RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USP35 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035713

Ensembl transcript IDs: ENSMUST00000139582.9, ENSMUST00000168435.7

Found 272 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TACTGGACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTaGCTGGCCTTTCCAGGATTGGCCCTGCAGGGAGGCAAAGCCCAG +
Preference number: 1 (lower is better)
Translates to: YWTQDTKLTPPWLPS*LAFPGLALQGGKAQ
Trigger: CTGGGCTTTGCCTCCCTGCAGGGCCAATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGTCCAGTA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR CCA 90 bp AGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCACCCTaGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGGCCCTGCAGGGA +
Preference number: 1 (lower is better)
Translates to: RKKCYWTQDTKLTPP*LPSWLAFPGLALQG
Trigger: TCCCTGCAGGGCCAATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR CCA 90 bp GGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACCCTaGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGT +
Preference number: 1 (lower is better)
Translates to: GPSSSSLPSERPASP*ACLHSSLKPQMAEC
Trigger: ACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR TCA 90 bp GTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTaGCACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGG +
Preference number: 1 (lower is better)
Translates to: VKDLERSATGHRTPS*HHPGSRAGWPFQDW
Trigger: CCAATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR GCA 90 bp TCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACCCTGGGCTTaGCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTACC +
Preference number: 1 (lower is better)
Translates to: SSSSLPSERPASPWA*LHSSLKPQMAECST
Trigger: GGTAGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR GCA 90 bp TATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTaGTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGAT +
Preference number: 1 (lower is better)
Translates to: YPKWSLFILLALRKT*FTLGLPPQLPKTPD
Trigger: ATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR GCA 90 bp TCAAGCTACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTaGCCTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCT +
Preference number: 1 (lower is better)
Translates to: SSYRLISQMVPLHPP*PQKDLLHPGLASTA
Trigger: AGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTAGCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR GCA 90 bp GCCTTTCCAGGATTGGCCCTGCAGGGAGGCAAAGCCCAGAGTGGATaGTCCTTGTTAGTCGGGACAGTAGTCTATAACATCGTAAGAGGA +
Preference number: 1 (lower is better)
Translates to: AFPGLALQGGKAQSG*SLLVGTVVYNIVRG
Trigger: TCCTCTTACGATGTTATAGACTACTGTCCCGACTAACAAGGAGCATCCACTCTGGGCTTTGCCTCCCTGCAGGGCCAATCCTGGAAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR TCA 90 bp TTCTTCTCTTCACTGAGAAGGGGCTATAGTAGTCTCAGGGCACGATaGGGTCAGGTGCATTATACACAGTTCATACCTACCCAGCCCTCA +
Preference number: 1 (lower is better)
Translates to: FFSSLRRGYSSLRAR*GQVHYTQFIPTQPS
Trigger: TGAGGGCTGGGTAGGTATGAACTGTGTATAATGCACCTGACCTCATCGTGCCCTGAGACTACTATAGCCCCTTCTCAGTGAAGAGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR TCA 90 bp GAGGAGCCAAGCCAGCTAGCTTCCTCAGATGAGACAATGGCTTTCTaGCAGACTAATGTCTTCAGTAAAATAAGGACTCTGGACCTTAAC +
Preference number: 1 (lower is better)
Translates to: EEPSQLASSDETMAF*QTNVFSKIRTLDLN
Trigger: GTTAAGGTCCAGAGTCCTTATTTTACTGAAGACATTAGTCTGTCAGAAAGCCATTGTCTCATCTGAGGAAGCTAGCTGGCTTGGCTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR TCA 90 bp AGAGAATTTTATTCCTATTTAAGAACACAGGTTTCTTCTCTTCACTaGGAAGGGGCTATAGTAGTCTCAGGGCACGATGAGGTCAGGTGC +
Preference number: 1 (lower is better)
Translates to: REFYSYLRTQVSSLH*EGAIVVSGHDEVRC
Trigger: GCACCTGACCTCATCGTGCCCTGAGACTACTATAGCCCCTTCTCAGTGAAGAGAAGAAACCTGTGTTCTTAAATAGGAATAAAATTCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGCCCTGAGCTCCACCTaGCCCACTCTGAGGTTGGCT +
Preference number: 2 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPALSST*PTLRLA
Trigger: AGCCAACCTCAGAGTGGGCCAGGTGGAGCTCAGGGC...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGCAGAGTGTTCTACCTaGGCCCTGAGCTCCACCTGG +
Preference number: 2 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPAECST*ALSSTW
Trigger: CCAGGTGGAGCTCAGGGCCCAGGTAGAACACTCTGC...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR CAA 90 bp AAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATaGGCCCTGCAGGGAGGCAAAGCCCAGAGTGGATGCTCCTTGTTA +
Preference number: 2 (lower is better)
Translates to: KLTPPWLPSWLAFPG*ALQGGKAQSGCSLL
Trigger: TAACAAGGAGCATCCACTCTGGGCTTTGCCTCCCTGCAGGGCCAATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTAGGCAAAGCCCAGAGTaGATGCTCCTTGTTAGTCGG +
Preference number: 2 (lower is better)
Translates to: GHQADTTLAPELAGLSRIRQSPE*MLLVSR
Trigger: CCGACTAACAAGGAGCATCCACTCTGGGCTTTGCCT...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTGGCTCCCGAGCTGGCTaGCCTTTCCAGGATTGGCCC +
Preference number: 2 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLGSRAG*PFQDWP
Trigger: GGGCCAATCCTGGAAAGGCCAGCCAGCTCGGGAGCC...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR TCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTCACAGGACACCAAGCTaGCACCACCCTGGCTCCCGA +
Preference number: 2 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLHRTPS*HHPGSR
Trigger: TCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTG...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR CAA 90 bp TTCAAGCTACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTaGCCCTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGC +
Preference number: 2 (lower is better)
Translates to: FKLQTDIPNGPSSSS*PSERPASPWACLHS
Trigger: GCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTAGCTTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR GCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCAGCTTCACCCTGGGCTTaGCTCCACAGCTCCCTAAAA +
Preference number: 2 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPASPWA*LHSSLK
Trigger: TTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGC...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTAAAGCTGACACCACCCTaGCTCCCGAGCTGGCTGGCC +
Preference number: 2 (lower is better)
Translates to: HPHACKTQQVQTLIYLILKLTPP*LPSWLA
Trigger: GGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTT...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR GCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCAAAAGCCCAGAGTGGATaGTCCTTGTTAGTCGGGACA +
Preference number: 2 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPKAQSG*SLLVGT
Trigger: TGTCCCGACTAACAAGGAGCATCCACTCTGGGCTTT...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTATGGCCTTTCCAGGATTaGCCCTGCAGGGAGGCAAAG +
Preference number: 2 (lower is better)
Translates to: HPHACKTQQVQTLIYLILWPFQD*PCREAK
Trigger: CTTTGCCTCCCTGCAGGGCCAATCCTGGAAAGGCCA...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR GCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTGCTTCACCCTGGGCTTaGCTCCACAGCTCCCTAAAA +
Preference number: 2 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSASPWA*LHSSLK
Trigger: TTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGC...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATGCCTAAGGAGCTTTaGGTTTCAGTTTCTCTGTGC +
Preference number: 2 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLMPKEL*VSVSLC
Trigger: GCACAGAGAAACTGAAACCCAAAGCTCCTTAGGCAT...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR GCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTCCTCTTCATCCTCCTTaGCCTCAGAAAGACCTGCTT +
Preference number: 2 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSPLHPP*PQKDLL
Trigger: AAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGG...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR GCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTAAAGCCCAGAGTGGATaGTCCTTGTTAGTCGGGACA +
Preference number: 2 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSKAQSG*SLLVGT
Trigger: TGTCCCGACTAACAAGGAGCATCCACTCTGGGCTTT...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR GCA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTATTGTCTCTGATCCTGTaGTATGCTGCCTTCCATCCA +
Preference number: 2 (lower is better)
Translates to: WKNSILHSLQRREFYSYLLSLIL*YAAFHP
Trigger: TGGATGGAAGGCAGCATAGCACAGGATCAGAGACAA...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTATGCCTAAGGAGCTTTaGGTTTCAGTTTCTCTGTGC +
Preference number: 2 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSMPKEL*VSVSLC
Trigger: GCACAGAGAAACTGAAACCCAAAGCTCCTTAGGCAT...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR CCA 72 bp CAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTaGCTGGCCTTTCCAGGATTGGCCCTGCAGGGAGGC +
Preference number: 3 (lower is better)
Translates to: QDTKLTPPWLPS*LAFPGLALQGG
Trigger: GCCTCCCTGCAGGGCCAATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR GCA 72 bp GGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGGCCCTaGAGGGAGGCAAAGCCCAGAGTGGATGCTCCTTGT +
Preference number: 3 (lower is better)
Translates to: GSRAGWPFQDWP*REAKPRVDAPC
Trigger: ACAAGGAGCATCCACTCTGGGCTTTGCCTCCCTGCAGGGCCAATCCTGGAAAGGCCAGCCAGCTCGGGAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR CCA 72 bp TGCTACTGGACACAGGACACCAAGCTGACACCACCCTaGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGGCC +
Preference number: 3 (lower is better)
Translates to: CYWTQDTKLTPP*LPSWLAFPGLA
Trigger: GGCCAATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR CCA 72 bp ATGGCAGAGTGTTCTACCTGGGCCCTGAGCTCCACCTaGCCCACTCTGAGGTTGGCTGTGATAGCCCCAACA +
Preference number: 3 (lower is better)
Translates to: MAECSTWALSST*PTLRLAVIAPT
Trigger: TGTTGGGGCTATCACAGCCAACCTCAGAGTGGGCCAGGTGGAGCTCAGGGCCCAGGTAGAACACTCTGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR GCA 72 bp AGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTaGCCTCAGAAAGACCTGCTTCACCCTGGGCTTGCC +
Preference number: 3 (lower is better)
Translates to: RLISQMVPLHPP*PQKDLLHPGLA
Trigger: GGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR GCA 72 bp GGATTGGCCCTGCAGGGAGGCAAAGCCCAGAGTGGATaGTCCTTGTTAGTCGGGACAGTAGTCTATAACATC +
Preference number: 3 (lower is better)
Translates to: GLALQGGKAQSG*SLLVGTVVYNI
Trigger: GATGTTATAGACTACTGTCCCGACTAACAAGGAGCATCCACTCTGGGCTTTGCCTCCCTGCAGGGCCAATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CAA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCACCCTCTTCATCCTCCTaGCCCTCAGAAAGACCTGCT +
Preference number: 3 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPPSSSS*PSERPA
Trigger: AGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGG...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR CCA 72 bp AAAGAGCTGAGTGAAGGATCTAGAAAGAAGTGCTACTaGACACAGGACACCAAGCTGACACCACCCTGGCTC +
Preference number: 3 (lower is better)
Translates to: KELSEGSRKKCY*TQDTKLTPPWL
Trigger: GAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACTCAGCTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CAA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTCTGGCCTTTCCAGGATaGGCCCTGCAGGGAGGCAAA +
Preference number: 3 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSLAFPG*ALQGGK
Trigger: TTTGCCTCCCTGCAGGGCCAATCCTGGAAAGGCCAG...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CAA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTACTGGCCTTTCCAGGATaGGCCCTGCAGGGAGGCAAA +
Preference number: 3 (lower is better)
Translates to: HPHACKTQQVQTLIYLILLAFPG*ALQGGK
Trigger: TTTGCCTCCCTGCAGGGCCAATCCTGGAAAGGCCAG...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR TCA 72 bp GGGTTTCAGTTTCTCTGTGCACTTCAAGCTACAGACTaGTATCCCAAATGGTCCCTCTTCATCCTCCTTGCC +
Preference number: 3 (lower is better)
Translates to: GFQFLCALQATD*YPKWSLFILLA
Trigger: GGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTAGCTTGAAGTGCACAGAGAAACTGAAACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR GCA 72 bp ATTGAGAAAGAGCTGAGTGAAGGATCTAGAAAGAAGTaGTACTGGACACAGGACACCAAGCTGACACCACCC +
Preference number: 3 (lower is better)
Translates to: IEKELSEGSRKK*YWTQDTKLTPP
Trigger: GGGTGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACTCAGCTCTTTCTCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR-3UTR CAA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTACCCTCTTCATCCTCCTaGCCCTCAGAAAGACCTGCT +
Preference number: 3 (lower is better)
Translates to: WKNSILHSLQRREFYSYLPSSSS*PSERPA
Trigger: AGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGG...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
3UTR TCA 72 bp AGCCAGCTAGCTTCCTCAGATGAGACAATGGCTTTCTaGCAGACTAATGTCTTCAGTAAAATAAGGACTCTG +
Preference number: 3 (lower is better)
Translates to: SQLASSDETMAF*QTNVFSKIRTL
Trigger: CAGAGTCCTTATTTTACTGAAGACATTAGTCTGTCAGAAAGCCATTGTCTCATCTGAGGAAGCTAGCTGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTTGCGCGCGCCACAGCTaGGCCAGGAGCCCGCTCACC +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRICARHS*ARSPLT
Trigger: GGTGAGCGGGCTCCTGGCGCAGCTGTGGCGCGCGCA...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTAAGACGTCGGGGTGGTaGCGACCCGCCACGTGCAGC +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIKTSGW*RPATCS
Trigger: GCTGCACGTGGCGGGTCGCCACCACCCCGACGTCTT...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGCACGCGGCGCGCACTaGAGAACTCGGCGAAGACGT +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPARGAH*RTRRRR
Trigger: ACGTCTTCGCCGAGTTCTTCAGTGCGCGCCGCGTGC...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGCGGCAGCTCCTCCGTaGCACCCACGTAGAGGCGCG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAAAAPP*HPRRGA
Trigger: CGCGCCTCTACGTGGGTGGCACGGAGGAGCTGCCGC...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCACCGTCGGGCAGCAGCTaGAGCCCTAGCTGCACACAG +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPPSGSS*SPSCTQ
Trigger: CTGTGTGCAGCTAGGGCTGCAGCTGCTGCCCGACGG...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTGGCGCTCGCACACGGTaGGCAGGACCTCGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSGARTR*AGPRAA
Trigger: TGCGGCGCGAGGTCCTGCGCACCGTGTGCGAGCGCC...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCATGCGCGCGCCACAGCTaGGCCAGGAGCCCGCTCACC +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPCARHS*ARSPLT
Trigger: GGTGAGCGGGCTCCTGGCGCAGCTGTGGCGCGCGCA...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGCCACGTGCAGCAACTaGCAGCCCACGCGGCGCGGC +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPATCSN*QPTRRG
Trigger: GCCGCGCCGCGTGGGCTGCCAGTTGCTGCACGTGGC...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTAGCCCGCTCACCTGCTaGGCCTGCTCCAGGAACTCC +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRISPLTC*ACSRNS
Trigger: GGAGTTCCTGGAGCAGGCCCAGCAGGTGAGCGGGCT...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTTCCCAGGACAGGAGCTaGCCGAGCAGCACCCTCACG +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRISQDRS*PSSTLT
Trigger: CGTGAGGGTGCTGCTCGGCCAGCTCCTGTCCTGGGA...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTCCGCAGGGTCCTCCCTaGGCCTCTGGCGGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIPQGPP*ASGGRR
Trigger: TCTTCTACCGCCAGAGGCCCAGGGAGGACCCTGCGG...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGCGAAGACGTCGGGGTaGTGGCGACCCGCCACGTGC +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPAKTSG*WRPATC
Trigger: GCACGTGGCGGGTCGCCACCACCCCGACGTCTTCGC...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCACGCTGGCCAAGGCGCTaGACGGTGGCTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMARWPRR*TVAPPL
Trigger: CAGAGGAGGAGCCACCGTCCAGCGCCTTGGCCAGCG...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGCACGCGGCGCGCACTaGAGAACTCGGCGAAGACGT +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAARGAH*RTRRRR
Trigger: ACGTCTTCGCCGAGTTCTTCAGTGCGCGCCGCGTGC...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAAGCAGCGCCAGGCACTaGTCCCGCTCCAAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPSSARH*SRSKGC
Trigger: GCAGCCCTTGGAGCGGGAGCAGTGCCTGGCGCTGCT...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCACCGTCGGGCAGCAGCTaGAGCCCTAGCTGCACACAG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAPSGSS*SPSCTQ
Trigger: CTGTGTGCAGCTAGGGCTGCAGCTGCTGCCCGACGG...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCACAAGGCGCTGGACGGTaGCTCCTCCTCTGTACAGGA +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPQGAGR*LLLCTG
Trigger: TCCTGTACAGAGGAGGAGCCACCGTCCAGCGCCTTG...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTCAAGGCGCTGGACGGTaGCTCCTCCTCTGTACAGGA +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIQGAGR*LLLCTG
Trigger: TCCTGTACAGAGGAGGAGCCACCGTCCAGCGCCTTG...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGCTGCTCCAGGCAGCTaGTCCCAGAGTTCGAGTCCT +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPAAPGS*SQSSSP
Trigger: AGGACTCGAACTCTGGGACCAGCTGCCTGGAGCAGC...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGCTGCTCCAGGCAGCTaGTCCCAGAGTTCGAGTCCT +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIAAPGS*SQSSSP
Trigger: AGGACTCGAACTCTGGGACCAGCTGCCTGGAGCAGC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGTGGCAGCCTCCCTATaGGTCCCTGGTCCTAAGCTG +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIVAASL*VPGPKL
Trigger: CAGCTTAGGACCAGGGACCCATAGGGAGGCTGCCAC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTTGTCTGCTCCCTGGGTaGAGTGGCAGCCTCCCTATG +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRICLLPG*SGSLPM
Trigger: CATAGGGAGGCTGCCACTCCACCCAGGGAGCAGACA...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAACCATGGCGGGAATGTaGGGGAGAAGCAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPTMAGM*GRSRWK
Trigger: CTTCCACCTGCTTCTCCCTCACATTCCCGCCATGGT...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCACAGTTCACTCTTCTGTaGGGTCCAGGCATCCTGCCC +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPQFTLL*GPGILP
Trigger: GGGCAGGATGCCTGGACCTCACAGAAGAGTGAACTG...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCACGAAACACCATGCAGTaGACCAGCTCTGCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPRNTMQ*TSSASC
Trigger: GCAGCTGGCAGAGCTGGTGCACTGCATGGTGTTTCG...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGAGGTCCAGGCATCCTaGCCCAGCAGCTGCTTGATT +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIEVQAS*PSSCLI
Trigger: AATCAAGCAGCTGCTGGGGCAGGATGCCTGGACCTC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCACAGCGCACCAGCTGCTaGCAGAAGAGCAGACGGTGC +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAQRTSC*QKSRRC
Trigger: GCACCGTCTGCTCTTCTGCCAGCAGCTGGTGCGCTG...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAAGCCCGCTCACCTGCTaGGCCTGCTCCAGGAACTCC +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPSPLTC*ACSRNS
Trigger: GGAGTTCCTGGAGCAGGCCCAGCAGGTGAGCGGGCT...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCACCGCAGGGTCCTCCCTaGGCCTCTGGCGGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPPQGPP*ASGGRR
Trigger: TCTTCTACCGCCAGAGGCCCAGGGAGGACCCTGCGG...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAAATCTTGCCCGTGTCTaGCTTGGCCATGAGCCGGGG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMANLARV*LGHEPG
Trigger: CCCCGGCTCATGGCCAAGTCAGACACGGGCAAGATT...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGCAAGCTGGACTGCTTaGGCTTCTGGCAGATCCTCA +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIASWTA*ASGRSS
Trigger: TGAGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTGC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCACCAAAGAGAGGTCTGTaGAGGCTTCCTCCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPPKRGL*RLPPLR
Trigger: CCTCAAGGGAGGAAGCCTTCACAGACCTCTCTTTGG...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGTTGCAGCCCCCTGGTaGGCCTTCATCCTCATCTTT +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIVAAPW*AFILIF
Trigger: AAAGATGAGGATGAAGGCTCACCAGGGGGCTGCAAC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACGGCGCTCGCACACGGTaGGCAGGACCTCGCGCCGCA +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHGARTR*AGPRAA
Trigger: TGCGGCGCGAGGTCCTGCGCACCGTGTGCGAGCGCC...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAAGCTCCAATGGGAGGTaGTGGACCACGCTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMASSNGR*WTTLAK
Trigger: CTTGGCCAGCGTGGTCCAGCACCTCCCATTGGAGCT...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGAGGACACTCCAGAGTaGACCACCACACTACAGAGG +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPEDTPE*TTTLQR
Trigger: CCTCTGTAGTGTGGTGGTGCACTCTGGAGTGTCCTC...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTAGATATAAGCTGCCCTaGTCCGGGCCTCCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIRYKLP*SGPPSP
Trigger: AGGAGAAGGAGGCCCGGAGCAGGGCAGCTTATATCT...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCATGCCACCTGCAGGGTTaGAGCCCCCTGGTGAGCCTT +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPCHLQG*SPLVSL
Trigger: AAGGCTCACCAGGGGGCTGCAACCCTGCAGGTGGCA...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACGCCACGTGCAGCAACTaGCAGCCCACGCGGCGCGGC +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHATCSN*QPTRRG
Trigger: GCCGCGCCGCGTGGGCTGCCAGTTGCTGCACGTGGC...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTTCCAATGGGAGGTGCTaGACCACGCTGGCCAAGGCG +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSSNGRC*TTLAKA
Trigger: CGCCTTGGCCAGCGTGGTCCAGCACCTCCCATTGGA...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTTCTGAACAGTCTTGCTaGGTGCCAGGGCTGAACCAG +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRISEQSC*VPGLNQ
Trigger: CTGGTTCAGCCCTGGCACCCAGCAAGACTGTTCAGA...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGTGGCAGCCTCCCTATaGGTCCCTGGTCCTAAGCTG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAVAASL*VPGPKL
Trigger: CAGCTTAGGACCAGGGACCCATAGGGAGGCTGCCAC...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAAGTTCGAGTCCTCCTTaGCCAGAGAGGCCACCATGG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMASSSPP*PERPPW
Trigger: CCATGGTGGCCTCTCTGGTCAAGGAGGACTCGAACT...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGAGATGGCAGGCCTCTaGCTGTGCTCCAGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPEMAGL*LCSRKA
Trigger: TGCCTTCCTGGAGCACAGTCAGAGGCCTGCCATCTC...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGAAGGCTTCCTCCCTTaGGGAAACATTGAGGCAGTG +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIEGFLP*GNIEAV
Trigger: CACTGCCTCAATGTTTCCTCAAGGGAGGAAGCCTTC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACTCCCGCTCCAAGGGCTaGCGCGCGGCCTCCAGCACG +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDSRSKG*RAASST
Trigger: CGTGCTGGAGGCCGCGCGGCAGCCCTTGGAGCGGGA...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTAGCTCCAATGGGAGGTaGTGGACCACGCTGGCCAAG +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSSSNGR*WTTLAK
Trigger: CTTGGCCAGCGTGGTCCAGCACCTCCCATTGGAGCT...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCACTCTCCACCTTCTCCTaGCCACTCCGTCCACCAGTG +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPLSTFS*PLRPPV
Trigger: CACTGGTGGACGGAGTGGGCAGGAGAAGGTGGAGAG...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTCTCTCCACCTTCTCCTaGCCACTCCGTCCACCAGTG +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSLSTFS*PLRPPV
Trigger: CACTGGTGGACGGAGTGGGCAGGAGAAGGTGGAGAG...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAATCCATAAGCTCCAATaGGAGGTGCTGGACCACGCT +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPIHKLQ*EVLDHA
Trigger: AGCGTGGTCCAGCACCTCCCATTGGAGCTTATGGAT...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGGGGAGCTCTTCCTGTaGGGATGGCAAGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPGELFL*GWQAGL
Trigger: CAGTCCAGCTTGCCATCCCCACAGGAAGAGCTCCCC...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTGGGGAGCTCTTCCTGTaGGGATGGCAAGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSGELFL*GWQAGL
Trigger: CAGTCCAGCTTGCCATCCCCACAGGAAGAGCTCCCC...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTGAGGATGAGGTAGCGTaGACCCTGGCTCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSEDEVA*TLAQLH
Trigger: GTGGAGCTGAGCCAGGGTCCACGCTACCTCATCCTC...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCATCCATCAGGTCCTTGTaGAGGGTAGGCTCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMASIRSL*RVGSAR
Trigger: CCGAGCAGAGCCTACCCTCCACAAGGACCTGATGGA...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTAGTTCGAGTCCTCCTTaGCCAGAGAGGCCACCATGG +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSSSSPP*PERPPW
Trigger: CCATGGTGGCCTCTCTGGTCAAGGAGGACTCGAACT...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCACAGTTCACTCTTCTGTaGGGTCCAGGCATCCTGCCC +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPQFTLL*GPGILP
Trigger: GGGCAGGATGCCTGGACCTCACAGAAGAGTGAACTG...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCATGTCTGACTTGGCCATaGGCCGGGGATAGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPCLTWP*AGDRSQ
Trigger: CTGGCTTCTATCCCCGGCTCATGGCCAAGTCAGACA...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACGCTGGGTGCCAGGGCTaGACCAGGGCGTCCAGGACG +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDAGCQG*TRASRT
Trigger: CGTCCTGGACGCCCTGGTTCAGCCCTGGCACCCAGC...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCACCAAAGAGAGGTCTGTaGAGGCTTCCTCCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAPKRGL*RLPPLR
Trigger: CCTCAAGGGAGGAAGCCTTCACAGACCTCTCTTTGG...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCAGCGGCAGCTCCTCCGTaGCACCCACGTAGAGGCGCG +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPAAAPP*HPRRGA
Trigger: CGCGCCTCTACGTGGGTGGCACGGAGGAGCTGCCGC...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCATCCTGCCCCAGCAGCTaGTTGATTCGGTCCTCATTG +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMASCPSS*LIRSSL
Trigger: CAATGAGGACCGAATCAAGCAGCTGCTGGGGCAGGA...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAACCTTCTCCGCATCCTaGAGGGAGGCACAGGACTCA +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPTFSAS*REAQDS
Trigger: TGAGTCCTGTGCCTCCCTGCAGGATGCGGAGAAGGT...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACAAGACGTCGGGGTGGTaGCGACCCGCCACGTGCAGC +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHKTSGW*RPATCS
Trigger: GCTGCACGTGGCGGGTCGCCACCACCCCGACGTCTT...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAAGGCTCATACAGGTCTaGGAAGCCCGGGAACCGAAA +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMARLIQV*EAREPK
Trigger: TTTCGGTTCCCGGGCTTCCCAGACCTGTATGAGCCT...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCATCCTCATTGGGAATGTaGAGGTCCTTGATGGCTTCC +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPSSLGM*RSLMAS
Trigger: GGAAGCCATCAAGGACCTCCACATTCCCAATGAGGA...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGACTGCTTGAGCTTCTaGCAGATCCTCATCCCAGTT +
Preference number: 4 (lower is better)
Translates to: GHQADTTLAPELAGLSRIDCLSF*QILIPV
Trigger: AACTGGGATGAGGATCTGCCAGAAGCTCAAGCAGTC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGAAAGTCAGAAGCCATaGATAAGGCCTGAAGGACAC +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPESQKP*IRPEGH
Trigger: GTGTCCTTCAGGCCTTATTCATGGCTTCTGACTTTC...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGGGACAGGAAGTAGTTaGCCAAGTCCAGTACAGAGC +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAGTGSS*PSPVQS
Trigger: GCTCTGTACTGGACTTGGTCAACTACTTCCTGTCCC...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCATGGCGACCCGCCACGTaGAGCAACTGGCAGCCCACG +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPWRPAT*SNWQPT
Trigger: CGTGGGCTGCCAGTTGCTGCACGTGGCGGGTCGCCA...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACCTCACCTGCTGGGCCTaGTCCAGGAACTCCACCGCG +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHLTCWA*SRNSTA
Trigger: CGCGGTGGAGTTCCTGGAGCAGGCCCAGCAGGTGAG...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTGAGGACACTCCAGAGTaGACCACCACACTACAGAGG +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSEDTPE*TTTLQR
Trigger: CCTCTGTAGTGTGGTGGTGCACTCTGGAGTGTCCTC...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCACGCTGGCCAAGGCGCTaGACGGTGGCTCCTCCTCTG +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPRWPRR*TVAPPL
Trigger: CAGAGGAGGAGCCACCGTCCAGCGCCTTGGCCAGCG...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACGGTGCTGGACCACGCTaGCCAAGGCGCTGGACGGTG +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDGAGPR*PRRWTV
Trigger: CACCGTCCAGCGCCTTGGCCAGCGTGGTCCAGCACC...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGCCTCATGGGAGTGCTaGAAAGTCAGGAGCATGTAC +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAASWEC*KVRSMY
Trigger: GTACATGCTCCTGACTTTCCAGCACTCCCATGAGGC...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCATTGGTCATCAAGGGCTaGGAGTTGTTCTCAGTCAAG +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPLVIKG*ELFSVK
Trigger: CTTGACTGAGAACAACTCCCAGCCCTTGATGACCAA...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAAGCTGGACTaGTTGAGCTTCTGGCAGATC +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPDGKLD*LSFWQI
Trigger: GATCTGCCAGAAGCTCAAGCAGTCCAGCTTGCCATC...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACGTCACCATTGCCACCTaGAGGGTTGCAGCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHVTIAT*RVAAPW
Trigger: CCAGGGGGCTGCAACCCTGCAGGTGGCAATGGTGAC...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTGCCTCATGGGAGTGCTaGAAAGTCAGGAGCATGTAC +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSASWEC*KVRSMY
Trigger: GTACATGCTCCTGACTTTCCAGCACTCCCATGAGGC...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGACTGCTTGAGCTTCTaGCAGATCCTCATCCCAGTT +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMADCLSF*QILIPV
Trigger: AACTGGGATGAGGATCTGCCAGAAGCTCAAGCAGTC...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCACGCATGTCTGCTCCCTaGGTGGAGTGGCAGCCTCCC +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPRMSAP*VEWQPP
Trigger: GGGAGGCTGCCACTCCACCCAGGGAGCAGACATGCG...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTCGCATGTCTGCTCCCTaGGTGGAGTGGCAGCCTCCC +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLRMSAP*VEWQPP
Trigger: GGGAGGCTGCCACTCCACCCAGGGAGCAGACATGCG...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCATTAAACAGGTACCACTaGTTCTCAGGCTCAGGCCTC +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMALNRYH*FSGSGL
Trigger: GAGGCCTGAGCCTGAGAACCAGTGGTACCTGTTTAA...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAAGAGGACATTGTCTTTaGAAATGGCCTCCATCAGGT +
Preference number: 4 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPRGHCL*KWPPSG
Trigger: ACCTGATGGAGGCCATTTCCAAAGACAATGTCCTCT...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACAATCTTGCCCGTGTCTaGCTTGGCCATGAGCCGGGG +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHNLARV*LGHEPG
Trigger: CCCCGGCTCATGGCCAAGTCAGACACGGGCAAGATT...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp AGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGTTTTCTCTTCTTCATaGAGCCGATCCAGCAGGTAC +
Preference number: 4 (lower is better)
Translates to: RPASPWACLHSSLKPQMAVFSSS*SRSSRY
Trigger: GTACCTGCTGGATCGGCTTCATGAAGAAGAGAAAAC...TGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACTGCCACCTGCAGGGTTaGAGCCCCCTGGTGAGCCTT +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDCHLQG*SPLVSL
Trigger: AAGGCTCACCAGGGGGCTGCAACCCTGCAGGTGGCA...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACGTCACCATTGCCACCTaGAGGGTTGCAGCCCCCTGG +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDVTIAT*RVAAPW
Trigger: CCAGGGGGCTGCAACCCTGCAGGTGGCAATGGTGAC...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCACAGCGCACCAGCTGCTaGCAGAAGAGCAGACGGTGC +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPQRTSC*QKSRRC
Trigger: GCACCGTCTGCTCTTCTGCCAGCAGCTGGTGCGCTG...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCATCCAATGGGAGGTGCTaGACCACGCTGGCCAAGGCG +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPSNGRC*TTLAKA
Trigger: CGCCTTGGCCAGCGTGGTCCAGCACCTCCCATTGGA...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTGAGATGGCAGGCCTCTaGCTGTGCTCCAGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLEMAGL*LCSRKA
Trigger: TGCCTTCCTGGAGCACAGTCAGAGGCCTGCCATCTC...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTAGCTGGGTGCCAGGGCTaGACCAGGGCGTCCAGGACG +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILAGCQG*TRASRT
Trigger: CGTCCTGGACGCCCTGGTTCAGCCCTGGCACCCAGC...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTCGCTTCCTCTGCCTCTaGGCCCCGGGGGCTCTGGGA +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSRFLCL*APGALG
Trigger: TCCCAGAGCCCCCGGGGCGCAGAGGCAGAGGAAGCG...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTCTCCTCGCCCTCGGCTaGGCAGCGGAAGCGACCGAG +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSLLALG*AAEATE
Trigger: CTCGGTCGCTTCCGCTGCCCAGCCGAGGGCGAGGAG...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTTGTCTGCTCCCTGGGTaGAGTGGCAGCCTCCCTATG +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLCLLPG*SGSLPM
Trigger: CATAGGGAGGCTGCCACTCCACCCAGGGAGCAGACA...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACACCATGGCGGGAATGTaGGGGAGAAGCAGGTGGAAG +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDTMAGM*GRSRWK
Trigger: CTTCCACCTGCTTCTCCCTCACATTCCCGCCATGGT...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACGCCCCAGCAGCTGCTTaGTTCGGTCCTCATTGGGAA +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDAPAAA*FGPHWE
Trigger: TTCCCAATGAGGACCGAATCAAGCAGCTGCTGGGGC...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTGCCCCAGCAGCTGCTTaGTTCGGTCCTCATTGGGAA +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLAPAAA*FGPHWE
Trigger: TTCCCAATGAGGACCGAATCAAGCAGCTGCTGGGGC...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACGCAAGCTGGACTGCTTaGGCTTCTGGCAGATCCTCA +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHASWTA*ASGRSS
Trigger: TGAGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTGC...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTAAGCAGCGCCAGGCACTaGTCCCGCTCCAAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILSSARH*SRSKGC
Trigger: GCAGCCCTTGGAGCGGGAGCAGTGCCTGGCGCTGCT...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTTGGCGACCCGCCACGTaGAGCAACTGGCAGCCCACG +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSWRPAT*SNWQPT
Trigger: CGTGGGCTGCCAGTTGCTGCACGTGGCGGGTCGCCA...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACGAGGTCCAGGCATCCTaGCCCAGCAGCTGCTTGATT +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDEVQAS*PSSCLI
Trigger: AATCAAGCAGCTGCTGGGGCAGGATGCCTGGACCTC...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACAGATATAAGCTGCCCTaGTCCGGGCCTCCTTCTCCT +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHRYKLP*SGPPSP
Trigger: AGGAGAAGGAGGCCCGGAGCAGGGCAGCTTATATCT...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTACTCCTCGCCCTCGGCTaGGCAGCGGAAGCGACCGAG +
Preference number: 4 (lower is better)
Translates to: WKNSILHSLQRREFYSYLLLALG*AAEATE
Trigger: CTCGGTCGCTTCCGCTGCCCAGCCGAGGGCGAGGAG...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTAGGTGCTGGACCACGCTaGCCAAGGCGCTGGACGGTG +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILGAGPR*PRRWTV
Trigger: CACCGTCCAGCGCCTTGGCCAGCGTGGTCCAGCACC...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAAGACCTTCTCAATTTTaGCGAGCGAAACCTCGATCA +
Preference number: 4 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPRPSQF*RAKPRS
Trigger: TGATCGAGGTTTCGCTCGCCAAAATTGAGAAGGTCT...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACAGGTGGAAGGCCTCATaGGAGTGCTGGAAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHRWKAS*ECWKVR
Trigger: CCTGACTTTCCAGCACTCCCATGAGGCCTTCCACCT...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCCAGAGAGGCCACCATaGCGGGAATGTGAGGGAGAA +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDPERPP*RECEGE
Trigger: TTCTCCCTCACATTCCCGCCATGGTGGCCTCTCTGG...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTCCAGAGAGGCCACCATaGCGGGAATGTGAGGGAGAA +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLPERPP*RECEGE
Trigger: TTCTCCCTCACATTCCCGCCATGGTGGCCTCTCTGG...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTAGCGCCCCGGGGGCTCTaGGAGCCAGTGTCAACTCCT +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILAPRGL*EPVSTP
Trigger: AGGAGTTGACACTGGCTCCCAGAGCCCCCGGGGCGC...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTTCCATCAGGTCCTTGTaGAGGGTAGGCTCTGCTCGG +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLSIRSL*RVGSAR
Trigger: CCGAGCAGAGCCTACCCTCCACAAGGACCTGATGGA...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTAGAGGACATTGTCTTTaGAAATGGCCTCCATCAGGT +
Preference number: 4 (lower is better)
Translates to: SPWACLHSSLKPQMAECSRGHCL*KWPPSG
Trigger: ACCTGATGGAGGCCATTTCCAAAGACAATGTCCTCT...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCATCCTGCCCCAGCAGCTaGTTGATTCGGTCCTCATTG +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPSCPSS*LIRSSL
Trigger: CAATGAGGACCGAATCAAGCAGCTGCTGGGGCAGGA...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACTACTCTGAACAGTCTTaGTGGGTGCCAGGGCTGAAC +
Preference number: 4 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHYSEQS*WVPGLN
Trigger: GTTCAGCCCTGGCACCCAGCAAGACTGTTCAGAGTA...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACTGTGGAAGTCACCATTaGCACCTGCAGGGTTGCAGC +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDCGSHH*HLQGCS
Trigger: GCTGCAACCCTGCAGGTGGCAATGGTGACTTCCACA...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACAGGCTCATACAGGTCTaGGAAGCCCGGGAACCGAAA +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDRLIQV*EAREPK
Trigger: TTTCGGTTCCCGGGCTTCCCAGACCTGTATGAGCCT...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACAGAGCCACTGCAGCTTaGTCATCAAGGGCTGGGAGT +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDRATAA*SSRAGS
Trigger: ACTCCCAGCCCTTGATGACCAAGCTGCAGTGGCTCT...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTTCCCAGGACAGGAGCTaGCCGAGCAGCACCCTCACG +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSSQDRS*PSSTLT
Trigger: CGTGAGGGTGCTGCTCGGCCAGCTCCTGTCCTGGGA...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTGAAGGCTTCCTCCCTTaGGGAAACATTGAGGCAGTG +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLEGFLP*GNIEAV
Trigger: CACTGCCTCAATGTTTCCTCAAGGGAGGAAGCCTTC...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTACTCACCTGCTGGGCCTaGTCCAGGAACTCCACCGCG +
Preference number: 4 (lower is better)
Translates to: WKNSILHSLQRREFYSYLLTCWA*SRNSTA
Trigger: CGCGGTGGAGTTCCTGGAGCAGGCCCAGCAGGTGAG...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTAAGGCCTCATGGGAGTaGTGGAAAGTCAGGAGCATG +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLKASWE*WKVRSM
Trigger: CATGCTCCTGACTTTCCAGCACTCCCATGAGGCCTT...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCATACTCTGAACAGTCTTaGTGGGTGCCAGGGCTGAAC +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPYSEQS*WVPGLN
Trigger: GTTCAGCCCTGGCACCCAGCAAGACTGTTCAGAGTA...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCAGATGGCAAGCTGGACTaGTTGAGCTTCTGGCAGATC +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPDGKLD*LSFWQI
Trigger: GATCTGCCAGAAGCTCAAGCAGTCCAGCTTGCCATC...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTTGTAGAGATATAAGCTaGCCTGCTCCGGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLCRDIS*PAPGLL
Trigger: AAGGAGGCCCGGAGCAGGGCAGCTTATATCTCTACA...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACATCCATAAGCTCCAATaGGAGGTGCTGGACCACGCT +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDIHKLQ*EVLDHA
Trigger: AGCGTGGTCCAGCACCTCCCATTGGAGCTTATGGAT...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTCACTATCATCATTGCTaGGGTTCCGGACCACACCAT +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLHYHHC*GSGPHH
Trigger: ATGGTGTGGTCCGGAACCTCAGCAATGATGATAGTG...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TACAGACTGATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACTTAAACAGGTACCACTaGTTCTCAGGCTCAGGCCTC +
Preference number: 4 (lower is better)
Translates to: YRLISQMVPLHPPCPQKDLNRYH*FSGSGL
Trigger: GAGGCCTGAGCCTGAGAACCAGTGGTACCTGTTTAA...GTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATATCAGTCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTTGTCTGACTTGGCCATaGGCCGGGGATAGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSCLTWP*AGDRSQ
Trigger: CTGGCTTCTATCCCCGGCTCATGGCCAAGTCAGACA...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTGAAAGTCAGAAGCCATaGATAAGGCCTGAAGGACAC +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLESQKP*IRPEGH
Trigger: GTGTCCTTCAGGCCTTATTCATGGCTTCTGACTTTC...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTCGAAACACCATGCAGTaGACCAGCTCTGCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSRNTMQ*TSSASC
Trigger: GCAGCTGGCAGAGCTGGTGCACTGCATGGTGTTTCG...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCACCCCTTCCTTCTCCTTaGCATTCTCAGCTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPPLPSP*HSQLPF
Trigger: AAAAGGAAGCTGAGAATGGCAAGGAGAAGGAAGGGG...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTACCTTCTCCGCATCCTaGAGGGAGGCACAGGACTCA +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSTFSAS*REAQDS
Trigger: TGAGTCCTGTGCCTCCCTGCAGGATGCGGAGAAGGT...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTAGAGGATGAGGTAGCGTaGACCCTGGCTCAGCTCCAC +
Preference number: 4 (lower is better)
Translates to: WKNSILHSLQRREFYSYLEDEVA*TLAQLH
Trigger: GTGGAGCTGAGCCAGGGTCCACGCTACCTCATCCTC...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTAGTTGCAGCCCCCTGGTaGGCCTTCATCCTCATCTTT +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILVAAPW*AFILIF
Trigger: AAAGATGAGGATGAAGGCTCACCAGGGGGCTGCAAC...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTAGACCTTCTCAATTTTaGCGAGCGAAACCTCGATCA +
Preference number: 4 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLRPSQF*RAKPRS
Trigger: TGATCGAGGTTTCGCTCGCCAAAATTGAGAAGGTCT...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTATCTGAACAGTCTTGCTaGGTGCCAGGGCTGAACCAG +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILSEQSC*VPGLNQ
Trigger: CTGGTTCAGCCCTGGCACCCAGCAAGACTGTTCAGA...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTATGTAGAGATATAAGCTaGCCTGCTCCGGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILCRDIS*PAPGLL
Trigger: AAGGAGGCCCGGAGCAGGGCAGCTTATATCTCTACA...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTAAGGTGGAAGGCCTCATaGGAGTGCTGGAAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: WKNSILHSLQRREFYSYLRWKAS*ECWKVR
Trigger: CCTGACTTTCCAGCACTCCCATGAGGCCTTCCACCT...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTAAGAGCCACTGCAGCTTaGTCATCAAGGGCTGGGAGT +
Preference number: 4 (lower is better)
Translates to: WKNSILHSLQRREFYSYLRATAA*SSRAGS
Trigger: ACTCCCAGCCCTTGATGACCAAGCTGCAGTGGCTCT...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTACACTATCATCATTGCTaGGGTTCCGGACCACACCAT +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILHYHHC*GSGPHH
Trigger: ATGGTGTGGTCCGGAACCTCAGCAATGATGATAGTG...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTACCTTCAGCAGGGCAATaGTCCACTTGTCAATGTTCT +
Preference number: 4 (lower is better)
Translates to: HPHACKTQQVQTLIYLILPSAGQ*STCQCS
Trigger: AGAACATTGACAAGTGGATCATTGCCCTGCTGAAGG...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTTTGGTCATCAAGGGCTaGGAGTTGTTCTCAGTCAAG +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSLVIKG*ELFSVK
Trigger: CTTGACTGAGAACAACTCCCAGCCCTTGATGACCAA...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR TCA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTAGTTTTCTCTTCTTCATaGAGCCGATCCAGCAGGTAC +
Preference number: 4 (lower is better)
Translates to: WKNSILHSLQRREFYSYLVFSSS*SRSSRY
Trigger: GTACCTGCTGGATCGGCTTCATGAAGAAGAGAAAAC...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR GCA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTACCCCTTCCTTCTCCTTaGCATTCTCAGCTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: WKNSILHSLQRREFYSYLPLPSP*HSQLPF
Trigger: AAAAGGAAGCTGAGAATGGCAAGGAGAAGGAAGGGG...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CCA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTCATTGTCTTTGGAAATaGCCTCCATCAGGTCCTTGT +
Preference number: 4 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSHCLWK*PPSGPC
Trigger: ACAAGGACCTGATGGAGGCCATTTCCAAAGACAATG...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 90 bp AGCAGCGCGAACACCTCGTCCGCCGCGGGCCCGTCGGGCAGCAGCTaGAGCCCTAGCTGCACACAGGCCAGCGCGCGCGCCCCCGGGGGC +
Preference number: 5 (lower is better)
Translates to: SSANTSSAAGPSGSS*SPSCTQASARAPGG
Trigger: GCCCCCGGGGGCGCGCGCGCTGGCCTGTGTGCAGCTAGGGCTGCAGCTGCTGCCCGACGGGCCCGCGGCGGACGAGGTGTTCGCGCTGCT
79% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 90 bp CCACGTGCAGCAACTGGCAGCCCACGCGGCGCGGCAGCTCCTCCGTaGCACCCACGTAGAGGCGCGCGCCCAGGGCCAGCAGCGCCAGGC +
Preference number: 5 (lower is better)
Translates to: PRAATGSPRGAAAPP*HPRRGARPGPAAPG
Trigger: GCCTGGCGCTGCTGGCCCTGGGCGCGCGCCTCTACGTGGGTGGCACGGAGGAGCTGCCGCGCCGCGTGGGCTGCCAGTTGCTGCACGTGG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 90 bp TGCACACAGGCCAGCGCGCGCGCCCCCGGGGGCCCTGCACCGCCCTaGAGCAGGCGCAGCACGCGGCGCGCACTGAAGAACTCGGCGAAG +
Preference number: 5 (lower is better)
Translates to: CTQASARAPGGPAPP*SRRSTRRALKNSAK
Trigger: CTTCGCCGAGTTCTTCAGTGCGCGCCGCGTGCTGCGCCTGCTGCAGGGCGGTGCAGGGCCCCCGGGGGCGCGCGCGCTGGCCTGTGTGCA
77% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS TCA 90 bp GGGGCCCTGCACCGCCCTGCAGCAGGCGCAGCACGCGGCGCGCACTaGAGAACTCGGCGAAGACGTCGGGGTGGTGGCGACCCGCCACGT +
Preference number: 5 (lower is better)
Translates to: GALHRPAAGAARGAH*RTRRRRRGGGDPPR
Trigger: ACGTGGCGGGTCGCCACCACCCCGACGTCTTCGCCGAGTTCTTCAGTGCGCGCCGCGTGCTGCGCCTGCTGCAGGGCGGTGCAGGGCCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp CGCAGCACGCGGCGCGCACTGAAGAACTCGGCGAAGACGTCGGGGTaGTGGCGACCCGCCACGTGCAGCAACTGGCAGCCCACGCGGCGC +
Preference number: 5 (lower is better)
Translates to: RSTRRALKNSAKTSG*WRPATCSNWQPTRR
Trigger: GCGCCGCGTGGGCTGCCAGTTGCTGCACGTGGCGGGTCGCCACCACCCCGACGTCTTCGCCGAGTTCTTCAGTGCGCGCCGCGTGCTGCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 90 bp CTGAAGAACTCGGCGAAGACGTCGGGGTGGTGGCGACCCGCCACGTaGAGCAACTGGCAGCCCACGCGGCGCGGCAGCTCCTCCGTGCCA +
Preference number: 5 (lower is better)
Translates to: LKNSAKTSGWWRPAT*SNWQPTRRGSSSVP
Trigger: TGGCACGGAGGAGCTGCCGCGCCGCGTGGGCTGCCAGTTGCTGCACGTGGCGGGTCGCCACCACCCCGACGTCTTCGCCGAGTTCTTCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp GGGCTCTGGGAGCCAGTGTCAACTCCTGGACTCGCACATCCTCCGTaGGGAGCATCACGGAGCCGAGGCGGCGGTGGCGACTTCTCTCAG +
Preference number: 5 (lower is better)
Translates to: GLWEPVSTPGLAHPP*GASRSRGGGGDFSQ
Trigger: CTGAGAGAAGTCGCCACCGCCGCCTCGGCTCCGTGATGCTCCCCACGGAGGATGTGCGAGTCCAGGAGTTGACACTGGCTCCCAGAGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTTTGCCACCTGCAGGGTaGCAGCCCCCTGGTGAGCCT +
Preference number: 5 (lower is better)
Translates to: GHQADTTLAPELAGLSRILPPAG*QPPGEP
Trigger: AGGCTCACCAGGGGGCTGCAACCCTGCAGGTGGCAA...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp AGTCCAGTACAGAGCGGGAACCCTCAGGGCCGCATGTCTGCTCCCTaGGTGGAGTGGCAGCCTCCCTATGGGTCCCTGGTCCTAAGCTGT +
Preference number: 5 (lower is better)
Translates to: SPVQSGNPQGRMSAP*VEWQPPYGSLVLSC
Trigger: ACAGCTTAGGACCAGGGACCCATAGGGAGGCTGCCACTCCACCCAGGGAGCAGACATGCGGCCCTGAGGGTTCCCGCTCTGTACTGGACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 90 bp TTGCTGAGGTTCCGGACCACACCATCCATAAGCTCCAATGGGAGGTaGTGGACCACGCTGGCCAAGGCGCTGGACGGTGGCTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: LLRFRTTPSISSNGR*WTTLAKALDGGSSS
Trigger: AGAGGAGGAGCCACCGTCCAGCGCCTTGGCCAGCGTGGTCCAGCACCTCCCATTGGAGCTTATGGATGGTGTGGTCCGGAACCTCAGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 90 bp GGCTCATACAGGTCTGGGAAGCCCGGGAACCGAAACACCATGCAGTaGACCAGCTCTGCCAGCTGCTCCAGGCAGCTGGTCCCAGAGTTC +
Preference number: 5 (lower is better)
Translates to: GSYRSGKPGNRNTMQ*TSSASCSRQLVPEF
Trigger: GAACTCTGGGACCAGCTGCCTGGAGCAGCTGGCAGAGCTGGTGCACTGCATGGTGTTTCGGTTCCCGGGCTTCCCAGACCTGTATGAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp CTGAGGTTCCGGACCACACCATCCATAAGCTCCAATGGGAGGTGCTaGACCACGCTGGCCAAGGCGCTGGACGGTGGCTCCTCCTCTGTA +
Preference number: 5 (lower is better)
Translates to: LRFRTTPSISSNGRC*TTLAKALDGGSSSV
Trigger: TACAGAGGAGGAGCCACCGTCCAGCGCCTTGGCCAGCGTGGTCCAGCACCTCCCATTGGAGCTTATGGATGGTGTGGTCCGGAACCTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGAGTTCGAGTCCTCCTaGACCAGAGAGGCCACCATG +
Preference number: 5 (lower is better)
Translates to: GHQADTTLAPELAGLSRIEFESS*TREATM
Trigger: CATGGTGGCCTCTCTGGTCAAGGAGGACTCGAACTC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCATGCCCCAGCAGCTGCTaGATTCGGTCCTCATTGGGA +
Preference number: 5 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPCPSSC*IRSSLG
Trigger: TCCCAATGAGGACCGAATCAAGCAGCTGCTGGGGCA...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp ACACAGGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAAAGAGCCACTGCAGCTaGGTCATCAAGGGCTGGGAG +
Preference number: 5 (lower is better)
Translates to: TQDTKLTPPWLPSWLAFPKSHCS*VIKGWE
Trigger: CTCCCAGCCCTTGATGACCAAGCTGCAGTGGCTCTT...TGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCCTGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTCTGTGGAAGTCACCATaGCCACCTGCAGGGTTGCAG +
Preference number: 5 (lower is better)
Translates to: GHQADTTLAPELAGLSRILWKSP*PPAGLQ
Trigger: CTGCAACCCTGCAGGTGGCAATGGTGACTTCCACAG...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp ATCATCATTGCTGAGGTTCCGGACCACACCATCCATAAGCTCCAATaGGAGGTGCTGGACCACGCTGGCCAAGGCGCTGGACGGTGGCTC +
Preference number: 5 (lower is better)
Translates to: IIIAEVPDHTIHKLQ*EVLDHAGQGAGRWL
Trigger: GAGCCACCGTCCAGCGCCTTGGCCAGCGTGGTCCAGCACCTCCCATTGGAGCTTATGGATGGTGTGGTCCGGAACCTCAGCAATGATGAT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp CTGGTTCTCAGGCTCAGGCCTCTCTGTGGATCCCAGGACAGGAGCTaGCCGAGCAGCACCCTCACGAGCATAGCAGTAATAGTGGCCACT +
Preference number: 5 (lower is better)
Translates to: LVLRLRPLCGSQDRS*PSSTLTSIAVIVAT
Trigger: AGTGGCCACTATTACTGCTATGCTCGTGAGGGTGCTGCTCGGCCAGCTCCTGTCCTGGGATCCACAGAGAGGCCTGAGCCTGAGAACCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTGGAATGTGGAGGTCCTaGATGGCTTCCATGACAGGC +
Preference number: 5 (lower is better)
Translates to: GHQADTTLAPELAGLSRIGMWRS*MASMTG
Trigger: GCCTGTCATGGAAGCCATCAAGGACCTCCACATTCC...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp CTCCACCGACGTTGCATTGGAGCTGGGGAGCTCTTCCTGTGGGGATaGCAAGCTGGACTGCTTGAGCTTCTGGCAGATCCTCATCCCAGT +
Preference number: 5 (lower is better)
Translates to: LHRRCIGAGELFLWG*QAGLLELLADPHPS
Trigger: ACTGGGATGAGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTGCCATCCCCACAGGAAGAGCTCCCCAGCTCCAATGCAACGTCGGTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp GGGTCACAATCTTGCCTCCGAACATCTTCTCCACCGACGTTGCATTaGAGCTGGGGAGCTCTTCCTGTGGGGATGGCAAGCTGGACTGCT +
Preference number: 5 (lower is better)
Translates to: GSQSCLRTSSPPTLH*SWGALPVGMASWTA
Trigger: AGCAGTCCAGCTTGCCATCCCCACAGGAAGAGCTCCCCAGCTCCAATGCAACGTCGGTGGAGAAGATGTTCGGAGGCAAGATTGTGACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTAAGAGCCACTGCAGCTaGGTCATCAAGGGCTGGGAG +
Preference number: 5 (lower is better)
Translates to: SPWACLHSSLKPQMAECSKSHCS*VIKGWE
Trigger: CTCCCAGCCCTTGATGACCAAGCTGCAGTGGCTCTT...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCACTGTGGAAGTCACCATaGCCACCTGCAGGGTTGCAG +
Preference number: 5 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPLWKSP*PPAGLQ
Trigger: CTGCAACCCTGCAGGTGGCAATGGTGACTTCCACAG...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS TCA 90 bp GCAGGTACTTCAGATACTCTGAACAGTCTTGCTGGGTGCCAGGGCTaGACCAGGGCGTCCAGGACGCAGAGAGGAAGTTCTCAGGAGAGA +
Preference number: 5 (lower is better)
Translates to: AGTSDTLNSLAGCQG*TRASRTQRGSSQER
Trigger: TCTCTCCTGAGAACTTCCTCTCTGCGTCCTGGACGCCCTGGTTCAGCCCTGGCACCCAGCAAGACTGTTCAGAGTATCTGAAGTACCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 90 bp TATCCGGGTCACAATCTTGCCTCCGAACATCTTCTCCACCGACGTTaGATTGGAGCTGGGGAGCTCTTCCTGTGGGGATGGCAAGCTGGA +
Preference number: 5 (lower is better)
Translates to: YPGHNLASEHLLHRR*IGAGELFLWGWQAG
Trigger: TCCAGCTTGCCATCCCCACAGGAAGAGCTCCCCAGCTCCAATGCAACGTCGGTGGAGAAGATGTTCGGAGGCAAGATTGTGACCCGGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp AATGTGGAGGTCCTTGATGGCTTCCATGACAGGCTCATACAGGTCTaGGAAGCCCGGGAACCGAAACACCATGCAGTGCACCAGCTCTGC +
Preference number: 5 (lower is better)
Translates to: NVEVLDGFHDRLIQV*EAREPKHHAVHQLC
Trigger: GCAGAGCTGGTGCACTGCATGGTGTTTCGGTTCCCGGGCTTCCCAGACCTGTATGAGCCTGTCATGGAAGCCATCAAGGACCTCCACATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp CATCTTCTCCACCGACGTTGCATTGGAGCTGGGGAGCTCTTCCTGTaGGGATGGCAAGCTGGACTGCTTGAGCTTCTGGCAGATCCTCAT +
Preference number: 5 (lower is better)
Translates to: HLLHRRCIGAGELFL*GWQAGLLELLADPH
Trigger: ATGAGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTGCCATCCCCACAGGAAGAGCTCCCCAGCTCCAATGCAACGTCGGTGGAGAAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTTTAATTAAGCCAATCTaGCCCGTGTCTGACTTGGCC +
Preference number: 5 (lower is better)
Translates to: GHQADTTLAPELAGLSRILIKPI*PVSDLA
Trigger: GGCCAAGTCAGACACGGGCAAGATTGGCTTAATTAA...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp GGACACCAAGCTGACACCACCCTGGCTCCCGAGCTGGCTGGCCTTTCCAGGATTCCTTCATCCTCATCTTaGTCTTCATCGAAGCCCCTA +
Preference number: 5 (lower is better)
Translates to: GHQADTTLAPELAGLSRIPSSSS*SSSKPL
Trigger: TAGGGGCTTCGATGAAGACAAAGATGAGGATGAAGG...AATCCTGGAAAGGCCAGCCAGCTCGGGAGCCAGGGTGGTGTCAGCTTGGTGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp TCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAGATGGCAGAGTGTTCTGTCACACTATCATCATaGCTGAGGTTCCGGACCACA +
Preference number: 5 (lower is better)
Translates to: SPWACLHSSLKPQMAECSVTLSS*LRFRTT
Trigger: TGTGGTCCGGAACCTCAGCAATGATGATAGTGTGAC...AGAACACTCTGCCATCTGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCATTAATTAAGCCAATCTaGCCCGTGTCTGACTTGGCC +
Preference number: 5 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPLIKPI*PVSDLA
Trigger: GGCCAAGTCAGACACGGGCAAGATTGGCTTAATTAA...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACGGCAAGCTGGACTGCTaGAGCTTCTGGCAGATCCTC +
Preference number: 5 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHGKLDC*SFWQIL
Trigger: GAGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTGCC...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 90 bp GAGAGGTCTGTGAAGGCTTCCTCCCTTGAGGAAACATTGAGGCAGTaGAGACAGCATATCCGGGTCACAATCTTGCCTCCGAACATCTTC +
Preference number: 5 (lower is better)
Translates to: ERSVKASSLEETLRQ*RQHIRVTILPPNIF
Trigger: GAAGATGTTCGGAGGCAAGATTGTGACCCGGATATGCTGTCTCCACTGCCTCAATGTTTCCTCAAGGGAGGAAGCCTTCACAGACCTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTGAGTTCGAGTCCTCCTaGACCAGAGAGGCCACCATG +
Preference number: 5 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLEFESS*TREATM
Trigger: CATGGTGGCCTCTCTGGTCAAGGAGGACTCGAACTC...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp AGTGAAGGATCTAGAAAGAAGTGCTACTGGACACAGGACACCAAGCTGACACCAGGCAAGCTGGACTGCTaGAGCTTCTGGCAGATCCTC +
Preference number: 5 (lower is better)
Translates to: SEGSRKKCYWTQDTKLTPGKLDC*SFWQIL
Trigger: GAGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTGCC...TGGTGTCAGCTTGGTGTCCTGTGTCCAGTAGCACTTCTTTCTAGATCCTTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CTCAGAAAGACCTGCTTCACCCTGGGCTTGCCTCCACAGCTCCCTAAAACCCCAAAGAAGGAGGTGACATaGCTGACAGACTCAAAGGAT +
Preference number: 5 (lower is better)
Translates to: LRKTCFTLGLPPQLPKTPKKEVT*LTDSKD
Trigger: ATCCTTTGAGTCTGTCAGCAATGTCACCTCCTTCTT...TGGGGTTTTAGGGAGCTGTGGAGGCAAGCCCAGGGTGAAGCAGGTCTTTCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTTTGCCACCTGCAGGGTaGCAGCCCCCTGGTGAGCCT +
Preference number: 5 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSLPPAG*QPPGEP
Trigger: AGGCTCACCAGGGGGCTGCAACCCTGCAGGTGGCAA...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACTCCCTTGAGGAAACATaGAGGCAGTGGAGACAGCAT +
Preference number: 5 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHSLEET*RQWRQH
Trigger: ATGCTGTCTCCACTGCCTCAATGTTTCCTCAAGGGA...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp GCCTTCCATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTAGGGCAATGATCCACTaGTCAATGTTCTTCCCCAGG +
Preference number: 5 (lower is better)
Translates to: AFHPHACKTQQVQTLIYLRAMIH*SMFFPR
Trigger: CCTGGGGAAGAACATTGACAAGTGGATCATTGCCCT...AAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATGGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTTGCCCCAGCAGCTGCTaGATTCGGTCCTCATTGGGA +
Preference number: 5 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSCPSSC*IRSSLG
Trigger: TCCCAATGAGGACCGAATCAAGCAGCTGCTGGGGCA...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp ATATCCCAAATGGTCCCTCTTCATCCTCCTTGCCCTCAGAAAGACCTGCTTCACAAGAAGGAGGTGACATaGCTGACAGACTCAAAGGAT +
Preference number: 5 (lower is better)
Translates to: ISQMVPLHPPCPQKDLLHKKEVT*LTDSKD
Trigger: ATCCTTTGAGTCTGTCAGCAATGTCACCTCCTTCTT...GTGAAGCAGGTCTTTCTGAGGGCAAGGAGGATGAAGAGGGACCATTTGGGATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTAGGAATGTGGAGGTCCTaGATGGCTTCCATGACAGGC +
Preference number: 5 (lower is better)
Translates to: HPHACKTQQVQTLIYLILGMWRS*MASMTG
Trigger: GCCTGTCATGGAAGCCATCAAGGACCTCCACATTCC...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTGTCACACTATCATCATaGCTGAGGTTCCGGACCACA +
Preference number: 5 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSVTLSS*LRFRTT
Trigger: TGTGGTCCGGAACCTCAGCAATGATGATAGTGTGAC...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTATCCCTTGAGGAAACATaGAGGCAGTGGAGACAGCAT +
Preference number: 5 (lower is better)
Translates to: HPHACKTQQVQTLIYLILSLEET*RQWRQH
Trigger: ATGCTGTCTCCACTGCCTCAATGTTTCCTCAAGGGA...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp TGGAAGAACAGCATCCTGCACAGCCTTCAGAGAAGAGAATTTTATTCCTATTTAAGGGCAATGATCCACTaGTCAATGTTCTTCCCCAGG +
Preference number: 5 (lower is better)
Translates to: WKNSILHSLQRREFYSYLRAMIH*SMFFPR
Trigger: CCTGGGGAAGAACATTGACAAGTGGATCATTGCCCT...TAAATAGGAATAAAATTCTCTTCTCTGAAGGCTGTGCAGGATGCTGTTCTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CATCCACATGCCTGTAAAACACAGCAGGTGCAGACACTCATATACCTTATTTTAAAGACCTTCTCAATTTaGGCGAGCGAAACCTCGATC +
Preference number: 5 (lower is better)
Translates to: HPHACKTQQVQTLIYLILKTFSI*ASETSI
Trigger: GATCGAGGTTTCGCTCGCCAAAATTGAGAAGGTCTT...TAAAATAAGGTATATGAGTGTCTGCACCTGCTGTGTTTTACAGGCATGTGGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS-3UTR CAA 90 bp CTTGACTTCAACTGTGACTTTTCTCCTATTGAGAAAGAGCTGAGTGAAGGATCTCCTTCATCCTCATCTTaGTCTTCATCGAAGCCCCTA +
Preference number: 5 (lower is better)
Translates to: LDFNCDFSPIEKELSEGSPSSSS*SSSKPL
Trigger: TAGGGGCTTCGATGAAGACAAAGATGAGGATGAAGG...AGATCCTTCACTCAGCTCTTTCTCAATAGGAGAAAAGTCACAGTTGAAGTCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 72 bp GCAACTGGCAGCCCACGCGGCGCGGCAGCTCCTCCGTaGCACCCACGTAGAGGCGCGCGCCCAGGGCCAGCA +
Preference number: 6 (lower is better)
Translates to: ATGSPRGAAAPP*HPRRGARPGPA
Trigger: TGCTGGCCCTGGGCGCGCGCCTCTACGTGGGTGGCACGGAGGAGCTGCCGCGCCGCGTGGGCTGCCAGTTGC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 72 bp TCGGCGAAGACGTCGGGGTGGTGGCGACCCGCCACGTaGAGCAACTGGCAGCCCACGCGGCGCGGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: SAKTSGWWRPAT*SNWQPTRRGSS
Trigger: GGAGCTGCCGCGCCGCGTGGGCTGCCAGTTGCTGCACGTGGCGGGTCGCCACCACCCCGACGTCTTCGCCGA
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp ACGTCGGGGTGGTGGCGACCCGCCACGTGCAGCAACTaGCAGCCCACGCGGCGCGGCAGCTCCTCCGTGCCA +
Preference number: 6 (lower is better)
Translates to: TSGWWRPATCSN*QPTRRGSSSVP
Trigger: TGGCACGGAGGAGCTGCCGCGCCGCGTGGGCTGCCAGTTGCTGCACGTGGCGGGTCGCCACCACCCCGACGT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 72 bp CACAGCTGCGCCAGGAGCCCGCTCACCTGCTGGGCCTaGTCCAGGAACTCCACCGCGCCCTCCTCGCCCTCG +
Preference number: 6 (lower is better)
Translates to: HSCARSPLTCWA*SRNSTAPSSPS
Trigger: CGAGGGCGAGGAGGGCGCGGTGGAGTTCCTGGAGCAGGCCCAGCAGGTGAGCGGGCTCCTGGCGCAGCTGTG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp CTCCAGGAACTCCACCGCGCCCTCCTCGCCCTCGGCTaGGCAGCGGAAGCGACCGAGGCAGCGCACCAGCTG +
Preference number: 6 (lower is better)
Translates to: LQELHRALLALG*AAEATEAAHQL
Trigger: CAGCTGGTGCGCTGCCTCGGTCGCTTCCGCTGCCCAGCCGAGGGCGAGGAGGGCGCGGTGGAGTTCCTGGAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp GGGCAGCGGAAGCGACCGAGGCAGCGCACCAGCTGCTaGCAGAAGAGCAGACGGTGCGCGCCGTCGGGTACG +
Preference number: 6 (lower is better)
Translates to: GQRKRPRQRTSC*QKSRRCAPSGT
Trigger: CGTACCCGACGGCGCGCACCGTCTGCTCTTCTGCCAGCAGCTGGTGCGCTGCCTCGGTCGCTTCCGCTGCCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp CGGCGCGCACTGAAGAACTCGGCGAAGACGTCGGGGTaGTGGCGACCCGCCACGTGCAGCAACTGGCAGCCC +
Preference number: 6 (lower is better)
Translates to: RRALKNSAKTSG*WRPATCSNWQP
Trigger: GGGCTGCCAGTTGCTGCACGTGGCGGGTCGCCACCACCCCGACGTCTTCGCCGAGTTCTTCAGTGCGCGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 90 bp CTCCAAGGGCTGCCGCGCGGCCTCCAGCACGCGCCGCACCAGCCCTaGCTTCACACTCGCAGGGTAGGACGAAGTCACCACGGCCTCCAG +
Preference number: 6 (lower is better)
Translates to: LQGLPRGLQHAPHQP*LHTRRVGRSHHGLQ
Trigger: CTGGAGGCCGTGGTGACTTCGTCCTACCCTGCGAGTGTGAAGCAAGGGCTGGTGCGGCGCGTGCTGGAGGCCGCGCGGCAGCCCTTGGAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 72 bp CTGCCGCGCGGCCTCCAGCACGCGCCGCACCAGCCCTaGCTTCACACTCGCAGGGTAGGACGAAGTCACCAC +
Preference number: 6 (lower is better)
Translates to: LPRGLQHAPHQP*LHTRRVGRSHH
Trigger: GTGGTGACTTCGTCCTACCCTGCGAGTGTGAAGCAAGGGCTGGTGCGGCGCGTGCTGGAGGCCGCGCGGCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp GAGCCAGTGTCAACTCCTGGACTCGCACATCCTCCGTaGGGAGCATCACGGAGCCGAGGCGGCGGTGGCGAC +
Preference number: 6 (lower is better)
Translates to: EPVSTPGLAHPP*GASRSRGGGGD
Trigger: GTCGCCACCGCCGCCTCGGCTCCGTGATGCTCCCCACGGAGGATGTGCGAGTCCAGGAGTTGACACTGGCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 90 bp GACGGTGGCTCCTCCTCTGTACAGGAGATGACAGCGAACAGCTCCTaGAGGCAGGGAAGGATGGCGGCGGGCTGCGCGCGCCACAGCTGC +
Preference number: 6 (lower is better)
Translates to: DGGSSSVQEMTANSS*RQGRMAAGCARHSC
Trigger: GCAGCTGTGGCGCGCGCAGCCCGCCGCCATCCTTCCCTGCCTCAAGGAGCTGTTCGCTGTCATCTCCTGTACAGAGGAGGAGCCACCGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp CGGACCACACCATCCATAAGCTCCAATGGGAGGTGCTaGACCACGCTGGCCAAGGCGCTGGACGGTGGCTCC +
Preference number: 6 (lower is better)
Translates to: RTTPSISSNGRC*TTLAKALDGGS
Trigger: GGAGCCACCGTCCAGCGCCTTGGCCAGCGTGGTCCAGCACCTCCCATTGGAGCTTATGGATGGTGTGGTCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 72 bp TTCCGGACCACACCATCCATAAGCTCCAATGGGAGGTaGTGGACCACGCTGGCCAAGGCGCTGGACGGTGGC +
Preference number: 6 (lower is better)
Translates to: FRTTPSISSNGR*WTTLAKALDGG
Trigger: GCCACCGTCCAGCGCCTTGGCCAGCGTGGTCCAGCACCTCCCATTGGAGCTTATGGATGGTGTGGTCCGGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 72 bp AGGTCTGGGAAGCCCGGGAACCGAAACACCATGCAGTaGACCAGCTCTGCCAGCTGCTCCAGGCAGCTGGTC +
Preference number: 6 (lower is better)
Translates to: RSGKPGNRNTMQ*TSSASCSRQLV
Trigger: GACCAGCTGCCTGGAGCAGCTGGCAGAGCTGGTGCACTGCATGGTGTTTCGGTTCCCGGGCTTCCCAGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 72 bp CCCTCTCCACCTTCTCCTGCCCACTCCGTCCACCAGTaGCTATGGTGTCCACACCTTCACTGTCCAGCCCAG +
Preference number: 6 (lower is better)
Translates to: PSPPSPAHSVHQ*LWCPHLHCPAQ
Trigger: CTGGGCTGGACAGTGAAGGTGTGGACACCATAGGCACTGGTGGACGGAGTGGGCAGGAGAAGGTGGAGAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp GCTGAGGTTCCGGACCACACCATCCATAAGCTCCAATaGGAGGTGCTGGACCACGCTGGCCAAGGCGCTGGA +
Preference number: 6 (lower is better)
Translates to: AEVPDHTIHKLQ*EVLDHAGQGAG
Trigger: TCCAGCGCCTTGGCCAGCGTGGTCCAGCACCTCCCATTGGAGCTTATGGATGGTGTGGTCCGGAACCTCAGC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp CCACCTTCTCCTGCCCACTCCGTCCACCAGTGCCTATaGTGTCCACACCTTCACTGTCCAGCCCAGTGCGAG +
Preference number: 6 (lower is better)
Translates to: PPSPAHSVHQCL*CPHLHCPAQCE
Trigger: CTCGCACTGGGCTGGACAGTGAAGGTGTGGACACCATAGGCACTGGTGGACGGAGTGGGCAGGAGAAGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS TCA 72 bp TCCTCCTTGACCAGAGAGGCCACCATGGCGGGAATGTaGGGGAGAAGCAGGTGGAAGGCCTCATGGGAGTGC +
Preference number: 6 (lower is better)
Translates to: SSLTREATMAGM*GRSRWKASWEC
Trigger: GCACTCCCATGAGGCCTTCCACCTGCTTCTCCCTCACATTCCCGCCATGGTGGCCTCTCTGGTCAAGGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS TCA 72 bp GAGCCGGGGATAGAAGCCAGCCAGTTCACTCTTCTGTaGGGTCCAGGCATCCTGCCCCAGCAGCTGCTTGAT +
Preference number: 6 (lower is better)
Translates to: EPGIEASQFTLL*GPGILPQQLLD
Trigger: ATCAAGCAGCTGCTGGGGCAGGATGCCTGGACCTCACAGAAGAGTGAACTGGCTGGCTTCTATCCCCGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp CACCGACGTTGCATTGGAGCTGGGGAGCTCTTCCTGTaGGGATGGCAAGCTGGACTGCTTGAGCTTCTGGCA +
Preference number: 6 (lower is better)
Translates to: HRRCIGAGELFL*GWQAGLLELLA
Trigger: TGCCAGAAGCTCAAGCAGTCCAGCTTGCCATCCCCACAGGAAGAGCTCCCCAGCTCCAATGCAACGTCGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 90 bp CGGGTCACAATCTTGCCTCCGAACATCTTCTCCACCGACGTTGCATaGGAGCTGGGGAGCTCTTCCTGTGGGGATGGCAAGCTGGACTGC +
Preference number: 6 (lower is better)
Translates to: RVTILPPNIFSTDVA*ELGSSSCGDGKLDC
Trigger: GCAGTCCAGCTTGCCATCCCCACAGGAAGAGCTCCCCAGCTCCAATGCAACGTCGGTGGAGAAGATGTTCGGAGGCAAGATTGTGACCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 72 bp CTCTTCTGTGAGGTCCAGGCATCCTGCCCCAGCAGCTaGTTGATTCGGTCCTCATTGGGAATGTGGAGGTCC +
Preference number: 6 (lower is better)
Translates to: LFCEVQASCPSS*LIRSSLGMWRS
Trigger: GGACCTCCACATTCCCAATGAGGACCGAATCAAGCAGCTGCTGGGGCAGGATGCCTGGACCTCACAGAAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS GCA 72 bp CGATCCAGCAGGTACTTCAGATACTCTGAACAGTCTTaGTGGGTGCCAGGGCTGAACCAGGGCGTCCAGGAC +
Preference number: 6 (lower is better)
Translates to: RSSRYFRYSEQS*WVPGLNQGVQD
Trigger: GTCCTGGACGCCCTGGTTCAGCCCTGGCACCCAGCAAGACTGTTCAGAGTATCTGAAGTACCTGCTGGATCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp GCGTCCAGGACGCAGAGAGGAAGTTCTCAGGAGAGATaGCAGGCCTCTGACTGTGCTCCAGGAAGGCAAAGA +
Preference number: 6 (lower is better)
Translates to: ASRTQRGSSQER*QASDCAPGRQR
Trigger: TCTTTGCCTTCCTGGAGCACAGTCAGAGGCCTGCCATCTCTCCTGAGAACTTCCTCTCTGCGTCCTGGACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp TCCAGCAGGTACTTCAGATACTCTGAACAGTCTTGCTaGGTGCCAGGGCTGAACCAGGGCGTCCAGGACGCA +
Preference number: 6 (lower is better)
Translates to: SSRYFRYSEQSC*VPGLNQGVQDA
Trigger: TGCGTCCTGGACGCCCTGGTTCAGCCCTGGCACCCAGCAAGACTGTTCAGAGTATCTGAAGTACCTGCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp TCTTGCCTCCGAACATCTTCTCCACCGACGTTGCATTaGAGCTGGGGAGCTCTTCCTGTGGGGATGGCAAGC +
Preference number: 6 (lower is better)
Translates to: SCLRTSSPPTLH*SWGALPVGMAS
Trigger: GCTTGCCATCCCCACAGGAAGAGCTCCCCAGCTCCAATGCAACGTCGGTGGAGAAGATGTTCGGAGGCAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 90 bp ATATCCGGGTCACAATCTTGCCTCCGAACATCTTCTCCACCGACGTaGCATTGGAGCTGGGGAGCTCTTCCTGTGGGGATGGCAAGCTGG +
Preference number: 6 (lower is better)
Translates to: ISGSQSCLRTSSPPT*HWSWGALPVGMASW
Trigger: CCAGCTTGCCATCCCCACAGGAAGAGCTCCCCAGCTCCAATGCAACGTCGGTGGAGAAGATGTTCGGAGGCAAGATTGTGACCCGGATAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp GTCCTTGATGGCTTCCATGACAGGCTCATACAGGTCTaGGAAGCCCGGGAACCGAAACACCATGCAGTGCAC +
Preference number: 6 (lower is better)
Translates to: VLDGFHDRLIQV*EAREPKHHAVH
Trigger: GTGCACTGCATGGTGTTTCGGTTCCCGGGCTTCCCAGACCTGTATGAGCCTGTCATGGAAGCCATCAAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 72 bp ACCAGTCTGTGGAAGTCACCATTGCCACCTGCAGGGTaGCAGCCCCCTGGTGAGCCTTCATCCTCATCTTTG +
Preference number: 6 (lower is better)
Translates to: TSLWKSPLPPAG*QPPGEPSSSSL
Trigger: CAAAGATGAGGATGAAGGCTCACCAGGGGGCTGCAACCCTGCAGGTGGCAATGGTGACTTCCACAGACTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 72 bp GCATCCTGCCCCAGCAGCTGCTTGATTCGGTCCTCATaGGGAATGTGGAGGTCCTTGATGGCTTCCATGACA +
Preference number: 6 (lower is better)
Translates to: ASCPSSCLIRSS*GMWRSLMASMT
Trigger: TGTCATGGAAGCCATCAAGGACCTCCACATTCCCAATGAGGACCGAATCAAGCAGCTGCTGGGGCAGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 72 bp GGGAGCTCTTCCTGTGGGGATGGCAAGCTGGACTGCTaGAGCTTCTGGCAGATCCTCATCCCAGTTTTCTCT +
Preference number: 6 (lower is better)
Translates to: GSSSCGDGKLDC*SFWQILIPVFS
Trigger: AGAGAAAACTGGGATGAGGATCTGCCAGAAGCTCAAGCAGTCCAGCTTGCCATCCCCACAGGAAGAGCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS TCA 72 bp ACCCTCACGAGCATAGCAGTAATAGTGGCCACTCTCTaGGGACACTCCAGAGTGCACCACCACACTACAGAG +
Preference number: 6 (lower is better)
Translates to: TLTSIAVIVATL*GHSRVHHHTTE
Trigger: CTCTGTAGTGTGGTGGTGCACTCTGGAGTGTCCTCAGAGAGTGGCCACTATTACTGCTATGCTCGTGAGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CCA 72 bp GTGAAGGCTTCCTCCCTTGAGGAAACATTGAGGCAGTaGAGACAGCATATCCGGGTCACAATCTTGCCTCCG +
Preference number: 6 (lower is better)
Translates to: VKASSLEETLRQ*RQHIRVTILPP
Trigger: CGGAGGCAAGATTGTGACCCGGATATGCTGTCTCCACTGCCTCAATGTTTCCTCAAGGGAGGAAGCCTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 90 bp AAGGCCAAAGAGAGGTCTGTGAAGGCTTCCTCCCTTGAGGAAACATaGAGGCAGTGGAGACAGCATATCCGGGTCACAATCTTGCCTCCG +
Preference number: 6 (lower is better)
Translates to: KAKERSVKASSLEET*RQWRQHIRVTILPP
Trigger: CGGAGGCAAGATTGTGACCCGGATATGCTGTCTCCACTGCCTCAATGTTTCCTCAAGGGAGGAAGCCTTCACAGACCTCTCTTTGGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 72 bp GCAGTCAGCATCTGGGAGTCTGTCACACTATCATCATaGCTGAGGTTCCGGACCACACCATCCATAAGCTCC +
Preference number: 6 (lower is better)
Translates to: AVSIWESVTLSS*LRFRTTPSISS
Trigger: GGAGCTTATGGATGGTGTGGTCCGGAACCTCAGCAATGATGATAGTGTGACAGACTCCCAGATGCTGACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 72 bp GAGAGGTCTGTGAAGGCTTCCTCCCTTGAGGAAACATaGAGGCAGTGGAGACAGCATATCCGGGTCACAATC +
Preference number: 6 (lower is better)
Translates to: ERSVKASSLEET*RQWRQHIRVTI
Trigger: GATTGTGACCCGGATATGCTGTCTCCACTGCCTCAATGTTTCCTCAAGGGAGGAAGCCTTCACAGACCTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS CAA 90 bp CTGCTAATGGCAGTCAGCATCTGGGAGTCTGTCACACTATCATCATaGCTGAGGTTCCGGACCACACCATCCATAAGCTCCAATGGGAGG +
Preference number: 6 (lower is better)
Translates to: LLMAVSIWESVTLSS*LRFRTTPSISSNGR
Trigger: CCTCCCATTGGAGCTTATGGATGGTGTGGTCCGGAACCTCAGCAATGATGATAGTGTGACAGACTCCCAGATGCTGACTGCCATTAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS TCA 72 bp TCAAGCGGAGCACACAGTGTCGAAAGTCAGAAGCCATaGATAAGGCCTGAAGGACACTGTTCACGTAGCATG +
Preference number: 6 (lower is better)
Translates to: SSGAHSVESQKP*IRPEGHCSRSM
Trigger: CATGCTACGTGAACAGTGTCCTTCAGGCCTTATTCATGGCTTCTGACTTTCGACACTGTGTGCTCCGCTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7
CDS TCA 72 bp GAAGAAGGAGGTGACATTGCTGACAGACTCAAAGGATaGGTAAGACACCCGGGTATCATTAAACAGGTACCA +
Preference number: 6 (lower is better)
Translates to: EEGGDIADRLKG*VRHPGIIKQVP
Trigger: TGGTACCTGTTTAATGATACCCGGGTGTCTTACTCATCCTTTGAGTCTGTCAGCAATGTCACCTCCTTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000139582.9
ENSMUST00000168435.7