RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032612

Ensembl transcript IDs: ENSMUST00000035237.12, ENSMUST00000193288.6, ENSMUST00000194224.6, ENSMUST00000194959.6, ENSMUST00000195608.2

Found 440 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGGACAGTACCAGGGGTCATGCTCCCCAAGGGTCTCCATGGTGGTaGAGAGCTCGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCT +
Preference number: 1 (lower is better)
Translates to: WDSTRGHAPQGSPWW*RARCTLAGLLPPSS
Trigger: AGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCGAGCTCTTCACCACCATGGAGACCCTTGGGGAGCATGACCCCTGGTACTGTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR TCA 90 bp TCCTGCCCGAGCAAGGAATTACAAGCATGCGACACCACACCCAGCTaGACATCAGCTCCCGCGGGTAGGCTAACCTGGTTGCCTCGCCCT +
Preference number: 1 (lower is better)
Translates to: SCPSKELQACDTTPS*TSAPAGRLTWLPRP
Trigger: AGGGCGAGGCAACCAGGTTAGCCTACCCGCGGGAGCTGATGTTCAGCTGGGTGTGGTGTCGCATGCTTGTAATTCCTTGCTCGGGCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR GCA 90 bp GGCCACATCAGTTGGTGTCCATGTTGTAAGCCTCCTCATCCCCCATaGCCTGGTGTGAGCTGCTCAGCTTCACCCCTCCATCAGAACCGG +
Preference number: 1 (lower is better)
Translates to: GHISWCPCCKPPHPP*PGVSCSASPLHQNR
Trigger: CCGGTTCTGATGGAGGGGTGAAGCTGAGCAGCTCACACCAGGGCATGGGGGATGAGGAGGCTTACAACATGGACACCAACTGATGTGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
3UTR GCA 90 bp CCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATaGTCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGA +
Preference number: 1 (lower is better)
Translates to: PSSEQPCRWVFMAAP*SLQGLPLHSLESMR
Trigger: TCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR GCA 90 bp TCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTaGACCATGCTCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATC +
Preference number: 1 (lower is better)
Translates to: SKTQFGAALQVGLHG*TMLIAGSSSPLFGI
Trigger: GATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR CCA 90 bp TGCCTCGCCCTGTTAATAAGAAACAGAACTGAGCCTGTGCTGTCCTaGCTGAAGCCAAGTTCCCTGACAGCAATGACGGCCAGGACAGGC +
Preference number: 1 (lower is better)
Translates to: CLALLIRNRTEPVLS*LKPSSLTAMTARTG
Trigger: GCCTGTCCTGGCCGTCATTGCTGTCAGGGAACTTGGCTTCAGCCAGGACAGCACAGGCTCAGTTCTGTTTCTTATTAACAGGGCGAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 90 bp TCTGCTTCTACCCTGAGTCTGGGAACAAATCCAGGTCAGCAGGCTTaGGGGTCAAGGATTCTCAATGAGCTGCCTAGTCTCACCAGCCCA +
Preference number: 1 (lower is better)
Translates to: SASTLSLGTNPGQQA*GSRILNELPSLTSP
Trigger: TGGGCTGGTGAGACTAGGCAGCTCATTGAGAATCCTTGACCCCCAAGCCTGCTGACCTGGATTTGTTCCCAGACTCAGGGTAGAAGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR TCA 90 bp CACCATGCTCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATaGGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGC +
Preference number: 1 (lower is better)
Translates to: HHAHCRVFLSTLWNP*DTCHCAPNPSPQLS
Trigger: GCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGAGCATGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR TCA 90 bp AGTTCCCTGACAGCAATGACGGCCAGGACAGGCCACAGACCAGTGTaGGGATACAAGCAGATCAGCAGTGACACAATCAGCAGGACTCTT +
Preference number: 1 (lower is better)
Translates to: SSLTAMTARTGHRPV*GYKQISSDTISRTL
Trigger: AAGAGTCCTGCTGATTGTGTCACTGCTGATCTGCTTGTATCCTCACACTGGTCTGTGGCCTGTCCTGGCCGTCATTGCTGTCAGGGAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR GCA 90 bp ACCAGGATCTTGGGCAAAGACCACAAGTCAAACTTCTTTGTTGCCTaGTGGTGCTTCTTACAGGTGGGACAGTACCAGGGGTCATGCTCC +
Preference number: 1 (lower is better)
Translates to: TRILGKDHKSNFFVA*WCFLQVGQYQGSCS
Trigger: GGAGCATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGTGGTCTTTGCCCAAGATCCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 90 bp AGGATCTTGGGCAAAGACCACAAGTCAAACTTCTTTGTTGCCTGCTaGTGCTTCTTACAGGTGGGACAGTACCAGGGGTCATGCTCCCCA +
Preference number: 1 (lower is better)
Translates to: RILGKDHKSNFFVAC*CFLQVGQYQGSCSP
Trigger: TGGGGAGCATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGTGGTCTTTGCCCAAGATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR GCA 90 bp AACCACCAGGATCTTGGGCAAAGACCACAAGTCAAACTTCTTTGTTaGCTGCTGGTGCTTCTTACAGGTGGGACAGTACCAGGGGTCATG +
Preference number: 1 (lower is better)
Translates to: NHQDLGQRPQVKLLC*LLVLLTGGTVPGVM
Trigger: CATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGTGGTCTTTGCCCAAGATCCTGGTGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR GCA 90 bp GCCCATCTCAATGAACAGCAAAGAACTAGAGGACAACATCAAATTTaGTGGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAG +
Preference number: 1 (lower is better)
Translates to: AHLNEQQRTRGQHQI*WRLGLLWPDYWGEQ
Trigger: CTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTTCATTGAGATGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR CCA 90 bp AGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTaGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAA +
Preference number: 1 (lower is better)
Translates to: RTRGQHQICWRLGLL*PDYWGEQCGHQNPK
Trigger: TTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR TCA 90 bp CGGTGTCAAGTTTATCCCGCCAGTATCTGTTATAGGAGAAACGCTTaGGGTGAACCACCAGGATCTTGGGCAAAGACCACAAGTCAAACT +
Preference number: 1 (lower is better)
Translates to: RCQVYPASICYRRNA*GEPPGSWAKTTSQT
Trigger: AGTTTGACTTGTGGTCTTTGCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATAACAGATACTGGCGGGATAAACTTGACACCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 90 bp CTGAAATCCACACTGCAGAAAGAGCTGGGGACAAATTTTAGGAGTTaGTTCTCTGCTTCTACCCTGAGTCTGGGAACAAATCCAGGTCAG +
Preference number: 1 (lower is better)
Translates to: LKSTLQKELGTNFRS*FSASTLSLGTNPGQ
Trigger: CTGACCTGGATTTGTTCCCAGACTCAGGGTAGAAGCAGAGAACCAACTCCTAAAATTTGTCCCCAGCTCTTTCTGCAGTGTGGATTTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 90 bp CATCTCAATGAACAGCAAAGAACTAGAGGACAACATCAAATTTGCTaGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGT +
Preference number: 1 (lower is better)
Translates to: HLNEQQRTRGQHQIC*RLGLLWPDYWGEQC
Trigger: ACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTTCATTGAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR TCA 90 bp AGTAAACAAAATTTTAACTACAAAGGTGGCCTTAAACTCAATCAATaGTCCTCCTGCCCGAGCAAGGAATTACAAGCATGCGACACCACA +
Preference number: 1 (lower is better)
Translates to: SKQNFNYKGGLKLNQ*SSCPSKELQACDTT
Trigger: TGTGGTGTCGCATGCTTGTAATTCCTTGCTCGGGCAGGAGGATCATTGATTGAGTTTAAGGCCACCTTTGTAGTTAAAATTTTGTTTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 90 bp AACAATAGCCCAATACTAACTTCATTTCATAACCGGGAAGGCGGCTaGAAAATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGA +
Preference number: 1 (lower is better)
Translates to: NNSPILTSFHNREGG*KILREQENRNGFQR
Trigger: TCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGTTAGTATTGGGCTATTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR TCA 90 bp GAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCCCCCATGCCCTGGTGTaGGCTGCTCAGCTTCACCCC +
Preference number: 2 (lower is better)
Translates to: ESKTQFGAALQVGLHGCTPHALV*AAQLHP
Trigger: GGGGTGAAGCTGAGCAGCTCACACCAGGGCATGGGG...GGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
3UTR-3UTR GCA 90 bp TACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTCTCCTGGGGGAGGATaGTGGTGTTGGGAGGGTGGC +
Preference number: 2 (lower is better)
Translates to: YWGEQCGHQNPKPSSEQPSPGGG*WCWEGG
Trigger: GCCACCCTCCCAACACCAGCATCCTCCCCCAGGAGA...GGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp TACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCCTGGTGTTGGGAGGGTaGCAGGGTCACAGAGGCCAC +
Preference number: 2 (lower is better)
Translates to: YWGEQCGHQNPKPSSEQPLVLGG*QGHRGH
Trigger: GTGGCCTCTGTGACCCTGCCACCCTCCCAACACCAG...GGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp GTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGAGCAGCCCTGCAGGTaGGTCTTCATGGCTGCACCA +
Preference number: 2 (lower is better)
Translates to: VRSSPAGGSSWLHHAHCREQPCR*VFMAAP
Trigger: TGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTC...CCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp TGGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAGTTCGGAGCAGCCCTaGAGGTGGGTCTTCATGGCT +
Preference number: 2 (lower is better)
Translates to: WRLGLLWPDYWGEQCGHQSSEQP*RWVFMA
Trigger: AGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACT...CTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp AACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATAGTTCGGAGCAGCCCTaGAGGTGGGTCTTCATGGCT +
Preference number: 2 (lower is better)
Translates to: NPVRSSPAGGSSWLHHAHSSEQP*RWVFMA
Trigger: AGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACT...ATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp CTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCCTGGGGGAGGATGCTaGTGTTGGGAGGGTGGCAGG +
Preference number: 2 (lower is better)
Translates to: LPLHSLESMRHMPLCTKPPGGGC*CWEGGR
Trigger: CCTGCCACCCTCCCAACACCAGCATCCTCCCCCAGG...GGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp TGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTTCCTCTCCACGTGGGTCTTCATGGCTaGACCATGCTCATTGCAGGG +
Preference number: 2 (lower is better)
Translates to: CRWVFMAAPCSLQGLPLHVGLHG*TMLIAG
Trigger: CCCTGCAATGAGCATGGTGCAGCCATGAAGACCCAC...GTGGAGAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp AGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATTGCCCTGGTGTGAGCTaGTCAGCTTCACCCCTCCAT +
Preference number: 2 (lower is better)
Translates to: RLGLLWPDYWGEQCGHQNCPGVS*SASPLH
Trigger: ATGGAGGGGTGAAGCTGAGCAGCTCACACCAGGGCA...ATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
3UTR-3UTR CCA 90 bp CTCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTCCTGGGGGAGGATGCTaGTGTTGGGAGGGTGGCAGG +
Preference number: 2 (lower is better)
Translates to: LIAGSSSPLFGIHETHATPGGGC*CWEGGR
Trigger: CCTGCCACCCTCCCAACACCAGCATCCTCCCCCAGG...AGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp CAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCCACAGATATTCTCCTaGGGGAGGATGCTGGTGTTG +
Preference number: 2 (lower is better)
Translates to: QNPVRSSPAGGSSWLHHAPQIFS*GRMLVL
Trigger: CAACACCAGCATCCTCCCCCAGGAGAATATCTGTGG...AGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTCATCCCCCATGCCCTaGTGTGAGCTGCTCAGCTTC +
Preference number: 2 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFSSPMP*CELLSF
Trigger: GAAGCTGAGCAGCTCACACCAGGGCATGGGGGATGA...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
3UTR-3UTR TCA 90 bp GAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGGTTTGAGATTGATATaGGCAGTCTTCAAGAGTGCC +
Preference number: 2 (lower is better)
Translates to: EQCGHQNPKPSSEQPCRWGLRLI*AVFKSA
Trigger: GGCACTCTTGAAGACTGCTCATATCAATCTCAAACC...CCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp GAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCAGCAGTCTTCAAGAGTaGCACAGATATTCTCCTGGG +
Preference number: 2 (lower is better)
Translates to: ESKTQFGAALQVGLHGCTSSLQE*HRYSPG
Trigger: CCCAGGAGAATATCTGTGGCACTCTTGAAGACTGCT...GGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp CCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGTTCATGGCTGCACCATaGTCATTGCAGGGTCTTCCT +
Preference number: 2 (lower is better)
Translates to: PDYWGEQCGHQNPKPSSEFMAAP*SLQGLP
Trigger: AGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAA...CTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp ATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGCCACAGATATTCTCCTaGGGGAGGATGCTGGTGTTG +
Preference number: 2 (lower is better)
Translates to: MRHMPLCTKPQPTIELHRPQIFS*GRMLVL
Trigger: CAACACCAGCATCCTCCCCCAGGAGAATATCTGTGG...CCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR TCA 90 bp GAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCGGTTTGAGATTGATATaGGCAGTCTTCAAGAGTGCC +
Preference number: 2 (lower is better)
Translates to: ESKTQFGAALQVGLHGCTGLRLI*AVFKSA
Trigger: GGCACTCTTGAAGACTGCTCATATCAATCTCAAACC...GGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp TCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGCTTTCGTCACTATCTaGTCCTCAGAGGCCAGGGAC +
Preference number: 2 (lower is better)
Translates to: SSPLFGIHETHATVHQTPAFVTI*SSEARD
Trigger: GTCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGC...TGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
3UTR-3UTR TCA 90 bp AGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATACTCTTTGGAATCCATaGGACACATGCCACTGTGCA +
Preference number: 2 (lower is better)
Translates to: RLGLLWPDYWGEQCGHQNTLWNP*DTCHCA
Trigger: TGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGT...ATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp CAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAATCTCCTGGGGGAGGATaGTGGTGTTGGGAGGGTGGC +
Preference number: 2 (lower is better)
Translates to: QPTIELHRFFSHHPFKRKSPGGG*WCWEGG
Trigger: GCCACCCTCCCAACACCAGCATCCTCCCCCAGGAGA...TTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCCGAGCGAAGATGTaGTGGAGCATTCGTCATCCC +
Preference number: 2 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLCRAKM*WSIRHP
Trigger: GGGATGACGAATGCTCCAGCACATCTTCGCTCGGCA...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
3UTR CAA 90 bp GAACCACCAGGATCTTGGGCAAAGACCACAAGTCAAACTTCTTTGTaGCCTGCTGGTGCTTCTTACAGGTGGGACAGTACCAGGGGTCAT +
Preference number: 2 (lower is better)
Translates to: EPPGSWAKTTSQTSL*PAGASYRWDSTRGH
Trigger: ATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGTGGTCTTTGCCCAAGATCCTGGTGGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR TCA 90 bp AAGGATTGCTCCACAAGTCACAAGTCAACCTCCCAGAGCCAAGTACTACAATCTGGGTCTCCATGGTGGTaGAGAGCTCGATGCACTCTC +
Preference number: 2 (lower is better)
Translates to: KDCSTSHKSTSQSQVLQSGSPWW*RARCTL
Trigger: GAGAGTGCATCGAGCTCTTCACCACCATGGAGACCC...AGATTGTAGTACTTGGCTCTGGGAGGTTGACTTGTGACTTGTGGAGCAATCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR TCA 90 bp CAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTCCTCAGCACCGAGAAACGCTTGAGGTaGACCACCAGGATCTTGGGC +
Preference number: 2 (lower is better)
Translates to: QVLQSNSSIYLLTSLLSTEKRLR*TTRILG
Trigger: GCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTC...GGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR CCA 90 bp AACAGAACTGAGCCTGTGCTGTCCTGGCTGAAGCCAAGTTCCCTGACAGCAATGGAACCACCAGGATCTTaGGCAAAGACCACAAGTCAA +
Preference number: 2 (lower is better)
Translates to: NRTEPVLSWLKPSSLTAMEPPGS*AKTTSQ
Trigger: TTGACTTGTGGTCTTTGCCCAAGATCCTGGTGGTTC...CATTGCTGTCAGGGAACTTGGCTTCAGCCAGGACAGCACAGGCTCAGTTCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR CCA 90 bp GCCTCGAACTCAGAAATCTGCCTGCCTCTTCAAAGGAATAAGGGGAGTGACTCACCAGGTCAGCAGGCTTaGGGGTCAAGGATTCTCAAT +
Preference number: 2 (lower is better)
Translates to: ASNSEICLPLQRNKGSDSPGQQA*GSRILN
Trigger: ATTGAGAATCCTTGACCCCCAAGCCTGCTGACCTGG...TGAGTCACTCCCCTTATTCCTTTGAAGAGGCAGGCAGATTTCTGAGTTCGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR GCA 90 bp AACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTTCTCCTGGGGGAGGATaGTGGTGTTGGGAGGGTGGC +
Preference number: 2 (lower is better)
Translates to: NSKELEDNIKFAGGLVYCSPGGG*WCWEGG
Trigger: GCCACCCTCCCAACACCAGCATCCTCCCCCAGGAGA...ACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp CTCGCCCTGTTAATAAGAAACAGAACTGAGCCTGTGCTGTCCTGGCTGAAGCCATTCTTTGTTGCCTGCTaGTGCTTCTTACAGGTGGGA +
Preference number: 2 (lower is better)
Translates to: LALLIRNRTEPVLSWLKPFFVAC*CFLQVG
Trigger: TCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAA...TGGCTTCAGCCAGGACAGCACAGGCTCAGTTCTGTTTCTTATTAACAGGGCGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR GCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGAGCAGTCTTCAAGAGTaGCACAGATATTCTCCTGGG +
Preference number: 2 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLSSLQE*HRYSPG
Trigger: CCCAGGAGAATATCTGTGGCACTCTTGAAGACTGCT...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp AGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAATGCCTGGGGGAGGATGCTaGTGTTGGGAGGGTGGCAGG +
Preference number: 2 (lower is better)
Translates to: RIETGFRDSLENYKPISMPGGGC*CWEGGR
Trigger: CCTGCCACCCTCCCAACACCAGCATCCTCCCCCAGG...CATTGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp CAAGGATTCTCAATGAGCTGCCTAGTCTCACCAGCCCATTATACAATTTTCAAACAGTACCAGGGGTCATaGTCCCCAAGGGTCTCCATG +
Preference number: 2 (lower is better)
Translates to: QGFSMSCLVSPAHYTIFKQYQGS*SPRVSM
Trigger: CATGGAGACCCTTGGGGAGCATGACCCCTGGTACTG...TTTGAAAATTGTATAATGGGCTGGTGAGACTAGGCAGCTCATTGAGAATCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR CCA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTACTGGTGTTGGGAGGGTaGCAGGGTCACAGAGGCCAC +
Preference number: 2 (lower is better)
Translates to: ILREQENRNGFQRQFRKLLVLGG*QGHRGH
Trigger: GTGGCCTCTGTGACCCTGCCACCCTCCCAACACCAG...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp AGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAATGGAGCAGCCCTGCAGGTaGGTCTTCATGGCTGCACCA +
Preference number: 2 (lower is better)
Translates to: RIETGFRDSLENYKPISMEQPCR*VFMAAP
Trigger: TGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTC...CATTGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR CCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGCAACATCAAATTTGCTaGAGGCTTGGTTTACTGTGG +
Preference number: 2 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLQHQIC*RLGLLW
Trigger: CCACAGTAAACCAAGCCTCCAGCAAATTTGATGTTG...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp AAGGATTGCTCCACAAGTCACAAGTCAACCTCCCAGAGCCAAGTACTACAATCTAACTTCTTTGTTGCCTaGTGGTGCTTCTTACAGGTG +
Preference number: 2 (lower is better)
Translates to: KDCSTSHKSTSQSQVLQSNFFVA*WCFLQV
Trigger: CACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTT...AGATTGTAGTACTTGGCTCTGGGAGGTTGACTTGTGACTTGTGGAGCAATCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR TCA 90 bp ACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAGAGAATACTCTTTGGAATCCATaGGACACATGCCACTGTGCA +
Preference number: 2 (lower is better)
Translates to: TSFHNREGGWKILREQENTLWNP*DTCHCA
Trigger: TGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGT...ATTCTCTTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR TCA 90 bp TGCCTCTTCAAAGGAATAAGGGGAGTGACTCAATCGTGCATAATTACTTTCTGCCTTAAACTCAATCAATaGTCCTCCTGCCCGAGCAAG +
Preference number: 2 (lower is better)
Translates to: CLFKGIRGVTQSCIITFCLKLNQ*SSCPSK
Trigger: CTTGCTCGGGCAGGAGGATCATTGATTGAGTTTAAG...GCAGAAAGTAATTATGCACGATTGAGTCACTCCCCTTATTCCTTTGAAGAGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR TCA 90 bp AGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAGGTTTGAGATTGATATaGGCAGTCTTCAAGAGTGCC +
Preference number: 2 (lower is better)
Translates to: SPQLSSTGFSLTTRLKEKGLRLI*AVFKSA
Trigger: GGCACTCTTGAAGACTGCTCATATCAATCTCAAACC...TTTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR-3UTR TCA 90 bp TCAATGAGCTGCCTAGTCTCACCAGCCCATTATACAATTTTCAAAAATAAAGAAGGCCACAGACCAGTGTaGGGATACAAGCAGATCAGC +
Preference number: 2 (lower is better)
Translates to: SMSCLVSPAHYTIFKNKEGHRPV*GYKQIS
Trigger: GCTGATCTGCTTGTATCCTCACACTGGTCTGTGGCC...TTCTTTATTTTTGAAAATTGTATAATGGGCTGGTGAGACTAGGCAGCTCATTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR CCA 90 bp AACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCCCACAGATATTCTCCTaGGGGAGGATGCTGGTGTTG +
Preference number: 2 (lower is better)
Translates to: NKRIETGFRDSLENYKPIPQIFS*GRMLVL
Trigger: CAACACCAGCATCCTCCCCCAGGAGAATATCTGTGG...GATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp AAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCATTCATGGCTGCACCATaGTCATTGCAGGGTCTTCCT +
Preference number: 2 (lower is better)
Translates to: KRIETGFRDSLENYKPISFMAAP*SLQGLP
Trigger: AGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAA...TGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR GCA 90 bp GGGAGTGACTCAATCGTGCATAATTACTTTCTGCTGACATTAGGGAATTGTTGTGTCAAACTTCTTTGTTaGCTGCTGGTGCTTCTTACA +
Preference number: 2 (lower is better)
Translates to: GSDSIVHNYFLLTLGNCCVKLLC*LLVLLT
Trigger: TGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGAC...ACAACAATTCCCTAATGTCAGCAGAAAGTAATTATGCACGATTGAGTCACTCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR TCA 90 bp TCAATGAGCTGCCTAGTCTCACCAGCCCATTATACAATTTTCAAAAATAAAGAAAATAAGAAACAGAACTaGGCCTGTGCTGTCCTGGCT +
Preference number: 2 (lower is better)
Translates to: SMSCLVSPAHYTIFKNKENKKQN*ACAVLA
Trigger: AGCCAGGACAGCACAGGCTCAGTTCTGTTTCTTATT...TTCTTTATTTTTGAAAATTGTATAATGGGCTGGTGAGACTAGGCAGCTCATTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR TCA 72 bp ACCAGGGGTCATGCTCCCCAAGGGTCTCCATGGTGGTaGAGAGCTCGATGCACTCTCGCAGGGCTACTGCCG +
Preference number: 3 (lower is better)
Translates to: TRGHAPQGSPWW*RARCTLAGLLP
Trigger: CGGCAGTAGCCCTGCGAGAGTGCATCGAGCTCTTCACCACCATGGAGACCCTTGGGGAGCATGACCCCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR TCA 72 bp CATGTTGTAAGCCTCCTCATCCCCCATGCCCTGGTGTaGGCTGCTCAGCTTCACCCCTCCATCAGAACCGGG +
Preference number: 3 (lower is better)
Translates to: HVVSLLIPHALV*AAQLHPSIRTG
Trigger: CCCGGTTCTGATGGAGGGGTGAAGCTGAGCAGCTCACACCAGGGCATGGGGGATGAGGAGGCTTACAACATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
3UTR GCA 72 bp CAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTaGACCATGCTCATTGCAGGGTCTTCCTCTCCACTC +
Preference number: 3 (lower is better)
Translates to: QFGAALQVGLHG*TMLIAGSSSPL
Trigger: GAGTGGAGAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR CCA 72 bp CAAGAGTGCCACAGATATTCTCCTGGGGGAGGATGCTaGTGTTGGGAGGGTGGCAGGGTCACAGAGGCCACA +
Preference number: 3 (lower is better)
Translates to: QECHRYSPGGGC*CWEGGRVTEAT
Trigger: TGTGGCCTCTGTGACCCTGCCACCCTCCCAACACCAGCATCCTCCCCCAGGAGAATATCTGTGGCACTCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR CCA 72 bp AACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATaGCTGCACCATGCTCATTGCAGGGTCTTCCTCTCC +
Preference number: 3 (lower is better)
Translates to: NPVRSSPAGGSS*LHHAHCRVFLS
Trigger: GGAGAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR CCA 72 bp CTCCCTCCTCAGCACCTGTGCACACACCCACCTGACTaGGAACTCCACCACGGTGTCAAGTTTATCCCGCCA +
Preference number: 3 (lower is better)
Translates to: LPPQHLCTHPPD*ELHHGVKFIPP
Trigger: TGGCGGGATAAACTTGACACCGTGGTGGAGTTCCCAGTCAGGTGGGTGTGTGCACAGGTGCTGAGGAGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR-3UTR CAA 90 bp TACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCGCTGCACCATGCTCATaGCAGGGTCTTCCTCTCCAC +
Preference number: 3 (lower is better)
Translates to: YWGEQCGHQNPKPSSEQPAAPCS*QGLPLH
Trigger: GTGGAGAGGAAGACCCTGCAATGAGCATGGTGCAGC...GGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR GCA 72 bp CAGCATCTATCTTCTCACCTCCCTCCTCAGCACCTGTaGACACACCCACCTGACTGGGAACTCCACCACGGT +
Preference number: 3 (lower is better)
Translates to: QHLSSHLPPQHL*THPPDWELHHG
Trigger: ACCGTGGTGGAGTTCCCAGTCAGGTGGGTGTGTGCACAGGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR GCA 72 bp AGTTGGTGTCCATGTTGTAAGCCTCCTCATCCCCCATaGCCTGGTGTGAGCTGCTCAGCTTCACCCCTCCAT +
Preference number: 3 (lower is better)
Translates to: SWCPCCKPPHPP*PGVSCSASPLH
Trigger: ATGGAGGGGTGAAGCTGAGCAGCTCACACCAGGGCATGGGGGATGAGGAGGCTTACAACATGGACACCAACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
3UTR CCA 72 bp CAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTaGGTCTTCATGGCTGCACCATGCTCATTGCAGGGT +
Preference number: 3 (lower is better)
Translates to: QNPKPSSEQPCR*VFMAAPCSLQG
Trigger: ACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR GCA 72 bp CTCCATCAGAACCGGGGAAACTGCCGAGCGAAGATGTaGTGGAGCATTCGTCATCCCGACGCTGATAGAACA +
Preference number: 3 (lower is better)
Translates to: LHQNRGNCRAKM*WSIRHPDADRT
Trigger: TGTTCTATCAGCGTCGGGATGACGAATGCTCCAGCACATCTTCGCTCGGCAGTTTCCCCGGTTCTGATGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
3UTR TCA 72 bp ACAGCAATGACGGCCAGGACAGGCCACAGACCAGTGTaGGGATACAAGCAGATCAGCAGTGACACAATCAGC +
Preference number: 3 (lower is better)
Translates to: TAMTARTGHRPV*GYKQISSDTIS
Trigger: GCTGATTGTGTCACTGCTGATCTGCTTGTATCCTCACACTGGTCTGTGGCCTGTCCTGGCCGTCATTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 72 bp GGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTaGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAG +
Preference number: 3 (lower is better)
Translates to: GQHQICWRLGLL*PDYWGEQCGHQ
Trigger: CTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR CCA 72 bp ACCCTGAGTCTGGGAACAAATCCAGGTCAGCAGGCTTaGGGGTCAAGGATTCTCAATGAGCTGCCTAGTCTC +
Preference number: 3 (lower is better)
Translates to: TLSLGTNPGQQA*GSRILNELPSL
Trigger: GAGACTAGGCAGCTCATTGAGAATCCTTGACCCCCAAGCCTGCTGACCTGGATTTGTTCCCAGACTCAGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR GCA 72 bp TTGGGCAAAGACCACAAGTCAAACTTCTTTGTTGCCTaGTGGTGCTTCTTACAGGTGGGACAGTACCAGGGG +
Preference number: 3 (lower is better)
Translates to: LGKDHKSNFFVA*WCFLQVGQYQG
Trigger: CCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGTGGTCTTTGCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 72 bp GGCAAAGACCACAAGTCAAACTTCTTTGTTGCCTGCTaGTGCTTCTTACAGGTGGGACAGTACCAGGGGTCA +
Preference number: 3 (lower is better)
Translates to: GKDHKSNFFVAC*CFLQVGQYQGS
Trigger: TGACCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGTGGTCTTTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 72 bp CTGTTAATAAGAAACAGAACTGAGCCTGTGCTGTCCTaGCTGAAGCCAAGTTCCCTGACAGCAATGACGGCC +
Preference number: 3 (lower is better)
Translates to: LLIRNRTEPVLS*LKPSSLTAMTA
Trigger: GGCCGTCATTGCTGTCAGGGAACTTGGCTTCAGCCAGGACAGCACAGGCTCAGTTCTGTTTCTTATTAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR TCA 72 bp GGACAAATTTTAGGAGTTGGTTCTCTGCTTCTACCCTaGGTCTGGGAACAAATCCAGGTCAGCAGGCTTGGG +
Preference number: 3 (lower is better)
Translates to: GQILGVGSLLLP*VWEQIQVSRLG
Trigger: CCCAAGCCTGCTGACCTGGATTTGTTCCCAGACTCAGGGTAGAAGCAGAGAACCAACTCCTAAAATTTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR TCA 72 bp GTTTATCCCGCCAGTATCTGTTATAGGAGAAACGCTTaGGGTGAACCACCAGGATCTTGGGCAAAGACCACA +
Preference number: 3 (lower is better)
Translates to: VYPASICYRRNA*GEPPGSWAKTT
Trigger: TGTGGTCTTTGCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATAACAGATACTGGCGGGATAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR GCA 72 bp GATCTTGGGCAAAGACCACAAGTCAAACTTCTTTGTTaGCTGCTGGTGCTTCTTACAGGTGGGACAGTACCA +
Preference number: 3 (lower is better)
Translates to: DLGQRPQVKLLC*LLVLLTGGTVP
Trigger: TGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGTGGTCTTTGCCCAAGATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
3UTR CCA 72 bp GAACAGCAAAGAACTAGAGGACAACATCAAATTTGCTaGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGT +
Preference number: 3 (lower is better)
Translates to: EQQRTRGQHQIC*RLGLLWPDYWG
Trigger: ACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR-3UTR CAA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTAGCTGCACCATGCTCATaGCAGGGTCTTCCTCTCCAC +
Preference number: 3 (lower is better)
Translates to: ILREQENRNGFQRQFRKLAAPCS*QGLPLH
Trigger: GTGGAGAGGAAGACCCTGCAATGAGCATGGTGCAGC...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR TCA 72 bp CTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTaGGAGAACAAGAGAATAGAAACGGGTTTCAGAGAC +
Preference number: 3 (lower is better)
Translates to: LHFITGKAAGKF*ENKRIETGFRD
Trigger: GTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR TCA 72 bp AAGGAGGTAATGTCCTCATCTGGTTTGAGATTGATATaGGCAGTCTTCAAGAGTGCCACAGATATTCTCCTG +
Preference number: 3 (lower is better)
Translates to: KEVMSSSGLRLI*AVFKSATDILL
Trigger: CAGGAGAATATCTGTGGCACTCTTGAAGACTGCTCATATCAATCTCAAACCAGATGAGGACATTACCTCCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
3UTR TCA 72 bp AATTTTAACTACAAAGGTGGCCTTAAACTCAATCAATaGTCCTCCTGCCCGAGCAAGGAATTACAAGCATGC +
Preference number: 3 (lower is better)
Translates to: NFNYKGGLKLNQ*SSCPSKELQAC
Trigger: GCATGCTTGTAATTCCTTGCTCGGGCAGGAGGATCATTGATTGAGTTTAAGGCCACCTTTGTAGTTAAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp GAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGCCGAGCTCCGTCTTCTaGGTCTCCACATCCGGTCGC +
Preference number: 4 (lower is better)
Translates to: EQCGHQNPKPSSEQPCRWPSSVF*VSTSGR
Trigger: GCGACCGGATGTGGAGACCCAGAAGACGGAGCTCGG...CCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTTCCTCTCCACCCCCATGCCCTGGTGTaGGCTGCTCAGCTTCACCCC +
Preference number: 4 (lower is better)
Translates to: CRWVFMAAPCSLQGLPLHPHALV*AAQLHP
Trigger: GGGGTGAAGCTGAGCAGCTCACACCAGGGCATGGGG...GTGGAGAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AGAGCTCGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTATCCGTGGTGCCACGTaGGTGTCCCTTCCAGACCAC +
Preference number: 4 (lower is better)
Translates to: RARCTLAGLLPPSSSSAAIRGAT*VSLPDH
Trigger: GTGGTCTGGAAGGGACACTCACGTGGCACCACGGAT...AGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCGAGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp AGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTTCCTCATCCGTGGTGCCACGTaGGTGTCCCTTCCAGACCAC +
Preference number: 4 (lower is better)
Translates to: SPAGGSSWLHHAHCRVFLIRGAT*VSLPDH
Trigger: GTGGTCTGGAAGGGACACTCACGTGGCACCACGGAT...GAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGGGTCTCCATGGTGGTaGAGAGCTCGATGCACTCTC +
Preference number: 4 (lower is better)
Translates to: VRSSPAGGSSWLHHAHCRGSPWW*RARCTL
Trigger: GAGAGTGCATCGAGCTCTTCACCACCATGGAGACCC...CCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGCCCCATGCCCTGGTGTaGGCTGCTCAGCTTCACCCC +
Preference number: 4 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPPHALV*AAQLHP
Trigger: GGGGTGAAGCTGAGCAGCTCACACCAGGGCATGGGG...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCCAGTACCAGGGGTCATaGTCCCCAAGGGTCTCCATG +
Preference number: 4 (lower is better)
Translates to: PKPSSEQPCRWVFMAAPCQYQGS*SPRVSM
Trigger: CATGGAGACCCTTGGGGAGCATGACCCCTGGTACTG...GCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCCGAGCTCCGTCTTCTaGGTCTCCACATCCGGTCGC +
Preference number: 4 (lower is better)
Translates to: PDYWGEQCGHQNPKPSSEPSSVF*VSTSGR
Trigger: GCGACCGGATGTGGAGACCCAGAAGACGGAGCTCGG...CTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGTCATCCCCCATGCCCTaGTGTGAGCTGCTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: EQCGHQNPKPSSEQPCRWSSPMP*CELLSF
Trigger: GAAGCTGAGCAGCTCACACCAGGGCATGGGGGATGA...CCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCGAGAGAGGCAGACACTaGGCAATAGGGACTTGCGGA +
Preference number: 4 (lower is better)
Translates to: PKPSSEQPCRWVFMAAPCERGRH*AIGTCG
Trigger: TCCGCAAGTCCCTATTGCTCAGTGTCTGCCTCTCTC...GCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035237.12
CDS-3UTR TCA 90 bp AAGAGCTCGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGGATAGGTCTGCACTaGGGGTCAGCAGGAACCAGG +
Preference number: 4 (lower is better)
Translates to: KSSMHSRRATAAFFFFCGWIGLH*GSAGTR
Trigger: CCTGGTTCCTGCTGACCCTCAGTGCAGACCTATCCA...GCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCGAGCTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp TACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCCGCATATGCAGTGTCTaGCTGGGAACTCCACCACGG +
Preference number: 4 (lower is better)
Translates to: YWGEQCGHQNPKPSSEQPRICSV*LGTPPR
Trigger: CCGTGGTGGAGTTCCCAGTCAGACACTGCATATGCG...GGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS-3UTR GCA 90 bp GGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGACAGTACCAGGGGTCATaGTCCCCAAGGGTCTCCATG +
Preference number: 4 (lower is better)
Translates to: GGLVYCGQTTGVSSVGTRQYQGS*SPRVSM
Trigger: CATGGAGACCCTTGGGGAGCATGACCCCTGGTACTG...TCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp TACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCCCAGATCCATTTGACTaGAGGCTCTGCCGGGGCCAT +
Preference number: 4 (lower is better)
Translates to: YWGEQCGHQNPKPSSEQPPDPFD*RLCRGH
Trigger: ATGGCCCCGGCAGAGCCTGCAGTCAAATGGATCTGG...GGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGTGCTACCACCGCATCTaGTCGCCCATTGGCGTCCTT +
Preference number: 4 (lower is better)
Translates to: GHQNPKPSSEQPCRWVFMCYHRI*SPIGVL
Trigger: AAGGACGCCAATGGGCGACCAGATGCGGTGGTAGCA...CATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGCTTTCGTCACTATCTaGTCCTCAGAGGCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: EQCGHQNPKPSSEQPCRWAFVTI*SSEARD
Trigger: GTCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGC...CCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTGCAGAGCAGAGTTCATaGAGCAAGTGTTCCCCAGGT +
Preference number: 4 (lower is better)
Translates to: GAALQVGLHGCTMLIAGSAEQSS*SKCSPG
Trigger: ACCTGGGGAACACTTGCTTCATGAACTCTGCTCTGC...AGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTGAGAAACGCTTGAGGTaGACCACCAGGATCTTGGGC +
Preference number: 4 (lower is better)
Translates to: QNPVRSSPAGGSSWLHHAEKRLR*TTRILG
Trigger: GCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTC...AGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGGAAGCCAGATCCATTTaGCTGCAGGCTCTGCCGGGG +
Preference number: 4 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPEARSI*LQALPG
Trigger: CCCCGGCAGAGCCTGCAGTCAAATGGATCTGGCTTC...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGATCGTCCTCACCACTaGCTTCCACTTCGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: VRSSPAGGSSWLHHAHCRDRPHH*LPLRKA
Trigger: AGCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATC...CCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTGCCTTCTTCTTCTTCTaGGGCTGTGACATGCTCAGG +
Preference number: 4 (lower is better)
Translates to: GAALQVGLHGCTMLIAGSAFFFF*GCDMLR
Trigger: CCTGAGCATGTCACAGCCGCAGAAGAAGAAGAAGGC...AGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp TACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCCGAGCGAAGATGTaGTGGAGCATTCGTCATCCC +
Preference number: 4 (lower is better)
Translates to: YWGEQCGHQNPKPSSEQPCRAKM*WSIRHP
Trigger: GGGATGACGAATGCTCCAGCACATCTTCGCTCGGCA...GGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATTGCCCTGGTGTGAGCTaGTCAGCTTCACCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: IQNPVRSSPAGGSSWLHHCPGVS*SASPLH
Trigger: ATGGAGGGGTGAAGCTGAGCAGCTCACACCAGGGCA...ATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGAATGGCCCCCATCAATaGCACAGTCACACGGTACTG +
Preference number: 4 (lower is better)
Translates to: VRSSPAGGSSWLHHAHCRNGPHQ*HSHTVL
Trigger: CAGTACCGTGTGACTGTGCCATTGATGGGGGCCATT...CCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGCACACAGGTCAGAAATaGCCCCCATCAATGGCACAG +
Preference number: 4 (lower is better)
Translates to: VRSSPAGGSSWLHHAHCRHTGQK*PPSMAQ
Trigger: CTGTGCCATTGATGGGGGCCATTTCTGACCTGTGTG...CCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACAGCAGAGCAGAGTTCATaGAGCAAGTGTTCCCCAGGT +
Preference number: 4 (lower is better)
Translates to: RCTLAGLLPPSSSSAAVTAEQSS*SKCSPG
Trigger: ACCTGGGGAACACTTGCTTCATGAACTCTGCTCTGC...TGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp AGAGCTCGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGAGGGTTGTCTCGGTTaGTCTCGGCCTCATACTCAT +
Preference number: 4 (lower is better)
Translates to: RARCTLAGLLPPSSSSAAEGCLG*SRPHTH
Trigger: ATGAGTATGAGGCCGAGATCAACCGAGACAACCCTC...AGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCGAGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp GATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGCGCATATGCAGTGTCTaGCTGGGAACTCCACCACGG +
Preference number: 4 (lower is better)
Translates to: DRTTRRRLSSLSGPQRPGRICSV*LGTPPR
Trigger: CCGTGGTGGAGTTCCCAGTCAGACACTGCATATGCG...CCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR GCA 90 bp CGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACAGATCGTCCTCACCACTaGCTTCCACTTCGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: RCTLAGLLPPSSSSAAVTDRPHH*LPLRKA
Trigger: AGCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATC...TGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp GGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAGATCGTCCTCACCACTaGCTTCCACTTCGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: GGLVYCGQTTGVSSVGTRDRPHH*LPLRKA
Trigger: AGCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATC...TCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTGCCTTCTTCTTCTTCTaGGGCTGTGACATGCTCAGG +
Preference number: 4 (lower is better)
Translates to: QNPVRSSPAGGSSWLHHAAFFFF*GCDMLR
Trigger: CCTGAGCATGTCACAGCCGCAGAAGAAGAAGAAGGC...AGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp AGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGACACAGTACCAGGGGTCATaGTCCCCAAGGGTCTCCATG +
Preference number: 4 (lower is better)
Translates to: RTTRRRLSSLSGPQRPGTQYQGS*SPRVSM
Trigger: CATGGAGACCCTTGGGGAGCATGACCCCTGGTACTG...TGTCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CCA 90 bp TGCCTGCTGGTGCTTCTTACAGGTGGGACAGTACCAGGGGTCATGCTCCCCAAGCACACAGGTCAGAAATaGCCCCCATCAATGGCACAG +
Preference number: 4 (lower is better)
Translates to: CLLVLLTGGTVPGVMLPKHTGQK*PPSMAQ
Trigger: CTGTGCCATTGATGGGGGCCATTTCTGACCTGTGTG...CTTGGGGAGCATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp ATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGTTCAGAGCTCTGACTaGGAACTCCACCACGGTGTC +
Preference number: 4 (lower is better)
Translates to: IQNPVRSSPAGGSSWLHHVQSSD*ELHHGV
Trigger: GACACCGTGGTGGAGTTCCCAGTCAGAGCTCTGAAC...ATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGTGTCATCTCGAGGCGTaGTGTGGCTTAAACCTTCAT +
Preference number: 4 (lower is better)
Translates to: VRSSPAGGSSWLHHAHCRCHLEA*CGLNLH
Trigger: ATGAAGGTTTAAGCCACATCACGCCTCGAGATGACA...CCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTGTCATCTCGAGGCGTaGTGTGGCTTAAACCTTCAT +
Preference number: 4 (lower is better)
Translates to: PKPSSEQPCRWVFMAAPCCHLEA*CGLNLH
Trigger: ATGAAGGTTTAAGCCACATCACGCCTCGAGATGACA...GCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACAGCTCTAAGGGTGAGCTaGGAAACTCATCAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: RCTLAGLLPPSSSSAAVTALRVS*ETHQAK
Trigger: CTTTGCCTGATGAGTTTCTCAGCTCACCCTTAGAGC...TGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp GGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAGCTCTAAGGGTGAGCTaGGAAACTCATCAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: GGLVYCGQTTGVSSVGTRALRVS*ETHQAK
Trigger: CTTTGCCTGATGAGTTTCTCAGCTCACCCTTAGAGC...TCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCCCGTCAGTTGCCAGTaGATTGATATCAGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: QNPVRSSPAGGSSWLHHAPVSCQ*IDISSS
Trigger: GGAACTGCTGATATCAATTCACTGGCAACTGACGGG...AGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCCCCGTCAGTTGCCAGTaGATTGATATCAGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: ESKTQFGAALQVGLHGCTPVSCQ*IDISSS
Trigger: GGAACTGCTGATATCAATTCACTGGCAACTGACGGG...GGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGACCCGTCAGTTGCCAGTaGATTGATATCAGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: GGLVYCGQTTGVSSVGTRPVSCQ*IDISSS
Trigger: GGAACTGCTGATATCAATTCACTGGCAACTGACGGG...TCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTGGGTCTCCATGGTGGTaGAGAGCTCGATGCACTCTC +
Preference number: 4 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFGSPWW*RARCTL
Trigger: GAGAGTGCATCGAGCTCTTCACCACCATGGAGACCC...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGAGGGTCTCCATGGTGGTaGAGAGCTCGATGCACTCTC +
Preference number: 4 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGGSPWW*RARCTL
Trigger: GAGAGTGCATCGAGCTCTTCACCACCATGGAGACCC...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR TCA 90 bp AGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGACAGAGAAACGCTTGAGGTaGACCACCAGGATCTTGGGC +
Preference number: 4 (lower is better)
Translates to: RTTRRRLSSLSGPQRPGTEKRLR*TTRILG
Trigger: GCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTC...TGTCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR TCA 90 bp GGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAAACATAAGGCCTTGCTaGCCGGTCACAGACAAACTC +
Preference number: 4 (lower is better)
Translates to: GGLVYCGQTTGVSSVGTRNIRPC*PVTDKL
Trigger: GAGTTTGTCTGTGACCGGTCAGCAAGGCCTTATGTT...TCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTCCAGGAAACAGGTTATaGTCCCCGACATTGTACATG +
Preference number: 4 (lower is better)
Translates to: GAALQVGLHGCTMLIAGSPGNRL*SPTLYM
Trigger: CATGTACAATGTCGGGGAGCATAACCTGTTTCCTGG...AGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATTTTCTGACAATAGGCTaGTGGCCCTCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: IQNPVRSSPAGGSSWLHHFLTIG*WPSTQP
Trigger: TGGCTGTGTGGAGGGCCAGCAGCCTATTGTCAGAAA...ATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCACTTCCACTTTGCAGTaGTTGACAAACAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: PKPSSEQPCRWVFMAAPCTSTLQ*LTNRPC
Trigger: GCATGGCCTGTTTGTCAAGCACTGCAAAGTGGAAGT...GCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCGTGTTGCTCAGGCACTaGAGAGCAGAGTTCATGAAG +
Preference number: 4 (lower is better)
Translates to: ESKTQFGAALQVGLHGCTVLLRH*RAEFMK
Trigger: CTTCATGAACTCTGCTCTGCAGTGCCTGAGCAACAC...GGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp TACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCGTGTTGCTCAGGCACTaGAGAGCAGAGTTCATGAAG +
Preference number: 4 (lower is better)
Translates to: YWGEQCGHQNPKPSSEQPVLLRH*RAEFMK
Trigger: CTTCATGAACTCTGCTCTGCAGTGCCTGAGCAACAC...GGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGGATCGTCCTCACCACTaGCTTCCACTTCGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: PDYWGEQCGHQNPKPSSEDRPHH*LPLRKA
Trigger: AGCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATC...CTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GCCTCGAACTCAGAAATCTGCCTGCCTCTTCAAAGGAATAAGGGGAGTGACTCACACTGCGCCCCACGTTaGAGCGTGGTCCCCATCAAG +
Preference number: 4 (lower is better)
Translates to: ASNSEICLPLQRNKGSDSHCAPR*SVVPIK
Trigger: CTTGATGGGGACCACGCTCCAACGTGGGGCGCAGTG...TGAGTCACTCCCCTTATTCCTTTGAAGAGGCAGGCAGATTTCTGAGTTCGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp TACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCGGCAACTTAGCACATTaGTGGGGTCACTGTTCTCAC +
Preference number: 4 (lower is better)
Translates to: YWGEQCGHQNPKPSSEQPGNLAH*WGHCSH
Trigger: GTGAGAACAGTGACCCCACCAATGTGCTAAGTTGCC...GGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCAAAGTACTCAGTCAGTaGGGCAGTGTTGCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: ESKTQFGAALQVGLHGCTKVLSQ*GSVAQA
Trigger: TGCCTGAGCAACACTGCCCCACTGACTGAGTACTTT...GGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AACAGAACTGAGCCTGTGCTGTCCTGGCTGAAGCCAAGTTCCCTGACAGCAATGTGCTACCACCGCATCTaGTCGCCCATTGGCGTCCTT +
Preference number: 4 (lower is better)
Translates to: NRTEPVLSWLKPSSLTAMCYHRI*SPIGVL
Trigger: AAGGACGCCAATGGGCGACCAGATGCGGTGGTAGCA...CATTGCTGTCAGGGAACTTGGCTTCAGCCAGGACAGCACAGGCTCAGTTCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp AGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTTCCTCCAATGCCAGACAGCTTaGAGAGTGCTTCACACAGGT +
Preference number: 4 (lower is better)
Translates to: SPAGGSSWLHHAHCRVFLQCQTA*RVLHTG
Trigger: ACCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTG...GAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTAGTAGACTGGAAGAGTaGTACACTCTGAGCCATCCA +
Preference number: 4 (lower is better)
Translates to: QNPVRSSPAGGSSWLHHASRLEE*YTLSHP
Trigger: TGGATGGCTCAGAGTGTATCACTCTTCCAGTCTACT...AGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GCTGATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGAGAAACGCTTGAGGTaGACCACCAGGATCTTGGGC +
Preference number: 4 (lower is better)
Translates to: ADRTTRRRLSSLSGPQRPEKRLR*TTRILG
Trigger: GCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTC...TGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR GCA 90 bp GGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGACATACTTCTTCCACTaGTTGAACCACCGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: GHQNPKPSSEQPCRWVFMTYFFH*LNHRLS
Trigger: TGACAGCCGGTGGTTCAAGCAGTGGAAGAAGTATGT...CATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCACTTCCACTTTGCAGTaGTTGACAAACAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: ESKTQFGAALQVGLHGCTTSTLQ*LTNRPC
Trigger: GCATGGCCTGTTTGTCAAGCACTGCAAAGTGGAAGT...GGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGTATTTTCTGCAGCAATaGCAGACAGCTTGGAGAGTG +
Preference number: 4 (lower is better)
Translates to: EQCGHQNPKPSSEQPCRWYFLQQ*QTAWRV
Trigger: CACTCTCCAAGCTGTCTGGCATTGCTGCAGAAAATA...CCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCAGGCCAGGGACACACTaGTATCATCAAAGTAATACC +
Preference number: 4 (lower is better)
Translates to: PKPSSEQPCRWVFMAAPCRPGTH*YHQSNT
Trigger: GGTATTACTTTGATGATAGCAGTGTGTCCCTGGCCT...GCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp ACCTCCCAGAGCCAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCCGAGCTCCGTCTTCTaGGTCTCCACATCCGGTCGC +
Preference number: 4 (lower is better)
Translates to: TSQSQVLQSNSSIYLLTSPSSVF*VSTSGR
Trigger: GCGACCGGATGTGGAGACCCAGAAGACGGAGCTCGG...GGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTGGCTCTGGGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp CAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTTACAGCCCAGCATCCTaGATAGTGTTGTCTAGCTTG +
Preference number: 4 (lower is better)
Translates to: QNPVRSSPAGGSSWLHHAYSPAS*IVLSSL
Trigger: CAAGCTAGACAACACTATCCAGGATGCTGGGCTGTA...AGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCACTGTCCCAGTCAATaGCCAGTGTGGATCGAGAGT +
Preference number: 4 (lower is better)
Translates to: RLGLLWPDYWGEQCGHQNHCPSQ*PVWIES
Trigger: ACTCTCGATCCACACTGGCCATTGACTGGGACAGTG...ATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGACACACTGTCCCAGTCAATaGCCAGTGTGGATCGAGAGT +
Preference number: 4 (lower is better)
Translates to: RTTRRRLSSLSGPQRPGTHCPSQ*PVWIES
Trigger: ACTCTCGATCCACACTGGCCATTGACTGGGACAGTG...TGTCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR TCA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTGAGGGTTGTCTCGGTTaGTCTCGGCCTCATACTCAT +
Preference number: 4 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFEGCLG*SRPHTH
Trigger: ATGAGTATGAGGCCGAGATCAACCGAGACAACCCTC...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGGATAGGTCTGCACTaGGGGTCAGCAGGAACCAGG +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLWIGLH*GSAGTR
Trigger: CCTGGTTCCTGCTGACCCTCAGTGCAGACCTATCCA...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp ATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATTGTCATCTCGAGGCGTaGTGTGGCTTAAACCTTCAT +
Preference number: 4 (lower is better)
Translates to: IQNPVRSSPAGGSSWLHHCHLEA*CGLNLH
Trigger: ATGAAGGTTTAAGCCACATCACGCCTCGAGATGACA...ATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGCCCGTCAGTTGCCAGTaGATTGATATCAGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: DRTTRRRLSSLSGPQRPGPVSCQ*IDISSS
Trigger: GGAACTGCTGATATCAATTCACTGGCAACTGACGGG...CCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR TCA 90 bp CAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCATATAGGAGAAACGCTTaGGGTGAACCACCAGGATCT +
Preference number: 4 (lower is better)
Translates to: QNPKPSSEQPCRWVFMAAYRRNA*GEPPGS
Trigger: AGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATA...TGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp ATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGAACATAAGGCCTTGCTaGCCGGTCACAGACAAACTC +
Preference number: 4 (lower is better)
Translates to: MRHMPLCTKPQPTIELHRNIRPC*PVTDKL
Trigger: GAGTTTGTCTGTGACCGGTCAGCAAGGCCTTATGTT...CCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CAGCAGGCTTGGGGGTCAAGGATTCTCAATGAGCTGCCTAGTCTCACCAGCCCACCAGGAAACAGGTTATaGTCCCCGACATTGTACATG +
Preference number: 4 (lower is better)
Translates to: QQAWGSRILNELPSLTSPPGNRL*SPTLYM
Trigger: CATGTACAATGTCGGGGAGCATAACCTGTTTCCTGG...TGGGCTGGTGAGACTAGGCAGCTCATTGAGAATCCTTGACCCCCAAGCCTGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp TGCCTGCTGGTGCTTCTTACAGGTGGGACAGTACCAGGGGTCATGCTCCCCAAGAGTGCTATCACCATTTaGAATGAGAGAGGCAGACAC +
Preference number: 4 (lower is better)
Translates to: CLLVLLTGGTVPGVMLPKSAITI*NERGRH
Trigger: GTGTCTGCCTCTCTCATTGCAAATGGTGATAGCACT...CTTGGGGAGCATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp GAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCTATTTTCTGCAGCAATaGCAGACAGCTTGGAGAGTG +
Preference number: 4 (lower is better)
Translates to: ESKTQFGAALQVGLHGCTYFLQQ*QTAWRV
Trigger: CACTCTCCAAGCTGTCTGGCATTGCTGCAGAAAATA...GGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACATATTTTCTGCAGCAATaGCAGACAGCTTGGAGAGTG +
Preference number: 4 (lower is better)
Translates to: RCTLAGLLPPSSSSAAVTYFLQQ*QTAWRV
Trigger: CACTCTCCAAGCTGTCTGGCATTGCTGCAGAAAATA...TGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp GGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAGACCACCATATTTTCTaGAGCAATGCCAGACAGCTT +
Preference number: 4 (lower is better)
Translates to: GGLVYCGQTTGVSSVGTRDHHIF*SNARQL
Trigger: AAGCTGTCTGGCATTGCTGCAGAAAATATGGTGGTC...TCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GCTGATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGATCGTCCTCACCACTaGCTTCCACTTCGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: ADRTTRRRLSSLSGPQRPDRPHH*LPLRKA
Trigger: AGCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATC...TGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR GCA 90 bp GCTGATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGCCTTCTTCTTCTTCTaGGGCTGTGACATGCTCAGG +
Preference number: 4 (lower is better)
Translates to: ADRTTRRRLSSLSGPQRPAFFFF*GCDMLR
Trigger: CCTGAGCATGTCACAGCCGCAGAAGAAGAAGAAGGC...TGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR GCA 90 bp GAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCAAACTTCTTTGTTaGCTGCTGGTGCTTCTTACA +
Preference number: 4 (lower is better)
Translates to: EQCGHQNPKPSSEQPCRWVKLLC*LLVLLT
Trigger: TGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGAC...CCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAGTGCCATCTTCATTTTaGGGCTCAATTACTAGCACC +
Preference number: 4 (lower is better)
Translates to: GGLVYCGQTTGVSSVGTRVPSSF*GSITST
Trigger: GGTGCTAGTAATTGAGCCCCAAAATGAAGATGGCAC...TCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACACGATCACAAACAGCCTaGTACAAAGACTCTAGGGTT +
Preference number: 4 (lower is better)
Translates to: RCTLAGLLPPSSSSAAVTRSQTA*YKDSRV
Trigger: AACCCTAGAGTCTTTGTACCAGGCTGTTTGTGATCG...TGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp GCTGATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCACACTGTCCCAGTCAATaGCCAGTGTGGATCGAGAGT +
Preference number: 4 (lower is better)
Translates to: ADRTTRRRLSSLSGPQRPHCPSQ*PVWIES
Trigger: ACTCTCGATCCACACTGGCCATTGACTGGGACAGTG...TGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CCA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGAGGTGCTTCTTACAGGTaGGACAGTACCAGGGGTCAT +
Preference number: 4 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGGASYR*DSTRGH
Trigger: ATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACC...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CCA 90 bp TTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGGCTTTCGTCACTATCTaGTCCTCAGAGGCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: LESMRHMPLCTKPQPTIEAFVTI*SSEARD
Trigger: GTCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGC...CTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
3UTR CAA 72 bp GACACATGCCACTGTGCACCAAACCCCAGCCCACAATaGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTA +
Preference number: 4 (lower is better)
Translates to: DTCHCAPNPSPQ*SSTGFSLTTRL
Trigger: TAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGCAGAGCAGAGTTCATaGAGCAAGTGTTCCCCAGGT +
Preference number: 4 (lower is better)
Translates to: SSPLFGIHETHATVHQTPAEQSS*SKCSPG
Trigger: ACCTGGGGAACACTTGCTTCATGAACTCTGCTCTGC...TGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTGCTCTAAGGGTGAGCTaGGAAACTCATCAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFALRVS*ETHQAK
Trigger: CTTTGCCTGATGAGTTTCTCAGCTCACCCTTAGAGC...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGCAGTTGCCAGTGAATTaGTATCAGCAGTTCCACAGG +
Preference number: 4 (lower is better)
Translates to: DRTTRRRLSSLSGPQRPGQLPVN*YQQFHR
Trigger: CCTGTGGAACTGCTGATATCAATTCACTGGCAACTG...CCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR TCA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTATAGGAGAAACGCTTaGGGTGAACCACCAGGATCT +
Preference number: 4 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPYRRNA*GEPPGS
Trigger: AGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATA...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTTTGACAAACAGGCCATaGTCCACAACTTTTCTGACA +
Preference number: 4 (lower is better)
Translates to: QNPVRSSPAGGSSWLHHALTNRP*STTFLT
Trigger: TGTCAGAAAAGTTGTGGAGCATGGCCTGTTTGTCAA...AGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGCCGTGTTTCACGTTCTaGAGGGATGTTGAAGAGCTT +
Preference number: 4 (lower is better)
Translates to: MRHMPLCTKPQPTIELHRPCFTF*RDVEEL
Trigger: AAGCTCTTCAACATCCCTGCAGAACGTGAAACACGG...CCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGACCACCATATTTTCTaGAGCAATGCCAGACAGCTT +
Preference number: 4 (lower is better)
Translates to: IQNPVRSSPAGGSSWLHHDHHIF*SNARQL
Trigger: AAGCTGTCTGGCATTGCTGCAGAAAATATGGTGGTC...ATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCACACACAGGTCAGAAATaGCCCCCATCAATGGCACAG +
Preference number: 4 (lower is better)
Translates to: SSPLFGIHETHATVHQTPHTGQK*PPSMAQ
Trigger: CTGTGCCATTGATGGGGGCCATTTCTGACCTGTGTG...TGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTCAATGCCAGACAGCTTaGAGAGTGCTTCACACAGGT +
Preference number: 4 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFQCQTA*RVLHTG
Trigger: ACCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTG...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGTCTCGAGGCGTGATGTaGCTTAAACCTTCATCCATT +
Preference number: 4 (lower is better)
Translates to: PDYWGEQCGHQNPKPSSESRGVM*LKPSSI
Trigger: AATGGATGAAGGTTTAAGCCACATCACGCCTCGAGA...CTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCGATCACAAACAGCCTaGTACAAAGACTCTAGGGTT +
Preference number: 4 (lower is better)
Translates to: GLVYCGQTTGVSSVGTRIRSQTA*YKDSRV
Trigger: AACCCTAGAGTCTTTGTACCAGGCTGTTTGTGATCG...GATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCGGTGCTTCTTACAGGTaGGACAGTACCAGGGGTCAT +
Preference number: 4 (lower is better)
Translates to: LPLHSLESMRHMPLCTKPGASYR*DSTRGH
Trigger: ATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACC...GGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGGAACCACCAGGATCTTaGGCAAAGACCACAAGTCAA +
Preference number: 4 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPEPPGS*AKTTSQ
Trigger: TTGACTTGTGGTCTTTGCCCAAGATCCTGGTGGTTC...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGAGGCTGTATATGAGGTaGTGGGGGCTCCTGGCAATT +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLRLYMR*WGLLAI
Trigger: AATTGCCAGGAGCCCCCATCACCTCATATACAGCCT...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTATTTTGTGGAAGCGGTaGTTATATACATCAGTGACC +
Preference number: 4 (lower is better)
Translates to: QNPVRSSPAGGSSWLHHAILWKR*LYTSVT
Trigger: GGTCACTGATGTATATAATCACCGCTTCCACAAAAT...AGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AAGAGCTCGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCATTTTGTGGAAGCGGTaGTTATATACATCAGTGACC +
Preference number: 4 (lower is better)
Translates to: KSSMHSRRATAAFFFFCGILWKR*LYTSVT
Trigger: GGTCACTGATGTATATAATCACCGCTTCCACAAAAT...GCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCGAGCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGAAGTAGACTGGAAGAGTaGTACACTCTGAGCCATCCA +
Preference number: 4 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGSRLEE*YTLSHP
Trigger: TGGATGGCTCAGAGTGTATCACTCTTCCAGTCTACT...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS-3UTR TCA 90 bp GTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCAGTTGCCAGTGAATTaGTATCAGCAGTTCCACAGG +
Preference number: 4 (lower is better)
Translates to: VYCGQTTGVSSVGTRIQNQLPVN*YQQFHR
Trigger: CCTGTGGAACTGCTGATATCAATTCACTGGCAACTG...GTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGATATAGGAGAAACGCTTaGGGTGAACCACCAGGATCT +
Preference number: 4 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGYRRNA*GEPPGS
Trigger: AGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATA...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR GCA 90 bp GCCTCGAACTCAGAAATCTGCCTGCCTCTTCAAAGGAATAAGGGGAGTGACTCATTTCTGACAATAGGCTaGTGGCCCTCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: ASNSEICLPLQRNKGSDSFLTIG*WPSTQP
Trigger: TGGCTGTGTGGAGGGCCAGCAGCCTATTGTCAGAAA...TGAGTCACTCCCCTTATTCCTTTGAAGAGGCAGGCAGATTTCTGAGTTCGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp AGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTTCCTCAGTTGCAATGGTGTCTaGTTTGCTAAAATGGCAACT +
Preference number: 4 (lower is better)
Translates to: SPAGGSSWLHHAHCRVFLSCNGV*FAKMAT
Trigger: AGTTGCCATTTTAGCAAAGCAGACACCATTGCAACT...GAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp AACAGAACTGAGCCTGTGCTGTCCTGGCTGAAGCCAAGTTCCCTGACAGCAATGCCGTGTTTCACGTTCTaGAGGGATGTTGAAGAGCTT +
Preference number: 4 (lower is better)
Translates to: NRTEPVLSWLKPSSLTAMPCFTF*RDVEEL
Trigger: AAGCTCTTCAACATCCCTGCAGAACGTGAAACACGG...CATTGCTGTCAGGGAACTTGGCTTCAGCCAGGACAGCACAGGCTCAGTTCTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp CCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAACTGACACCGGAGCTGTaGATCCCAGAGCTGTTAGTG +
Preference number: 4 (lower is better)
Translates to: PSPQLSSTGFSLTTRLKELTPEL*IPELLV
Trigger: CACTAACAGCTCTGGGATGCACAGCTCCGGTGTCAG...TTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035237.12
CDS-3UTR GCA 90 bp TTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTGCTTGATGAGCTCTaGATAGGCCTCTGCAATCTC +
Preference number: 4 (lower is better)
Translates to: LESMRHMPLCTKPQPTIELLDEL*IGLCNL
Trigger: GAGATTGCAGAGGCCTATGCAGAGCTCATCAAGCAG...CTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCTTCTCACAGGCCTaGGGAGAGAAGCACTCAGAT +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLCFSQA*GEKHSD
Trigger: ATCTGAGTGCTTCTCTCCGCAGGCCTGTGAGAAGCA...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS-3UTR CCA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGAACTTAGCACATTGGTaGGGTCACTGTTCTCACAGA +
Preference number: 4 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPNLAHW*GHCSHR
Trigger: TCTGTGAGAACAGTGACCCCACCAATGTGCTAAGTT...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGAAAGTACTCAGTCAGTaGGGCAGTGTTGCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: LESMRHMPLCTKPQPTIEKVLSQ*GSVAQA
Trigger: TGCCTGAGCAACACTGCCCCACTGACTGAGTACTTT...CTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGAATGGCCCCCATCAATaGCACAGTCACACGGTACTG +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLNGPHQ*HSHTVL
Trigger: CAGTACCGTGTGACTGTGCCATTGATGGGGGCCATT...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGCACACAGGTCAGAAATaGCCCCCATCAATGGCACAG +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLHTGQK*PPSMAQ
Trigger: CTGTGCCATTGATGGGGGCCATTTCTGACCTGTGTG...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GGTCACAGAGGCCACATCAGTTGGTGTCCATGTTGTAAGCCTCCTCATCCCCCATCTCGAGGCGTGATGTaGCTTAAACCTTCATCCATT +
Preference number: 4 (lower is better)
Translates to: GHRGHISWCPCCKPPHPPSRGVM*LKPSSI
Trigger: AATGGATGAAGGTTTAAGCCACATCACGCCTCGAGA...TGGGGGATGAGGAGGCTTACAACATGGACACCAACTGATGTGGCCTCTGTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS-3UTR CCA 90 bp GCTGATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCATTCTTTGTTGCCTGCTaGTGCTTCTTACAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: ADRTTRRRLSSLSGPQRPFFVAC*CFLQVG
Trigger: TCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAA...TGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CCA 90 bp GCTGATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGAACCACCAGGATCTTaGGCAAAGACCACAAGTCAA +
Preference number: 4 (lower is better)
Translates to: ADRTTRRRLSSLSGPQRPEPPGS*AKTTSQ
Trigger: TTGACTTGTGGTCTTTGCCCAAGATCCTGGTGGTTC...TGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR TCA 90 bp GTATCTGTTATAGGAGAAACGCTTGAGGTGAACCACCAGGATCTTGGGCAAAGAGAGAGAGGCAGACACTaGGCAATAGGGACTTGCGGA +
Preference number: 4 (lower is better)
Translates to: VSVIGETLEVNHQDLGQRERGRH*AIGTCG
Trigger: TCCGCAAGTCCCTATTGCTCAGTGTCTGCCTCTCTC...TCTTTGCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATAACAGATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp ACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAGAGAATATCCGTGGTGCCACGTaGGTGTCCCTTCCAGACCAC +
Preference number: 4 (lower is better)
Translates to: TSFHNREGGWKILREQENIRGAT*VSLPDH
Trigger: GTGGTCTGGAAGGGACACTCACGTGGCACCACGGAT...ATTCTCTTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTTCCTCGATTATATACATCAGTaGCCACCATATTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: SPAGGSSWLHHAHCRVFLDYIHQ*PPYFLQ
Trigger: CTGCAGAAAATATGGTGGTCACTGATGTATATAATC...GAGGAAGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACAGATTATATACATCAGTaGCCACCATATTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: RCTLAGLLPPSSSSAAVTDYIHQ*PPYFLQ
Trigger: CTGCAGAAAATATGGTGGTCACTGATGTATATAATC...TGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp ATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATATTTTGTGGAAGCGGTaGTTATATACATCAGTGACC +
Preference number: 4 (lower is better)
Translates to: IQNPVRSSPAGGSSWLHHILWKR*LYTSVT
Trigger: GGTCACTGATGTATATAATCACCGCTTCCACAAAAT...ATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCACAGTTGCCAGTGAATTaGTATCAGCAGTTCCACAGG +
Preference number: 4 (lower is better)
Translates to: SSPLFGIHETHATVHQTPQLPVN*YQQFHR
Trigger: CCTGTGGAACTGCTGATATCAATTCACTGGCAACTG...TGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp TCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAACATACTTCTTCCACTaGTTGAACCACCGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: SSPLFGIHETHATVHQTPTYFFH*LNHRLS
Trigger: TGACAGCCGGTGGTTCAAGCAGTGGAAGAAGTATGT...TGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp TTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCCGTGTTTCACGTTCTaGAGGGATGTTGAAGAGCTT +
Preference number: 4 (lower is better)
Translates to: LESMRHMPLCTKPQPTIEPCFTF*RDVEEL
Trigger: AAGCTCTTCAACATCCCTGCAGAACGTGAAACACGG...CTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GTATCTGTTATAGGAGAAACGCTTGAGGTGAACCACCAGGATCTTGGGCAAAGACTGACACCGGAGCTGTaGATCCCAGAGCTGTTAGTG +
Preference number: 4 (lower is better)
Translates to: VSVIGETLEVNHQDLGQRLTPEL*IPELLV
Trigger: CACTAACAGCTCTGGGATGCACAGCTCCGGTGTCAG...TCTTTGCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATAACAGATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp GTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACAACTTCTTTGTTGCCTaGTGGTGCTTCTTACAGGTG +
Preference number: 4 (lower is better)
Translates to: VYCGQTTGVSSVGTRIQNNFFVA*WCFLQV
Trigger: CACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTT...GTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGAAACTTCTTTGTTGCCTaGTGGTGCTTCTTACAGGTG +
Preference number: 4 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGNFFVA*WCFLQV
Trigger: CACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTT...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR GCA 90 bp GGTCACAGAGGCCACATCAGTTGGTGTCCATGTTGTAAGCCTCCTCATCCCCCAGTCAAACTTCTTTGTTaGCTGCTGGTGCTTCTTACA +
Preference number: 4 (lower is better)
Translates to: GHRGHISWCPCCKPPHPPVKLLC*LLVLLT
Trigger: TGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGAC...TGGGGGATGAGGAGGCTTACAACATGGACACCAACTGATGTGGCCTCTGTGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS-3UTR GCA 90 bp GATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGGTCAAACTTCTTTGTTaGCTGCTGGTGCTTCTTACA +
Preference number: 4 (lower is better)
Translates to: DRTTRRRLSSLSGPQRPGVKLLC*LLVLLT
Trigger: TGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGAC...CCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CCA 90 bp ACCTCCCAGAGCCAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCGGTGATGGGGGCTCCTaGCAATTATACGAAGCAGAG +
Preference number: 4 (lower is better)
Translates to: TSQSQVLQSNSSIYLLTSGDGGS*QLYEAE
Trigger: CTCTGCTTCGTATAATTGCCAGGAGCCCCCATCACC...GGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTGGCTCTGGGAGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp GGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAGATTTGAAAAGGCCATaGAAAGTATCCACAATCACA +
Preference number: 4 (lower is better)
Translates to: GGLVYCGQTTGVSSVGTRDLKRP*KVSTIT
Trigger: TGTGATTGTGGATACTTTCCATGGCCTTTTCAAATC...TCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTCTCGAGGCGTGATGTaGCTTAAACCTTCATCCATT +
Preference number: 4 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFSRGVM*LKPSSI
Trigger: AATGGATGAAGGTTTAAGCCACATCACGCCTCGAGA...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTGGCTCCATAGTGATTaGACACAGCAATTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPWLHSD*TQQLGH
Trigger: ATGACCTAATTGCTGTGTCCAATCACTATGGAGCCA...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AAGGATTGCTCCACAAGTCACAAGTCAACCTCCCAGAGCCAAGTACTACAATCTAGGCTGTATATGAGGTaGTGGGGGCTCCTGGCAATT +
Preference number: 4 (lower is better)
Translates to: KDCSTSHKSTSQSQVLQSRLYMR*WGLLAI
Trigger: AATTGCCAGGAGCCCCCATCACCTCATATACAGCCT...AGATTGTAGTACTTGGCTCTGGGAGGTTGACTTGTGACTTGTGGAGCAATCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp GTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACCCTCATACTCATCTTTaGGAAAGTACTCAGTCAGTG +
Preference number: 4 (lower is better)
Translates to: VYCGQTTGVSSVGTRIQNPHTHL*ESTQSV
Trigger: CACTGACTGAGTACTTTCTCAAAGATGAGTATGAGG...GTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCAAAACCAAAGTCGATTTaGAAAGGCCATGGAAAGTAT +
Preference number: 4 (lower is better)
Translates to: QNPKPSSEQPCRWVFMAAKPKSI*KGHGKY
Trigger: ATACTTTCCATGGCCTTTTCAAATCGACTTTGGTTT...TGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGATTTTGTGGAAGCGGTaGTTATATACATCAGTGACC +
Preference number: 4 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPILWKR*LYTSVT
Trigger: GGTCACTGATGTATATAATCACCGCTTCCACAAAAT...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGAGTAGACTGGAAGAGTaGTACACTCTGAGCCATCCA +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLSRLEE*YTLSHP
Trigger: TGGATGGCTCAGAGTGTATCACTCTTCCAGTCTACT...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGCAGTTGCCAGTGAATTaGTATCAGCAGTTCCACAGG +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLQLPVN*YQQFHR
Trigger: CCTGTGGAACTGCTGATATCAATTCACTGGCAACTG...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTCCTCAGCACCGTGTTGCTCAGGCACTaGAGAGCAGAGTTCATGAAG +
Preference number: 4 (lower is better)
Translates to: QVLQSNSSIYLLTSLLSTVLLRH*RAEFMK
Trigger: CTTCATGAACTCTGCTCTGCAGTGCCTGAGCAACAC...GGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp TCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAAGACAGCTTGGAGAGTaGTTCACACAGGTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: SSPLFGIHETHATVHQTPRQLGE*FTQVRN
Trigger: ATTTCTGACCTGTGTGAAGCACTCTCCAAGCTGTCT...TGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCGACCACCATATTTTCTaGAGCAATGCCAGACAGCTT +
Preference number: 4 (lower is better)
Translates to: LPLHSLESMRHMPLCTKPDHHIF*SNARQL
Trigger: AAGCTGTCTGGCATTGCTGCAGAAAATATGGTGGTC...GGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GCCTCGAACTCAGAAATCTGCCTGCCTCTTCAAAGGAATAAGGGGAGTGACTCATACAGCCCAGCATCCTaGATAGTGTTGTCTAGCTTG +
Preference number: 4 (lower is better)
Translates to: ASNSEICLPLQRNKGSDSYSPAS*IVLSSL
Trigger: CAAGCTAGACAACACTATCCAGGATGCTGGGCTGTA...TGAGTCACTCCCCTTATTCCTTTGAAGAGGCAGGCAGATTTCTGAGTTCGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp CTCGCCCTGTTAATAAGAAACAGAACTGAGCCTGTGCTGTCCTGGCTGAAGCCAGTGCCATCTTCATTTTaGGGCTCAATTACTAGCACC +
Preference number: 4 (lower is better)
Translates to: LALLIRNRTEPVLSWLKPVPSSF*GSITST
Trigger: GGTGCTAGTAATTGAGCCCCAAAATGAAGATGGCAC...TGGCTTCAGCCAGGACAGCACAGGCTCAGTTCTGTTTCTTATTAACAGGGCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp CAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTCCTCAGCACCCAATGCCAGACAGCTTaGAGAGTGCTTCACACAGGT +
Preference number: 4 (lower is better)
Translates to: QVLQSNSSIYLLTSLLSTQCQTA*RVLHTG
Trigger: ACCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTG...GGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp TTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCGATCACAAACAGCCTaGTACAAAGACTCTAGGGTT +
Preference number: 4 (lower is better)
Translates to: LESMRHMPLCTKPQPTIERSQTA*YKDSRV
Trigger: AACCCTAGAGTCTTTGTACCAGGCTGTTTGTGATCG...CTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTTCTTTGTTGCCTGCTaGTGCTTCTTACAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLFFVAC*CFLQVG
Trigger: TCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAA...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAGGCTGTATATGAGGTaGTGGGGGCTCCTGGCAATT +
Preference number: 4 (lower is better)
Translates to: QPTIELHRFFSHHPFKRKRLYMR*WGLLAI
Trigger: AATTGCCAGGAGCCCCCATCACCTCATATACAGCCT...TTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTTGGATAGGTCTGCACTaGGGGTCAGCAGGAACCAGG +
Preference number: 4 (lower is better)
Translates to: NSKELEDNIKFAGGLVYCWIGLH*GSAGTR
Trigger: CCTGGTTCCTGCTGACCCTCAGTGCAGACCTATCCA...ACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGGATTATATACATCAGTaGCCACCATATTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPDYIHQ*PPYFLQ
Trigger: CTGCAGAAAATATGGTGGTCACTGATGTATATAATC...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTCCTCAGCACCCAGTTGCCAGTGAATTaGTATCAGCAGTTCCACAGG +
Preference number: 4 (lower is better)
Translates to: QVLQSNSSIYLLTSLLSTQLPVN*YQQFHR
Trigger: CCTGTGGAACTGCTGATATCAATTCACTGGCAACTG...GGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp AAGGATTGCTCCACAAGTCACAAGTCAACCTCCCAGAGCCAAGTACTACAATCTCCCGTCAGTTGCCAGTaGATTGATATCAGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: KDCSTSHKSTSQSQVLQSPVSCQ*IDISSS
Trigger: GGAACTGCTGATATCAATTCACTGGCAACTGACGGG...AGATTGTAGTACTTGGCTCTGGGAGGTTGACTTGTGACTTGTGGAGCAATCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp ACCTCCCAGAGCCAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCACTTCCACTTTGCAGTaGTTGACAAACAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: TSQSQVLQSNSSIYLLTSTSTLQ*LTNRPC
Trigger: GCATGGCCTGTTTGTCAAGCACTGCAAAGTGGAAGT...GGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTGGCTCTGGGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp CTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCTCCTTCTCAATAGTTaGAATGGTGTCTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: LPLHSLESMRHMPLCTKPLLLNS*NGVCFA
Trigger: AGCAAAGCAGACACCATTGCAACTATTGAGAAGGAG...GGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CTCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTAGTGCTATCACCATTTaGAATGAGAGAGGCAGACAC +
Preference number: 4 (lower is better)
Translates to: LIAGSSSPLFGIHETHATSAITI*NERGRH
Trigger: GTGTCTGCCTCTCTCATTGCAAATGGTGATAGCACT...AGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035237.12
CDS-3UTR GCA 90 bp AAGGATTGCTCCACAAGTCACAAGTCAACCTCCCAGAGCCAAGTACTACAATCTCTGCTTGATGAGCTCTaGATAGGCCTCTGCAATCTC +
Preference number: 4 (lower is better)
Translates to: KDCSTSHKSTSQSQVLQSLLDEL*IGLCNL
Trigger: GAGATTGCAGAGGCCTATGCAGAGCTCATCAAGCAG...AGATTGTAGTACTTGGCTCTGGGAGGTTGACTTGTGACTTGTGGAGCAATCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp AGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAATGCCGAGCGAAGATGTaGTGGAGCATTCGTCATCCC +
Preference number: 4 (lower is better)
Translates to: SPQLSSTGFSLTTRLKEKCRAKM*WSIRHP
Trigger: GGGATGACGAATGCTCCAGCACATCTTCGCTCGGCA...TTTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCCACTGCGCCCCACGTTaGAGCGTGGTCCCCATCAAG +
Preference number: 4 (lower is better)
Translates to: NKRIETGFRDSLENYKPIHCAPR*SVVPIK
Trigger: CTTGATGGGGACCACGCTCCAACGTGGGGCGCAGTG...GATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AAGGGAGAGCTAATGAAAGTTCCACATAGAATCACTTTATCAAGGGCAGTGGGGGGTGATGGGGGCTCCTaGCAATTATACGAAGCAGAG +
Preference number: 4 (lower is better)
Translates to: KGELMKVPHRITLSRAVGGDGGS*QLYEAE
Trigger: CTCTGCTTCGTATAATTGCCAGGAGCCCCCATCACC...CCCCACTGCCCTTGATAAAGTGATTCTATGTGGAACTTTCATTAGCTCTCCCTT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAGAACCACCAGGATCTTaGGCAAAGACCACAAGTCAA +
Preference number: 4 (lower is better)
Translates to: PSPQLSSTGFSLTTRLKEEPPGS*AKTTSQ
Trigger: TTGACTTGTGGTCTTTGCCCAAGATCCTGGTGGTTC...TTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp GCCTCGAACTCAGAAATCTGCCTGCCTCTTCAAAGGAATAAGGGGAGTGACTCACCTCATACTCATCTTTaGGAAAGTACTCAGTCAGTG +
Preference number: 4 (lower is better)
Translates to: ASNSEICLPLQRNKGSDSPHTHL*ESTQSV
Trigger: CACTGACTGAGTACTTTCTCAAAGATGAGTATGAGG...TGAGTCACTCCCCTTATTCCTTTGAAGAGGCAGGCAGATTTCTGAGTTCGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp GTATCTGTTATAGGAGAAACGCTTGAGGTGAACCACCAGGATCTTGGGCAAAGATGTCATCTCGAGGCGTaGTGTGGCTTAAACCTTCAT +
Preference number: 4 (lower is better)
Translates to: VSVIGETLEVNHQDLGQRCHLEA*CGLNLH
Trigger: ATGAAGGTTTAAGCCACATCACGCCTCGAGATGACA...TCTTTGCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATAACAGATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp AAGGATTGCTCCACAAGTCACAAGTCAACCTCCCAGAGCCAAGTACTACAATCTAGTAGACTGGAAGAGTaGTACACTCTGAGCCATCCA +
Preference number: 4 (lower is better)
Translates to: KDCSTSHKSTSQSQVLQSSRLEE*YTLSHP
Trigger: TGGATGGCTCAGAGTGTATCACTCTTCCAGTCTACT...AGATTGTAGTACTTGGCTCTGGGAGGTTGACTTGTGACTTGTGGAGCAATCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp GTATCTGTTATAGGAGAAACGCTTGAGGTGAACCACCAGGATCTTGGGCAAAGAACATACTTCTTCCACTaGTTGAACCACCGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: VSVIGETLEVNHQDLGQRTYFFH*LNHRLS
Trigger: TGACAGCCGGTGGTTCAAGCAGTGGAAGAAGTATGT...TCTTTGCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATAACAGATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp CTCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTCTCCTTCTCAATAGTTaGAATGGTGTCTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: LIAGSSSPLFGIHETHATLLLNS*NGVCFA
Trigger: AGCAAAGCAGACACCATTGCAACTATTGAGAAGGAG...AGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp AAGGGAGAGCTAATGAAAGTTCCACATAGAATCACTTTATCAAGGGCAGTGGGGCTGCTTGATGAGCTCTaGATAGGCCTCTGCAATCTC +
Preference number: 4 (lower is better)
Translates to: KGELMKVPHRITLSRAVGLLDEL*IGLCNL
Trigger: GAGATTGCAGAGGCCTATGCAGAGCTCATCAAGCAG...CCCCACTGCCCTTGATAAAGTGATTCTATGTGGAACTTTCATTAGCTCTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ACCTCCCAGAGCCAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCGACCACCATATTTTCTaGAGCAATGCCAGACAGCTT +
Preference number: 4 (lower is better)
Translates to: TSQSQVLQSNSSIYLLTSDHHIF*SNARQL
Trigger: AAGCTGTCTGGCATTGCTGCAGAAAATATGGTGGTC...GGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTGGCTCTGGGAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp GACAAAACAGAACTTCTAGGAGTCTGTGAGAAACTGAAAACAATAGCCCAATACCAGTACCAGGGGTCATaGTCCCCAAGGGTCTCCATG +
Preference number: 4 (lower is better)
Translates to: DKTELLGVCEKLKTIAQYQYQGS*SPRVSM
Trigger: CATGGAGACCCTTGGGGAGCATGACCCCTGGTACTG...GTATTGGGCTATTGTTTTCAGTTTCTCACAGACTCCTAGAAGTTCTGTTTTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CCCATCTCAATGAACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCGGCAACTTAGCACATTaGTGGGGTCACTGTTCTCAC +
Preference number: 4 (lower is better)
Translates to: PISMNSKELEDNIKFAGGGNLAH*WGHCSH
Trigger: GTGAGAACAGTGACCCCACCAATGTGCTAAGTTGCC...GCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTTCATTGAGATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGGCTCCATAGTGATTaGACACAGCAATTAGGTCAT +
Preference number: 4 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLWLHSD*TQQLGH
Trigger: ATGACCTAATTGCTGTGTCCAATCACTATGGAGCCA...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAGTGACCAACCCCCATaGCTCCATAGTGATTGGACA +
Preference number: 4 (lower is better)
Translates to: QPTIELHRFFSHHPFKRKSDQPP*LHSDWT
Trigger: TGTCCAATCACTATGGAGCCATGGGGGTTGGTCACT...TTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAATGTGGATAGGTCTGCACTaGGGGTCAGCAGGAACCAGG +
Preference number: 4 (lower is better)
Translates to: RIETGFRDSLENYKPISMWIGLH*GSAGTR
Trigger: CCTGGTTCCTGCTGACCCTCAGTGCAGACCTATCCA...CATTGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAATGGGGTCTCCATGGTGGTaGAGAGCTCGATGCACTCTC +
Preference number: 4 (lower is better)
Translates to: RIETGFRDSLENYKPISMGSPWW*RARCTL
Trigger: GAGAGTGCATCGAGCTCTTCACCACCATGGAGACCC...CATTGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp AACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTTTTCTGACAATAGGCTaGTGGCCCTCCACACAGCCA +
Preference number: 4 (lower is better)
Translates to: NSKELEDNIKFAGGLVYCFLTIG*WPSTQP
Trigger: TGGCTGTGTGGAGGGCCAGCAGCCTATTGTCAGAAA...ACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTCCTCAGCACCTTGACAAACAGGCCATaGTCCACAACTTTTCTGACA +
Preference number: 4 (lower is better)
Translates to: QVLQSNSSIYLLTSLLSTLTNRP*STTFLT
Trigger: TGTCAGAAAAGTTGTGGAGCATGGCCTGTTTGTCAA...GGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp CAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTCCTCAGCACCCTCCTTCTCAATAGTTaGAATGGTGTCTGCTTTGCT +
Preference number: 4 (lower is better)
Translates to: QVLQSNSSIYLLTSLLSTLLLNS*NGVCFA
Trigger: AGCAAAGCAGACACCATTGCAACTATTGAGAAGGAG...GGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp TGCCTCTTCAAAGGAATAAGGGGAGTGACTCAATCGTGCATAATTACTTTCTGCGGCAACTTAGCACATTaGTGGGGTCACTGTTCTCAC +
Preference number: 4 (lower is better)
Translates to: CLFKGIRGVTQSCIITFCGNLAH*WGHCSH
Trigger: GTGAGAACAGTGACCCCACCAATGTGCTAAGTTGCC...GCAGAAAGTAATTATGCACGATTGAGTCACTCCCCTTATTCCTTTGAAGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp AACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTGGTGATGGGGGCTCCTaGCAATTATACGAAGCAGAG +
Preference number: 4 (lower is better)
Translates to: NSKELEDNIKFAGGLVYCGDGGS*QLYEAE
Trigger: CTCTGCTTCGTATAATTGCCAGGAGCCCCCATCACC...ACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp ATACTAACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAACACTGTCCCAGTCAATaGCCAGTGTGGATCGAGAGT +
Preference number: 4 (lower is better)
Translates to: ILTSFHNREGGWKILREQHCPSQ*PVWIES
Trigger: ACTCTCGATCCACACTGGCCATTGACTGGGACAGTG...TTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGTTAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp ATACTAACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAGGTGCTTCTTACAGGTaGGACAGTACCAGGGGTCAT +
Preference number: 4 (lower is better)
Translates to: ILTSFHNREGGWKILREQGASYR*DSTRGH
Trigger: ATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACC...TTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGTTAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AAGGGAGAGCTAATGAAAGTTCCACATAGAATCACTTTATCAAGGGCAGTGGGGTTCTTTGTTGCCTGCTaGTGCTTCTTACAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: KGELMKVPHRITLSRAVGFFVAC*CFLQVG
Trigger: TCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAA...CCCCACTGCCCTTGATAAAGTGATTCTATGTGGAACTTTCATTAGCTCTCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp GACAAAACAGAACTTCTAGGAGTCTGTGAGAAACTGAAAACAATAGCCCAATACGTTCAGAGCTCTGACTaGGAACTCCACCACGGTGTC +
Preference number: 4 (lower is better)
Translates to: DKTELLGVCEKLKTIAQYVQSSD*ELHHGV
Trigger: GACACCGTGGTGGAGTTCCCAGTCAGAGCTCTGAAC...GTATTGGGCTATTGTTTTCAGTTTCTCACAGACTCCTAGAAGTTCTGTTTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAATGGAGAAACGCTTGAGGTaGACCACCAGGATCTTGGGC +
Preference number: 4 (lower is better)
Translates to: RIETGFRDSLENYKPISMEKRLR*TTRILG
Trigger: GCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTC...CATTGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp ACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAGAGAATTATAGGAGAAACGCTTaGGGTGAACCACCAGGATCT +
Preference number: 4 (lower is better)
Translates to: TSFHNREGGWKILREQENYRRNA*GEPPGS
Trigger: AGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATA...ATTCTCTTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp CAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAACTTCTTTGTTGCCTaGTGGTGCTTCTTACAGGTG +
Preference number: 4 (lower is better)
Translates to: QPTIELHRFFSHHPFKRKNFFVA*WCFLQV
Trigger: CACCTGTAAGAAGCACCAGCAGGCAACAAAGAAGTT...TTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAACTTAGCACATTGGTaGGGTCACTGTTCTCACAGA +
Preference number: 4 (lower is better)
Translates to: QPTIELHRFFSHHPFKRKNLAHW*GHCSHR
Trigger: TCTGTGAGAACAGTGACCCCACCAATGTGCTAAGTT...TTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTG
44% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp CTCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGATTTGAAAAGGCCATaGAAAGTATCCACAATCACA +
Preference number: 4 (lower is better)
Translates to: LIAGSSSPLFGIHETHATDLKRP*KVSTIT
Trigger: TGTGATTGTGGATACTTTCCATGGCCTTTTCAAATC...AGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAATTCTTTGTTGCCTGCTaGTGCTTCTTACAGGTGGGA +
Preference number: 4 (lower is better)
Translates to: SPQLSSTGFSLTTRLKEKFFVAC*CFLQVG
Trigger: TCCCACCTGTAAGAAGCACCAGCAGGCAACAAAGAA...TTTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp ATACTAACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAAGTGACCAACCCCCATaGCTCCATAGTGATTGGACA +
Preference number: 4 (lower is better)
Translates to: ILTSFHNREGGWKILREQSDQPP*LHSDWT
Trigger: TGTCCAATCACTATGGAGCCATGGGGGTTGGTCACT...TTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGTTAGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATCATCCCCCATGCCCTaGTGTGAGCTGCTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: ILREQENRNGFQRQFRKLSSPMP*CELLSF
Trigger: GAAGCTGAGCAGCTCACACCAGGGCATGGGGGATGA...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAGAGGGTTGTCTCGGTTaGTCTCGGCCTCATACTCAT +
Preference number: 4 (lower is better)
Translates to: KRIETGFRDSLENYKPISEGCLG*SRPHTH
Trigger: ATGAGTATGAGGCCGAGATCAACCGAGACAACCCTC...TGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp ACCTCCCAGAGCCAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCAAACCAAAGTCGATTTaGAAAGGCCATGGAAAGTAT +
Preference number: 4 (lower is better)
Translates to: TSQSQVLQSNSSIYLLTSKPKSI*KGHGKY
Trigger: ATACTTTCCATGGCCTTTTCAAATCGACTTTGGTTT...GGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTGGCTCTGGGAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp ACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAGAGAATTATTTTCTGCAGCAATaGCAGACAGCTTGGAGAGTG +
Preference number: 4 (lower is better)
Translates to: TSFHNREGGWKILREQENYFLQQ*QTAWRV
Trigger: CACTCTCCAAGCTGTCTGGCATTGCTGCAGAAAATA...ATTCTCTTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp TTTGAGATTGATATGAGCAGTCTTCAAGAGTGCCACAGATATTCTCCTGGGGGAGTCAAACTTCTTTGTTaGCTGCTGGTGCTTCTTACA +
Preference number: 4 (lower is better)
Translates to: FEIDMSSLQECHRYSPGGVKLLC*LLVLLT
Trigger: TGTAAGAAGCACCAGCAGGCAACAAAGAAGTTTGAC...TCCCCCAGGAGAATATCTGTGGCACTCTTGAAGACTGCTCATATCAATCTCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAGAGAATAGGCCAGGGACACACTaGTATCATCAAAGTAATACC +
Preference number: 4 (lower is better)
Translates to: TSFHNREGGWKILREQENRPGTH*YHQSNT
Trigger: GGTATTACTTTGATGATAGCAGTGTGTCCCTGGCCT...ATTCTCTTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTTACAGCCCAGCATCCTaGATAGTGTTGTCTAGCTTG +
Preference number: 4 (lower is better)
Translates to: NSKELEDNIKFAGGLVYCYSPAS*IVLSSL
Trigger: CAAGCTAGACAACACTATCCAGGATGCTGGGCTGTA...ACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp AGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAGTGCCATCTTCATTTTaGGGCTCAATTACTAGCACC +
Preference number: 4 (lower is better)
Translates to: SPQLSSTGFSLTTRLKEKVPSSF*GSITST
Trigger: GGTGCTAGTAATTGAGCCCCAAAATGAAGATGGCAC...TTTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp ACCTCCCAGAGCCAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCGATTTGAAAAGGCCATaGAAAGTATCCACAATCACA +
Preference number: 4 (lower is better)
Translates to: TSQSQVLQSNSSIYLLTSDLKRP*KVSTIT
Trigger: TGTGATTGTGGATACTTTCCATGGCCTTTTCAAATC...GGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTGGCTCTGGGAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp GACAAAACAGAACTTCTAGGAGTCTGTGAGAAACTGAAAACAATAGCCCAATACCAATGCCAGACAGCTTaGAGAGTGCTTCACACAGGT +
Preference number: 4 (lower is better)
Translates to: DKTELLGVCEKLKTIAQYQCQTA*RVLHTG
Trigger: ACCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTG...GTATTGGGCTATTGTTTTCAGTTTCTCACAGACTCCTAGAAGTTCTGTTTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp AGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAATGGCTCTAAGGGTGAGCTaGGAAACTCATCAGGCAAAG +
Preference number: 4 (lower is better)
Translates to: RIETGFRDSLENYKPISMALRVS*ETHQAK
Trigger: CTTTGCCTGATGAGTTTCTCAGCTCACCCTTAGAGC...CATTGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GGGAGTGACTCAATCGTGCATAATTACTTTCTGCTGACATTAGGGAATTGTTGTAGACAGCTTGGAGAGTaGTTCACACAGGTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: GSDSIVHNYFLLTLGNCCRQLGE*FTQVRN
Trigger: ATTTCTGACCTGTGTGAAGCACTCTCCAAGCTGTCT...ACAACAATTCCCTAATGTCAGCAGAAAGTAATTATGCACGATTGAGTCACTCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp ATACTAACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAAGACAGCTTGGAGAGTaGTTCACACAGGTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: ILTSFHNREGGWKILREQRQLGE*FTQVRN
Trigger: ATTTCTGACCTGTGTGAAGCACTCTCCAAGCTGTCT...TTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGTTAGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTAGCCTTCTTCTTCTTCTaGGGCTGTGACATGCTCAGG +
Preference number: 4 (lower is better)
Translates to: ILREQENRNGFQRQFRKLAFFFF*GCDMLR
Trigger: CCTGAGCATGTCACAGCCGCAGAAGAAGAAGAAGGC...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTAAATGGCCCCCATCAATaGCACAGTCACACGGTACTG +
Preference number: 4 (lower is better)
Translates to: ILREQENRNGFQRQFRKLNGPHQ*HSHTVL
Trigger: CAGTACCGTGTGACTGTGCCATTGATGGGGGCCATT...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCAATGAGCTGCCTAGTCTCACCAGCCCATTATACAATTTTCAAAAATAAAGAAAATGGCCCCCATCAATaGCACAGTCACACGGTACTG +
Preference number: 4 (lower is better)
Translates to: SMSCLVSPAHYTIFKNKENGPHQ*HSHTVL
Trigger: CAGTACCGTGTGACTGTGCCATTGATGGGGGCCATT...TTCTTTATTTTTGAAAATTGTATAATGGGCTGGTGAGACTAGGCAGCTCATTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp GGGAGTGACTCAATCGTGCATAATTACTTTCTGCTGACATTAGGGAATTGTTGTTCTCGAGGCGTGATGTaGCTTAAACCTTCATCCATT +
Preference number: 4 (lower is better)
Translates to: GSDSIVHNYFLLTLGNCCSRGVM*LKPSSI
Trigger: AATGGATGAAGGTTTAAGCCACATCACGCCTCGAGA...ACAACAATTCCCTAATGTCAGCAGAAAGTAATTATGCACGATTGAGTCACTCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CCA 90 bp AACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTCGATCACAAACAGCCTaGTACAAAGACTCTAGGGTT +
Preference number: 4 (lower is better)
Translates to: NSKELEDNIKFAGGLVYCRSQTA*YKDSRV
Trigger: AACCCTAGAGTCTTTGTACCAGGCTGTTTGTGATCG...ACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTAGGTGCTTCTTACAGGTaGGACAGTACCAGGGGTCAT +
Preference number: 4 (lower is better)
Translates to: ILREQENRNGFQRQFRKLGASYR*DSTRGH
Trigger: ATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACC...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCTTTCCTTCCTCTTCTCATAAAAGGAGGTAATGTCCTCATCTGGTTTGAGATTGAACCACCAGGATCTTaGGCAAAGACCACAAGTCAA +
Preference number: 4 (lower is better)
Translates to: SFLPLLIKGGNVLIWFEIEPPGS*AKTTSQ
Trigger: TTGACTTGTGGTCTTTGCCCAAGATCCTGGTGGTTC...AATCTCAAACCAGATGAGGACATTACCTCCTTTTATGAGAAGAGGAAGGAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR TCA 90 bp CCCATCTCAATGAACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCAAACCAAAGTCGATTTaGAAAGGCCATGGAAAGTAT +
Preference number: 4 (lower is better)
Translates to: PISMNSKELEDNIKFAGGKPKSI*KGHGKY
Trigger: ATACTTTCCATGGCCTTTTCAAATCGACTTTGGTTT...GCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTTCATTGAGATGGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp AACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTTTGACAAACAGGCCATaGTCCACAACTTTTCTGACA +
Preference number: 4 (lower is better)
Translates to: NSKELEDNIKFAGGLVYCLTNRP*STTFLT
Trigger: TGTCAGAAAAGTTGTGGAGCATGGCCTGTTTGTCAA...ACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCAATGAGCTGCCTAGTCTCACCAGCCCATTATACAATTTTCAAAAATAAAGAAAAAGTACTCAGTCAGTaGGGCAGTGTTGCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: SMSCLVSPAHYTIFKNKEKVLSQ*GSVAQA
Trigger: TGCCTGAGCAACACTGCCCCACTGACTGAGTACTTT...TTCTTTATTTTTGAAAATTGTATAATGGGCTGGTGAGACTAGGCAGCTCATTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR GCA 90 bp AACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCTTGGTTTACTGTAGTTGCAATGGTGTCTaGTTTGCTAAAATGGCAACT +
Preference number: 4 (lower is better)
Translates to: NSKELEDNIKFAGGLVYCSCNGV*FAKMAT
Trigger: AGTTGCCATTTTAGCAAAGCAGACACCATTGCAACT...ACAGTAAACCAAGCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp GGGAGTGACTCAATCGTGCATAATTACTTTCTGCTGACATTAGGGAATTGTTGTAGTTGCAATGGTGTCTaGTTTGCTAAAATGGCAACT +
Preference number: 4 (lower is better)
Translates to: GSDSIVHNYFLLTLGNCCSCNGV*FAKMAT
Trigger: AGTTGCCATTTTAGCAAAGCAGACACCATTGCAACT...ACAACAATTCCCTAATGTCAGCAGAAAGTAATTATGCACGATTGAGTCACTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR TCA 90 bp ATACTAACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAGATTATATACATCAGTaGCCACCATATTTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: ILTSFHNREGGWKILREQDYIHQ*PPYFLQ
Trigger: CTGCAGAAAATATGGTGGTCACTGATGTATATAATC...TTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGTTAGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR GCA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTAAGACAGCTTGGAGAGTaGTTCACACAGGTCAGAAAT +
Preference number: 4 (lower is better)
Translates to: ILREQENRNGFQRQFRKLRQLGE*FTQVRN
Trigger: ATTTCTGACCTGTGTGAAGCACTCTCCAAGCTGTCT...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CCA 90 bp TCAATGAGCTGCCTAGTCTCACCAGCCCATTATACAATTTTCAAAAATAAAGAAAACTTAGCACATTGGTaGGGTCACTGTTCTCACAGA +
Preference number: 4 (lower is better)
Translates to: SMSCLVSPAHYTIFKNKENLAHW*GHCSHR
Trigger: TCTGTGAGAACAGTGACCCCACCAATGTGCTAAGTT...TTCTTTATTTTTGAAAATTGTATAATGGGCTGGTGAGACTAGGCAGCTCATTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS CCA 90 bp CCACGTTGGAGCGTGGTCCCCATCAAGGCTCCGAGCTCCGTCTTCTaGGTCTCCACATCCGGTCGCTCACGGCTGCCCCGGCCTTCCGCC +
Preference number: 5 (lower is better)
Translates to: PRWSVVPIKAPSSVF*VSTSGRSRLPRPSA
Trigger: GGCGGAAGGCCGGGGCAGCCGTGAGCGACCGGATGTGGAGACCCAGAAGACGGAGCTCGGAGCCTTGATGGGGACCACGCTCCAACGTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GAGCAGTGTGGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGCCACTGCGCCCCACGTaGGAGCGTGGTCCCCATCAA +
Preference number: 5 (lower is better)
Translates to: EQCGHQNPKPSSEQPCRWPLRPT*ERGPHQ
Trigger: TTGATGGGGACCACGCTCCAACGTGGGGCGCAGTGG...CCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCCACACTGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AAGAGCTCGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCGCATCTGGTCGCCCATaGGCGTCCTTGGGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: KSSMHSRRATAAFFFFCGASGRP*ASLGSR
Trigger: CCTGGAGCCCAAGGACGCCAATGGGCGACCAGATGC...GCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCGAGCTCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp GGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCGCATCTGGTCGCCCATaGGCGTCCTTGGGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: GLVYCGQTTGVSSVGTRIASGRP*ASLGSR
Trigger: CCTGGAGCCCAAGGACGCCAATGGGCGACCAGATGC...GATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TGGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGGTCAGTGGGGCAGTGTaGCTCAGGCACTGCAGAGCA +
Preference number: 5 (lower is better)
Translates to: WRLGLLWPDYWGEQCGHQVSGAV*LRHCRA
Trigger: TGCTCTGCAGTGCCTGAGCAACACTGCCCCACTGAC...CTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGGCATCTGGTCGCCCATaGGCGTCCTTGGGCTCCAGG +
Preference number: 5 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPASGRP*ASLGSR
Trigger: CCTGGAGCCCAAGGACGCCAATGGGCGACCAGATGC...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTCCACTGCGCCCCACGTaGGAGCGTGGTCCCCATCAA +
Preference number: 5 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFPLRPT*ERGPHQ
Trigger: TTGATGGGGACCACGCTCCAACGTGGGGCGCAGTGG...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTGCAATGCCAGACAGCTaGGAGAGTGCTTCACACAGG +
Preference number: 5 (lower is better)
Translates to: GAALQVGLHGCTMLIAGSAMPDS*ESASHR
Trigger: CCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTGC...AGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TGGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGCTGGCCTTTCACCTTTaGGGCGCTCTCGCTATGGTC +
Preference number: 5 (lower is better)
Translates to: WRLGLLWPDYWGEQCGHQLAFHL*GALAMV
Trigger: GACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAG...CTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS GCA 90 bp TACTTCTTCCACTGCTTGAACCACCGGCTGTCAATAAGATACCACTaGGCCCCACGTTGGAGCGTGGTCCCCATCAAGGCTCCGAGCTCC +
Preference number: 5 (lower is better)
Translates to: YFFHCLNHRLSIRYH*APRWSVVPIKAPSS
Trigger: GGAGCTCGGAGCCTTGATGGGGACCACGCTCCAACGTGGGGCGCAGTGGTATCTTATTGACAGCCGGTGGTTCAAGCAGTGGAAGAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp ATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATCTGGCCTTTCACCTTTaGGGCGCTCTCGCTATGGTC +
Preference number: 5 (lower is better)
Translates to: IQNPVRSSPAGGSSWLHHLAFHL*GALAMV
Trigger: GACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAG...ATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TGGAGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAAGGTAAAGAGCCTCTaGTGCCTCGGCTGGCCTTTC +
Preference number: 5 (lower is better)
Translates to: WRLGLLWPDYWGEQCGHQKVKSL*CLGWPF
Trigger: GAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTT...CTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS GCA 90 bp GCAGTTCCACAGGAGTTCACGAGGCTGAAGGTAAAGAGCCTCTTGTaGCTCGGCTGGCCTTTCACCTTTTGGGCGCTCTCGCTATGGTCA +
Preference number: 5 (lower is better)
Translates to: AVPQEFTRLKVKSLL*LGWPFTFWALSLWS
Trigger: TGACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTTCAGCCTCGTGAACTCCTGTGGAACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp GGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGTCCACTTTGCAGTGCTaGACAAACAGGCCATGCTCC +
Preference number: 5 (lower is better)
Translates to: GHQNPKPSSEQPCRWVFMSTLQC*TNRPCS
Trigger: GGAGCATGGCCTGTTTGTCAAGCACTGCAAAGTGGA...CATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp CGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACATCCACTTTGCAGTGCTaGACAAACAGGCCATGCTCC +
Preference number: 5 (lower is better)
Translates to: RCTLAGLLPPSSSSAAVTSTLQC*TNRPCS
Trigger: GGAGCATGGCCTGTTTGTCAAGCACTGCAAAGTGGA...TGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp GGGCACCAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGCGTTCTGCAGGGATGTaGAAGAGCTTCCTCATCTCC +
Preference number: 5 (lower is better)
Translates to: GHQNPKPSSEQPCRWVFMRSAGM*KSFLIS
Trigger: GGAGATGAGGAAGCTCTTCAACATCCCTGCAGAACG...CATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTGGTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp CGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACACGTTCTGCAGGGATGTaGAAGAGCTTCCTCATCTCC +
Preference number: 5 (lower is better)
Translates to: RCTLAGLLPPSSSSAAVTRSAGM*KSFLIS
Trigger: GGAGATGAGGAAGCTCTTCAACATCCCTGCAGAACG...TGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp AGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATTTCATCCCCAGAGGGTaGTCTCGGTTGATCTCGGCC +
Preference number: 5 (lower is better)
Translates to: RLGLLWPDYWGEQCGHQNFIPRG*SRLISA
Trigger: GGCCGAGATCAACCGAGACAACCCTCTGGGGATGAA...ATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGCTGGCCTTTCACCTTTaGGGCGCTCTCGCTATGGTC +
Preference number: 5 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPLAFHL*GALAMV
Trigger: GACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAG...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS TCA 90 bp GGCTGGCCTTTCACCTTTTGGGCGCTCTCGCTATGGTCATCTCCCTaGTCGTCCTCACCACTGCCTTCCACTTCGGAAAGCTGCTCTTTT +
Preference number: 5 (lower is better)
Translates to: GWPFTFWALSLWSSP*SSSPLPSTSESCSF
Trigger: AAAAGAGCAGCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATCAGGGAGATGACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS GCA 90 bp GCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACATGCTCAGGTaGTTCTCACAGGCCTGCGGAGAGAAGCACTCAGATTCTTGCTCA +
Preference number: 5 (lower is better)
Translates to: ATAAFFFFCGCDMLR*FSQACGEKHSDSCS
Trigger: TGAGCAAGAATCTGAGTGCTTCTCTCCGCAGGCCTGTGAGAAGCACCTGAGCATGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS-3UTR CAA 90 bp CCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTACTTCTTCCACTGCTaGAACCACCGGCTGTCAATA +
Preference number: 5 (lower is better)
Translates to: PKPSSEQPCRWVFMAAPCYFFHC*NHRLSI
Trigger: TATTGACAGCCGGTGGTTCAAGCAGTGGAAGAAGTA...GCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TGCCTGCTGGTGCTTCTTACAGGTGGGACAGTACCAGGGGTCATGCTCCCCAAGGCATCCTGGATAGTGTaGTCTAGCTTGCTCAACTGC +
Preference number: 5 (lower is better)
Translates to: CLLVLLTGGTVPGVMLPKASWIV*SSLLNC
Trigger: GCAGTTGAGCAAGCTAGACAACACTATCCAGGATGC...CTTGGGGAGCATGACCCCTGGTACTGTCCCACCTGTAAGAAGCACCAGCAGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp TCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGTCAGTGGGGCAGTGTaGCTCAGGCACTGCAGAGCA +
Preference number: 5 (lower is better)
Translates to: SSPLFGIHETHATVHQTPVSGAV*LRHCRA
Trigger: TGCTCTGCAGTGCCTGAGCAACACTGCCCCACTGAC...TGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GCTGATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCACTGGCCTTTCACCTTTaGGGCGCTCTCGCTATGGTC +
Preference number: 5 (lower is better)
Translates to: ADRTTRRRLSSLSGPQRPLAFHL*GALAMV
Trigger: GACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAG...TGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp ATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGAAGGTAAAGAGCCTCTaGTGCCTCGGCTGGCCTTTC +
Preference number: 5 (lower is better)
Translates to: MRHMPLCTKPQPTIELHRKVKSL*CLGWPF
Trigger: GAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTT...CCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS TCA 90 bp GTTCCCCAGGTTTCCAAGTCCACAGAGGCCAGGCTGTATATGAGGTaGTGGGGGCTCCTGGCAATTATACGAAGCAGAGAAGCCAGATCC +
Preference number: 5 (lower is better)
Translates to: VPQVSKSTEARLYMR*WGLLAIIRSREARS
Trigger: GGATCTGGCTTCTCTGCTTCGTATAATTGCCAGGAGCCCCCATCACCTCATATACAGCCTGGCCTCTGTGGACTTGGAAACCTGGGGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS GCA 90 bp CTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACATaGTCAGGTGCTTCTCACAGGCCTCAGATTCTTGCTCATCAAAGT +
Preference number: 5 (lower is better)
Translates to: LAGLLPPSSSSAAVT*SGASHRPQILAHQS
Trigger: ACTTTGATGAGCAAGAATCTGAGGCCTGTGAGAAGCACCTGAGCATGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp AAGGATTGCTCCACAAGTCACAAGTCAACCTCCCAGAGCCAAGTACTACAATCTCCACTGCGCCCCACGTaGGAGCGTGGTCCCCATCAA +
Preference number: 5 (lower is better)
Translates to: KDCSTSHKSTSQSQVLQSPLRPT*ERGPHQ
Trigger: TTGATGGGGACCACGCTCCAACGTGGGGCGCAGTGG...AGATTGTAGTACTTGGCTCTGGGAGGTTGACTTGTGACTTGTGGAGCAATCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp GGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCTCATTGCAGGGTCTGCAATGGTGTCTGCTTaGCTAAAATGGCAACTTAGC +
Preference number: 5 (lower is better)
Translates to: GAALQVGLHGCTMLIAGSAMVSA*LKWQLS
Trigger: GCTAAGTTGCCATTTTAGCAAAGCAGACACCATTGC...AGACCCTGCAATGAGCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GCCTCGAACTCAGAAATCTGCCTGCCTCTTCAAAGGAATAAGGGGAGTGACTCAGTCAGTGGGGCAGTGTaGCTCAGGCACTGCAGAGCA +
Preference number: 5 (lower is better)
Translates to: ASNSEICLPLQRNKGSDSVSGAV*LRHCRA
Trigger: TGCTCTGCAGTGCCTGAGCAACACTGCCCCACTGAC...TGAGTCACTCCCCTTATTCCTTTGAAGAGGCAGGCAGATTTCTGAGTTCGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp AGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCTGGGAGTCTTGCTGTaGGTAGCCAGAAAACTGAGG +
Preference number: 5 (lower is better)
Translates to: RLGLLWPDYWGEQCGHQNLGVLL*VARKLR
Trigger: CCTCAGTTTTCTGGCTACCAACAGCAAGACTCCCAG...ATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTGCAATGCCAGACAGCTaGGAGAGTGCTTCACACAGG +
Preference number: 5 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFAMPDS*ESASHR
Trigger: CCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTGC...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGAAAGGTAAAGAGCCTCTaGTGCCTCGGCTGGCCTTTC +
Preference number: 5 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGKVKSL*CLGWPF
Trigger: GAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTT...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp GGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCAGTGTGGATCGAGAGTaGAGTTTGAGGAGTTTCCCG +
Preference number: 5 (lower is better)
Translates to: GLVYCGQTTGVSSVGTRISVDRE*SLRSFP
Trigger: CGGGAAACTCCTCAAACTCAACTCTCGATCCACACT...GATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp CCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACCATGCACAGGCCTCAGATTCTaGCTCATCAAAGTAAAGGCT +
Preference number: 5 (lower is better)
Translates to: PKPSSEQPCRWVFMAAPCTGLRF*LIKVKA
Trigger: AGCCTTTACTTTGATGAGCAAGAATCTGAGGCCTGT...GCATGGTGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS TCA 90 bp CAAGTGTTCCCCAGGTTTCCAAGTCCACAGAGGCCAGGCTGTATATaGGGTGATGGGGGCTCCTGGCAATTATACGAAGCAGAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: QVFPRFPSPQRPGCI*GDGGSWQLYEAEKP
Trigger: TGGCTTCTCTGCTTCGTATAATTGCCAGGAGCCCCCATCACCTCATATACAGCCTGGCCTCTGTGGACTTGGAAACCTGGGGAACACTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS GCA 90 bp TACGAAGCAGAGAAGCCAGATCCACCCCTGCTGACACCGGAGCTGTaGATCCCAGAGCTGTTAGTGCTATCACCATTTGCAATGAGAGAG +
Preference number: 5 (lower is better)
Translates to: YEAEKPDPPLLTPEL*IPELLVLSPFAMRE
Trigger: CTCTCTCATTGCAAATGGTGATAGCACTAACAGCTCTGGGATGCACAGCTCCGGTGTCAGCAGGGGTGGATCTGGCTTCTCTGCTTCGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp AGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATTTATGCTCCCCGACATaGTACATGTCCCAGCTGTCA +
Preference number: 5 (lower is better)
Translates to: RLGLLWPDYWGEQCGHQNLCSPT*YMSQLS
Trigger: TGACAGCTGGGACATGTACAATGTCGGGGAGCATAA...ATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATCCAAAACTCCACTTTGCAGTGCTaGACAAACAGGCCATGCTCC +
Preference number: 5 (lower is better)
Translates to: VYCGQTTGVSSVGTRIQNSTLQC*TNRPCS
Trigger: GGAGCATGGCCTGTTTGTCAAGCACTGCAAAGTGGA...GTTTTGGATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp ATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTGGCAACTTAGCACATaGGTGGGGTCACTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: MRHMPLCTKPQPTIELHRWQLST*VGSLFS
Trigger: TGAGAACAGTGACCCCACCAATGTGCTAAGTTGCCA...CCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTGGCAACTTAGCACATaGGTGGGGTCACTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: CTKPQPTIELHRFFSHHPWQLST*VGSLFS
Trigger: TGAGAACAGTGACCCCACCAATGTGCTAAGTTGCCA...CGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AGGCTTGGTTTACTGTGGCCAGACTACTGGGGTGAGCAGTGTGGGCACCAGAATGCATCCTGGATAGTGTaGTCTAGCTTGCTCAACTGC +
Preference number: 5 (lower is better)
Translates to: RLGLLWPDYWGEQCGHQNASWIV*SSLLNC
Trigger: GCAGTTGAGCAAGCTAGACAACACTATCCAGGATGC...ATTCTGGTGCCCACACTGCTCACCCCAGTAGTCTGGCCACAGTAAACCAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GCCTCGAACTCAGAAATCTGCCTGCCTCTTCAAAGGAATAAGGGGAGTGACTCATTCATCCCCAGAGGGTaGTCTCGGTTGATCTCGGCC +
Preference number: 5 (lower is better)
Translates to: ASNSEICLPLQRNKGSDSFIPRG*SRLISA
Trigger: GGCCGAGATCAACCGAGACAACCCTCTGGGGATGAA...TGAGTCACTCCCCTTATTCCTTTGAAGAGGCAGGCAGATTTCTGAGTTCGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp CAGAATCCAAAACCCAGTTCGGAGCAGCCCTGCAGGTGGGTCTTCATGGCTGCACATAAACATAAGGCCTaGCTGACCGGTCACAGACAA +
Preference number: 5 (lower is better)
Translates to: QNPKPSSEQPCRWVFMAAHKHKA*LTGHRQ
Trigger: TTGTCTGTGACCGGTCAGCAAGGCCTTATGTTTATG...TGCAGCCATGAAGACCCACCTGCAGGGCTGCTCCGAACTGGGTTTTGGATTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGAGAAGCCAGATCCATTaGACTGCAGGCTCTGCCGGG +
Preference number: 5 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLRSQIH*TAGSAG
Trigger: CCCGGCAGAGCCTGCAGTCAAATGGATCTGGCTTCT...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194959.6
CDS GCA 90 bp TTTGGGCGCTCTCGCTATGGTCATCTCCCTGATCGTCCTCACCACTaGCTTCCACTTCGGAAAGCTGCTCTTTTCCTTCCTCTTGATGAT +
Preference number: 5 (lower is better)
Translates to: FGRSRYGHLPDRPHH*LPLRKAALFLPLDD
Trigger: ATCATCAAGAGGAAGGAAAAGAGCAGCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATCAGGGAGATGACCATAGCGAGAGCGCCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AAGAGCTCGATGCACTCTCGCAGGGCTACTGCCGCCTTCTTCTTCTTCTGCGGCGTGTTGCTCATGTATTaGTTCCAAAGCCGTGTTTCA +
Preference number: 5 (lower is better)
Translates to: KSSMHSRRATAAFFFFCGVLLMY*FQSRVS
Trigger: TGAAACACGGCTTTGGAACAAATACATGAGCAACAC...GCCGCAGAAGAAGAAGAAGGCGGCAGTAGCCCTGCGAGAGTGCATCGAGCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp CTCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTTTTCCCAGGCTTCCTTaGCTACCACCGCATCTGGTC +
Preference number: 5 (lower is better)
Translates to: LIAGSSSPLFGIHETHATFPRLP*LPPHLV
Trigger: GACCAGATGCGGTGGTAGCAAAGGAAGCCTGGGAAA...AGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TCATTGCAGGGTCTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGGCAATGCCAGACAGCTaGGAGAGTGCTTCACACAGG +
Preference number: 5 (lower is better)
Translates to: SLQGLPLHSLESMRHMPLAMPDS*ESASHR
Trigger: CCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTGC...CAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAGACCCTGCAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp ACCTCCCAGAGCCAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTGGCCTTTCACCTTTaGGGCGCTCTCGCTATGGTC +
Preference number: 5 (lower is better)
Translates to: TSQSQVLQSNSSIYLLTSLAFHL*GALAMV
Trigger: GACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAG...GGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTGGCTCTGGGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGAAGTGTGGATCGAGAGTaGAGTTTGAGGAGTTTCCCG +
Preference number: 5 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGSVDRE*SLRSFP
Trigger: CGGGAAACTCCTCAAACTCAACTCTCGATCCACACT...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp CTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCTTATGCTCCCCGACATaGTACATGTCCCAGCTGTCA +
Preference number: 5 (lower is better)
Translates to: LPLHSLESMRHMPLCTKPLCSPT*YMSQLS
Trigger: TGACAGCTGGGACATGTACAATGTCGGGGAGCATAA...GGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp CAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTCCTCAGCACCTTTCCCAGGCTTCCTTaGCTACCACCGCATCTGGTC +
Preference number: 5 (lower is better)
Translates to: QVLQSNSSIYLLTSLLSTFPRLP*LPPHLV
Trigger: GACCAGATGCGGTGGTAGCAAAGGAAGCCTGGGAAA...GGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp CTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCAGTGTGGATCGAGAGTaGAGTTTGAGGAGTTTCCCG +
Preference number: 5 (lower is better)
Translates to: LPLHSLESMRHMPLCTKPSVDRE*SLRSFP
Trigger: CGGGAAACTCCTCAAACTCAACTCTCGATCCACACT...GGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGACAAGTCAAACTTCTTaGTTGCCTGCTGGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: DRTTRRRLSSLSGPQRPGTSQTS*LPAGAS
Trigger: AGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGT...CCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp AACAGAACTGAGCCTGTGCTGTCCTGGCTGAAGCCAAGTTCCCTGACAGCAATGGCAATGGTGTCTGCTTaGCTAAAATGGCAACTTAGC +
Preference number: 5 (lower is better)
Translates to: NRTEPVLSWLKPSSLTAMAMVSA*LKWQLS
Trigger: GCTAAGTTGCCATTTTAGCAAAGCAGACACCATTGC...CATTGCTGTCAGGGAACTTGGCTTCAGCCAGGACAGCACAGGCTCAGTTCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp AAGGATTGCTCCACAAGTCACAAGTCAACCTCCCAGAGCCAAGTACTACAATCTAAGGTAAAGAGCCTCTaGTGCCTCGGCTGGCCTTTC +
Preference number: 5 (lower is better)
Translates to: KDCSTSHKSTSQSQVLQSKVKSL*CLGWPF
Trigger: GAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTT...AGATTGTAGTACTTGGCTCTGGGAGGTTGACTTGTGACTTGTGGAGCAATCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGAACAGGCCTCAGATTCTaGCTCATCAAAGTAAAGGCT +
Preference number: 5 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGTGLRF*LIKVKA
Trigger: AGCCTTTACTTTGATGAGCAAGAATCTGAGGCCTGT...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp ATAGAACAACACGTAGGCGGCTTTCGTCACTATCTGGTCCTCAGAGGCCAGGGAACAAGTCAAACTTCTTaGTTGCCTGCTGGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: IEQHVGGFRHYLVLRGQGTSQTS*LPAGAS
Trigger: AGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGT...TCCCTGGCCTCTGAGGACCAGATAGTGACGAAAGCCGCCTACGTGTTGTTCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp CTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCATAAACATAAGGCCTaGCTGACCGGTCACAGACAA +
Preference number: 5 (lower is better)
Translates to: LPLHSLESMRHMPLCTKPHKHKA*LTGHRQ
Trigger: TTGTCTGTGACCGGTCAGCAAGGCCTTATGTTTATG...GGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS TCA 90 bp GTAATACCATTTCCCGTTCAGTCTGTTCTTCGCATATGCAGTGTCTaGCTGGGAACTCCACCACGGTGTCAAGTTTATCCCGCCAGTATC +
Preference number: 5 (lower is better)
Translates to: VIPFPVQSVLRICSV*LGTPPRCQVYPASI
Trigger: GATACTGGCGGGATAAACTTGACACCGTGGTGGAGTTCCCAGTCAGACACTGCATATGCGAAGAACAGACTGAACGGGAAATGGTATTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS-3UTR CAA 90 bp CAAGTACTACAATCTAACTCCAGCATCTATCTTCTCACCTCCCTCCTCAGCACCTGGCAACTTAGCACATaGGTGGGGTCACTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: QVLQSNSSIYLLTSLLSTWQLST*VGSLFS
Trigger: TGAGAACAGTGACCCCACCAATGTGCTAAGTTGCCA...GGTGCTGAGGAGGGAGGTGAGAAGATAGATGCTGGAGTTAGATTGTAGTACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp TTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGGCAATGGTGTCTGCTTaGCTAAAATGGCAACTTAGC +
Preference number: 5 (lower is better)
Translates to: LESMRHMPLCTKPQPTIEAMVSA*LKWQLS
Trigger: GCTAAGTTGCCATTTTAGCAAAGCAGACACCATTGC...CTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAGTGCAGTGCTTGATTTaGACTGCAGGCTCTGCCGGG +
Preference number: 5 (lower is better)
Translates to: SPQLSSTGFSLTTRLKEKVQCLI*TAGSAG
Trigger: CCCGGCAGAGCCTGCAGTCAAAATCAAGCACTGCAC...TTTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035237.12
CDS-3UTR CAA 90 bp AGACACATGCCACTGTGCACCAAACCCCAGCCCACAATTGAGCTCCACAGGTTTGCCTCATACTCATCTTaGAGAAAGTACTCAGTCAGT +
Preference number: 5 (lower is better)
Translates to: RHMPLCTKPQPTIELHRFASYSS*RKYSVS
Trigger: ACTGACTGAGTACTTTCTCAAAGATGAGTATGAGGC...AAACCTGTGGAGCTCAATTGTGGGCTGGGGTTTGGTGCACAGTGGCATGTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp CTTCCTCTCCACTCTTTGGAATCCATGAGACACATGCCACTGTGCACCAAACCCACAAGTCAAACTTCTTaGTTGCCTGCTGGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: LPLHSLESMRHMPLCTKPTSQTS*LPAGAS
Trigger: AGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGT...GGGTTTGGTGCACAGTGGCATGTGTCTCATGGATTCCAAAGAGTGGAGAGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GTCACAGAGGCCACATCAGTTGGTGTCCATGTTGTAAGCCTCCTCATCCCCCATGAAGCACTCAGATTCTaGCTCATCAAAGTAAAGGCT +
Preference number: 5 (lower is better)
Translates to: VTEATSVGVHVVSLLIPHEALRF*LIKVKA
Trigger: AGCCTTTACTTTGATGAGCAAGAATCTGAGTGCTTC...ATGGGGGATGAGGAGGCTTACAACATGGACACCAACTGATGTGGCCTCTGTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS-3UTR CAA 90 bp AAGGGAGAGCTAATGAAAGTTCCACATAGAATCACTTTATCAAGGGCAGTGGGGCGTTCTGCAGGGATGTaGAAGAGCTTCCTCATCTCC +
Preference number: 5 (lower is better)
Translates to: KGELMKVPHRITLSRAVGRSAGM*KSFLIS
Trigger: GGAGATGAGGAAGCTCTTCAACATCCCTGCAGAACG...CCCCACTGCCCTTGATAAAGTGATTCTATGTGGAACTTTCATTAGCTCTCCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp CAAGGATTCTCAATGAGCTGCCTAGTCTCACCAGCCCATTATACAATTTTCAAAGTGCAGTGCTTGATTTaGACTGCAGGCTCTGCCGGG +
Preference number: 5 (lower is better)
Translates to: QGFSMSCLVSPAHYTIFKVQCLI*TAGSAG
Trigger: CCCGGCAGAGCCTGCAGTCAAAATCAAGCACTGCAC...TTTGAAAATTGTATAATGGGCTGGTGAGACTAGGCAGCTCATTGAGAATCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp CCCATCTCAATGAACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCAGAGGGTTGTCTCGGTaGATCTCGGCCTCATACTCA +
Preference number: 5 (lower is better)
Translates to: PISMNSKELEDNIKFAGGRGLSR*ISASYS
Trigger: TGAGTATGAGGCCGAGATCAACCGAGACAACCCTCT...GCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTTCATTGAGATGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp ATACTAACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAATTCATCCCCAGAGGGTaGTCTCGGTTGATCTCGGCC +
Preference number: 5 (lower is better)
Translates to: ILTSFHNREGGWKILREQFIPRG*SRLISA
Trigger: GGCCGAGATCAACCGAGACAACCCTCTGGGGATGAA...TTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGTTAGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp CCCATCTCAATGAACAGCAAAGAACTAGAGGACAACATCAAATTTGCTGGAGGCCTGGGAGTCTTGCTGTaGGTAGCCAGAAAACTGAGG +
Preference number: 5 (lower is better)
Translates to: PISMNSKELEDNIKFAGGLGVLL*VARKLR
Trigger: CCTCAGTTTTCTGGCTACCAACAGCAAGACTCCCAG...GCCTCCAGCAAATTTGATGTTGTCCTCTAGTTCTTTGCTGTTCATTGAGATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAAAGGTAAAGAGCCTCTaGTGCCTCGGCTGGCCTTTC +
Preference number: 5 (lower is better)
Translates to: SPQLSSTGFSLTTRLKEKKVKSL*CLGWPF
Trigger: GAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTT...TTTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCT
48% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GTATCTGTTATAGGAGAAACGCTTGAGGTGAACCACCAGGATCTTGGGCAAAGATACTTCTTCCACTGCTaGAACCACCGGCTGTCAATA +
Preference number: 5 (lower is better)
Translates to: VSVIGETLEVNHQDLGQRYFFHC*NHRLSI
Trigger: TATTGACAGCCGGTGGTTCAAGCAGTGGAAGAAGTA...TCTTTGCCCAAGATCCTGGTGGTTCACCTCAAGCGTTTCTCCTATAACAGATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp GCCTCGAACTCAGAAATCTGCCTGCCTCTTCAAAGGAATAAGGGGAGTGACTCAGCCTCATACTCATCTTaGAGAAAGTACTCAGTCAGT +
Preference number: 5 (lower is better)
Translates to: ASNSEICLPLQRNKGSDSASYSS*RKYSVS
Trigger: ACTGACTGAGTACTTTCTCAAAGATGAGTATGAGGC...TGAGTCACTCCCCTTATTCCTTTGAAGAGGCAGGCAGATTTCTGAGTTCGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp TGCCTCTTCAAAGGAATAAGGGGAGTGACTCAATCGTGCATAATTACTTTCTGCAGAGGGTTGTCTCGGTaGATCTCGGCCTCATACTCA +
Preference number: 5 (lower is better)
Translates to: CLFKGIRGVTQSCIITFCRGLSR*ISASYS
Trigger: TGAGTATGAGGCCGAGATCAACCGAGACAACCCTCT...GCAGAAAGTAATTATGCACGATTGAGTCACTCCCCTTATTCCTTTGAAGAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp GGGAGTGACTCAATCGTGCATAATTACTTTCTGCTGACATTAGGGAATTGTTGTGCAATGCCAGACAGCTaGGAGAGTGCTTCACACAGG +
Preference number: 5 (lower is better)
Translates to: GSDSIVHNYFLLTLGNCCAMPDS*ESASHR
Trigger: CCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTGC...ACAACAATTCCCTAATGTCAGCAGAAAGTAATTATGCACGATTGAGTCACTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS CCA 90 bp CTCATCTCCTTCTCAATAGTTGCAATGGTGTCTGCTTTGCTAAAATaGCAACTTAGCACATTGGTGGGGTCACTGTTCTCACAGAGCTTC +
Preference number: 5 (lower is better)
Translates to: LISFSIVAMVSALLK*QLSTLVGSLFSQSF
Trigger: GAAGCTCTGTGAGAACAGTGACCCCACCAATGTGCTAAGTTGCCATTTTAGCAAAGCAGACACCATTGCAACTATTGAGAAGGAGATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp CAAGGATTCTCAATGAGCTGCCTAGTCTCACCAGCCCATTATACAATTTTCAAACTGGGAGTCTTGCTGTaGGTAGCCAGAAAACTGAGG +
Preference number: 5 (lower is better)
Translates to: QGFSMSCLVSPAHYTIFKLGVLL*VARKLR
Trigger: CCTCAGTTTTCTGGCTACCAACAGCAAGACTCCCAG...TTTGAAAATTGTATAATGGGCTGGTGAGACTAGGCAGCTCATTGAGAATCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp GACAAAACAGAACTTCTAGGAGTCTGTGAGAAACTGAAAACAATAGCCCAATACTTTCCCAGGCTTCCTTaGCTACCACCGCATCTGGTC +
Preference number: 5 (lower is better)
Translates to: DKTELLGVCEKLKTIAQYFPRLP*LPPHLV
Trigger: GACCAGATGCGGTGGTAGCAAAGGAAGCCTGGGAAA...GTATTGGGCTATTGTTTTCAGTTTCTCACAGACTCCTAGAAGTTCTGTTTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AGCCCACAATTGAGCTCCACAGGTTTTTCTCTCACCACCCGTTTAAAAGAAAAAAGTGTGGATCGAGAGTaGAGTTTGAGGAGTTTCCCG +
Preference number: 5 (lower is better)
Translates to: SPQLSSTGFSLTTRLKEKSVDRE*SLRSFP
Trigger: CGGGAAACTCCTCAAACTCAACTCTCGATCCACACT...TTTTTCTTTTAAACGGGTGGTGAGAGAAAAACCTGTGGAGCTCAATTGTGGGCT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp GGGAGTGACTCAATCGTGCATAATTACTTTCTGCTGACATTAGGGAATTGTTGTTTATGCTCCCCGACATaGTACATGTCCCAGCTGTCA +
Preference number: 5 (lower is better)
Translates to: GSDSIVHNYFLLTLGNCCLCSPT*YMSQLS
Trigger: TGACAGCTGGGACATGTACAATGTCGGGGAGCATAA...ACAACAATTCCCTAATGTCAGCAGAAAGTAATTATGCACGATTGAGTCACTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS-3UTR CAA 90 bp AAGGGAGAGCTAATGAAAGTTCCACATAGAATCACTTTATCAAGGGCAGTGGGGACAGGCCTCAGATTCTaGCTCATCAAAGTAAAGGCT +
Preference number: 5 (lower is better)
Translates to: KGELMKVPHRITLSRAVGTGLRF*LIKVKA
Trigger: AGCCTTTACTTTGATGAGCAAGAATCTGAGGCCTGT...CCCCACTGCCCTTGATAAAGTGATTCTATGTGGAACTTTCATTAGCTCTCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAATGAGAGGGTTGTCTCGGTaGATCTCGGCCTCATACTCA +
Preference number: 5 (lower is better)
Translates to: RIETGFRDSLENYKPISMRGLSR*ISASYS
Trigger: TGAGTATGAGGCCGAGATCAACCGAGACAACCCTCT...CATTGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp ATACTAACTTCATTTCATAACCGGGAAGGCGGCTGGAAAATTCTGAGAGAACAAACAAGTCAAACTTCTTaGTTGCCTGCTGGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: ILTSFHNREGGWKILREQTSQTS*LPAGAS
Trigger: AGAAGCACCAGCAGGCAACAAAGAAGTTTGACTTGT...TTGTTCTCTCAGAATTTTCCAGCCGCCTTCCCGGTTATGAAATGAAGTTAGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTAGCATCCTGGATAGTGTaGTCTAGCTTGCTCAACTGC +
Preference number: 5 (lower is better)
Translates to: ILREQENRNGFQRQFRKLASWIV*SSLLNC
Trigger: GCAGTTGAGCAAGCTAGACAACACTATCCAGGATGC...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp TCTTTCCTTCCTCTTCTCATAAAAGGAGGTAATGTCCTCATCTGGTTTGAGATTGTGTTGCTCATGTATTaGTTCCAAAGCCGTGTTTCA +
Preference number: 5 (lower is better)
Translates to: SFLPLLIKGGNVLIWFEIVLLMY*FQSRVS
Trigger: TGAAACACGGCTTTGGAACAAATACATGAGCAACAC...AATCTCAAACCAGATGAGGACATTACCTCCTTTTATGAGAAGAGGAAGGAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp AAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTATAAGCCCATCTCAGCCTCATACTCATCTTaGAGAAAGTACTCAGTCAGT +
Preference number: 5 (lower is better)
Translates to: KRIETGFRDSLENYKPISASYSS*RKYSVS
Trigger: ACTGACTGAGTACTTTCTCAAAGATGAGTATGAGGC...TGAGATGGGCTTATAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS-3UTR CAA 90 bp ATTCTGAGAGAACAAGAGAATAGAAACGGGTTTCAGAGACAGTTTAGAAAACTAGTGTTGCTCATGTATTaGTTCCAAAGCCGTGTTTCA +
Preference number: 5 (lower is better)
Translates to: ILREQENRNGFQRQFRKLVLLMY*FQSRVS
Trigger: TGAAACACGGCTTTGGAACAAATACATGAGCAACAC...TAGTTTTCTAAACTGTCTCTGAAACCCGTTTCTATTCTCTTGTTCTCTCAGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS CCA 72 bp AGCGTGGTCCCCATCAAGGCTCCGAGCTCCGTCTTCTaGGTCTCCACATCCGGTCGCTCACGGCTGCCCCGG +
Preference number: 6 (lower is better)
Translates to: SVVPIKAPSSVF*VSTSGRSRLPR
Trigger: CCGGGGCAGCCGTGAGCGACCGGATGTGGAGACCCAGAAGACGGAGCTCGGAGCCTTGATGGGGACCACGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CCA 72 bp CACCGGCTGTCAATAAGATACCACTGCGCCCCACGTTaGAGCGTGGTCCCCATCAAGGCTCCGAGCTCCGTC +
Preference number: 6 (lower is better)
Translates to: HRLSIRYHCAPR*SVVPIKAPSSV
Trigger: GACGGAGCTCGGAGCCTTGATGGGGACCACGCTCCAACGTGGGGCGCAGTGGTATCTTATTGACAGCCGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CAA 72 bp CCACCGGCTGTCAATAAGATACCACTGCGCCCCACGTaGGAGCGTGGTCCCCATCAAGGCTCCGAGCTCCGT +
Preference number: 6 (lower is better)
Translates to: PPAVNKIPLRPT*ERGPHQGSELR
Trigger: ACGGAGCTCGGAGCCTTGATGGGGACCACGCTCCAACGTGGGGCGCAGTGGTATCTTATTGACAGCCGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS GCA 72 bp CACTGCTTGAACCACCGGCTGTCAATAAGATACCACTaGGCCCCACGTTGGAGCGTGGTCCCCATCAAGGCT +
Preference number: 6 (lower is better)
Translates to: HCLNHRLSIRYH*APRWSVVPIKA
Trigger: AGCCTTGATGGGGACCACGCTCCAACGTGGGGCGCAGTGGTATCTTATTGACAGCCGGTGGTTCAAGCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS GCA 72 bp CAGGAGTTCACGAGGCTGAAGGTAAAGAGCCTCTTGTaGCTCGGCTGGCCTTTCACCTTTTGGGCGCTCTCG +
Preference number: 6 (lower is better)
Translates to: QEFTRLKVKSLL*LGWPFTFWALS
Trigger: CGAGAGCGCCCAAAAGGTGAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTTCAGCCTCGTGAACTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CAA 72 bp CCACAGGAGTTCACGAGGCTGAAGGTAAAGAGCCTCTaGTGCCTCGGCTGGCCTTTCACCTTTTGGGCGCTC +
Preference number: 6 (lower is better)
Translates to: PQEFTRLKVKSL*CLGWPFTFWAL
Trigger: GAGCGCCCAAAAGGTGAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTTCAGCCTCGTGAACTCCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CAA 90 bp GCTGAAGGTAAAGAGCCTCTTGTGCCTCGGCTGGCCTTTCACCTTTaGGGCGCTCTCGCTATGGTCATCTCCCTGATCGTCCTCACCACT +
Preference number: 6 (lower is better)
Translates to: AEGKEPLVPRLAFHL*GALAMVISLIVLTT
Trigger: AGTGGTGAGGACGATCAGGGAGATGACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CAA 90 bp TCAGCAGTTCCACAGGAGTTCACGAGGCTGAAGGTAAAGAGCCTCTaGTGCCTCGGCTGGCCTTTCACCTTTTGGGCGCTCTCGCTATGG +
Preference number: 6 (lower is better)
Translates to: SAVPQEFTRLKVKSL*CLGWPFTFWALSLW
Trigger: CCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTTCAGCCTCGTGAACTCCTGTGGAACTGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CCA 72 bp AGGGGCAAAACGTCCCACTTGCGTCTTGAACATCCGTaGTGCCACGTGAGTGTCCCTTCCAGACCACATCTG +
Preference number: 6 (lower is better)
Translates to: RGKTSHLRLEHP*CHVSVPSRPHL
Trigger: CAGATGTGGTCTGGAAGGGACACTCACGTGGCACCACGGATGTTCAAGACGCAAGTGGGACGTTTTGCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CCA 72 bp TTGCTACCACCGCATCTGGTCGCCCATTGGCGTCCTTaGGCTCCAGGTAAGGCTTCTTCTTTACGCGGTTCA +
Preference number: 6 (lower is better)
Translates to: LLPPHLVAHWRP*APGKASSLRGS
Trigger: TGAACCGCGTAAAGAAGAAGCCTTACCTGGAGCCCAAGGACGCCAATGGGCGACCAGATGCGGTGGTAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CCA 72 bp ACGAGGCTGAAGGTAAAGAGCCTCTTGTGCCTCGGCTaGCCTTTCACCTTTTGGGCGCTCTCGCTATGGTCA +
Preference number: 6 (lower is better)
Translates to: TRLKVKSLLCLG*PFTFWALSLWS
Trigger: TGACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAGCCGAGGCACAAGAGGCTCTTTACCTTCAGCCTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CAA 72 bp AAAGAGCCTCTTGTGCCTCGGCTGGCCTTTCACCTTTaGGGCGCTCTCGCTATGGTCATCTCCCTGATCGTC +
Preference number: 6 (lower is better)
Translates to: KEPLVPRLAFHL*GALAMVISLIV
Trigger: GACGATCAGGGAGATGACCATAGCGAGAGCGCCCAAAAGGTGAAAGGCCAGCCGAGGCACAAGAGGCTCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS TCA 72 bp TTCACCTTTTGGGCGCTCTCGCTATGGTCATCTCCCTaGTCGTCCTCACCACTGCCTTCCACTTCGGAAAGC +
Preference number: 6 (lower is better)
Translates to: FTFWALSLWSSP*SSSPLPSTSES
Trigger: GCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATCAGGGAGATGACCATAGCGAGAGCGCCCAAAAGGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS GCA 72 bp GAGAAGCCAGATCCACCCCTGCTGACACCGGAGCTGTaGATCCCAGAGCTGTTAGTGCTATCACCATTTGCA +
Preference number: 6 (lower is better)
Translates to: EKPDPPLLTPEL*IPELLVLSPFA
Trigger: TGCAAATGGTGATAGCACTAACAGCTCTGGGATGCACAGCTCCGGTGTCAGCAGGGGTGGATCTGGCTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
CDS GCA 72 bp GGCAAAACGTCCCACTTGCGTCTTGAACATCCGTGGTaGCACGTGAGTGTCCCTTCCAGACCACATCTGCTT +
Preference number: 6 (lower is better)
Translates to: GKTSHLRLEHPW*HVSVPSRPHLL
Trigger: AAGCAGATGTGGTCTGGAAGGGACACTCACGTGGCACCACGGATGTTCAAGACGCAAGTGGGACGTTTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS GCA 72 bp GCCTTCTTCTTCTTCTGCGGCTGTGACATGCTCAGGTaGTTCTCACAGGCCTGCGGAGAGAAGCACTCAGAT +
Preference number: 6 (lower is better)
Translates to: AFFFFCGCDMLR*FSQACGEKHSD
Trigger: ATCTGAGTGCTTCTCTCCGCAGGCCTGTGAGAAGCACCTGAGCATGTCACAGCCGCAGAAGAAGAAGAAGGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS CCA 72 bp AGGCTTCCTTTGCTACCACCGCATCTGGTCGCCCATTaGCGTCCTTGGGCTCCAGGTAAGGCTTCTTCTTTA +
Preference number: 6 (lower is better)
Translates to: RLPLLPPHLVAH*RPWAPGKASSL
Trigger: TAAAGAAGAAGCCTTACCTGGAGCCCAAGGACGCCAATGGGCGACCAGATGCGGTGGTAGCAAAGGAAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS TCA 72 bp CCCAGGTTTCCAAGTCCACAGAGGCCAGGCTGTATATaGGGTGATGGGGGCTCCTGGCAATTATACGAAGCA +
Preference number: 6 (lower is better)
Translates to: PRFPSPQRPGCI*GDGGSWQLYEA
Trigger: TGCTTCGTATAATTGCCAGGAGCCCCCATCACCTCATATACAGCCTGGCCTCTGTGGACTTGGAAACCTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS GCA 72 bp CTACTGCCGCCTTCTTCTTCTTCTGCGGCTGTGACATaGTCAGGTGCTTCTCACAGGCCTCAGATTCTTGCT +
Preference number: 6 (lower is better)
Translates to: LLPPSSSSAAVT*SGASHRPQILA
Trigger: AGCAAGAATCTGAGGCCTGTGAGAAGCACCTGAGCATGTCACAGCCGCAGAAGAAGAAGAAGGCGGCAGTAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS GCA 72 bp TCTCGCTATGGTCATCTCCCTGATCGTCCTCACCACTaGCTTCCACTTCGGAAAGCTGCTCTTTTCCTTCCT +
Preference number: 6 (lower is better)
Translates to: SRYGHLPDRPHH*LPLRKAALFLP
Trigger: AGGAAGGAAAAGAGCAGCTTTCCGAAGTGGAAGGCAGTGGTGAGGACGATCAGGGAGATGACCATAGCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CCA 72 bp CCGTTCAGTCTGTTCTTCGCATATGCAGTGTCTGACTaGGAACTCCACCACGGTGTCAAGTTTATCCCGCCA +
Preference number: 6 (lower is better)
Translates to: PFSLFFAYAVSD*ELHHGVKFIPP
Trigger: TGGCGGGATAAACTTGACACCGTGGTGGAGTTCCCAGTCAGACACTGCATATGCGAAGAACAGACTGAACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS CAA 90 bp GCTCAGGTGCTTCTCACAGGCCTGCGGAGAGAAGCACTCAGATTCTaGCTCATCAAAGTAAAGGCTTCGGGTCTCACTGTCCCAGTCAAT +
Preference number: 6 (lower is better)
Translates to: AQVLLTGLRREALRF*LIKVKASGLTVPVN
Trigger: ATTGACTGGGACAGTGAGACCCGAAGCCTTTACTTTGATGAGCAAGAATCTGAGTGCTTCTCTCCGCAGGCCTGTGAGAAGCACCTGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS TCA 72 bp GTTTCCAAGTCCACAGAGGCCAGGCTGTATATGAGGTaGTGGGGGCTCCTGGCAATTATACGAAGCAGAGAA +
Preference number: 6 (lower is better)
Translates to: VSKSTEARLYMR*WGLLAIIRSRE
Trigger: TTCTCTGCTTCGTATAATTGCCAGGAGCCCCCATCACCTCATATACAGCCTGGCCTCTGTGGACTTGGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CAA 72 bp TCACTGTCCCAGTCAATGGCCAGTGTGGATCGAGAGTaGAGTTTGAGGAGTTTCCCGTCAGTTGCCAGTGAA +
Preference number: 6 (lower is better)
Translates to: SLSQSMASVDRE*SLRSFPSVASE
Trigger: TTCACTGGCAACTGACGGGAAACTCCTCAAACTCAACTCTCGATCCACACTGGCCATTGACTGGGACAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CAA 72 bp CTTCTCACAGGCCTGCGGAGAGAAGCACTCAGATTCTaGCTCATCAAAGTAAAGGCTTCGGGTCTCACTGTC +
Preference number: 6 (lower is better)
Translates to: LLTGLRREALRF*LIKVKASGLTV
Trigger: GACAGTGAGACCCGAAGCCTTTACTTTGATGAGCAAGAATCTGAGTGCTTCTCTCCGCAGGCCTGTGAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193288.6
CDS CAA 90 bp CTTCGGGTCTCACTGTCCCAGTCAATGGCCAGTGTGGATCGAGAGTaGAGTTTGAGGAGTTTCCCGTCAGTTGCCAGTGAATTGATATCA +
Preference number: 6 (lower is better)
Translates to: LRVSLSQSMASVDRE*SLRSFPSVASELIS
Trigger: TGATATCAATTCACTGGCAACTGACGGGAAACTCCTCAAACTCAACTCTCGATCCACACTGGCCATTGACTGGGACAGTGAGACCCGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS TCA 72 bp TTTCCCGTTCAGTCTGTTCTTCGCATATGCAGTGTCTaGCTGGGAACTCCACCACGGTGTCAAGTTTATCCC +
Preference number: 6 (lower is better)
Translates to: FPVQSVLRICSV*LGTPPRCQVYP
Trigger: GGGATAAACTTGACACCGTGGTGGAGTTCCCAGTCAGACACTGCATATGCGAAGAACAGACTGAACGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193288.6
ENSMUST00000195608.2
CDS GCA 72 bp AGTCCGGAGTTGTCAATAGGTCCAGGAAACAGGTTATaGTCCCCGACATTGTACATGTCCCAGCTGTCAAAG +
Preference number: 6 (lower is better)
Translates to: SPELSIGPGNRL*SPTLYMSQLSK
Trigger: CTTTGACAGCTGGGACATGTACAATGTCGGGGAGCATAACCTGTTTCCTGGACCTATTGACAACTCCGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS GCA 72 bp CATATTTTCTGCAGCAATGCCAGACAGCTTGGAGAGTaGTTCACACAGGTCAGAAATGGCCCCCATCAATGG +
Preference number: 6 (lower is better)
Translates to: HIFCSNARQLGE*FTQVRNGPHQW
Trigger: CCATTGATGGGGGCCATTTCTGACCTGTGTGAAGCACTCTCCAAGCTGTCTGGCATTGCTGCAGAAAATATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CAA 72 bp GCAATCTCCCCTTTCATCCCCAGAGGGTTGTCTCGGTaGATCTCGGCCTCATACTCATCTTTGAGAAAGTAC +
Preference number: 6 (lower is better)
Translates to: AISPFIPRGLSR*ISASYSSLRKY
Trigger: GTACTTTCTCAAAGATGAGTATGAGGCCGAGATCAACCGAGACAACCCTCTGGGGATGAAAGGGGAGATTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CAA 90 bp GTCTCACTGTCCCAGTCAATGGCCAGTGTGGATCGAGAGTTGAGTTaGAGGAGTTTCCCGTCAGTTGCCAGTGAATTGATATCAGCAGTT +
Preference number: 6 (lower is better)
Translates to: VSLSQSMASVDRELS*RSFPSVASELISAV
Trigger: AACTGCTGATATCAATTCACTGGCAACTGACGGGAAACTCCTCAAACTCAACTCTCGATCCACACTGGCCATTGACTGGGACAGTGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CAA 90 bp CACAGGCAGTTGAGTTTGAGGAGTTTCCCGTCAGTTGCCAGTGAATaGATATCAGCAGTTCCACAGGAGTTCACGAGGCTGAAGGTAAAG +
Preference number: 6 (lower is better)
Translates to: HRQLSLRSFPSVASE*ISAVPQEFTRLKVK
Trigger: CTTTACCTTCAGCCTCGTGAACTCCTGTGGAACTGCTGATATCAATTCACTGGCAACTGACGGGAAACTCCTCAAACTCAACTGCCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS TCA 72 bp GCAGTTGAGTTTGAGGAGTTTCCCGTCAGTTGCCAGTaGATTGATATCAGCAGTTCCACAGGAGTTCACGAG +
Preference number: 6 (lower is better)
Translates to: AVEFEEFPVSCQ*IDISSSTGVHE
Trigger: CTCGTGAACTCCTGTGGAACTGCTGATATCAATTCACTGGCAACTGACGGGAAACTCCTCAAACTCAACTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000194224.6
CDS CCA 72 bp AGGCCATGCTCCACAACTTTTCTGACAATAGGCTGCTaGCCCTCCACACAGCCATACCAATTCAGCAATTTA +
Preference number: 6 (lower is better)
Translates to: RPCSTTFLTIGC*PSTQPYQFSNL
Trigger: TAAATTGCTGAATTGGTATGGCTGTGTGGAGGGCCAGCAGCCTATTGTCAGAAAAGTTGTGGAGCATGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CAA 72 bp TTGAGTTTGAGGAGTTTCCCGTCAGTTGCCAGTGAATaGATATCAGCAGTTCCACAGGAGTTCACGAGGCTG +
Preference number: 6 (lower is better)
Translates to: LSLRSFPSVASE*ISAVPQEFTRL
Trigger: CAGCCTCGTGAACTCCTGTGGAACTGCTGATATCAATTCACTGGCAACTGACGGGAAACTCCTCAAACTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CAA 72 bp TCCCAGTCAATGGCCAGTGTGGATCGAGAGTTGAGTTaGAGGAGTTTCCCGTCAGTTGCCAGTGAATTGATA +
Preference number: 6 (lower is better)
Translates to: SQSMASVDRELS*RSFPSVASELI
Trigger: TATCAATTCACTGGCAACTGACGGGAAACTCCTCAAACTCAACTCTCGATCCACACTGGCCATTGACTGGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS CAA 90 bp GATCGAGAGTTGAGTTTGAGGAGTTTCCCGTCAGTTGCCAGTGAATaGATATCAGCAGTTCCACAGGAGTTCACGAGGCTGAAGGTAAAG +
Preference number: 6 (lower is better)
Translates to: DRELSLRSFPSVASE*ISAVPQEFTRLKVK
Trigger: CTTTACCTTCAGCCTCGTGAACTCCTGTGGAACTGCTGATATCAATTCACTGGCAACTGACGGGAAACTCCTCAAACTCAACTCTCGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194959.6
ENSMUST00000195608.2
CDS GCA 72 bp GCTCATGTATTTGTTCCAAAGCCGTGTTTCACGTTCTaGAGGGATGTTGAAGAGCTTCCTCATCTCCTTCTC +
Preference number: 6 (lower is better)
Translates to: AHVFVPKPCFTF*RDVEELPHLLL
Trigger: GAGAAGGAGATGAGGAAGCTCTTCAACATCCCTGCAGAACGTGAAACACGGCTTTGGAACAAATACATGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CCA 72 bp CAGTGTAGTGACCAACCCCCATGGCTCCATAGTGATTaGACACAGCAATTAGGTCATAAACATAAGGCCTTG +
Preference number: 6 (lower is better)
Translates to: QCSDQPPWLHSD*TQQLGHKHKAL
Trigger: CAAGGCCTTATGTTTATGACCTAATTGCTGTGTCCAATCACTATGGAGCCATGGGGGTTGGTCACTACACTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS CAA 90 bp ATAGTTGCAATGGTGTCTGCTTTGCTAAAATGGCAACTTAGCACATaGGTGGGGTCACTGTTCTCACAGAGCTTCAGCTCCAGCAAATAC +
Preference number: 6 (lower is better)
Translates to: IVAMVSALLKWQLST*VGSLFSQSFSSSKY
Trigger: GTATTTGCTGGAGCTGAAGCTCTGTGAGAACAGTGACCCCACCAATGTGCTAAGTTGCCATTTTAGCAAAGCAGACACCATTGCAACTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CAA 72 bp GATTGGACACAGCAATTAGGTCATAAACATAAGGCCTaGCTGACCGGTCACAGACAAACTCGGACATGTTCA +
Preference number: 6 (lower is better)
Translates to: DWTQQLGHKHKA*LTGHRQTRTCS
Trigger: TGAACATGTCCGAGTTTGTCTGTGACCGGTCAGCAAGGCCTTATGTTTATGACCTAATTGCTGTGTCCAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035237.12
ENSMUST00000194959.6
CDS CAA 90 bp AAGAGCTTCCTCATCTCCTTCTCAATAGTTGCAATGGTGTCTGCTTaGCTAAAATGGCAACTTAGCACATTGGTGGGGTCACTGTTCTCA +
Preference number: 6 (lower is better)
Translates to: KSFLISFSIVAMVSA*LKWQLSTLVGSLFS
Trigger: TGAGAACAGTGACCCCACCAATGTGCTAAGTTGCCATTTTAGCAAAGCAGACACCATTGCAACTATTGAGAAGGAGATGAGGAAGCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS CCA 72 bp TTCTCAATAGTTGCAATGGTGTCTGCTTTGCTAAAATaGCAACTTAGCACATTGGTGGGGTCACTGTTCTCA +
Preference number: 6 (lower is better)
Translates to: FSIVAMVSALLK*QLSTLVGSLFS
Trigger: TGAGAACAGTGACCCCACCAATGTGCTAAGTTGCCATTTTAGCAAAGCAGACACCATTGCAACTATTGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000035237.12
ENSMUST00000194224.6
ENSMUST00000194959.6
CDS TCA 72 bp TGCAGACCTCATACACAAAAATGTCATCTCGAGGCGTaGTGTGGCTTAAACCTTCATCCATTTGGAAAATTT +
Preference number: 6 (lower is better)
Translates to: CRPHTQKCHLEA*CGLNLHPFGKF
Trigger: AAATTTTCCAAATGGATGAAGGTTTAAGCCACATCACGCCTCGAGATGACATTTTTGTGTATGAGGTCTGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000035237.12
ENSMUST00000193288.6
ENSMUST00000194224.6
ENSMUST00000194959.6