Pregenerated sensors for USP39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056305Ensembl transcript IDs: ENSMUST00000070345.5, ENSMUST00000206262.2
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGTACGACAGCCTGAAGCATCTCATGAGGAGAGACATGCGCCTTaGAGTTTCGGGGGTTCCAGAGCTTTCTCATCAGCTCTCCAAAAC | + |
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Preference number: 1 (lower is better) Translates to: KVRQPEASHEERHAP*SFGGSRAFSSALQN Trigger: GTTTTGGAGAGCTGATGAGAAAGCTCTGGAACCCCCGAAACTTCAAGGCGCATGTCTCTCCTCATGAGATGCTTCAGGCTGTCGTACTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR CCA 90 bp | CGTTGGCTTTTATGTTGTTCAGTCCCACGATCCCTGGCAGGTAAGTaGTGCCATCATATGCCCGGGACAATTTGGCTTGCTTATCCAAGT | + |
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Preference number: 1 (lower is better) Translates to: RWLLCCSVPRSLAGK*CHHMPGTIWLAYPS Trigger: ACTTGGATAAGCAAGCCAAATTGTCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGACTGAACAACATAAAAGCCAACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR GCA 90 bp | TGGCTTTTATGTTGTTCAGTCCCACGATCCCTGGCAGGTAAGTGGTaGCATCATATGCCCGGGACAATTTGGCTTGCTTATCCAAGTTTG | + |
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Preference number: 1 (lower is better) Translates to: WLLCCSVPRSLAGKW*HHMPGTIWLAYPSL Trigger: CAAACTTGGATAAGCAAGCCAAATTGTCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGACTGAACAACATAAAAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR CCA 90 bp | ATTTGCATAGTCGTTGGCTTTTATGTTGTTCAGTCCCACGATCCCTaGCAGGTAAGTGGTGCCATCATATGCCCGGGACAATTTGGCTTG | + |
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Preference number: 1 (lower is better) Translates to: ICIVVGFYVVQSHDP*QVSGAIICPGQFGL Trigger: CAAGCCAAATTGTCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGACTGAACAACATAAAAGCCAACGACTATGCAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR GCA 90 bp | TCTCCAGACCTGACGTTTCTACCGAACTGTCTGTTCTTTGATACTTaGAGCAATTCAAATAAGGCATCCATCTGTAAGAGTTCTGCCTGC | + |
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Preference number: 1 (lower is better) Translates to: SPDLTFLPNCLFFDT*SNSNKASICKSSAC Trigger: GCAGGCAGAACTCTTACAGATGGATGCCTTATTTGAATTGCTGCAAGTATCAAAGAACAGACAGTTCGGTAGAAACGTCAGGTCTGGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| 3UTR-3UTR TCA 90 bp | GGAAAGTCTTCTTGCTGCAAAGTACGACAGCCTGAAGCATCTCATGAGGAGAGAGAACCAACAAGAACATaGTGTCCCCCGGAGGACGCT | + |
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Preference number: 2 (lower is better) Translates to: GKSSCCKVRQPEASHEEREPTRT*CPPEDA Trigger: AGCGTCCTCCGGGGGACATCATGTTCTTGTTGGTTC...TCTCTCCTCATGAGATGCTTCAGGCTGTCGTACTTTGCAGCAAGAAGACTTTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR-3UTR TCA 90 bp | GAGACATGCGCCTTGAAGTTTCGGGGGTTCCAGAGCTTTCTCATCAGCTCTCCACCAGCGAGGAATCAATaGTTTCATAGTTGTCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: ETCALKFRGFQSFLISSPPARNQ*FHSCQE Trigger: TTCCTGACAACTATGAAATCATTGATTCCTCGCTGG...TGGAGAGCTGATGAGAAAGCTCTGGAACCCCCGAAACTTCAAGGCGCATGTCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR CAA 90 bp | CCCTGGCAGGTAAGTGGTGCCATCATATGCCCGGGACAATTTGGCTaGCTTATCCAAGTTTGCAATTTGCTGCTTTGTGAAAGTAGGCTT | + |
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Preference number: 2 (lower is better) Translates to: PWQVSGAIICPGQFG*LIQVCNLLLCESRL Trigger: AAGCCTACTTTCACAAAGCAGCAAATTGCAAACTTGGATAAGCAAGCCAAATTGTCCCGGGCATATGATGGCACCACTTACCTGCCAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAAGGCTGCTGCTGACTTCACGTTTACTCCTAGGGTCTCCAGACCTGACGTTGAACTGTCTGTTCTTTaGTACTTGCAGCAATTCAAA | + |
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Preference number: 2 (lower is better) Translates to: QKAAADFTFTPRVSRPDVELSVL*YLQQFK Trigger: TTTGAATTGCTGCAAGTATCAAAGAACAGACAGTTC...AACGTCAGGTCTGGAGACCCTAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| 3UTR-3UTR TCA 90 bp | TATATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACAGAAAGCCACTACCTATaGCAGAAGGCTGCTGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: YMKQQPGLKTGGYLIHRTESHYL*QKAAAD Trigger: GTCAGCAGCAGCCTTCTGTCATAGGTAGTGGCTTTC...TGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| 3UTR TCA 72 bp | CAGCCTGAAGCATCTCATGAGGAGAGACATGCGCCTTaGAGTTTCGGGGGTTCCAGAGCTTTCTCATCAGCT | + |
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Preference number: 3 (lower is better) Translates to: QPEASHEERHAP*SFGGSRAFSSA Trigger: AGCTGATGAGAAAGCTCTGGAACCCCCGAAACTTCAAGGCGCATGTCTCTCCTCATGAGATGCTTCAGGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR GCA 72 bp | TCCCACGATCCCTGGCAGGTAAGTGGTGCCATCATATaGCCGGGACAATTTGGCTTGCTTATCCAAGTTTGC | + |
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Preference number: 3 (lower is better) Translates to: SHDPWQVSGAII*PGQFGLLIQVC Trigger: GCAAACTTGGATAAGCAAGCCAAATTGTCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR CCA 72 bp | GTCGTTGGCTTTTATGTTGTTCAGTCCCACGATCCCTaGCAGGTAAGTGGTGCCATCATATGCCCGGGACAA | + |
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Preference number: 3 (lower is better) Translates to: VVGFYVVQSHDP*QVSGAIICPGQ Trigger: TTGTCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGACTGAACAACATAAAAGCCAACGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR-3UTR CAA 90 bp | CATCAGCTCTCCAAAACGCTGAACCAACAAGAACATGATGTCCCCCGGAGGACGTCGTTGGCTTTTATGTaGTTCAGTCCCACGATCCCT | + |
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Preference number: 3 (lower is better) Translates to: HQLSKTLNQQEHDVPRRTSLAFM*FSPTIP Trigger: AGGGATCGTGGGACTGAACAACATAAAAGCCAACGA...CGTCCTCCGGGGGACATCATGTTCTTGTTGGTTCAGCGTTTTGGAGAGCTGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR GCA 72 bp | TGTTGTTCAGTCCCACGATCCCTGGCAGGTAAGTGGTaGCATCATATGCCCGGGACAATTTGGCTTGCTTAT | + |
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Preference number: 3 (lower is better) Translates to: CCSVPRSLAGKW*HHMPGTIWLAY Trigger: ATAAGCAAGCCAAATTGTCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGACTGAACAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR CCA 72 bp | TTATGTTGTTCAGTCCCACGATCCCTGGCAGGTAAGTaGTGCCATCATATGCCCGGGACAATTTGGCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: LCCSVPRSLAGK*CHHMPGTIWLA Trigger: AGCAAGCCAAATTGTCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGACTGAACAACATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR-3UTR CAA 90 bp | TACGACAGCCTGAAGCATCTCATGAGGAGAGACATGCGCCTTGAAGTTTCGGGGCCGGGACAATTTGGCTaGCTTATCCAAGTTTGCAAT | + |
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Preference number: 3 (lower is better) Translates to: YDSLKHLMRRDMRLEVSGPGQFG*LIQVCN Trigger: ATTGCAAACTTGGATAAGCAAGCCAAATTGTCCCGG...CCCCGAAACTTCAAGGCGCATGTCTCTCCTCATGAGATGCTTCAGGCTGTCGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| 3UTR-3UTR CAA 90 bp | GCCTCAATGGGGTATATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTACTTCAGCCACAGCCCTaGGGAATAAAAACCCAACAA | + |
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Preference number: 3 (lower is better) Translates to: ASMGYMKQQPGLKTGGYLLQPQP*GIKTQQ Trigger: TTGTTGGGTTTTTATTCCCAAGGGCTGTGGCTGAAG...TAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATATACCCCATTGAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| 3UTR GCA 72 bp | CTGACGTTTCTACCGAACTGTCTGTTCTTTGATACTTaGAGCAATTCAAATAAGGCATCCATCTGTAAGAGT | + |
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Preference number: 3 (lower is better) Translates to: LTFLPNCLFFDT*SNSNKASICKS Trigger: ACTCTTACAGATGGATGCCTTATTTGAATTGCTGCAAGTATCAAAGAACAGACAGTTCGGTAGAAACGTCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | TGCTGCCGGAGACAGCGCAGAACATCAGGGCAGACAGGCTCCTTCATGGTGATGTTTAAGCCCCGGCCTTaGAAGTACTTGCCACACACC | + |
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Preference number: 4 (lower is better) Translates to: CCRRQRRTSGQTGSFMVMFKPRP*KYLPHT Trigger: GGTGTGTGGCAAGTACTTTCAAGGCCGGGGCTTAAA...CATCACCATGAAGGAGCCTGTCTGCCCTGATGTTCTGCGCTGTCTCCGGCAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | AGGGCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTCACGCTTCCCGCGGGTaGAACCATGGGACTGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: RADRLLHGDAARIHKNWTHASRG*NHGTAA Trigger: AGCGGCAGTCCCATGGTTCCACCCGCGGGAAGCGTG...AGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGCCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | CAGAAGGCTGCTGCTGACTTCACGTTTACTCCTAGGGTCTCCAGACCTGACGTTACGGAGGCAGCTTGGTaGGCTGGAAGCGTTTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: QKAAADFTFTPRVSRPDVTEAAW*AGSVSG Trigger: TCCTGAAACGCTTCCAGCTCACCAAGCTGCCTCCGT...AACGTCAGGTCTGGAGACCCTAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | GCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGTCCAAGTACGGGCAGTaGCGACTCCTCCGGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: ADRLLHGDAARIHKNWTGSKYGQ*RLLRSS Trigger: TGAAGACCGGAGGAGTCGTCACTGCCCGTACTTGGA...CCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | GTTGTTCAGTCCCACGATCCCTGGCAGGTAAGTGGTGCCATCATATGCCCGGGAGCGTATGCGTTGATGTaGGAGAGAGAAATGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: VVQSHDPWQVSGAIICPGAYALM*EREMEQ Trigger: CTGCTCCATTTCTCTCTCGCACATCAACGCATACGC...TCCCGGGCATATGATGGCACCACTTACCTGCCAGGGATCGTGGGACTGAACAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| CDS-3UTR TCA 90 bp | GCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGGAACCAACAAGAACATaGTGTCCCCCGGAGGACGCT | + |
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Preference number: 4 (lower is better) Translates to: ADRLLHGDAARIHKNWTGEPTRT*CPPEDA Trigger: AGCGTCCTCCGGGGGACATCATGTTCTTGTTGGTTC...CCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | GCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGCCAGCGTCAGGTACATaGACGTGGACTCTACCATCG | + |
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Preference number: 4 (lower is better) Translates to: ADRLLHGDAARIHKNWTGPASGT*TWTLPS Trigger: CGATGGTAGAGTCCACGTTCATGTACCTGACGCTGG...CCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | CATCCATCTGTAAGAGTTCTGCCTGCTGATGCTGAAAGGGAAGAGTGTCGACCAACTTGGCCAGGATGTTaGAGAGAGGCACCTGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: HPSVRVLPADAEREECRPTWPGC*REAPGG Trigger: TCCCCCAGGTGCCTCTCTTCAACATCCTGGCCAAGT...TGGTCGACACTCTTCCCTTTCAGCATCAGCAGGCAGAACTCTTACAGATGGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | CAGAAGGCTGCTGCTGACTTCACGTTTACTCCTAGGGTCTCCAGACCTGACGTTGGCCTTGAAAGTACTTaGCACACACCAGACAGGCGT | + |
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Preference number: 4 (lower is better) Translates to: QKAAADFTFTPRVSRPDVGLEST*HTPDRR Trigger: ACGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGGCC...AACGTCAGGTCTGGAGACCCTAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | GCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGAGCCCTCAGAGGGCTTaGCATCATGCACGATGTTGG | + |
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Preference number: 4 (lower is better) Translates to: ADRLLHGDAARIHKNWTGSPQRA*HHARCW Trigger: CCAACATCGTGCATGATGGCAAGCCCTCTGAGGGCT...CCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | TGCTGCCGGAGACAGCGCAGAACATCAGGGCAGACAGGCTCCTTCATGGTGATGTCTACCATCGTCTCTTaGTACTCATCATTGTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: CCRRQRRTSGQTGSFMVMSTIVS*YSSLWS Trigger: GCTCCACAATGATGAGTACCAAGAGACGATGGTAGA...CATCACCATGAAGGAGCCTGTCTGCCCTGATGTTCTGCGCTGTCTCCGGCAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | TGCTGCCGGAGACAGCGCAGAACATCAGGGCAGACAGGCTCCTTCATGGTGATGCCAGCGAGGAATCAATaGTTTCATAGTTGTCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: CCRRQRRTSGQTGSFMVMPARNQ*FHSCQE Trigger: TTCCTGACAACTATGAAATCATTGATTCCTCGCTGG...CATCACCATGAAGGAGCCTGTCTGCCCTGATGTTCTGCGCTGTCTCCGGCAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | AGGAAAGCCACTACCTATGACAGAAGGCTGCTGCTGACTTCACGTTTACTCCTATCCCTGGCAGGTAAGTaGTGCCATCATATGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: RKATTYDRRLLLTSRLLLSLAGK*CHHMPG Trigger: CCCGGGCATATGATGGCACCACTTACCTGCCAGGGA...TAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTGTCATAGGTAGTGGCTTTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | TCTCCAGACCTGACGTTTCTACCGAACTGTCTGTTCTTTGATACTTGCAGCAATTATAGAGCGGGGCCGTaGGAAGGTCCAGCGTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SPDLTFLPNCLFFDTCSNYRAGP*EGPASG Trigger: ACCTGACGCTGGACCTTCCCACGGCCCCGCTCTATA...ATTGCTGCAAGTATCAAAGAACAGACAGTTCGGTAGAAACGTCAGGTCTGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | AAACTGGACTGGGGCAGGAATCTTTCAGTCAGTCTGTGTTCAGCGACAGCTTCAGCACGATGTTGGCGATaGGATCATAGGTGGTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: KLDWGRNLSVSLCSATASARCWR*DHRWCS Trigger: AGAACACCACCTATGATCTCATCGCCAACATCGTGC...TGAAGCTGTCGCTGAACACAGACTGACTGAAAGATTCCTGCCCCAGTCCAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | TTGATACTTGCAGCAATTCAAATAAGGCATCCATCTGTAAGAGTTCTGCCTGCTCACTCGGCCATTCTTTaGTCGCACCTCCCGCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: LILAAIQIRHPSVRVLPAHSAIL*SHLPLG Trigger: CCCGAGCGGGAGGTGCGAGCAAAGAATGGCCGAGTG...AGCAGGCAGAACTCTTACAGATGGATGCCTTATTTGAATTGCTGCAAGTATCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | ATCAGGGCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGGCGTATGCGTTGATGTaGGAGAGAGAAATGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: IRADRLLHGDAARIHKNWAYALM*EREMEQ Trigger: CTGCTCCATTTCTCTCTCGCACATCAACGCATACGC...CCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGCCCTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | AGGAAAGCCACTACCTATGACAGAAGGCTGCTGCTGACTTCACGTTTACTCCTATCATTGTGGAGCAGCTaGTCTTTCTCTTCCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: RKATTYDRRLLLTSRLLLSLWSS*SFSSAG Trigger: GCCAGCGGAAGAGAAAGAGCAGCTGCTCCACAATGA...TAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTGTCATAGGTAGTGGCTTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | ACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACACGTCCCACAGGACGCCTCAGACAGTGTaGTCATCTGGGGCAGAATGT | + |
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Preference number: 4 (lower is better) Translates to: TAWFKNRRIFNPSHTSHRTPQTV*SSGAEC Trigger: ACATTCTGCCCCAGATGATCACACTGTCTGAGGCGT...CCTGTGGGACGTGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | TGCTGCCGGAGACAGCGCAGAACATCAGGGCAGACAGGCTCCTTCATGGTGATGTTGCTTATCCAAGTTTaGAATTTGCTGCTTTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: CCRRQRRTSGQTGSFMVMLLIQV*NLLLCE Trigger: TTCACAAAGCAGCAAATTGCAAACTTGGATAAGCAA...CATCACCATGAAGGAGCCTGTCTGCCCTGATGTTCTGCGCTGTCTCCGGCAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | CAGAAGGCTGCTGCTGACTTCACGTTTACTCCTAGGGTCTCCAGACCTGACGTTTTTGGAAAGTCTTCTTaGTGCAAAGTACGACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: QKAAADFTFTPRVSRPDVFGKSS*CKVRQP Trigger: AGGCTGTCGTACTTTGCAGCAAGAAGACTTTCCAAA...AACGTCAGGTCTGGAGACCCTAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | CAGAAGGCTGCTGCTGACTTCACGTTTACTCCTAGGGTCTCCAGACCTGACGTTTGTGCGAGAGAGAAATaGAGCAGAGTTTCTCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: QKAAADFTFTPRVSRPDVCAREK*SRVSQS Trigger: ACTTTGAGAAACTCTGCTCCATTTCTCTCTCGCACA...AACGTCAGGTCTGGAGACCCTAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | CAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGGATGCCCGGGACAATTTaGCTTGCTTATCCAAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: QTGSFMVMQPESIKTGLGMPGTI*LAYPSL Trigger: CAAACTTGGATAAGCAAGCCAAATTGTCCCGGGCAT...CCCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | AAAGTAGGCTTCAACACATACGTGATATCCTCCAGCGAGGAATCAATGATTTCATCCAAGTACGGGCAGTaGCGACTCCTCCGGTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: KVGFNTYVISSSEESMISSKYGQ*RLLRSS Trigger: TGAAGACCGGAGGAGTCGTCACTGCCCGTACTTGGA...TGAAATCATTGATTCCTCGCTGGAGGATATCACGTATGTGTTGAAGCCTACTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| CDS-3UTR TCA 90 bp | CATCCATCTGTAAGAGTTCTGCCTGCTGATGCTGAAAGGGAAGAGTGTCGACCAAGCTCTCCAAAACGCTaGACCAACAAGAACATGATG | + |
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Preference number: 4 (lower is better) Translates to: HPSVRVLPADAEREECRPSSPKR*TNKNMM Trigger: CATCATGTTCTTGTTGGTTCAGCGTTTTGGAGAGCT...TGGTCGACACTCTTCCCTTTCAGCATCAGCAGGCAGAACTCTTACAGATGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR TCA 90 bp | ACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACACGTCCCACAGGGCTGGCAGATCAGGATaGGGAAGCTTTTTGGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: TAWFKNRRIFNPSHTSHRAGRSG*GSFLVK Trigger: TTTCACCAAAAAGCTTCCTCATCCTGATCTGCCAGC...CCTGTGGGACGTGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | AGGGCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGTAATTCATACCACTTaGCAGTCCCATGATGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: RADRLLHGDAARIHKNWTVIHTT*QSHDEA Trigger: TGCTTCATCATGGGACTGGCAAGTGGTATGAATTAC...AGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGCCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | GCCTCAATGGGGTATATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTACAGTCCCACGATCCCTaGCAGGTAAGTGGTGCCATC | + |
|
Preference number: 4 (lower is better) Translates to: ASMGYMKQQPGLKTGGYLQSHDP*QVSGAI Trigger: GATGGCACCACTTACCTGCCAGGGATCGTGGGACTG...TAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATATACCCCATTGAGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | TTATCCAAGTTTGCAATTTGCTGCTTTGTGAAAGTAGGCTTCAACACATACGTGTTAAGCCCCGGCCTGTaGGGACAGGGAAAAGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: LSKFAICCFVKVGFNTYVLSPGL*GQGKGL Trigger: CAAGCCTTTTCCCTGTCCCCACAGGCCGGGGCTTAA...CACGTATGTGTTGAAGCCTACTTTCACAAAGCAGCAAATTGCAAACTTGGATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
||
| CDS-3UTR TCA 90 bp | CAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGGGGTGAAAATTCTCATTaGTCCCTGGAAAACATCATT | + |
|
Preference number: 4 (lower is better) Translates to: QTGSFMVMQPESIKTGLGGENSH*SLENII Trigger: AATGATGTTTTCCAGGGATCAATGAGAATTTTCACC...CCCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTG 46% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR GCA 90 bp | GCCTCAATGGGGTATATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTACTGGCAGGTAAGTGGTaGCATCATATGCCCGGGACA | + |
|
Preference number: 4 (lower is better) Translates to: ASMGYMKQQPGLKTGGYLLAGKW*HHMPGT Trigger: TGTCCCGGGCATATGATGGCACCACTTACCTGCCAG...TAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATATACCCCATTGAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | ACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACACGTCCCACAGGGGAAAGTCTTCTTGCTaGAAAGTACGACAGCCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: TAWFKNRRIFNPSHTSHRGKSSC*KVRQPE Trigger: TTCAGGCTGTCGTACTTTGCAGCAAGAAGACTTTCC...CCTGTGGGACGTGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | CAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGGCATTTGCATAGTCGTTaGCTTTTATGTTGTTCAGTC | + |
|
Preference number: 4 (lower is better) Translates to: QTGSFMVMQPESIKTGLGHLHSR*LLCCSV Trigger: GACTGAACAACATAAAAGCCAACGACTATGCAAATG...CCCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CCA 90 bp | AAACTGGACTGGGGCAGGAATCTTTCAGTCAGTCTGTGTTCAGCGACAGCTTCATTCTTGTGGACGGCTTaGACTTCTTCAGATAAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: KLDWGRNLSVSLCSATASFLWTA*TSSDKY Trigger: ATACTTATCTGAAGAAGTCCAAGCCGTCCACAAGAA...TGAAGCTGTCGCTGAACACAGACTGACTGAAAGATTCCTGCCCCAGTCCAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CCA 90 bp | GCCTCAATGGGGTATATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTAAAGCCCCCTGCTGGTTaGTTTCATCATTGTCCCGCC | + |
|
Preference number: 4 (lower is better) Translates to: ASMGYMKQQPGLKTGGYLKPPAG*FHHCPA Trigger: GGCGGGACAATGATGAAACCAACCAGCAGGGGGCTT...TAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATATACCCCATTGAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR GCA 90 bp | TTGATACTTGCAGCAATTCAAATAAGGCATCCATCTGTAAGAGTTCTGCCTGCTAGTGGTGCCATCATATaGCCGGGACAATTTGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: LILAAIQIRHPSVRVLPASGAII*PGQFGL Trigger: CAAGCCAAATTGTCCCGGGCATATGATGGCACCACT...AGCAGGCAGAACTCTTACAGATGGATGCCTTATTTGAATTGCTGCAAGTATCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CCA 90 bp | TCTCCAGACCTGACGTTTCTACCGAACTGTCTGTTCTTTGATACTTGCAGCAATTGGTACTCATCATTGTaGAGCAGCTGCTCTTTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SPDLTFLPNCLFFDTCSNWYSSL*SSCSFS Trigger: AGAGAAAGAGCAGCTGCTCCACAATGATGAGTACCA...ATTGCTGCAAGTATCAAAGAACAGACAGTTCGGTAGAAACGTCAGGTCTGGAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CCA 90 bp | CAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGGGAAGTTGACAATTGTTaGATTCTTCTCCACAAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: QTGSFMVMQPESIKTGLGEVDNC*ILLHKE Trigger: TTCTTTGTGGAGAAGAATCCAACAATTGTCAACTTC...CCCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | TTGATACTTGCAGCAATTCAAATAAGGCATCCATCTGTAAGAGTTCTGCCTGCTGACAGTGTGATCATCTaGGGCAGAATGTCTGTCACC | + |
|
Preference number: 4 (lower is better) Translates to: LILAAIQIRHPSVRVLPADSVII*GRMSVT Trigger: GGTGACAGACATTCTGCCCCAGATGATCACACTGTC...AGCAGGCAGAACTCTTACAGATGGATGCCTTATTTGAATTGCTGCAAGTATCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| 3UTR CAA 72 bp | GTAAGTGGTGCCATCATATGCCCGGGACAATTTGGCTaGCTTATCCAAGTTTGCAATTTGCTGCTTTGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: VSGAIICPGQFG*LIQVCNLLLCE Trigger: TTCACAAAGCAGCAAATTGCAAACTTGGATAAGCAAGCCAAATTGTCCCGGGCATATGATGGCACCACTTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
||
| CDS-3UTR CCA 90 bp | TATATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACATTGAAGAGAGGCACCTaGGGGATGATGAGCTGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: YMKQQPGLKTGGYLIHRTLKRGT*GMMSCS Trigger: GGAGCAGCTCATCATCCCCCAGGTGCCTCTCTTCAA...TGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR GCA 90 bp | TCTCCAGACCTGACGTTTCTACCGAACTGTCTGTTCTTTGATACTTGCAGCAATCGGGACAATTTGGCTTaGTTATCCAAGTTTGCAATT | + |
|
Preference number: 4 (lower is better) Translates to: SPDLTFLPNCLFFDTCSNRDNLA*LSKFAI Trigger: AATTGCAAACTTGGATAAGCAAGCCAAATTGTCCCG...ATTGCTGCAAGTATCAAAGAACAGACAGTTCGGTAGAAACGTCAGGTCTGGAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR GCA 90 bp | TATATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACAGAGGGCTTGCCATCATaGACGATGTTGGCGATGAGA | + |
|
Preference number: 4 (lower is better) Translates to: YMKQQPGLKTGGYLIHRTEGLPS*TMLAMR Trigger: TCTCATCGCCAACATCGTGCATGATGGCAAGCCCTC...TGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CCA 90 bp | CAACACATACGTGATATCCTCCAGCGAGGAATCAATGATTTCATAGTTGTCAGGTGTGCGAGAGAGAAATaGAGCAGAGTTTCTCAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: QHIRDILQRGINDFIVVRCAREK*SRVSQS Trigger: ACTTTGAGAAACTCTGCTCCATTTCTCTCTCGCACA...CCTGACAACTATGAAATCATTGATTCCTCGCTGGAGGATATCACGTATGTGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| CDS-3UTR TCA 90 bp | TATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACACGGAGGAAGCTTTTTGGTaGAAATTCTCATTGATCCCT | + |
|
Preference number: 4 (lower is better) Translates to: YETTAWFKNRRIFNPSHTEEAFW*KFSLIP Trigger: AGGGATCAATGAGAATTTTCACCAAAAAGCTTCCTC...CGTGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | GCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGGAGCCCTCAGAGGGCTaGCCATCATGCACGATGTTG | + |
|
Preference number: 5 (lower is better) Translates to: ADRLLHGDAARIHKNWTGEPSEG*PSCTML Trigger: CAACATCGTGCATGATGGCAAGCCCTCTGAGGGCTC...CCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS TCA 90 bp | CATCCTTATAGAGCGGGGCCGTGGGAAGGTCCAGCGTCAGGTACATaGACGTGGACTCTACCATCGTCTCTTGGTACTCATCATTGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: HPYRAGPWEGPASGT*TWTLPSSLGTHHCG Trigger: TCCACAATGATGAGTACCAAGAGACGATGGTAGAGTCCACGTTCATGTACCTGACGCTGGACCTTCCCACGGCCCCGCTCTATAAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS TCA 90 bp | TGTAGGAGCCCTCAGAGGGCTTGCCATCATGCACGATGTTGGCGATaGGATCATAGGTGGTGTTCTTGTGGACGGCTTGGACTTCTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: CRSPQRACHHARCWR*DHRWCSCGRLGLLQ Trigger: CTGAAGAAGTCCAAGCCGTCCACAAGAACACCACCTATGATCTCATCGCCAACATCGTGCATGATGGCAAGCCCTCTGAGGGCTCCTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS CCA 90 bp | AGGTCCAGCGTCAGGTACATGAACGTGGACTCTACCATCGTCTCTTaGTACTCATCATTGTGGAGCAGCTGCTCTTTCTCTTCCGCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: RSSVRYMNVDSTIVS*YSSLWSSCSFSSAG Trigger: GCCAGCGGAAGAGAAAGAGCAGCTGCTCCACAATGATGAGTACCAAGAGACGATGGTAGAGTCCACGTTCATGTACCTGACGCTGGACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CAA 90 bp | AAACTGGACTGGGGCAGGAATCTTTCAGTCAGTCTGTGTTCAGCGACAGCTTCAAACTTGGCCAGGATGTaGAAGAGAGGCACCTGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: KLDWGRNLSVSLCSATASNLARM*KRGTWG Trigger: CCCCCAGGTGCCTCTCTTCAACATCCTGGCCAAGTT...TGAAGCTGTCGCTGAACACAGACTGACTGAAAGATTCCTGCCCCAGTCCAGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | GCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGAGATACGGAGGCAGCTaGGTGAGCTGGAAGCGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: ADRLLHGDAARIHKNWTGRYGGS*VSWKRF Trigger: GAAACGCTTCCAGCTCACCAAGCTGCCTCCGTATCT...CCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS TCA 90 bp | TCGAAGTCCAGCACACTCCTATTAATGGTATCCAAGTACGGGCAGTaGCGACTCCTCCGGTCTTCAGAATCCACTCGGCCATTCTTTGCT | + |
|
Preference number: 5 (lower is better) Translates to: SKSSTLLLMVSKYGQ*RLLRSSESTRPFFA Trigger: AGCAAAGAATGGCCGAGTGGATTCTGAAGACCGGAGGAGTCGTCACTGCCCGTACTTGGATACCATTAATAGGAGTGTGCTGGACTTCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS TCA 90 bp | CCCGGCCTTGAAAGTACTTGCCACACACCAGACAGGCGTATGCGTTaGTGTGCGAGAGAGAAATGGAGCAGAGTTTCTCAAAGTCGAAGT | + |
|
Preference number: 5 (lower is better) Translates to: PGLESTCHTPDRRMR*CAREKWSRVSQSRS Trigger: ACTTCGACTTTGAGAAACTCTGCTCCATTTCTCTCTCGCACATCAACGCATACGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGGCCGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | CAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGGTCGTTGGCTTTTATGTaGTTCAGTCCCACGATCCCT | + |
|
Preference number: 5 (lower is better) Translates to: QTGSFMVMQPESIKTGLGSLAFM*FSPTIP Trigger: AGGGATCGTGGGACTGAACAACATAAAAGCCAACGA...CCCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | AGGGCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGTGATGCCGTTGAACTaGGCCAGGATGTTGAAGAGA | + |
|
Preference number: 5 (lower is better) Translates to: RADRLLHGDAARIHKNWTVMPLN*ARMLKR Trigger: TCTCTTCAACATCCTGGCCAAGTTCAACGGCATCAC...AGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS TCA 90 bp | CATTGTCCCGCCTCTTCCAAATCTGAATGTACGCCTCAGACAGTGTaGTCATCTGGGGCAGAATGTCTGTCACCTGGAGGTCTTGTAATT | + |
|
Preference number: 5 (lower is better) Translates to: HCPASSKSECTPQTV*SSGAECLSPGGLVI Trigger: AATTACAAGACCTCCAGGTGACAGACATTCTGCCCCAGATGATCACACTGTCTGAGGCGTACATTCAGATTTGGAAGAGGCGGGACAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS GCA 90 bp | CAGGGAAAAGGCTTGAAAGTACTTGCCACACACCAGACAGGCGTATaGGTTGATGTGCGAGAGAGAAATGGAGCAGAGTTTCTCAAAGTC | + |
|
Preference number: 5 (lower is better) Translates to: QGKGLKVLATHQTGV*VDVRERNGAEFLKV Trigger: GACTTTGAGAAACTCTGCTCCATTTCTCTCTCGCACATCAACGCATACGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGCCTTTTCCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| CDS-3UTR CAA 90 bp | GCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGACTGGGCCGGGACAATTTGGCTaGCTTATCCAAGTTTGCAAT | + |
|
Preference number: 5 (lower is better) Translates to: ADRLLHGDAARIHKNWTGPGQFG*LIQVCN Trigger: ATTGCAAACTTGGATAAGCAAGCCAAATTGTCCCGG...CCCAGTCCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | AGGAAAGCCACTACCTATGACAGAAGGCTGCTGCTGACTTCACGTTTACTCCTAGTCTTTTTCTTCTTCTaGGTGCCTCCCAGAGCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: RKATTYDRRLLLTSRLLLVFFFF*VPPRAE Trigger: CTCTGCTCTGGGAGGCACCAAGAAGAAGAAAAAGAC...TAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTGTCATAGGTAGTGGCTTTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | ATCAGGGCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGTGGTTGGTTTCATCATaGTCCCGCCTCTTCCAAATC | + |
|
Preference number: 5 (lower is better) Translates to: IRADRLLHGDAARIHKNWWLVSS*SRLFQI Trigger: GATTTGGAAGAGGCGGGACAATGATGAAACCAACCA...CCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGCCCTGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | ATCAGGGCAGACAGGCTCCTTCATGGTGATGCAGCCAGAATCCATAAAAACTGGATTTGGAAAGTCTTCTaGCTGCAAAGTACGACAGCC | + |
|
Preference number: 5 (lower is better) Translates to: IRADRLLHGDAARIHKNWIWKVF*LQSTTA Trigger: GGCTGTCGTACTTTGCAGCAAGAAGACTTTCCAAAT...CCAGTTTTTATGGATTCTGGCTGCATCACCATGAAGGAGCCTGTCTGCCCTGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | AGGAAAGCCACTACCTATGACAGAAGGCTGCTGCTGACTTCACGTTTACTCCTATCTTGGTACTCATCATaGTGGAGCAGCTGCTCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: RKATTYDRRLLLTSRLLLSWYSS*WSSCSF Trigger: GAAAGAGCAGCTGCTCCACAATGATGAGTACCAAGA...TAGGAGTAAACGTGAAGTCAGCAGCAGCCTTCTGTCATAGGTAGTGGCTTTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS-3UTR CAA 90 bp | TTGATACTTGCAGCAATTCAAATAAGGCATCCATCTGTAAGAGTTCTGCCTGCTCAAGCCCCCTGCTGGTaGGTTTCATCATTGTCCCGC | + |
|
Preference number: 5 (lower is better) Translates to: LILAAIQIRHPSVRVLPAQAPCW*VSSLSR Trigger: GCGGGACAATGATGAAACCAACCAGCAGGGGGCTTG...AGCAGGCAGAACTCTTACAGATGGATGCCTTATTTGAATTGCTGCAAGTATCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS TCA 90 bp | AAAAGGCTTGAAAGTACTTGCCACACACCAGACAGGCGTATGCGTTaGTGTGCGAGAGAGAAATGGAGCAGAGTTTCTCAAAGTCGAAGT | + |
|
Preference number: 5 (lower is better) Translates to: KRLESTCHTPDRRMR*CAREKWSRVSQSRS Trigger: ACTTCGACTTTGAGAAACTCTGCTCCATTTCTCTCTCGCACATCAACGCATACGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGCCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| CDS-3UTR CAA 90 bp | AAACTGGACTGGGGCAGGAATCTTTCAGTCAGTCTGTGTTCAGCGACAGCTTCAACTCCATCCCCTTGTTaGGTAATTTGGAAAGTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KLDWGRNLSVSLCSATASTPSPC*VIWKVF Trigger: GAAGACTTTCCAAATTACCAAACAAGGGGATGGAGT...TGAAGCTGTCGCTGAACACAGACTGACTGAAAGATTCCTGCCCCAGTCCAGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CAA 90 bp | CGTGATATCCTCCAGCGAGGAATCAATGATTTCATAGTTGTCAGGAAGGCAGTAGGACAGGGAAAAGGCTaGAAAGTACTTGCCACACAC | + |
|
Preference number: 5 (lower is better) Translates to: RDILQRGINDFIVVRKAVGQGKG*KVLATH Trigger: GTGTGTGGCAAGTACTTTCAAGCCTTTTCCCTGTCC...TACTGCCTTCCTGACAACTATGAAATCATTGATTCCTCGCTGGAGGATATCACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
||
| CDS-3UTR CAA 90 bp | TATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACACGTTCTCCGTGATGCCGTaGAACTTGGCCAGGATGTTG | + |
|
Preference number: 5 (lower is better) Translates to: YETTAWFKNRRIFNPSHTFSVMP*NLARML Trigger: CAACATCCTGGCCAAGTTCAACGGCATCACGGAGAA...CGTGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CAA 90 bp | TCTCCAGACCTGACGTTTCTACCGAACTGTCTGTTCTTTGATACTTGCAGCAATCCCTTGTTTGGTAATTaGGAAAGTCTTCTTGCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: SPDLTFLPNCLFFDTCSNPLFGN*ESLLAA Trigger: TGCAGCAAGAAGACTTTCCAAATTACCAAACAAGGG...ATTGCTGCAAGTATCAAAGAACAGACAGTTCGGTAGAAACGTCAGGTCTGGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CAA 90 bp | TATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACACGTATGCCCGGGACAATTaGGCTTGCTTATCCAAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: YETTAWFKNRRIFNPSHTYARDN*ACLSKF Trigger: AAACTTGGATAAGCAAGCCAAATTGTCCCGGGCATA...CGTGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS-3UTR CAA 90 bp | TATATGAAACAACAGCCTGGTTTAAAAACAGGAGGATATTTAATCCATCGCACATTTGTGATAGGGAAGTaGACAATTGTTGGATTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: YMKQQPGLKTGGYLIHRTFVIGK*TIVGFF Trigger: GAAGAATCCAACAATTGTCAACTTCCCTATCACAAA...TGTGCGATGGATTAAATATCCTCCTGTTTTTAAACCAGGCTGTTGTTTCATATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS TCA 72 bp | AGAGCGGGGCCGTGGGAAGGTCCAGCGTCAGGTACATaGACGTGGACTCTACCATCGTCTCTTGGTACTCAT | + |
|
Preference number: 6 (lower is better) Translates to: RAGPWEGPASGT*TWTLPSSLGTH Trigger: ATGAGTACCAAGAGACGATGGTAGAGTCCACGTTCATGTACCTGACGCTGGACCTTCCCACGGCCCCGCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS TCA 72 bp | CCTCAGAGGGCTTGCCATCATGCACGATGTTGGCGATaGGATCATAGGTGGTGTTCTTGTGGACGGCTTGGA | + |
|
Preference number: 6 (lower is better) Translates to: PQRACHHARCWR*DHRWCSCGRLG Trigger: TCCAAGCCGTCCACAAGAACACCACCTATGATCTCATCGCCAACATCGTGCATGATGGCAAGCCCTCTGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
||
| CDS TCA 72 bp | AGCACACTCCTATTAATGGTATCCAAGTACGGGCAGTaGCGACTCCTCCGGTCTTCAGAATCCACTCGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: STLLLMVSKYGQ*RLLRSSESTRP Trigger: TGGCCGAGTGGATTCTGAAGACCGGAGGAGTCGTCACTGCCCGTACTTGGATACCATTAATAGGAGTGTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070345.5 ENSMUST00000206262.2 |
||
| CDS CAA 90 bp | AAGGTCCAGCGTCAGGTACATGAACGTGGACTCTACCATCGTCTCTaGGTACTCATCATTGTGGAGCAGCTGCTCTTTCTCTTCCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: KVQRQVHERGLYHRL*VLIIVEQLLFLFRW Trigger: CCAGCGGAAGAGAAAGAGCAGCTGCTCCACAATGATGAGTACCAAGAGACGATGGTAGAGTCCACGTTCATGTACCTGACGCTGGACCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS TCA 72 bp | GCCTCTTCCAAATCTGAATGTACGCCTCAGACAGTGTaGTCATCTGGGGCAGAATGTCTGTCACCTGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: ASSKSECTPQTV*SSGAECLSPGG Trigger: ACCTCCAGGTGACAGACATTCTGCCCCAGATGATCACACTGTCTGAGGCGTACATTCAGATTTGGAAGAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS CAA 72 bp | AACGTGGACTCTACCATCGTCTCTTGGTACTCATCATaGTGGAGCAGCTGCTCTTTCTCTTCCGCTGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: NVDSTIVSWYSS*WSSCSFSSAGR Trigger: TCTGCCAGCGGAAGAGAAAGAGCAGCTGCTCCACAATGATGAGTACCAAGAGACGATGGTAGAGTCCACGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS GCA 72 bp | GCCTTGAAAGTACTTGCCACACACCAGACAGGCGTATaGGTTGATGTGCGAGAGAGAAATGGAGCAGAGTTT | + |
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Preference number: 6 (lower is better) Translates to: ALKVLATHQTGV*VDVRERNGAEF Trigger: AAACTCTGCTCCATTTCTCTCTCGCACATCAACGCATACGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS GCA 72 bp | GGCTTGAAAGTACTTGCCACACACCAGACAGGCGTATaGGTTGATGTGCGAGAGAGAAATGGAGCAGAGTTT | + |
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Preference number: 6 (lower is better) Translates to: GLKVLATHQTGV*VDVRERNGAEF Trigger: AAACTCTGCTCCATTTCTCTCTCGCACATCAACGCATACGCCTGTCTGGTGTGTGGCAAGTACTTTCAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206262.2 |
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| CDS CAA 72 bp | CGTCAGGTACATGAACGTGGACTCTACCATCGTCTCTaGGTACTCATCATTGTGGAGCAGCTGCTCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: RQVHERGLYHRL*VLIIVEQLLFL Trigger: GAGAAAGAGCAGCTGCTCCACAATGATGAGTACCAAGAGACGATGGTAGAGTCCACGTTCATGTACCTGACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS TCA 72 bp | GAAAGTACTTGCCACACACCAGACAGGCGTATGCGTTaGTGTGCGAGAGAGAAATGGAGCAGAGTTTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: ESTCHTPDRRMR*CAREKWSRVSQ Trigger: TTGAGAAACTCTGCTCCATTTCTCTCTCGCACATCAACGCATACGCCTGTCTGGTGTGTGGCAAGTACTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000070345.5 ENSMUST00000206262.2 |
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| CDS CCA 72 bp | GTCAGGTACATGAACGTGGACTCTACCATCGTCTCTTaGTACTCATCATTGTGGAGCAGCTGCTCTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: VRYMNVDSTIVS*YSSLWSSCSFS Trigger: AGAGAAAGAGCAGCTGCTCCACAATGATGAGTACCAAGAGACGATGGTAGAGTCCACGTTCATGTACCTGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS TCA 72 bp | AGCAGCTGCTCTTTCTCTTCCGCTGGCAGATCAGGATaGGGAAGCTTTTTGGTGAAAATTCTCATTGATCCC | + |
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Preference number: 6 (lower is better) Translates to: SSCSFSSAGRSG*GSFLVKILIDP Trigger: GGGATCAATGAGAATTTTCACCAAAAAGCTTCCTCATCCTGATCTGCCAGCGGAAGAGAAAGAGCAGCTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS CAA 72 bp | AGACAGGAAGTCAACTCCATCCCCTTGTTTGGTAATTaGGAAAGTCTTCTTGCTGCAAAGTACGACAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: RQEVNSIPLFGN*ESLLAAKYDSL Trigger: CAGGCTGTCGTACTTTGCAGCAAGAAGACTTTCCAAATTACCAAACAAGGGGATGGAGTTGACTTCCTGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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| CDS CAA 72 bp | AATCTCTTGATGCAAAAGATTAGATACGGAGGCAGCTaGGTGAGCTGGAAGCGTTTCAGGAAGTTCTCCTTA | + |
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Preference number: 6 (lower is better) Translates to: NLLMQKIRYGGS*VSWKRFRKFSL Trigger: TAAGGAGAACTTCCTGAAACGCTTCCAGCTCACCAAGCTGCCTCCGTATCTAATCTTTTGCATCAAGAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070345.5 |
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