAAGTGACACTCAAGAATCTCGT +
Preference number: 6 (lower is better)
Translates to: HGQANTQKPLAL*GEHQSDTQESR
Trigger: ACGAGATTCTTGAGTGTCACTTTGGTGTTCCCCTCAAAGAGCCAGCGGTTTCTGCGTGTTGGCTTGGCCGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp CTGTGTAATGCCCACCTTGCAGACTGCCATGGTGGTTaGAGACAGCATACAAGTCGTAGAGGAAGTCCAGCG +
Preference number: 6 (lower is better)
Translates to: LCNAHLADCHGG*RQHTSRRGSPA
Trigger: CGCTGGACTTCCTCTACGACTTGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGGTGGGCATTACACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021288.10
CDS GCA 72 bp AGTTCCGGCAATAGGCTTGCAGACTGCCATGGTGGTTaGAGACAGCATACAAGTCGTAGAGGAAGTCCAGCG +
Preference number: 6 (lower is better)
Translates to: SSGNRLADCHGG*RQHTSRRGSPA
Trigger: CGCTGGACTTCCTCTACGACTTGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGCCTATTGCCGGAACT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108677.2
CDS CCA 72 bp GCTGAGAGCGTCCCCAGACCAGGTGAAGGAGGGACTTaGAAAGCATACACATTGTCACCCTCTGCAATGGTA +
Preference number: 6 (lower is better)
Translates to: AESVPRPGEGGT*KAYTLSPSAMV
Trigger: TACCATTGCAGAGGGTGACAATGTGTATGCTTTCCAAGTCCCTCCTTCACCTGGTCTGGGGACGCTCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp TCTGCAGGGTGCCATAAGAAATCTGTTCCCCAGGAATaGTCCTTTGTGAGGTGCCAGCTGTACTGGCTCGAG +
Preference number: 6 (lower is better)
Translates to: SAGCHKKSVPQE*SFVRCQLYWLE
Trigger: CTCGAGCCAGTACAGCTGGCACCTCACAAAGGACCATTCCTGGGGAACAGATTTCTTATGGCACCCTGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp ATACTTAGAAACAGCATTCTTGAACTCTGCGGAAAGTaGGGGCGTGTATTCGCGCGTCCAGAGCGCGCGCAC +
Preference number: 6 (lower is better)
Translates to: ILRNSILELCGK*GRVFARPERAH
Trigger: GTGCGCGCGCTCTGGACGCGCGAATACACGCCCCAACTTTCCGCAGAGTTCAAGAATGCTGTTTCTAAGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp CAGGGAGTTCCGGCAATAGGCTGTGTAATGCCCACCTaGCAGACTGCCATGGTGGTTGCAGACAGCATACAA +
Preference number: 6 (lower is better)
Translates to: QGVPAIGCVMPT*QTAMVVADSIQ
Trigger: TTGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGGTGGGCATTACACAGCCTATTGCCGGAACTCCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021288.10
CDS TCA 72 bp TTCTCTCTCCCACCTGACAGAACCGTTTCAGATGGATaGTCAGGATGTCGGGCAGAGTCCACAGACTCAGCT +
Preference number: 6 (lower is better)
Translates to: FSLPPDRTVSDG*SGCRAESTDSA
Trigger: AGCTGAGTCTGTGGACTCTGCCCGACATCCTGATCATCCATCTGAAACGGTTCTGTCAGGTGGGAGAGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp ACCAGCGTGGAGAGCTTGTTCCTTCTCTCTCCCACCTaGCAGAACCGTTTCAGATGGATGATCAGGATGTCG +
Preference number: 6 (lower is better)
Translates to: TSVESLFLLSPT*QNRFRWMIRMS
Trigger: CGACATCCTGATCATCCATCTGAAACGGTTCTGTCAGGTGGGAGAGAGAAGGAACAAGCTCTCCACGCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp GGGAGATTGGGGGTGCTGGTGGTGAGCTCTCAGTCCTaGCAGTCCTCTTGTGTTCTTTCTTCCAAAACACAG +
Preference number: 6 (lower is better)
Translates to: GRLGVLVVSSQS*QSSCVLSSKTQ
Trigger: CTGTGTTTTGGAAGAAAGAACACAAGAGGACTGTCAGGACTGAGAGCTCACCACCAGCACCCCCAATCTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp CTGGGAGCCATACTTAGAAACAGCATTCTTGAACTCTaGGGAAAGTTGGGGCGTGTATTCGCGCGTCCAGAG +
Preference number: 6 (lower is better)
Translates to: LGAILRNSILEL*GKLGRVFARPE
Trigger: CTCTGGACGCGCGAATACACGCCCCAACTTTCCGCAGAGTTCAAGAATGCTGTTTCTAAGTATGGCTCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp TCCGGCAATAGGCTGTGTAATGCCCACCTTGCAGACTaGCATGGTGGTTGCAGACAGCATACAAGTCGTAGA +
Preference number: 6 (lower is better)
Translates to: SGNRLCNAHLAD*HGGCRQHTSRR
Trigger: TCTACGACTTGTATGCTGTCTGCAACCACCATGGCAGTCTGCAAGGTGGGCATTACACAGCCTATTGCCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021288.10
CDS CCA 72 bp TCCAGAAGCCAGAGCAGGAATTCCAGGGCATCGTGCTaGGAATTGCCTTGGAACTGGGAGCCATACTTAGAA +
Preference number: 6 (lower is better)
Translates to: SRSQSRNSRASC*ELPWNWEPYLE
Trigger: TTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCTCTGGCTTCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp GGGGCCCTTTCCTCCATGGCAGCCTTAGACTTCATCTaGGGTAAGGTACCTGGGCCACTGTCCTTAAAGTTT +
Preference number: 6 (lower is better)
Translates to: GALSSMAALDFI*GKVPGPLSLKF
Trigger: AAACTTTAAGGACAGTGGCCCAGGTACCTTACCCAAGATGAAGTCTAAGGCTGCCATGGAGGAAAGGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp CAGAAGCCAGAGCAGGAATTCCAGGGCATCGTGCTGGGAATTGCCTaGGAACTGGGAGCCATACTTAGAAACAGCATTCTTGAACTCTGC +
Preference number: 6 (lower is better)
Translates to: QKPEQEFQGIVLGIA*ELGAILRNSILELC
Trigger: GCAGAGTTCAAGAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCTCTGGCTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp CGATCCAGAAGCCAGAGCAGGAATTCCAGGGCATCGTGCTGGGAATaGCCTTGGAACTGGGAGCCATACTTAGAAACAGCATTCTTGAAC +
Preference number: 6 (lower is better)
Translates to: RSRSQSRNSRASCWE*PWNWEPYLETAFLN
Trigger: GTTCAAGAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCTCTGGCTTCTGGATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CTCATGAGGCATCGAACCTTGCTGAGAATACACTGTTaGAGCTGGGCCCAGGAGATTGTTCTATCTTCCCGA +
Preference number: 6 (lower is better)
Translates to: LMRHRTLLRIHC*SWAQEIVLSSR
Trigger: TCGGGAAGATAGAACAATCTCCTGGGCCCAGCTTCAACAGTGTATTCTCAGCAAGGTTCGATGCCTCATGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp AGCAGGAATTCCAGGGCATCGTGCTGGGAATTGCCTTaGAACTGGGAGCCATACTTAGAAACAGCATTCTTG +
Preference number: 6 (lower is better)
Translates to: SRNSRASCWELP*NWEPYLETAFL
Trigger: CAAGAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp GAGCAGGAATTCCAGGGCATCGTGCTGGGAATTGCCTaGGAACTGGGAGCCATACTTAGAAACAGCATTCTT +
Preference number: 6 (lower is better)
Translates to: EQEFQGIVLGIA*ELGAILRNSIL
Trigger: AAGAATGCTGTTTCTAAGTATGGCTCCCAGTTCCAAGGCAATTCCCAGCACGATGCCCTGGAATTCCTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp AGCGTCCCCAGACCAGGTGAAGGAGGGACTTGGAAAGCATACACATaGTCACCCTCTGCAATGGTATTCAGGTCCTCTTCATCAAAGAAT +
Preference number: 6 (lower is better)
Translates to: SVPRPGEGGTWKAYT*SPSAMVFRSSSSKN
Trigger: ATTCTTTGATGAAGAGGACCTGAATACCATTGCAGAGGGTGACAATGTGTATGCTTTCCAAGTCCCTCCTTCACCTGGTCTGGGGACGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp GGTCCTCTTCATCAAAGAATGACCGCTGGAATCCATTaGGATACAGTTCAACCAAGATCACCTCCTCTGCAG +
Preference number: 6 (lower is better)
Translates to: GPLHQRMTAGIH*DTVQPRSPPLQ
Trigger: CTGCAGAGGAGGTGATCTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp AGACCAGGTGAAGGAGGGACTTGGAAAGCATACACATaGTCACCCTCTGCAATGGTATTCAGGTCCTCTTCA +
Preference number: 6 (lower is better)
Translates to: RPGEGGTWKAYT*SPSAMVFRSSS
Trigger: TGAAGAGGACCTGAATACCATTGCAGAGGGTGACAATGTGTATGCTTTCCAAGTCCCTCCTTCACCTGGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 90 bp ATGGTATTCAGGTCCTCTTCATCAAAGAATGACCGCTGGAATCCATaGGGATACAGTTCAACCAAGATCACCTCCTCTGCAGGGACACCT +
Preference number: 6 (lower is better)
Translates to: MVFRSSSSKNDRWNP*GYSSTKITSSAGTP
Trigger: AGGTGTCCCTGCAGAGGAGGTGATCTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS GCA 72 bp CTAAGGAAAGGGTGTGGTATTTCACTCTCTGCAGGGTaGCATAAGAAATCTGTTCCCCAGGAATGGTCCTTT +
Preference number: 6 (lower is better)
Translates to: LRKGCGISLSAG*HKKSVPQEWSF
Trigger: AAAGGACCATTCCTGGGGAACAGATTTCTTATGGCACCCTGCAGAGAGTGAAATACCACACCCTTTCCTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CAA 72 bp AGGTCCTCTTCATCAAAGAATGACCGCTGGAATCCATaGGGATACAGTTCAACCAAGATCACCTCCTCTGCA +
Preference number: 6 (lower is better)
Translates to: RSSSSKNDRWNP*GYSSTKITSSA
Trigger: TGCAGAGGAGGTGATCTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp GGACTTGGAAAGCATACACATTGTCACCCTCTGCAATaGTATTCAGGTCCTCTTCATCAAAGAATGACCGCT +
Preference number: 6 (lower is better)
Translates to: GLGKHTHCHPLQ*YSGPLHQRMTA
Trigger: AGCGGTCATTCTTTGATGAAGAGGACCTGAATACCATTGCAGAGGGTGACAATGTGTATGCTTTCCAAGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS TCA 72 bp CTCTGCAATGGTATTCAGGTCCTCTTCATCAAAGAATaGCCGCTGGAATCCATTGGGATACAGTTCAACCAA +
Preference number: 6 (lower is better)
Translates to: LCNGIQVLFIKE*PLESIGIQFNQ
Trigger: TTGGTTGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCATTGCAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2
CDS CCA 72 bp ATGGTATTCAGGTCCTCTTCATCAAAGAATGACCGCTaGAATCCATTGGGATACAGTTCAACCAAGATCACC +
Preference number: 6 (lower is better)
Translates to: MVFRSSSSKNDR*NPLGYSSTKIT
Trigger: GGTGATCTTGGTTGAACTGTATCCCAATGGATTCCAGCGGTCATTCTTTGATGAAGAGGACCTGAATACCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021288.10
ENSMUST00000108677.2