RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USP28 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032267

Ensembl transcript IDs: ENSMUST00000047349.8, ENSMUST00000213874.2, ENSMUST00000215788.2, ENSMUST00000215856.2

Found 313 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATaGCGCAGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTT +
Preference number: 1 (lower is better)
Translates to: YKQTKGGCSFPLAAS*RSLMWKEGLTSTSF
Trigger: AAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR GCA 90 bp CTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATaGTTTCTTTTCTTTCACTCAAGACTGAATGTGAGGTTTTCTGGT +
Preference number: 1 (lower is better)
Translates to: LVWHLSHQHRAGSPG*FLFFHSRLNVRFSG
Trigger: ACCAGAAAACCTCACATTCAGTCTTGAGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR CCA 90 bp CTATTAAGTGTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTaGAAGCCCAGGATGCTTTCTTTTCTTTCACTCAAGACTGAATGT +
Preference number: 1 (lower is better)
Translates to: LLSVPCVASVTPAQG*KPRMLSFLSLKTEC
Trigger: ACATTCAGTCTTGAGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAACACTTAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR GCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCTCTGTCACAACAGACTaGCACATAACAGGCAGGGGA +
Preference number: 2 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGSVTTD*HITGRG
Trigger: TCCCCTGCCTGTTATGTGGCAGTCTGTTGTGACAGA...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR CCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTTGGCGCAGCCTTATGTaGAAGGAAGGGCTCACCAGC +
Preference number: 2 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTWRSLM*KEGLTS
Trigger: GCTGGTGAGCCCTTCCTTCCACATAAGGCTGCGCCA...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR TCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTGACCGGAGACCAGACTaGGTCTTGACTGTCCATGAG +
Preference number: 2 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTDRRPD*VLTVHE
Trigger: CTCATGGACAGTCAAGACTCAGTCTGGTCTCCGGTC...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR TCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTAGACCGGAGACCAGACTaGGTCTTGACTGTCCATGAG +
Preference number: 2 (lower is better)
Translates to: LFSSLARARQDPYYQSLVDRRPD*VLTVHE
Trigger: CTCATGGACAGTCAAGACTCAGTCTGGTCTCCGGTC...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR CAA 90 bp GTTTATCTAAAGTATAAACAGACCAAAGGGGGATGCAGCTTTCCCTaGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCTCACC +
Preference number: 2 (lower is better)
Translates to: VYLKYKQTKGGCSFP*AASWRSLMWKEGLT
Trigger: GGTGAGCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATACTTTAGATAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR TCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCTCCTGCCTTCTTCAGTaGAATAGCTCTTGTGGTTCT +
Preference number: 2 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSSCLLQ*NSSCGS
Trigger: AGAACCACAAGAGCTATTTCACTGAAGAAGGCAGGA...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR GCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCGCTGTCAAAGACTGGTaGCTGAAGGGTAATTTAAAA +
Preference number: 2 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGAVKDW*LKGNLK
Trigger: TTTTAAATTACCCTTCAGGCACCAGTCTTTGACAGC...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR GCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGGATGAGTCACCCTTTTaGTGTCAAAGACTGGTGCCT +
Preference number: 2 (lower is better)
Translates to: YVEGRAHQHLFSSLARARDESPF*CQRLVP
Trigger: AGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATC...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR CCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCAAAACCTTAATGCACTaGCTCCTGCCTTCTTCAGTG +
Preference number: 2 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSKTLMH*LLPSSV
Trigger: CACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTT...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR CCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCCAAACCCAAGTGTTATaGGAGATTTACAAAGGCAGT +
Preference number: 2 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGQTQVL*EIYKGS
Trigger: ACTGCCTTTGTAAATCTCCCATAACACTTGGGTTTG...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR GCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTTCTGTCACAACAGACTaGCACATAACAGGCAGGGGA +
Preference number: 2 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTSVTTD*HITGRG
Trigger: TCCCCTGCCTGTTATGTGGCAGTCTGTTGTGACAGA...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR GCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTATCTGTCACAACAGACTaGCACATAACAGGCAGGGGA +
Preference number: 2 (lower is better)
Translates to: LFSSLARARQDPYYQSLVSVTTD*HITGRG
Trigger: TCCCCTGCCTGTTATGTGGCAGTCTGTTGTGACAGA...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR TCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATTCCTGCCTTCTTCAGTaGAATAGCTCTTGTGGTTCT +
Preference number: 2 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNSCLLQ*NSSCGS
Trigger: AGAACCACAAGAGCTATTTCACTGAAGAAGGCAGGA...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR TCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAATCTCTGGTAGCTaGGGACTTTTAAATGTCACC +
Preference number: 2 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEPISGS*GLLNVT
Trigger: GGTGACATTTAAAAGTCCTCAGCTACCAGAGATTGG...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR CCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCAAACCCAAGTGTTATaGGAGATTTACAAAGGCAGT +
Preference number: 2 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSQTQVL*EIYKGS
Trigger: ACTGCCTTTGTAAATCTCCCATAACACTTGGGTTTG...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR CCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTAAAACCTTAATGCACTaGCTCCTGCCTTCTTCAGTG +
Preference number: 2 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTKTLMH*LLPSSV
Trigger: CACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTT...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR TCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATTCCTGCCTTCTTCAGTaGAATAGCTCTTGTGGTTCT +
Preference number: 2 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNSCLLQ*NSSCGS
Trigger: AGAACCACAAGAGCTATTTCACTGAAGAAGGCAGGA...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR-3UTR CCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATAAAACCTTAATGCACTaGCTCCTGCCTTCTTCAGTG +
Preference number: 2 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNKTLMH*LLPSSV
Trigger: CACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTT...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR CCA 72 bp ACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATaGCGCAGCCTTATGTGGAAGGAAGGGCTCACCAGC +
Preference number: 3 (lower is better)
Translates to: TKGGCSFPLAAS*RSLMWKEGLTS
Trigger: GCTGGTGAGCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR CCA 72 bp AGTATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTaGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAG +
Preference number: 3 (lower is better)
Translates to: SINRPKGDAAFP*RLHGAALCGRK
Trigger: CTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR CCA 72 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTaGAAGCCCAGGATGCTTTCTTTTCTTTCACTCAAG +
Preference number: 3 (lower is better)
Translates to: VPCVASVTPAQG*KPRMLSFLSLK
Trigger: CTTGAGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR GCA 72 bp CTGGTTTATCTAAAGTATAAACAGACCAAAGGGGGATaGAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTT +
Preference number: 3 (lower is better)
Translates to: LVYLKYKQTKGG*SFPLAASWRSL
Trigger: AAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATACTTTAGATAAACCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR GCA 72 bp CATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATaGTTTCTTTTCTTTCACTCAAGACTGAATGTGAGG +
Preference number: 3 (lower is better)
Translates to: HLSHQHRAGSPG*FLFFHSRLNVR
Trigger: CCTCACATTCAGTCTTGAGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
3UTR CCA 72 bp AAAAGTGGCACGAGGTTTAGACAAACCCAAGTGTTATaGGAGATTTACAAAGGCAGTTCAGGTCTTCTAGGA +
Preference number: 3 (lower is better)
Translates to: KSGTRFRQTQVL*EIYKGSSGLLG
Trigger: TCCTAGAAGACCTGAACTGCCTTTGTAAATCTCCCATAACACTTGGGTTTGTCTAAACCTCGTGCCACTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCCCGAGGAGCTGGGGGTaGAGGCGTTTCCAGAGACGA +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGPRSWG*RRFQRR
Trigger: TCGTCTCTGGAAACGCCTGCACCCCCAGCTCCTCGG...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTGACTGTCCGAGGAGCTaGGGGTGCAGGCGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLDCPRS*GCRRFQ
Trigger: CTGGAAACGCCTGCACCCCCAGCTCCTCGGACAGTC...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTGACCTCAGAGTTAGGTaGGGCAGCAGCCTCCGTGTC +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLDLRVR*GSSLRV
Trigger: GACACGGAGGCTGCTGCCGCACCTAACTCTGAGGTC...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTTCAAGCAGTAGGCGCTaGCATTTCTCAGGCCCCCGT +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSSSSRR*HFSGPR
Trigger: ACGGGGGCCTGAGAAATGTCAGCGCCTACTGCTTGA...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTAGGCGAGGGTCACTGTaGGAGGTGGGTGTCTCTTTG +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLRRGSL*EVGVSL
Trigger: CAAAGAGACACCCACCTCTCACAGTGACCCTCGCCT...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCCGAGGAGCTGGGGGTaGAGGCGTTTCCAGAGACGA +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSPRSWG*RRFQRR
Trigger: TCGTCTCTGGAAACGCCTGCACCCCCAGCTCCTCGG...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCTCAAGCAGTAGGCGCTaGCATTTCTCAGGCCCCCGT +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSSSSRR*HFSGPR
Trigger: ACGGGGGCCTGAGAAATGTCAGCGCCTACTGCTTGA...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCCCTGAATGTACTGCCTaGGTTCCACAGACAGGGCTT +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGPECTA*VPQTGL
Trigger: AAGCCCTGTCTGTGGAACTCAGGCAGTACATTCAGG...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTACCAGTGGTTCCTCATaGCCTCGATGGCATCGAGGT +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLTSGSS*PRWHRG
Trigger: ACCTCGATGCCATCGAGGTCATGAGGAACCACTGGT...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTGCCCAGTAGTGTCCTaGACTGGCTTGTCCTTCGTG +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLCPVVS*TGLSFV
Trigger: CACGAAGGACAAGCCAGTGCAGGACACTACTGGGCA...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATGACTGTCCGAGGAGCTaGGGGTGCAGGCGTTTCCAG +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNDCPRS*GCRRFQ
Trigger: CTGGAAACGCCTGCACCCCCAGCTCCTCGGACAGTC...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCAGGTGGGTGTCTCTTTaGCAAGCTGATAGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGRWVSL*QADRAW
Trigger: CCAGGCTCTATCAGCTTGCCAAAGAGACACCCACCT...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCTCTCGGTCAAAGGTCTaGCGTGCTTTAGCTATGGCC +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGSRSKV*RALAMA
Trigger: GGCCATAGCTAAAGCACGCCAGACCTTTGACCGAGA...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTCCGAGGAGCTGGGGGTaGAGGCGTTTCCAGAGACGA +
Preference number: 4 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTPRSWG*RRFQRR
Trigger: TCGTCTCTGGAAACGCCTGCACCCCCAGCTCCTCGG...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCATCCCCTCAGAGCTaGGAAGAGCATCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLSSPQS*EEHLLE
Trigger: CTCCAGAAGATGCTCTTCCCAGCTCTGAGGGGATGA...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTAGGCATGAGCTGTGTTaGCAATTGCCTGGGCAGTCT +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLRHELC*QLPGQS
Trigger: AGACTGCCCAGGCAATTGCCAACACAGCTCATGCCT...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCAAAGAGAAGCAGCCTTaGCATTCAGCTCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGKEKQP*HSAPEG
Trigger: GCCTTCTGGAGCTGAATGCCAAGGCTGCTTCTCTTT...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCTCACTCCGCCACCTCTaGAGACAGGTCTTAACGAAG +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSSLRHL*RQVLTK
Trigger: CTTCGTTAAGACCTGTCTTCAGAGGTGGCGGAGTGA...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCCTCCAGTTATCTTCCTaGATGTACTGCCTGAGTTCC +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGLQLSS*MYCLSS
Trigger: GGAACTCAGGCAGTACATTCAGGAAGATAACTGGAG...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTGCCTTAATAAGCCCTaGTTCAGACCCATCTCGGTC +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLCLNKP*FRPISV
Trigger: GACCGAGATGGGTCTGAAGCAGGGCTTATTAAGGCA...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCACATTAACAGCTAGCTaGAACGCATCCTCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGTLTAS*NASSSQ
Trigger: TTGGCTGGAGGATGCGTTCCAGCTAGCTGTTAATGT...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCGGGAAGAGCATCTTCTaGAGAGGAAAAGGTACTTCC +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGGKSIF*RGKGTS
Trigger: GGAAGTACCTTTTCCTCTCCAGAAGATGCTCTTCCC...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCTCATCCCCTCAGAGCTaGGAAGAGCATCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSSSPQS*EEHLLE
Trigger: CTCCAGAAGATGCTCTTCCCAGCTCTGAGGGGATGA...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCGCCTCTGCACTGAAGTaGGGCAAGTTGTCATTGATA +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGASALK*GKLSLI
Trigger: TATCAATGACAACTTGCCCCACTTCAGTGCAGAGGC...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCAGGCATGAGCTGTGTTaGCAATTGCCTGGGCAGTCT +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSRHELC*QLPGQS
Trigger: AGACTGCCCAGGCAATTGCCAACACAGCTCATGCCT...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCAAGGATCTAGAAGCCTaGGTAGGAACTCTCCTAAGC +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGKDLEA*VGTLLS
Trigger: GCTTAGGAGAGTTCCTACCCAGGCTTCTAGATCCTT...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTGGCTGCCCAAGAGACTaGTTAAACTCAAATCTGGAG +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLGCPRD*LNSNLE
Trigger: CTCCAGATTTGAGTTTAATCAGTCTCTTGGGCAGCC...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCGGGGCAAGTTGTCATTaGTATACATCAAGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGGASCH*YTSSSR
Trigger: CCTACTGCTTGATGTATATCAATGACAACTTGCCCC...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCTCCTCCACCTCTTGCTaGAACCTCCAGTTATCTTCC +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSSSTSC*NLQLSS
Trigger: GGAAGATAACTGGAGGTTTCAGCAAGAGGTGGAGGA...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGTGTGGAGAAATCCTGTaGGGAAGAGTTCGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARCGEIL*GRVRGG
Trigger: TCCTCCCCGAACTCTTCCTCACAGGATTTCTCCACA...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATACCAGTGGTTCCTCATaGCCTCGATGGCATCGAGGT +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNTSGSS*PRWHRG
Trigger: ACCTCGATGCCATCGAGGTCATGAGGAACCACTGGT...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCGCTCCTTTAGGACGATaGTTTCTGCAGAAGGATCTA +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGAPLGR*FLQKDL
Trigger: TAGATCCTTCTGCAGAAATCATCGTCCTAAAGGAGC...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCCAATCGCCTTCGTGCTaGTCGAGATACAGTTCTTTA +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGQSPSC*SRYSSL
Trigger: TAAAGAACTGTATCTCGAGCAGCACGAAGGCGATTG...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCGGCTTCCACTTCTCCTaGAGTCTCATCAGATTCATT +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGGFHFS*SLIRFI
Trigger: AATGAATCTGATGAGACTGCAGGAGAAGTGGAAGCC...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCTTTGCAATCACAGCATaGTCAGAAGACAAGCATCGG +
Preference number: 4 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGFAITA*SEDKHR
Trigger: CCGATGCTTGTCTTCTGAGCATGCTGTGATTGCAAA...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTAGCTGTGTTGGCAATTaGCTGGGCAGTCTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLSCVGN*LGSLFF
Trigger: AAAGAACAGACTGCCCAGGCAATTGCCAACACAGCT...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTAGAAAGGAAGGATCCTaGATGCCTGTGATTTCTCGC +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSRKEGS*MPVISR
Trigger: GCGAGAAATCACAGGCATCCAGGATCCTTCCTTTCT...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTATTTTTCAGCCCAACTaGCCAACCATCCACTCTCCT +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSIFQPN*PTIHSP
Trigger: AGGAGAGTGGATGGTTGGCCAGTTGGGCTGAAAAAT...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCGATCCTGGATGCCTGTaGTTTCTCGCAGCTGATTTA +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSDPGCL*FLAADL
Trigger: TAAATCAGCTGCGAGAAATCACAGGCATCCAGGATC...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGCCTTTAATGCTTCATaGAGAAAGGAAGGATCCTGG +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSAFNAS*RKEGSW
Trigger: CCAGGATCCTTCCTTTCTTCATGAAGCATTAAAGGC...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGGTTTCCAGAGACGAGTaGGGAGAGGTAAATGGCCCA +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEVSRDE*GEVNGP
Trigger: TGGGCCATTTACCTCTCCTCACTCGTCTCTGGAAAC...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGTCATTTCTTCATCTGTaGCTGTCCGAGGAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQESFLHL*LSEELG
Trigger: CCCCAGCTCCTCGGACAGTCACAGATGAAGAAATGA...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCCTGAATGTACTGCCTaGGTTCCACAGACAGGGCTT +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNPECTA*VPQTGL
Trigger: AAGCCCTGTCTGTGGAACTCAGGCAGTACATTCAGG...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGCTCCTTTAGGACGATaGTTTCTGCAGAAGGATCTA +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSAPLGR*FLQKDL
Trigger: TAGATCCTTCTGCAGAAATCATCGTCCTAAAGGAGC...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTACTGTTGAAACTCCTTaGATGGACTCCATGACAGCT +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSTVETP*MDSMTA
Trigger: AGCTGTCATGGAGTCCATTCAAGGAGTTTCAACAGT...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTTACTTCAGATGGTTCTaGAGCAGTTGTGTCGTGACT +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSYFRWF*SSCVVT
Trigger: AGTCACGACACAACTGCTGCAGAACCATCTGAAGTA...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTCAATCGCCTTCGTGCTaGTCGAGATACAGTTCTTTA +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSQSPSC*SRYSSL
Trigger: TAAAGAACTGTATCTCGAGCAGCACGAAGGCGATTG...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGGCTTCCACTTCTCCTaGAGTCTCATCAGATTCATT +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSGFHFS*SLIRFI
Trigger: AATGAATCTGATGAGACTGCAGGAGAAGTGGAAGCC...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCTGCCTCACTCAAGGCTaGTTCTACACCACTCTTCTC +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSCLTQG*FYTTLL
Trigger: GAGAAGAGTGGTGTAGAAGCAGCCTTGAGTGAGGCA...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTCAGCTGCAAACCGGTTaGAAAGATCATAGGGAGAAT +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLQLQTG*KDHREN
Trigger: ATTCTCCCTATGATCTTTGCAACCGGTTTGCAGCTG...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTCTCTTCTACTTCAGATaGTTCTGCAGCAGTTGTGTC +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSLFYFR*FCSSCV
Trigger: GACACAACTGCTGCAGAACCATCTGAAGTAGAAGAG...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATGGAGACTCAAGGCAATaGCTGCCTGCAGGTCATCTT +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNGDSRQ*LPAGHL
Trigger: AAGATGACCTGCAGGCAGCCATTGCCTTGAGTCTCC...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGGTGAGGAGAGGTAAATaGCCCATTCATCCCCTCAGA +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARVRRGK*PIHPLR
Trigger: TCTGAGGGGATGAATGGGCCATTTACCTCTCCTCAC...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGGGTCACTGTGAGAGGTaGGTGTCTCTTTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEGHCER*VSLWQA
Trigger: AGCTTGCCAAAGAGACACCCACCTCTCACAGTGACC...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTTGGTACTTTCCTTTTTaGAAGAGTTCCAGGCCCGTT +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSWYFPF*KSSRPV
Trigger: AACGGGCCTGGAACTCTTCCAAAAAGGAAAGTACCA...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCAAAGAGAAGCAGCCTTaGCATTCAGCTCCAGAAGGC +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSKEKQP*HSAPEG
Trigger: GCCTTCTGGAGCTGAATGCCAAGGCTGCTTCTCTTT...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCAAGGATCTAGAAGCCTaGGTAGGAACTCTCCTAAGC +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSKDLEA*VGTLLS
Trigger: GCTTAGGAGAGTTCCTACCCAGGCTTCTAGATCCTT...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGGTGATTTCTCGCAGCTaGTTTAACAGCATCTGGCAG +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARVISRS*FNSIWQ
Trigger: CTGCCAGATGCTGTTAAATCAGCTGCGAGAAATCAC...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCGTGATTTCTCGCAGCTaGTTTAACAGCATCTGGCAG +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSVISRS*FNSIWQ
Trigger: CTGCCAGATGCTGTTAAATCAGCTGCGAGAAATCAC...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCGATCCTGGATGCCTGTaGTTTCTCGCAGCTGATTTA +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSDPGCL*FLAADL
Trigger: TAAATCAGCTGCGAGAAATCACAGGCATCCAGGATC...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGGGCTGCCCAAGAGACTaGTTAAACTCAAATCTGGAG +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARGCPRD*LNSNLE
Trigger: CTCCAGATTTGAGTTTAATCAGTCTCTTGGGCAGCC...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGGTACTTCCAGCATTCTaGGAGCAGCTTTCTGGACTT +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARVLPAF*EQLSGL
Trigger: AAGTCCAGAAAGCTGCTCTCAGAATGCTGGAAGTAC...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCGTACTTCCAGCATTCTaGGAGCAGCTTTCTGGACTT +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSVLPAF*EQLSGL
Trigger: AAGTCCAGAAAGCTGCTCTCAGAATGCTGGAAGTAC...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTGTTTCCAGAGACGAGTaGGGAGAGGTAAATGGCCCA +
Preference number: 4 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTVSRDE*GEVNGP
Trigger: TGGGCCATTTACCTCTCCTCACTCGTCTCTGGAAAC...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTATCACTCCGCCACCTCTaGAGACAGGTCTTAACGAAG +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVSLRHL*RQVLTK
Trigger: CTTCGTTAAGACCTGTCTTCAGAGGTGGCGGAGTGA...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCTGGCTTGTCCTTCGTaGACAAGAACTGCATGTAAG +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARLACPS*TRTACK
Trigger: CTTACATGCAGTTCTTGTTCACGAAGGACAAGCCAG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCTCCAGTTATCTTCCTaGATGTACTGCCTGAGTTCC +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSLQLSS*MYCLSS
Trigger: GGAACTCAGGCAGTACATTCAGGAAGATAACTGGAG...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTTGTGGAGAAATCCTGTaGGGAAGAGTTCGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTCGEIL*GRVRGG
Trigger: TCCTCCCCGAACTCTTCCTCACAGGATTTCTCCACA...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATAGGCGAGGGTCACTGTaGGAGGTGGGTGTCTCTTTG +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNRRGSL*EVGVSL
Trigger: CAAAGAGACACCCACCTCTCACAGTGACCCTCGCCT...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGTCCATCAATTTGGCCTaGGCCACCTTCATGATACTG +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARSINLA*ATFMIL
Trigger: CAGTATCATGAAGGTGGCTCAGGCCAAATTGATGGA...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCACTGTTGAAACTCCTTaGATGGACTCCATGACAGCT +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSTVETP*MDSMTA
Trigger: AGCTGTCATGGAGTCCATTCAAGGAGTTTCAACAGT...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCAGCTGTGTTGGCAATTaGCTGGGCAGTCTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSSCVGN*LGSLFF
Trigger: AAAGAACAGACTGCCCAGGCAATTGCCAACACAGCT...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTGCCGCCTGCTCTAACTaGTCTGCAAGGTTTGTTTCC +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTAACSN*SARFVS
Trigger: GGAAACAAACCTTGCAGAGCAGTTAGAGCAGGCGGC...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCAGAAAGGAAGGATCCTaGATGCCTGTGATTTCTCGC +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSRKEGS*MPVISR
Trigger: GCGAGAAATCACAGGCATCCAGGATCCTTCCTTTCT...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTTCAAAGGTCAACACTaGAGGCAGCTTTGTAAACCA +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLFKGQH*RQLCKP
Trigger: TGGTTTACAAAGCTGCCTCCAGTGTTGACCTTTGAA...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTAAGGTGGGTGTCTCTTTaGCAAGCTGATAGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVRWVSL*QADRAW
Trigger: CCAGGCTCTATCAGCTTGCCAAAGAGACACCCACCT...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTGCAAGGTTTGTTTCCTaGGGCTTCTTGGGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTARFVS*GFLGSA
Trigger: AGCTGAGCCCAAGAAGCCCCAGGAAACAAACCTTGC...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
3UTR CAA 72 bp AAGTATAAACAGACCAAAGGGGGATGCAGCTTTCCCTaGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAA +
Preference number: 4 (lower is better)
Translates to: KYKQTKGGCSFP*AASWRSLMWKE
Trigger: TTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCACAGCGTTTTCTCTTTaGGCGTTTAGTTTCTGCAGA +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSTAFSL*AFSFCR
Trigger: TCTGCAGAAACTAAACGCTCAAAGAGAAAACGCTGT...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCTGGCTTGTCCTTCGTaGACAAGAACTGCATGTAAG +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQELACPS*TRTACK
Trigger: CTTACATGCAGTTCTTGTTCACGAAGGACAAGCCAG...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTTCAAGCAGTAGGCGCTaGCATTTCTCAGGCCCCCGT +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFSSSRR*HFSGPR
Trigger: ACGGGGGCCTGAGAAATGTCAGCGCCTACTGCTTGA...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGGGGGCAAGTTGTCATTaGTATACATCAAGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARGASCH*YTSSSR
Trigger: CCTACTGCTTGATGTATATCAATGACAACTTGCCCC...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCCAGTTATCTTCCTaGATGTACTGCCTGAGTTCC +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNLQLSS*MYCLSS
Trigger: GGAACTCAGGCAGTACATTCAGGAAGATAACTGGAG...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTTCCTCCACCTCTTGCTaGAACCTCCAGTTATCTTCC +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTSSTSC*NLQLSS
Trigger: GGAAGATAACTGGAGGTTTCAGCAAGAGGTGGAGGA...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTAGGCGAGGGTCACTGTaGGAGGTGGGTGTCTCTTTG +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFRRGSL*EVGVSL
Trigger: CAAAGAGACACCCACCTCTCACAGTGACCCTCGCCT...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATTCCATCAATTTGGCCTaGGCCACCTTCATGATACTG +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNSINLA*ATFMIL
Trigger: CAGTATCATGAAGGTGGCTCAGGCCAAATTGATGGA...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTGTAAACCAACGCTCCTaGCCATACTTCACGGAACGA +
Preference number: 4 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTVNQRS*PYFTER
Trigger: TCGTTCCGTGAAGTATGGGCAGGAGCGTTGGTTTAC...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTGTAAACCAACGCTCCTaGCCATACTTCACGGAACGA +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTVNQRS*PYFTER
Trigger: TCGTTCCGTGAAGTATGGGCAGGAGCGTTGGTTTAC...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAATCGCCTTCGTGCTaGTCGAGATACAGTTCTTTA +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARQSPSC*SRYSSL
Trigger: TAAAGAACTGTATCTCGAGCAGCACGAAGGCGATTG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCACCAGGTAGGACAATaGTTCCTGGTACTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARHQVGQ*FLVLSF
Trigger: AAAGGAAAGTACCAGGAAGCATTGTCCTACCTGGTG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAGCTGCAAACCGGTTaGAAAGATCATAGGGAGAAT +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARQLQTG*KDHREN
Trigger: ATTCTCCCTATGATCTTTGCAACCGGTTTGCAGCTG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGACATTAACAGCTAGCTaGAACGCATCCTCCAGCCAA +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQETLTAS*NASSSQ
Trigger: TTGGCTGGAGGATGCGTTCCAGCTAGCTGTTAATGT...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATGGGAAGAGCATCTTCTaGAGAGGAAAAGGTACTTCC +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNGKSIF*RGKGTS
Trigger: GGAAGTACCTTTTCCTCTCCAGAAGATGCTCTTCCC...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTGTGAGGAGAGGTAAATaGCCCATTCATCCCCTCAGA +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTVRRGK*PIHPLR
Trigger: TCTGAGGGGATGAATGGGCCATTTACCTCTCCTCAC...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAAGCTGATAGAGCCTaGAGTACTCCTCATGAAATG +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSQADRA*STPHEM
Trigger: CATTTCATGAGGAGTACTCCAGGCTCTATCAGCTTG...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATAAGGATCTAGAAGCCTaGGTAGGAACTCTCCTAAGC +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNKDLEA*VGTLLS
Trigger: GCTTAGGAGAGTTCCTACCCAGGCTTCTAGATCCTT...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGACAGCGTTTTCTCTTTaGGCGTTTAGTTTCTGCAGA +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARTAFSL*AFSFCR
Trigger: TCTGCAGAAACTAAACGCTCAAAGAGAAAACGCTGT...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTCTGGCTTGTCCTTCGTaGACAAGAACTGCATGTAAG +
Preference number: 4 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTLACPS*TRTACK
Trigger: CTTACATGCAGTTCTTGTTCACGAAGGACAAGCCAG...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATGGGGCAAGTTGTCATTaGTATACATCAAGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNGASCH*YTSSSR
Trigger: CCTACTGCTTGATGTATATCAATGACAACTTGCCCC...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTATCCATCAATTTGGCCTaGGCCACCTTCATGATACTG +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVSINLA*ATFMIL
Trigger: CAGTATCATGAAGGTGGCTCAGGCCAAATTGATGGA...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTTGCCCAGTAGTGTCCTaGACTGGCTTGTCCTTCGTG +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFCPVVS*TGLSFV
Trigger: CACGAAGGACAAGCCAGTGCAGGACACTACTGGGCA...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCCAGAAGGCATTTTCTaGGGTATAAGGCAATCACAG +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNPEGIF*GIRQSQ
Trigger: CTGTGATTGCCTTATACCGCAGAAAATGCCTTCTGG...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGAAGGCATTTTCTaGGGTATAAGGCAATCACAG +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEPEGIF*GIRQSQ
Trigger: CTGTGATTGCCTTATACCGCAGAAAATGCCTTCTGG...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATTCTCCTAAGCACAGCTaGAGATTCTCTGCAATATCC +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNSPKHS*RFSAIS
Trigger: GGATATTGCAGAGAATCTGCAGCTGTGCTTAGGAGA...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCAGTTATTGGGATTGTaGTTTTCTCCCCAAACTTCA +
Preference number: 4 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSQLLGL*FSPQTS
Trigger: TGAAGTTTGGGGAGAAAACCACAATCCCAATAACTG...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTAATTTTTCAGCCCAACTaGCCAACCATCCACTCTCCT +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVIFQPN*PTIHSP
Trigger: AGGAGAGTGGATGGTTGGCCAGTTGGGCTGAAAAAT...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTAGAATAGCTGCACCATaGGATTTTCAGATTTATTCC +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLRIAAP*DFQIYS
Trigger: GGAATAAATCTGAAAATCCCATGGTGCAGCTATTCT...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTGCCTCTGCACTGAAGTaGGGCAAGTTGTCATTGATA +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTASALK*GKLSLI
Trigger: TATCAATGACAACTTGCCCCACTTCAGTGCAGAGGC...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTAGTGTTGGCAATTGCCTaGGCAGTCTGTTCTTTTGCA +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVVLAIA*AVCSFA
Trigger: TGCAAAAGAACAGACTGCCCAGGCAATTGCCAACAC...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATAGGCATGAGCTGTGTTaGCAATTGCCTGGGCAGTCT +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNRHELC*QLPGQS
Trigger: AGACTGCCCAGGCAATTGCCAACACAGCTCATGCCT...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCAAGCTGATAGAGCCTaGAGTACTCCTCATGAAATG +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEQADRA*STPHEM
Trigger: CATTTCATGAGGAGTACTCCAGGCTCTATCAGCTTG...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGTGGTACTTTCCTTTTTaGAAGAGTTCCAGGCCCGTT +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEWYFPF*KSSRPV
Trigger: AACGGGCCTGGAACTCTTCCAAAAAGGAAAGTACCA...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCTCATCTTTGTTGTCGTaGGTGAGGTCTATCACTTTT +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSSSLLS*VRSITF
Trigger: AAAAGTGATAGACCTCACTCACGACAACAAAGATGA...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGGTGGCAGGTTATAACTaGGAACAAGTCTTCGAAATT +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARVAGYN*EQVFEI
Trigger: AATTTCGAAGACTTGTTCTCAGTTATAACCTGCCAC...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTTCATTTCTTCATCTGTaGCTGTCCGAGGAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFSFLHL*LSEELG
Trigger: CCCCAGCTCCTCGGACAGTCACAGATGAAGAAATGA...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATTCCTCCACCTCTTGCTaGAACCTCCAGTTATCTTCC +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNSSTSC*NLQLSS
Trigger: GGAAGATAACTGGAGGTTTCAGCAAGAGGTGGAGGA...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTTGTGGAGAAATCCTGTaGGGAAGAGTTCGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFCGEIL*GRVRGG
Trigger: TCCTCCCCGAACTCTTCCTCACAGGATTTCTCCACA...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTAGCTCCTTTAGGACGATaGTTTCTGCAGAAGGATCTA +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVAPLGR*FLQKDL
Trigger: TAGATCCTTCTGCAGAAATCATCGTCCTAAAGGAGC...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCTTTCTAACTTCTGCTaGAGAACTTGTATTTCCTCC +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARLSNFC*RTCISS
Trigger: GGAGGAAATACAAGTTCTGCAGCAGAAGTTAGAAAG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTATTAGAAGATGCCTCTaGACTGAAGTGGGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTIRRCL*TEVGQV
Trigger: AACTTGCCCCACTTCAGTGCAGAGGCATCTTCTAAT...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTAATTAGAAGATGCCTCTaGACTGAAGTGGGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVIRRCL*TEVGQV
Trigger: AACTTGCCCCACTTCAGTGCAGAGGCATCTTCTAAT...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTTTTGCAATCACAGCATaGTCAGAAGACAAGCATCGG +
Preference number: 4 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTFAITA*SEDKHR
Trigger: CCGATGCTTGTCTTCTGAGCATGCTGTGATTGCAAA...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTGGCAGTCTGTTCTTTTaGAATCACAGCATGCTCAGA +
Preference number: 4 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTGSLFF*NHSMLR
Trigger: TCTGAGCATGCTGTGATTGCAAAAGAACAGACTGCC...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTCACCAGGTAGGACAATaGTTCCTGGTACTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTHQVGQ*FLVLSF
Trigger: AAAGGAAAGTACCAGGAAGCATTGTCCTACCTGGTG...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTTCTCCTAAGCACAGCTaGAGATTCTCTGCAATATCC +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTSPKHS*RFSAIS
Trigger: GGATATTGCAGAGAATCTGCAGCTGTGCTTAGGAGA...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATGTCAAAGGTCTGGCGTaGTTTAGCTATGGCCAGGAT +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNVKGLA*FSYGQD
Trigger: ATCCTGGCCATAGCTAAAGCACGCCAGACCTTTGAC...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAGTTATTGGGATTGTaGTTTTCTCCCCAAACTTCA +
Preference number: 4 (lower is better)
Translates to: YVEGRAHQHLFSSLARARQLLGL*FSPQTS
Trigger: TGAAGTTTGGGGAGAAAACCACAATCCCAATAACTG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTTCATCCCCTCAGAGCTaGGAAGAGCATCTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFSSPQS*EEHLLE
Trigger: CTCCAGAAGATGCTCTTCCCAGCTCTGAGGGGATGA...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATGTGAGGAGAGGTAAATaGCCCATTCATCCCCTCAGA +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNVRRGK*PIHPLR
Trigger: TCTGAGGGGATGAATGGGCCATTTACCTCTCCTCAC...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTGGTCACTGTGAGAGGTaGGTGTCTCTTTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFGHCER*VSLWQA
Trigger: AGCTTGCCAAAGAGACACCCACCTCTCACAGTGACC...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTCATGTTCATGTCATCTaGACCAATTTCCATCAATTT +
Preference number: 4 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSHVHVI*TNFHQF
Trigger: AAATTGATGGAAATTGGTCCAGATGACATGAACATG...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTCATGTTCATGTCATCTaGACCAATTTCCATCAATTT +
Preference number: 4 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLHVHVI*TNFHQF
Trigger: AAATTGATGGAAATTGGTCCAGATGACATGAACATG...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTCTTTGTTGTCGTGAGTaGGGTCTATCACTTTTGCTA +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTLCCRE*GLSLLL
Trigger: TAGCAAAAGTGATAGACCTCACTCACGACAACAAAG...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTACTTTGTTGTCGTGAGTaGGGTCTATCACTTTTGCTA +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVLCCRE*GLSLLL
Trigger: TAGCAAAAGTGATAGACCTCACTCACGACAACAAAG...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGTCATCTTTGTTGTCGTaGGTGAGGTCTATCACTTTT +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQESSLLS*VRSITF
Trigger: AAAAGTGATAGACCTCACTCACGACAACAAAGATGA...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTTGCCCAGTAGTGTCCTaGACTGGCTTGTCCTTCGTG +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIACPVVS*TGLSFV
Trigger: CACGAAGGACAAGCCAGTGCAGGACACTACTGGGCA...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATTTCAAGGATGTTCTGTaGCAGGTTATAACTGAGAAC +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNFKDVL*QVITEN
Trigger: GTTCTCAGTTATAACCTGCCACAGAACATCCTTGAA...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATGGGAAGAGCATCTTCTaGAGAGGAAAAGGTACTTCC +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNGKSIF*RGKGTS
Trigger: GGAAGTACCTTTTCCTCTCCAGAAGATGCTCTTCCC...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCTTATTAATGATCAGGTaGATGCAGGGAATGATCAAC +
Preference number: 4 (lower is better)
Translates to: ALCGRKGSPAPLFITGKSLLMIR*MQGMIN
Trigger: GTTGATCATTCCCTGCATCCACCTGATCATTAATAA...GCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATTTTCCTGGGGCTTCTTaGGCTCAGCTTCATTATGCT +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNFPGAS*AQLHYA
Trigger: AGCATAATGAAGCTGAGCCCAAGAAGCCCCAGGAAA...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTAGTGGCAGGTTATAACTaGGAACAAGTCTTCGAAATT +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVVAGYN*EQVFEI
Trigger: AATTTCGAAGACTTGTTCTCAGTTATAACCTGCCAC...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR TCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTTCATTTCTTCATCTGTaGCTGTCCGAGGAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIASFLHL*LSEELG
Trigger: CCCCAGCTCCTCGGACAGTCACAGATGAAGAAATGA...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTTCACTCCGCCACCTCTaGAGACAGGTCTTAACGAAG +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIASLRHL*RQVLTK
Trigger: CTTCGTTAAGACCTGTCTTCAGAGGTGGCGGAGTGA...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR TCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTCCTGAATGTACTGCCTaGGTTCCACAGACAGGGCTT +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIAPECTA*VPQTGL
Trigger: AAGCCCTGTCTGTGGAACTCAGGCAGTACATTCAGG...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGTACCTTTCTAACTTCTaGTGCAGAACTTGTATTTCC +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEYLSNF*CRTCIS
Trigger: GGAAATACAAGTTCTGCAGCAGAAGTTAGAAAGGTA...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATGGCTTCCACTTCTCCTaGAGTCTCATCAGATTCATT +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNGFHFS*SLIRFI
Trigger: AATGAATCTGATGAGACTGCAGGAGAAGTGGAAGCC...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATTTTGCAATCACAGCATaGTCAGAAGACAAGCATCGG +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNFAITA*SEDKHR
Trigger: CCGATGCTTGTCTTCTGAGCATGCTGTGATTGCAAA...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATGGCAGTCTGTTCTTTTaGAATCACAGCATGCTCAGA +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNGSLFF*NHSMLR
Trigger: TCTGAGCATGCTGTGATTGCAAAAGAACAGACTGCC...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATTACTACCCTCTTGGGTaGTTCATTTTGGAAAAAGTA +
Preference number: 4 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNYYPLG*FILEKV
Trigger: TACTTTTTCCAAAATGAAGCACCCAAGAGGGTAGTA...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTCAGCTGCAGATTCTCTaGAATATCCTTCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFQLQIL*NILPQV
Trigger: TACCTGGGGAAGGATATTGCAGAGAATCTGCAGCTG...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATCAGCTGCAAACCGGTTaGAAAGATCATAGGGAGAAT +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNQLQTG*KDHREN
Trigger: ATTCTCCCTATGATCTTTGCAACCGGTTTGCAGCTG...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTACTCATCATAGCCATCTaGATCAGACCTAACAAGAAT +
Preference number: 4 (lower is better)
Translates to: LFSSLARARQDPYYQSLVLIIAI*IRPNKN
Trigger: ATTCTTGTTAGGTCTGATGCAGATGGCTATGATGAG...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATCTCTTCTACTTCAGATaGTTCTGCAGCAGTTGTGTC +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNLFYFR*FCSSCV
Trigger: GACACAACTGCTGCAGAACCATCTGAAGTAGAAGAG...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTAGGTGGGTGTCTCTTTaGCAAGCTGATAGAGCCTGG +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIARWVSL*QADRAW
Trigger: CCAGGCTCTATCAGCTTGCCAAAGAGACACCCACCT...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTGGTCACTGTGAGAGGTaGGTGTCTCTTTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIAGHCER*VSLWQA
Trigger: AGCTTGCCAAAGAGACACCCACCTCTCACAGTGACC...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGTTATTAATGATCAGGTaGATGCAGGGAATGATCAAC +
Preference number: 4 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQELLMIR*MQGMIN
Trigger: GTTGATCATTCCCTGCATCCACCTGATCATTAATAA...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTATTAGAAGATGCCTCTaGACTGAAGTGGGGCAAGTT +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFIRRCL*TEVGQV
Trigger: AACTTGCCCCACTTCAGTGCAGAGGCATCTTCTAAT...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTTGCCTCACTCAAGGCTaGTTCTACACCACTCTTCTC +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIACLTQG*FYTTLL
Trigger: GAGAAGAGTGGTGTAGAAGCAGCCTTGAGTGAGGCA...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTTACTACCCTCTTGGGTaGTTCATTTTGGAAAAAGTA +
Preference number: 4 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTYYPLG*FILEKV
Trigger: TACTTTTTCCAAAATGAAGCACCCAAGAGGGTAGTA...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTCAAGCTGATAGAGCCTaGAGTACTCCTCATGAAATG +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFQADRA*STPHEM
Trigger: CATTTCATGAGGAGTACTCCAGGCTCTATCAGCTTG...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTCAGCTGCAGATTCTCTaGAATATCCTTCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIAQLQIL*NILPQV
Trigger: TACCTGGGGAAGGATATTGCAGAGAATCTGCAGCTG...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTGGCTCAGCTTCATTATaGTCACTCAAGGCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIAGSASL*SLKAAS
Trigger: AGAAGCAGCCTTGAGTGAGCATAATGAAGCTGAGCC...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR CCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATTTCAAGGATGTTCTGTaGCAGGTTATAACTGAGAAC +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNFKDVL*QVITEN
Trigger: GTTCTCAGTTATAACCTGCCACAGAACATCCTTGAA...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTTTCAAAGGTCAACACTaGAGGCAGCTTTGTAAACCA +
Preference number: 4 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFFKGQH*RQLCKP
Trigger: TGGTTTACAAAGCTGCCTCCAGTGTTGACCTTTGAA...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTGTGTTGGCAATTGCCTaGGCAGTCTGTTCTTTTGCA +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIAVLAIA*AVCSFA
Trigger: TGCAAAAGAACAGACTGCCCAGGCAATTGCCAACAC...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTTACTTCAGATGGTTCTaGAGCAGTTGTGTCGTGACT +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIAYFRWF*SSCVVT
Trigger: AGTCACGACACAACTGCTGCAGAACCATCTGAAGTA...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR GCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATTACCTTTCTAACTTCTaGTGCAGAACTTGTATTTCC +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNYLSNF*CRTCIS
Trigger: GGAAATACAAGTTCTGCAGCAGAAGTTAGAAAGGTA...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTGGCAGTCTGTTCTTTTaGAATCACAGCATGCTCAGA +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIAGSLFF*NHSMLR
Trigger: TCTGAGCATGCTGTGATTGCAAAAGAACAGACTGCC...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATTACTACCCTCTTGGGTaGTTCATTTTGGAAAAAGTA +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNYYPLG*FILEKV
Trigger: TACTTTTTCCAAAATGAAGCACCCAAGAGGGTAGTA...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR GCA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATGTACTTTCTAACTTCTaGTGCAGAACTTGTATTTCC +
Preference number: 4 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNVLSNF*CRTCIS
Trigger: GGAAATACAAGTTCTGCAGCAGAAGTTAGAAAGTAC...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213874.2
CDS-3UTR CCA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTAGAATAGCTGCACCATaGGATTTTCAGATTTATTCC +
Preference number: 4 (lower is better)
Translates to: RIIQNLNALAPAFFSEIARIAAP*DFQIYS
Trigger: GGAATAAATCTGAAAATCCCATGGTGCAGCTATTCT...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCATGGTTCTGCAGCAGTaGTGTCGTGACTGGGCTCCT +
Preference number: 5 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGMVLQQ*CRDWAP
Trigger: AGGAGCCCAGTCACGACACAACTGCTGCAGAACCAT...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTATGGTTCTGCAGCAGTaGTGTCGTGACTGGGCTCCT +
Preference number: 5 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSMVLQQ*CRDWAP
Trigger: AGGAGCCCAGTCACGACACAACTGCTGCAGAACCAT...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 90 bp CTTAATAAGCCCTGCTTCAGACCCATCTCGGTCAAAGGTCTGGCGTaGTTTAGCTATGGCCAGGATGACCCCTTGCATGGCAGGGCTCAG +
Preference number: 5 (lower is better)
Translates to: LNKPCFRPISVKGLA*FSYGQDDPLHGRAQ
Trigger: CTGAGCCCTGCCATGCAAGGGGTCATCCTGGCCATAGCTAAAGCACGCCAGACCTTTGACCGAGATGGGTCTGAAGCAGGGCTTATTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS CCA 90 bp AATGCCTTAATAAGCCCTGCTTCAGACCCATCTCGGTCAAAGGTCTaGCGTGCTTTAGCTATGGCCAGGATGACCCCTTGCATGGCAGGG +
Preference number: 5 (lower is better)
Translates to: NALISPASDPSRSKV*RALAMARMTPCMAG
Trigger: CCCTGCCATGCAAGGGGTCATCCTGGCCATAGCTAAAGCACGCCAGACCTTTGACCGAGATGGGTCTGAAGCAGGGCTTATTAAGGCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCGTAACAGAGATGTCGTaGTATTTGAGCCAGGTCTGC +
Preference number: 5 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGVTEMS*YLSQVC
Trigger: GCAGACCTGGCTCAAATACAACGACATCTCTGTTAC...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTCCATTCCTCCACCTCTaGCTGAAACCTCCAGTTATC +
Preference number: 5 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLPFLHL*LKPPVI
Trigger: GATAACTGGAGGTTTCAGCAAGAGGTGGAGGAATGG...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTGGGCAGTCTGTTCTTTaGCAATCACAGCATGCTCAG +
Preference number: 5 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLGQSVL*QSQHAQ
Trigger: CTGAGCATGCTGTGATTGCAAAAGAACAGACTGCCC...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 90 bp AGCATCGGACCTCATGAGAGGACACTGCTGGAGACTCTTGTGATGTaGAGAAATCCTGTGAGGAAGAGTTCGGGGAGGACTCCATCTGTG +
Preference number: 5 (lower is better)
Translates to: SIGPHERTLLETLVM*RNPVRKSSGRTPSV
Trigger: CACAGATGGAGTCCTCCCCGAACTCTTCCTCACAGGATTTCTCCACATCACAAGAGTCTCCAGCAGTGTCCTCTCATGAGGTCCGATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 90 bp GAACATGCTGAAGGCGAGGGTCACTGTGAGAGGTGGGTGTCTCTTTaGCAAGCTGATAGAGCCTGGAGTACTCCTCATGAAATGCCTCAC +
Preference number: 5 (lower is better)
Translates to: EHAEGEGHCERWVSL*QADRAWSTPHEMPH
Trigger: GTGAGGCATTTCATGAGGAGTACTCCAGGCTCTATCAGCTTGCCAAAGAGACACCCACCTCTCACAGTGACCCTCGCCTTCAGCATGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTAACAGAGATGTCGTaGTATTTGAGCCAGGTCTGC +
Preference number: 5 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSVTEMS*YLSQVC
Trigger: GCAGACCTGGCTCAAATACAACGACATCTCTGTTAC...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp AGTTCAAAGGTCAACACTGGAGGCAGCTTTGTAAACCAACGCTCCTaGCCATACTTCACGGAACGATCCGAAGGAAGCAGCGCGATGTCA +
Preference number: 5 (lower is better)
Translates to: SSKVNTGGSFVNQRS*PYFTERSEGSSAMS
Trigger: TGACATCGCGCTGCTTCCTTCGGATCGTTCCGTGAAGTATGGGCAGGAGCGTTGGTTTACAAAGCTGCCTCCAGTGTTGACCTTTGAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 90 bp AACGAAGTTCATTTCTTCATCTGTGACTGTCCGAGGAGCTGGGGGTaGAGGCGTTTCCAGAGACGAGTGAGGAGAGGTAAATGGCCCATT +
Preference number: 5 (lower is better)
Translates to: NEVHFFICDCPRSWG*RRFQRRVRRGKWPI
Trigger: AATGGGCCATTTACCTCTCCTCACTCGTCTCTGGAAACGCCTGCACCCCCAGCTCCTCGGACAGTCACAGATGAAGAAATGAACTTCGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 90 bp TCACGGAACGATCCGAAGGAAGCAGCGCGATGTCACCTTCCACCATaGCCCCTTCCAAACATTCGTCTAAGTTGTGGTAACCGTTTACCT +
Preference number: 5 (lower is better)
Translates to: SRNDPKEAARCHLPP*PLPNIRLSCGNRLP
Trigger: AGGTAAACGGTTACCACAACTTAGACGAATGTTTGGAAGGGGCCATGGTGGAAGGTGACATCGCGCTGCTTCCTTCGGATCGTTCCGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS CCA 90 bp GGTCTTAACGAAGTTCATTTCTTCATCTGTGACTGTCCGAGGAGCTaGGGGTGCAGGCGTTTCCAGAGACGAGTGAGGAGAGGTAAATGG +
Preference number: 5 (lower is better)
Translates to: GLNEVHFFICDCPRS*GCRRFQRRVRRGKW
Trigger: CCATTTACCTCTCCTCACTCGTCTCTGGAAACGCCTGCACCCCCAGCTCCTCGGACAGTCACAGATGAAGAAATGAACTTCGTTAAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 90 bp GGTCACTGTGAGAGGTGGGTGTCTCTTTGGCAAGCTGATAGAGCCTaGAGTACTCCTCATGAAATGCCTCACTCAAGGCTGCTTCTACAC +
Preference number: 5 (lower is better)
Translates to: GHCERWVSLWQADRA*STPHEMPHSRLLLH
Trigger: GTGTAGAAGCAGCCTTGAGTGAGGCATTTCATGAGGAGTACTCCAGGCTCTATCAGCTTGCCAAAGAGACACCCACCTCTCACAGTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp GATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCTTATGTGGAAGGAAGGGCCTTCTGCTGCAGAACTaGTATTTCCTCCTTCAACTT +
Preference number: 5 (lower is better)
Translates to: DAAFPWRLHGAALCGRKGLLLQN*YFLLQL
Trigger: AAGTTGAAGGAGGAAATACAAGTTCTGCAGCAGAAG...GCCCTTCCTTCCACATAAGGCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCCATTCCTCCACCTCTaGCTGAAACCTCCAGTTATC +
Preference number: 5 (lower is better)
Translates to: YVEGRAHQHLFSSLARARPFLHL*LKPPVI
Trigger: GATAACTGGAGGTTTCAGCAAGAGGTGGAGGAATGG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTCGTTCTACTACCCTCTaGGGTGCTTCATTTTGGAAA +
Preference number: 5 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLRSTTL*GASFWK
Trigger: TTTCCAAAATGAAGCACCCAAGAGGGTAGTAGAACG...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCTGGTACTTTCCTTTTaGGAAGAGTTCCAGGCCCGT +
Preference number: 5 (lower is better)
Translates to: YVEGRAHQHLFSSLARARLVLSF*EEFQAR
Trigger: ACGGGCCTGGAACTCTTCCAAAAAGGAAAGTACCAG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGACTGCTCTGCAAGGTTaGTTTCCTGGGGCTTCTTGG +
Preference number: 5 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQETALQG*FPGASW
Trigger: CCAAGAAGCCCCAGGAAACAAACCTTGCAGAGCAGT...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS TCA 90 bp GTAGCACTCTCTTCTACTTCAGATGGTTCTGCAGCAGTTGTGTCGTaGCTGGGCTCCTTAACTCTTTGGTCTGTGAGAAGGCTGACAGCC +
Preference number: 5 (lower is better)
Translates to: VALSSTSDGSAAVVS*LGSLTLWSVRRLTA
Trigger: GGCTGTCAGCCTTCTCACAGACCAAAGAGTTAAGGAGCCCAGTCACGACACAACTGCTGCAGAACCATCTGAAGTAGAAGAGAGTGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215788.2
CDS TCA 90 bp CAGCATTCTGAGAGCAGCTTTCTGGACTTGAACTTTCCTTGGGTGTaGGGTCAGAAATCGGGCAGTGCACCGAGGGAAGTGGTAATGTCA +
Preference number: 5 (lower is better)
Translates to: QHSESSFLDLNFPWV*GQKSGSAPREVVMS
Trigger: TGACATTACCACTTCCCTCGGTGCACTGCCCGATTTCTGACCTCACACCCAAGGAAAGTTCAAGTCCAGAAAGCTGCTCTCAGAATGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 90 bp CCACCTCTTGCTGAAACCTCCAGTTATCTTCCTGAATGTACTGCCTaGGTTCCACAGACAGGGCTTCCACTTCTCCTGCAGTCTCATCAG +
Preference number: 5 (lower is better)
Translates to: PPLAETSSYLPECTA*VPQTGLPLLLQSHQ
Trigger: CTGATGAGACTGCAGGAGAAGTGGAAGCCCTGTCTGTGGAACTCAGGCAGTACATTCAGGAAGATAACTGGAGGTTTCAGCAAGAGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp AGGTCAGAAATCGGGCAGTGCACCGAGGGAAGTGGTAATGTCACATaGTCAGCACTTCCAGACAGACAGCTTTCAGAGGCAGGTTTTGTA +
Preference number: 5 (lower is better)
Translates to: RSEIGQCTEGSGNVT*SALPDRQLSEAGFV
Trigger: TACAAAACCTGCCTCTGAAAGCTGTCTGTCTGGAAGTGCTGAGCATGTGACATTACCACTTCCCTCGGTGCACTGCCCGATTTCTGACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp TTCCTGGGGCTTCTTGGGCTCAGCTTCATTATGCTCACTCAAGGCTaGTTCTACACCACTCTTCTCGTAGGCATGAGCTGTGTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: FLGLLGLSFIMLTQG*FYTTLLVGMSCVGN
Trigger: ATTGCCAACACAGCTCATGCCTACGAGAAGAGTGGTGTAGAAGCAGCCTTGAGTGAGCATAATGAAGCTGAGCCCAAGAAGCCCCAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTGTGTCCTGCACTGGCTaGTCCTTCGTGAACAAGAAC +
Preference number: 5 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTVSCTG*SFVNKN
Trigger: GTTCTTGTTCACGAAGGACAAGCCAGTGCAGGACAC...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCGTTCTACTACCCTCTaGGGTGCTTCATTTTGGAAA +
Preference number: 5 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSRSTTL*GASFWK
Trigger: TTTCCAAAATGAAGCACCCAAGAGGGTAGTAGAACG...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTAGTTTCCTGGGGCTTCTaGGGCTCAGCTTCATTATGC +
Preference number: 5 (lower is better)
Translates to: LFSSLARARQDPYYQSLVVSWGF*GSASLC
Trigger: GCATAATGAAGCTGAGCCCAAGAAGCCCCAGGAAAC...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS GCA 90 bp GTAGGCATGAGCTGTGTTGGCAATTGCCTGGGCAGTCTGTTCTTTTaGAATCACAGCATGCTCAGAAGACAAGCATCGGACCTCATGAGA +
Preference number: 5 (lower is better)
Translates to: VGMSCVGNCLGSLFF*NHSMLRRQASDLMR
Trigger: TCTCATGAGGTCCGATGCTTGTCTTCTGAGCATGCTGTGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTCATGCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp CTGATAGAGCCTGGAGTACTCCTCATGAAATGCCTCACTCAAGGCTaGTTCTACACCACTCTTCTCGTAGGCATGAGCTGTGTTGGCAAT +
Preference number: 5 (lower is better)
Translates to: LIEPGVLLMKCLTQG*FYTTLLVGMSCVGN
Trigger: ATTGCCAACACAGCTCATGCCTACGAGAAGAGTGGTGTAGAAGCAGCCTTGAGTGAGGCATTTCATGAGGAGTACTCCAGGCTCTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS CCA 90 bp TCAAGGCTGCTTCTACACCACTCTTCTCGTAGGCATGAGCTGTGTTaGCAATTGCCTGGGCAGTCTGTTCTTTTGCAATCACAGCATGCT +
Preference number: 5 (lower is better)
Translates to: SRLLLHHSSRRHELC*QLPGQSVLLQSQHA
Trigger: AGCATGCTGTGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTCATGCCTACGAGAAGAGTGGTGTAGAAGCAGCCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATAGCCAATCCAGGAGCTaGTGTGTGAATTCACTCACA +
Preference number: 5 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNSQSRS*CVNSLT
Trigger: TGTGAGTGAATTCACACACAAGCTCCTGGATTGGCT...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGTGGCCGAAGGTCTCATaGTTACAAAAGGGCTTTCCT +
Preference number: 5 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEWPKVS*LQKGFP
Trigger: AGGAAAGCCCTTTTGTAACAATGAGACCTTCGGCCA...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTCCATTCCTCCACCTCTaGCTGAAACCTCCAGTTATC +
Preference number: 5 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTPFLHL*LKPPVI
Trigger: GATAACTGGAGGTTTCAGCAAGAGGTGGAGGAATGG...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTGGGCAGTCTGTTCTTTaGCAATCACAGCATGCTCAG +
Preference number: 5 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTGQSVL*QSQHAQ
Trigger: CTGAGCATGCTGTGATTGCAAAAGAACAGACTGCCC...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCGTTCTACTACCCTCTaGGGTGCTTCATTTTGGAAA +
Preference number: 5 (lower is better)
Translates to: YVEGRAHQHLFSSLARARRSTTL*GASFWK
Trigger: TTTCCAAAATGAAGCACCCAAGAGGGTAGTAGAACG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp GTTCCTTGTGTGGCATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTCAGAATGGTCGTCATTaGTTTCAAAAAGAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: VPCVASVTPAQGWKPRMLQNGRH*FQKEKQ
Trigger: CTGCTTCTCTTTTTGAAACAAATGACGACCATTCTG...AAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGATGCCACACAAGGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp GGGGGAGGGTCTGAATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTATTTCACGGTTACTGTaGAAACTCCTTGAATGGACT +
Preference number: 5 (lower is better)
Translates to: GGGSESRSDTQSLCPGKSISRLL*KLLEWT
Trigger: AGTCCATTCAAGGAGTTTCAACAGTAACCGTGAAAT...AGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATTCAGACCCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 90 bp CTGGGAAGAGCATCTTCTGGAGAGGAAAAGGTACTTCCAGCATTCTaGGAGCAGCTTTCTGGACTTGAACTTTCCTTGGGTGTGAGGTCA +
Preference number: 5 (lower is better)
Translates to: LGRASSGEEKVLPAF*EQLSGLELSLGVRS
Trigger: TGACCTCACACCCAAGGAAAGTTCAAGTCCAGAAAGCTGCTCTCAGAATGCTGGAAGTACCTTTTCCTCTCCAGAAGATGCTCTTCCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp CTGAATGTACTGCCTGAGTTCCACAGACAGGGCTTCCACTTCTCCTaGAGTCTCATCAGATTCATTAGAAGATGCCTCTGCACTGAAGTG +
Preference number: 5 (lower is better)
Translates to: LNVLPEFHRQGFHFS*SLIRFIRRCLCTEV
Trigger: CACTTCAGTGCAGAGGCATCTTCTAATGAATCTGATGAGACTGCAGGAGAAGTGGAAGCCCTGTCTGTGGAACTCAGGCAGTACATTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp TGCTTCTACACCACTCTTCTCGTAGGCATGAGCTGTGTTGGCAATTaGCTGGGCAGTCTGTTCTTTTGCAATCACAGCATGCTCAGAAGA +
Preference number: 5 (lower is better)
Translates to: CFYTTLLVGMSCVGN*LGSLFFCNHSMLRR
Trigger: TCTTCTGAGCATGCTGTGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTCATGCCTACGAGAAGAGTGGTGTAGAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCTCCAGTTATTGGGATaGTGGTTTTCTCCCCAAACT +
Preference number: 5 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQELQLLG*WFSPQT
Trigger: AGTTTGGGGAGAAAACCACAATCCCAATAACTGGAG...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp CTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTCTGGTATGGCCGAAGGTCTCATaGTTACAAAAGGGCTTTCCT +
Preference number: 5 (lower is better)
Translates to: LFSSLARARQDPYYQSLVWPKVS*LQKGFP
Trigger: AGGAAAGCCCTTTTGTAACAATGAGACCTTCGGCCA...TACCAGAGATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp TATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCTTCTGCTGCAGAACTaGTATTTCCTCCTTCAACTT +
Preference number: 5 (lower is better)
Translates to: YVEGRAHQHLFSSLARARLLLQN*YFLLQL
Trigger: AAGTTGAAGGAGGAAATACAAGTTCTGCAGCAGAAG...CCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp TATAAACAGACCAAAGGGGGATGCAGCTTTCCCTTGGCGGCTTCATGGCGCAGCCAGAATGGTCGTCATTaGTTTCAAAAAGAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: YKQTKGGCSFPLAASWRSQNGRH*FQKEKQ
Trigger: CTGCTTCTCTTTTTGAAACAAATGACGACCATTCTG...GCTGCGCCATGAAGCCGCCAAGGGAAAGCTGCATCCCCCTTTGGTCTGTTTATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 90 bp TGGCCTTTAATGCTTCATGAAGAAAGGAAGGATCCTGGATGCCTGTaGTTTCTCGCAGCTGATTTAACAGCATCTGGCAGCTCGAGCCAT +
Preference number: 5 (lower is better)
Translates to: WPLMLHEERKDPGCL*FLAADLTASGSSSH
Trigger: ATGGCTCGAGCTGCCAGATGCTGTTAAATCAGCTGCGAGAAATCACAGGCATCCAGGATCCTTCCTTTCTTCATGAAGCATTAAAGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS TCA 90 bp TCTTTTGCAATCACAGCATGCTCAGAAGACAAGCATCGGACCTCATaGGAGGACACTGCTGGAGACTCTTGTGATGTGGAGAAATCCTGT +
Preference number: 5 (lower is better)
Translates to: SFAITACSEDKHRTS*EDTAGDSCDVEKSC
Trigger: ACAGGATTTCTCCACATCACAAGAGTCTCCAGCAGTGTCCTCTCATGAGGTCCGATGCTTGTCTTCTGAGCATGCTGTGATTGCAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp ATCCGCAAACTGTTCCAGAAGGGTCCGTTCTACTACCCTCTTGGGTaGTTCATTTTGGAAAAAGTAGACAAGAACATGCTGAAGGCGAGG +
Preference number: 5 (lower is better)
Translates to: IRKLFQKGPFYYPLG*FILEKVDKNMLKAR
Trigger: CCTCGCCTTCAGCATGTTCTTGTCTACTTTTTCCAAAATGAAGCACCCAAGAGGGTAGTAGAACGGACCCTTCTGGAACAGTTTGCGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp ATCTGTCACACCAGCACAGGGCTGGAAGCCCAGGATGCTTTCTTTTCTTTCACTCTGAACCAACATGTGTaGCCAACATTTTTCAGCCCA +
Preference number: 5 (lower is better)
Translates to: ICHTSTGLEAQDAFFSFTLNQHV*PTFFSP
Trigger: TGGGCTGAAAAATGTTGGCAACACATGTTGGTTCAG...AGTGAAAGAAAAGAAAGCATCCTGGGCTTCCAGCCCTGTGCTGGTGTGACAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTGTGTCCTGCACTGGCTaGTCCTTCGTGAACAAGAAC +
Preference number: 5 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFVSCTG*SFVNKN
Trigger: GTTCTTGTTCACGAAGGACAAGCCAGTGCAGGACAC...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp TCAGTTCTGATGAGTCACCCTTTTGCTGTCAAAGACTGGTGCCTGAAGGGTAATGGGCAGTCTGTTCTTTaGCAATCACAGCATGCTCAG +
Preference number: 5 (lower is better)
Translates to: SVLMSHPFAVKDWCLKGNGQSVL*QSQHAQ
Trigger: CTGAGCATGCTGTGATTGCAAAAGAACAGACTGCCC...ATTACCCTTCAGGCACCAGTCTTTGACAGCAAAAGGGTGACTCATCAGAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp CCTGACGAAGAAGAGGGTCACAGTACATCTGCTCAATCGCCTTCGTaGTGCTCGAGATACAGTTCTTTAGGTCTTGTATATCCTGTTCAA +
Preference number: 5 (lower is better)
Translates to: PDEEEGHSTSAQSPS*CSRYSSLGLVYPVQ
Trigger: TTGAACAGGATATACAAGACCTAAAGAACTGTATCTCGAGCAGCACGAAGGCGATTGAGCAGATGTACTGTGACCCTCTTCTTCGTCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp ACCAGCACCTCTTTTCATCACTGGCAAGAGCCAGGCAAGACCCCTACTACCAATCTTCGGATAAGCTCTTaGCTCTTATACATGTACCTA +
Preference number: 5 (lower is better)
Translates to: TSTSFHHWQEPGKTPTTNLRISS*LLYMYL
Trigger: TAGGTACATGTATAAGAGCAAAGAGCTTATCCGAAG...ATTGGTAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGATGAAAAGAGGTGCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTCTTCTGCTGCAGAACTaGTATTTCCTCCTTCAACTT +
Preference number: 5 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTLLLQN*YFLLQL
Trigger: AAGTTGAAGGAGGAAATACAAGTTCTGCAGCAGAAG...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTCTGGTACTTTCCTTTTaGGAAGAGTTCCAGGCCCGT +
Preference number: 5 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFLVLSF*EEFQAR
Trigger: ACGGGCCTGGAACTCTTCCAAAAAGGAAAGTACCAG...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp AGCCTTATGTGGAAGGAAGGGCTCACCAGCACCTCTTTTCATCACTGGCAAGAGTTTCAGAGGCAGGTTTaGTACTTTCTAACTTCTGCT +
Preference number: 5 (lower is better)
Translates to: SLMWKEGLTSTSFHHWQEFQRQV*YFLTSA
Trigger: AGCAGAAGTTAGAAAGTACAAAACCTGCCTCTGAAA...CTCTTGCCAGTGATGAAAAGAGGTGCTGGTGAGCCCTTCCTTCCACATAAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000213874.2
CDS CCA 90 bp AAGAGACTGATTAAACTCAAATCTGGAGAGTTCAAAGGTCAACACTaGAGGCAGCTTTGTAAACCAACGCTCCTGCCCATACTTCACGGA +
Preference number: 5 (lower is better)
Translates to: KRLIKLKSGEFKGQH*RQLCKPTLLPILHG
Trigger: TCCGTGAAGTATGGGCAGGAGCGTTGGTTTACAAAGCTGCCTCCAGTGTTGACCTTTGAACTCTCCAGATTTGAGTTTAATCAGTCTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTGTAACAGAGATGTCGTaGTATTTGAGCCAGGTCTGC +
Preference number: 5 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFVTEMS*YLSQVC
Trigger: GCAGACCTGGCTCAAATACAACGACATCTCTGTTAC...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTCAGAATGGTCGTCATTaGTTTCAAAAAGAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTQNGRH*FQKEKQ
Trigger: CTGCTTCTCTTTTTGAAACAAATGACGACCATTCTG...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp AATCTCGCTCAGACACCCAATCCCTCTGTCCAGGGAAATCTGTCACAACAGACTATTTCACGGTTACTGTaGAAACTCCTTGAATGGACT +
Preference number: 5 (lower is better)
Translates to: NLAQTPNPSVQGNLSQQTISRLL*KLLEWT
Trigger: AGTCCATTCAAGGAGTTTCAACAGTAACCGTGAAAT...AGTCTGTTGTGACAGATTTCCCTGGACAGAGGGATTGGGTGTCTGAGCGAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 90 bp GACGAAGAAGAGGGTCACAGTACATCTGCTCAATCGCCTTCGTGCTaGTCGAGATACAGTTCTTTAGGTCTTGTATATCCTGTTCAATTT +
Preference number: 5 (lower is better)
Translates to: DEEEGHSTSAQSPSC*SRYSSLGLVYPVQF
Trigger: AAATTGAACAGGATATACAAGACCTAAAGAACTGTATCTCGAGCAGCACGAAGGCGATTGAGCAGATGTACTGTGACCCTCTTCTTCGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 90 bp AGCCTTGGCATTCAGCTCCTTATACTCTTCCATGTTCATGTCATCTaGACCAATTTCCATCAATTTGGCCTGAGCCACCTTCATGATACT +
Preference number: 5 (lower is better)
Translates to: SLGIQLLILFHVHVI*TNFHQFGLSHLHDT
Trigger: AGTATCATGAAGGTGGCTCAGGCCAAATTGATGGAAATTGGTCCAGATGACATGAACATGGAAGAGTATAAGGAGCTGAATGCCAAGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTCTCCAGTTATTGGGATaGTGGTTTTCTCCCCAAACT +
Preference number: 5 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFLQLLG*WFSPQT
Trigger: AGTTTGGGGAGAAAACCACAATCCCAATAACTGGAG...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 90 bp TTCCACTTCTCCTGCAGTCTCATCAGATTCATTAGAAGATGCCTCTaGACTGAAGTGGGGCAAGTTGTCATTGATATACATCAAGCAGTA +
Preference number: 5 (lower is better)
Translates to: FHFSCSLIRFIRRCL*TEVGQVVIDIHQAV
Trigger: TACTGCTTGATGTATATCAATGACAACTTGCCCCACTTCAGTGCAGAGGCATCTTCTAATGAATCTGATGAGACTGCAGGAGAAGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 90 bp TTTTCAGATTTATTCCTGAGATGGCTGTTAACATTAACAGCTAGCTaGAACGCATCCTCCAGCCAATCCAGGAGCTTGTGTGTGAATTCA +
Preference number: 5 (lower is better)
Translates to: FSDLFLRWLLTLTAS*NASSSQSRSLCVNS
Trigger: TGAATTCACACACAAGCTCCTGGATTGGCTGGAGGATGCGTTCCAGCTAGCTGTTAATGTTAACAGCCATCTCAGGAATAAATCTGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS CCA 90 bp ATGGCATCGAGGTCGTCCTTGGAGATGTCGTTATTAATGATCAGGTaGATGCAGGGAATGATCAACTCATTCATTACATTAATGCCCTCT +
Preference number: 5 (lower is better)
Translates to: MASRSSLEMSLLMIR*MQGMINSFITLMPS
Trigger: AGAGGGCATTAATGTAATGAATGAGTTGATCATTCCCTGCATCCACCTGATCATTAATAACGACATCTCCAAGGACGACCTCGATGCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS-3UTR CAA 90 bp AGGATAATTCAAAACCTTAATGCACTGGCTCCTGCCTTCTTCAGTGAAATAGCTAGCCAATCCAGGAGCTaGTGTGTGAATTCACTCACA +
Preference number: 5 (lower is better)
Translates to: RIIQNLNALAPAFFSEIASQSRS*CVNSLT
Trigger: TGTGAGTGAATTCACACACAAGCTCCTGGATTGGCT...AGCTATTTCACTGAAGAAGGCAGGAGCCAGTGCATTAAGGTTTTGAATTATCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS-3UTR CAA 90 bp GACAAAATAACTAGAAACTGCTCCCCTGGCTCAGTTCTGATGAGTCACCCTTTTCTTCGGATAAGCTCTTaGCTCTTATACATGTACCTA +
Preference number: 5 (lower is better)
Translates to: DKITRNCSPGSVLMSHPFLRISS*LLYMYL
Trigger: TAGGTACATGTATAAGAGCAAAGAGCTTATCCGAAG...AAAAGGGTGACTCATCAGAACTGAGCCAGGGGAGCAGTTTCTAGTTATTTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 90 bp TTCTTTAGGTCTTGTATATCCTGTTCAATTTCACTCCGCCACCTCTaGAGACAGGTCTTAACGAAGTTCATTTCTTCATCTGTGACTGTC +
Preference number: 5 (lower is better)
Translates to: FFRSCISCSISLRHL*RQVLTKFISSSVTV
Trigger: GACAGTCACAGATGAAGAAATGAACTTCGTTAAGACCTGTCTTCAGAGGTGGCGGAGTGAAATTGAACAGGATATACAAGACCTAAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 90 bp TGTGACTTCGACAATTTTCAAGGATGTTCTGTGGCAGGTTATAACTaGGAACAAGTCTTCGAAATTCAGGCAACTGAAAGAGAGACTGAA +
Preference number: 5 (lower is better)
Translates to: CDFDNFQGCSVAGYN*EQVFEIQATERETE
Trigger: TTCAGTCTCTCTTTCAGTTGCCTGAATTTCGAAGACTTGTTCTCAGTTATAACCTGCCACAGAACATCCTTGAAAATTGTCGAAGTCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS CCA 90 bp ATTTCTCTTTTCAGTGTGACTTCGACAATTTTCAAGGATGTTCTGTaGCAGGTTATAACTGAGAACAAGTCTTCGAAATTCAGGCAACTG +
Preference number: 5 (lower is better)
Translates to: ISLFSVTSTIFKDVL*QVITENKSSKFRQL
Trigger: CAGTTGCCTGAATTTCGAAGACTTGTTCTCAGTTATAACCTGCCACAGAACATCCTTGAAAATTGTCGAAGTCACACTGAAAAGAGAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 72 bp ACTGGGAATCTCCACTTCAGAGACCTCAGAGTTAGGTaGGGCAGCAGCCTCCGTGTCCCTGGCCTCGGCCGC +
Preference number: 6 (lower is better)
Translates to: TGNLHFRDLRVR*GSSLRVPGLGR
Trigger: GCGGCCGAGGCCAGGGACACGGAGGCTGCTGCCGCACCTAACTCTGAGGTCTCTGAAGTGGAGATTCCCAGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS GCA 72 bp GGGCCCCTTCACCAGCAGGCCAGCGTTGCTCTGGTATaGGTACACCAGGTAGGACAATGCTTCCTGGTACTT +
Preference number: 6 (lower is better)
Translates to: GPLHQQASVALV*VHQVGQCFLVL
Trigger: AAGTACCAGGAAGCATTGTCCTACCTGGTGTACGCATACCAGAGCAACGCTGGCCTGCTGGTGAAGGGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 72 bp CCCTGCTTCAGACCCATCTCGGTCAAAGGTCTGGCGTaGTTTAGCTATGGCCAGGATGACCCCTTGCATGGC +
Preference number: 6 (lower is better)
Translates to: PCFRPISVKGLA*FSYGQDDPLHG
Trigger: GCCATGCAAGGGGTCATCCTGGCCATAGCTAAAGCACGCCAGACCTTTGACCGAGATGGGTCTGAAGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS CAA 90 bp TCGGTCAAAGGTCTGGCGTGCTTTAGCTATGGCCAGGATGACCCCTaGCATGGCAGGGCTCAGCATCACCTCCTCATCATAGCCATCTGC +
Preference number: 6 (lower is better)
Translates to: SVKGLACFSYGQDDP*HGRAQHHLLIIAIC
Trigger: GCAGATGGCTATGATGAGGAGGTGATGCTGAGCCCTGCCATGCAAGGGGTCATCCTGGCCATAGCTAAAGCACGCCAGACCTTTGACCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS GCA 72 bp TTTGAGCCAGGTCTGCCGGGGCTGGTTGTAGATGTATaGCCAGTAGTGTCCTGCACTGGCTTGTCCTTCGTG +
Preference number: 6 (lower is better)
Translates to: FEPGLPGLVVDV*PVVSCTGLSFV
Trigger: CACGAAGGACAAGCCAGTGCAGGACACTACTGGGCATACATCTACAACCAGCCCCGGCAGACCTGGCTCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 72 bp TGCAGGCGTTTCCAGAGACGAGTGAGGAGAGGTAAATaGCCCATTCATCCCCTCAGAGCTGGGAAGAGCATC +
Preference number: 6 (lower is better)
Translates to: CRRFQRRVRRGK*PIHPLRAGKSI
Trigger: GATGCTCTTCCCAGCTCTGAGGGGATGAATGGGCCATTTACCTCTCCTCACTCGTCTCTGGAAACGCCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 72 bp ATAAGCCCTGCTTCAGACCCATCTCGGTCAAAGGTCTaGCGTGCTTTAGCTATGGCCAGGATGACCCCTTGC +
Preference number: 6 (lower is better)
Translates to: ISPASDPSRSKV*RALAMARMTPC
Trigger: GCAAGGGGTCATCCTGGCCATAGCTAAAGCACGCCAGACCTTTGACCGAGATGGGTCTGAAGCAGGGCTTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS TCA 72 bp AAGGAAGGATCCTGGATGCCTGTGATTTCTCGCAGCTaGTTTAACAGCATCTGGCAGCTCGAGCCATGGCCG +
Preference number: 6 (lower is better)
Translates to: KEGSWMPVISRS*FNSIWQLEPWP
Trigger: CGGCCATGGCTCGAGCTGCCAGATGCTGTTAAATCAGCTGCGAGAAATCACAGGCATCCAGGATCCTTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS TCA 72 bp GAGAGCAGCTTTCTGGACTTGAACTTTCCTTGGGTGTaGGGTCAGAAATCGGGCAGTGCACCGAGGGAAGTG +
Preference number: 6 (lower is better)
Translates to: ESSFLDLNFPWV*GQKSGSAPREV
Trigger: CACTTCCCTCGGTGCACTGCCCGATTTCTGACCTCACACCCAAGGAAAGTTCAAGTCCAGAAAGCTGCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 72 bp GTCAACACTGGAGGCAGCTTTGTAAACCAACGCTCCTaGCCATACTTCACGGAACGATCCGAAGGAAGCAGC +
Preference number: 6 (lower is better)
Translates to: VNTGGSFVNQRS*PYFTERSEGSS
Trigger: GCTGCTTCCTTCGGATCGTTCCGTGAAGTATGGGCAGGAGCGTTGGTTTACAAAGCTGCCTCCAGTGTTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 72 bp ATCGGGCAGTGCACCGAGGGAAGTGGTAATGTCACATaGTCAGCACTTCCAGACAGACAGCTTTCAGAGGCA +
Preference number: 6 (lower is better)
Translates to: IGQCTEGSGNVT*SALPDRQLSEA
Trigger: TGCCTCTGAAAGCTGTCTGTCTGGAAGTGCTGAGCATGTGACATTACCACTTCCCTCGGTGCACTGCCCGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 72 bp GAAGTTCATTTCTTCATCTGTGACTGTCCGAGGAGCTaGGGGTGCAGGCGTTTCCAGAGACGAGTGAGGAGA +
Preference number: 6 (lower is better)
Translates to: EVHFFICDCPRS*GCRRFQRRVRR
Trigger: TCTCCTCACTCGTCTCTGGAAACGCCTGCACCCCCAGCTCCTCGGACAGTCACAGATGAAGAAATGAACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 72 bp GAAGGCGAGGGTCACTGTGAGAGGTGGGTGTCTCTTTaGCAAGCTGATAGAGCCTGGAGTACTCCTCATGAA +
Preference number: 6 (lower is better)
Translates to: EGEGHCERWVSL*QADRAWSTPHE
Trigger: TTCATGAGGAGTACTCCAGGCTCTATCAGCTTGCCAAAGAGACACCCACCTCTCACAGTGACCCTCGCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 72 bp AAGCAGCCTTGGCATTCAGCTCCAGAAGGCATTTTCTaGGGTATAAGGCAATCACAGACTCCTTCACGCCCC +
Preference number: 6 (lower is better)
Translates to: KQPWHSAPEGIF*GIRQSQTPSRP
Trigger: GGGGCGTGAAGGAGTCTGTGATTGCCTTATACCGCAGAAAATGCCTTCTGGAGCTGAATGCCAAGGCTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 72 bp CCTGGAGTACTCCTCATGAAATGCCTTAATAAGCCCTaGTTCAGACCCATCTCGGTCAAAGGTCTGGCGTGC +
Preference number: 6 (lower is better)
Translates to: PGVLLMKCLNKP*FRPISVKGLAC
Trigger: GCACGCCAGACCTTTGACCGAGATGGGTCTGAAGCAGGGCTTATTAAGGCATTTCATGAGGAGTACTCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS CCA 72 bp GATCCGAAGGAAGCAGCGCGATGTCACCTTCCACCATaGCCCCTTCCAAACATTCGTCTAAGTTGTGGTAAC +
Preference number: 6 (lower is better)
Translates to: DPKEAARCHLPP*PLPNIRLSCGN
Trigger: GTTACCACAACTTAGACGAATGTTTGGAAGGGGCCATGGTGGAAGGTGACATCGCGCTGCTTCCTTCGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS CAA 90 bp CGTAGGCATGAGCTGTGTTGGCAATTGCCTGGGCAGTCTGTTCTTTaGCAATCACAGCATGCTCAGAAGACAAGCATCGGACCTCATGAG +
Preference number: 6 (lower is better)
Translates to: RRHELCWQLPGQSVL*QSQHAQKTSIGPHE
Trigger: CTCATGAGGTCCGATGCTTGTCTTCTGAGCATGCTGTGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTCATGCCTACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CAA 90 bp GAGCACCAGTGGTTCCTCATGACCTCGATGGCATCGAGGTCGTCCTaGGAGATGTCGTTATTAATGATCAGGTGGATGCAGGGAATGATC +
Preference number: 6 (lower is better)
Translates to: EHQWFLMTSMASRSS*EMSLLMIRWMQGMI
Trigger: GATCATTCCCTGCATCCACCTGATCATTAATAACGACATCTCCAAGGACGACCTCGATGCCATCGAGGTCATGAGGAACCACTGGTGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 72 bp GCTGAAACCTCCAGTTATCTTCCTGAATGTACTGCCTaGGTTCCACAGACAGGGCTTCCACTTCTCCTGCAG +
Preference number: 6 (lower is better)
Translates to: AETSSYLPECTA*VPQTGLPLLLQ
Trigger: CTGCAGGAGAAGTGGAAGCCCTGTCTGTGGAACTCAGGCAGTACATTCAGGAAGATAACTGGAGGTTTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 72 bp ATCACAGCATGCTCAGAAGACAAGCATCGGACCTCATaGGAGGACACTGCTGGAGACTCTTGTGATGTGGAG +
Preference number: 6 (lower is better)
Translates to: ITACSEDKHRTS*EDTAGDSCDVE
Trigger: CTCCACATCACAAGAGTCTCCAGCAGTGTCCTCTCATGAGGTCCGATGCTTGTCTTCTGAGCATGCTGTGAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CAA 90 bp CTGCTTCTACACCACTCTTCTCGTAGGCATGAGCTGTGTTGGCAATaGCCTGGGCAGTCTGTTCTTTTGCAATCACAGCATGCTCAGAAG +
Preference number: 6 (lower is better)
Translates to: LLLHHSSRRHELCWQ*PGQSVLLQSQHAQK
Trigger: CTTCTGAGCATGCTGTGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTCATGCCTACGAGAAGAGTGGTGTAGAAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 72 bp GGTACTTCCAGCATTCTGAGAGCAGCTTTCTGGACTTaGACTTTCCTTGGGTGTGAGGTCAGAAATCGGGCA +
Preference number: 6 (lower is better)
Translates to: GTSSILRAAFWT*TFLGCEVRNRA
Trigger: TGCCCGATTTCTGACCTCACACCCAAGGAAAGTTCAAGTCCAGAAAGCTGCTCTCAGAATGCTGGAAGTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 72 bp ACCACTCTTCTCGTAGGCATGAGCTGTGTTGGCAATTaGCTGGGCAGTCTGTTCTTTTGCAATCACAGCATG +
Preference number: 6 (lower is better)
Translates to: TTLLVGMSCVGN*LGSLFFCNHSM
Trigger: CATGCTGTGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTCATGCCTACGAGAAGAGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 72 bp CTTCTTGGGCTCAGCTTCATTATGCTCACTCAAGGCTaGTTCTACACCACTCTTCTCGTAGGCATGAGCTGT +
Preference number: 6 (lower is better)
Translates to: LLGLSFIMLTQG*FYTTLLVGMSC
Trigger: ACAGCTCATGCCTACGAGAAGAGTGGTGTAGAAGCAGCCTTGAGTGAGCATAATGAAGCTGAGCCCAAGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000215856.2
CDS CCA 72 bp GAGATCTTTGCTGGTAGCACTCTCTTCTACTTCAGATaGTTCTGCAGCAGTTGTGTCGTGACTGGGCTCCTT +
Preference number: 6 (lower is better)
Translates to: EIFAGSTLFYFR*FCSSCVVTGLL
Trigger: AAGGAGCCCAGTCACGACACAACTGCTGCAGAACCATCTGAAGTAGAAGAGAGTGCTACCAGCAAAGATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215788.2
CDS CAA 72 bp GAGCTGTGTTGGCAATTGCCTGGGCAGTCTGTTCTTTaGCAATCACAGCATGCTCAGAAGACAAGCATCGGA +
Preference number: 6 (lower is better)
Translates to: ELCWQLPGQSVL*QSQHAQKTSIG
Trigger: TCCGATGCTTGTCTTCTGAGCATGCTGTGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CAA 72 bp CACCACTCTTCTCGTAGGCATGAGCTGTGTTGGCAATaGCCTGGGCAGTCTGTTCTTTTGCAATCACAGCAT +
Preference number: 6 (lower is better)
Translates to: HHSSRRHELCWQ*PGQSVLLQSQH
Trigger: ATGCTGTGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTCATGCCTACGAGAAGAGTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CAA 72 bp TGGTTCCTCATGACCTCGATGGCATCGAGGTCGTCCTaGGAGATGTCGTTATTAATGATCAGGTGGATGCAG +
Preference number: 6 (lower is better)
Translates to: WFLMTSMASRSS*EMSLLMIRWMQ
Trigger: CTGCATCCACCTGATCATTAATAACGACATCTCCAAGGACGACCTCGATGCCATCGAGGTCATGAGGAACCA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 72 bp TCTTCTACTTCAGATGGTTCTGCAGCAGTTGTGTCGTaGCTGGGCTCCTTAACTCTTTGGTCTGTGAGAAGG +
Preference number: 6 (lower is better)
Translates to: SSTSDGSAAVVS*LGSLTLWSVRR
Trigger: CCTTCTCACAGACCAAAGAGTTAAGGAGCCCAGTCACGACACAACTGCTGCAGAACCATCTGAAGTAGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215788.2
CDS GCA 72 bp TTTGCTGGTAGCACTCTCTTCTACTTCAGATGGTTCTaGAGCAGTTGTGTCGTGACTGGGCTCCTTAACTCT +
Preference number: 6 (lower is better)
Translates to: FAGSTLFYFRWF*SSCVVTGLLNS
Trigger: AGAGTTAAGGAGCCCAGTCACGACACAACTGCTGCAGAACCATCTGAAGTAGAAGAGAGTGCTACCAGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215788.2
CDS GCA 72 bp GGGCCCGAGCCGTACTTCACATACCTTTCTAACTTCTaGTGCAGAACTTGTATTTCCTCCTTCAACTTCCGA +
Preference number: 6 (lower is better)
Translates to: GPEPYFTYLSNF*CRTCISSFNFR
Trigger: TCGGAAGTTGAAGGAGGAAATACAAGTTCTGCAGCAGAAGTTAGAAAGGTATGTGAAGTACGGCTCGGGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000215856.2
CDS GCA 72 bp AGCGTTGCTCTGGTATGCGTACACCAGGTAGGACAATaGTTCCTGGTACTTTCCTTTTTGGAAGAGTTCCAG +
Preference number: 6 (lower is better)
Translates to: SVALVCVHQVGQ*FLVLSFLEEFQ
Trigger: CTGGAACTCTTCCAAAAAGGAAAGTACCAGGAAGCATTGTCCTACCTGGTGTACGCATACCAGAGCAACGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS CCA 72 bp CTTCTACACCACTCTTCTCGTAGGCATGAGCTGTGTTaGCAATTGCCTGGGCAGTCTGTTCTTTTGCAATCA +
Preference number: 6 (lower is better)
Translates to: LLHHSSRRHELC*QLPGQSVLLQS
Trigger: TGATTGCAAAAGAACAGACTGCCCAGGCAATTGCCAACACAGCTCATGCCTACGAGAAGAGTGGTGTAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 72 bp TCACGGTTACTGTTGAAACTCCTTGAATGGACTCCATaGCAGCTGCAAACCGGTTGCAAAGATCATAGGGAG +
Preference number: 6 (lower is better)
Translates to: SRLLLKLLEWTP*QLQTGCKDHRE
Trigger: CTCCCTATGATCTTTGCAACCGGTTTGCAGCTGTCATGGAGTCCATTCAAGGAGTTTCAACAGTAACCGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS GCA 72 bp CCCGAGCCGTACTTCACATACCTTTCTAACTTCTGCTaGAGAACTTGTATTTCCTCCTTCAACTTCCGAACG +
Preference number: 6 (lower is better)
Translates to: PEPYFTYLSNFC*RTCISSFNFRT
Trigger: CGTTCGGAAGTTGAAGGAGGAAATACAAGTTCTGCAGCAGAAGTTAGAAAGGTATGTGAAGTACGGCTCGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000215856.2
CDS CCA 72 bp TCCTTAACTCTTTGGTCTGTGAGAAGGCTGACAGCCTaGGTGATGTCACCATTACTGGCCTTTAATGCTTCA +
Preference number: 6 (lower is better)
Translates to: SLTLWSVRRLTA*VMSPLLAFNAS
Trigger: TGAAGCATTAAAGGCCAGTAATGGTGACATCACCCAGGCTGTCAGCCTTCTCACAGACCAAAGAGTTAAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS CCA 72 bp TTATTCCTGAGATGGCTGTTAACATTAACAGCTAGCTaGAACGCATCCTCCAGCCAATCCAGGAGCTTGTGT +
Preference number: 6 (lower is better)
Translates to: LFLRWLLTLTAS*NASSSQSRSLC
Trigger: ACACAAGCTCCTGGATTGGCTGGAGGATGCGTTCCAGCTAGCTGTTAATGTTAACAGCCATCTCAGGAATAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 72 bp GAAGAGGGTCACAGTACATCTGCTCAATCGCCTTCGTaGTGCTCGAGATACAGTTCTTTAGGTCTTGTATAT +
Preference number: 6 (lower is better)
Translates to: EEGHSTSAQSPS*CSRYSSLGLVY
Trigger: ATATACAAGACCTAAAGAACTGTATCTCGAGCAGCACGAAGGCGATTGAGCAGATGTACTGTGACCCTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 72 bp ATTAAACTCAAATCTGGAGAGTTCAAAGGTCAACACTaGAGGCAGCTTTGTAAACCAACGCTCCTGCCCATA +
Preference number: 6 (lower is better)
Translates to: IKLKSGEFKGQH*RQLCKPTLLPI
Trigger: TATGGGCAGGAGCGTTGGTTTACAAAGCTGCCTCCAGTGTTGACCTTTGAACTCTCCAGATTTGAGTTTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS GCA 72 bp TCCTGCAGTCTCATCAGATTCATTAGAAGATGCCTCTaGACTGAAGTGGGGCAAGTTGTCATTGATATACAT +
Preference number: 6 (lower is better)
Translates to: SCSLIRFIRRCL*TEVGQVVIDIH
Trigger: ATGTATATCAATGACAACTTGCCCCACTTCAGTGCAGAGGCATCTTCTAATGAATCTGATGAGACTGCAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS TCA 72 bp TTCATGTCATCTGGACCAATTTCCATCAATTTGGCCTaGGCCACCTTCATGATACTGATAGATCTCTCATCA +
Preference number: 6 (lower is better)
Translates to: FMSSGPISINLA*ATFMILIDLSS
Trigger: TGATGAGAGATCTATCAGTATCATGAAGGTGGCTCAGGCCAAATTGATGGAAATTGGTCCAGATGACATGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CAA 72 bp GATCCAGGGCTGCAGAAGGGTCTACAAATTTTCGATTaGATCCCAACAACAGAGCAAATAAATACTGAAGCT +
Preference number: 6 (lower is better)
Translates to: DPGLQKGLQIFD*IPTTEQINTEA
Trigger: AGCTTCAGTATTTATTTGCTCTGTTGTTGGGATCAAATCGAAAATTTGTAGACCCTTCTGCAGCCCTGGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
CDS TCA 72 bp TCTTGTATATCCTGTTCAATTTCACTCCGCCACCTCTaGAGACAGGTCTTAACGAAGTTCATTTCTTCATCT +
Preference number: 6 (lower is better)
Translates to: SCISCSISLRHL*RQVLTKFISSS
Trigger: AGATGAAGAAATGAACTTCGTTAAGACCTGTCTTCAGAGGTGGCGGAGTGAAATTGAACAGGATATACAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2
CDS CCA 72 bp AGGTCGTCCTTGGAGATGTCGTTATTAATGATCAGGTaGATGCAGGGAATGATCAACTCATTCATTACATTA +
Preference number: 6 (lower is better)
Translates to: RSSLEMSLLMIR*MQGMINSFITL
Trigger: TAATGTAATGAATGAGTTGATCATTCCCTGCATCCACCTGATCATTAATAACGACATCTCCAAGGACGACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000047349.8
ENSMUST00000213874.2
ENSMUST00000215856.2