RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USP25 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022867

Ensembl transcript IDs: ENSMUST00000023580.8, ENSMUST00000239066.2

Found 261 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp AACAAGGTGAGTGCCATGCGATTCTCGGGTTTATTGTTTGCAGTCTaGGCTAAGGTCGGCATAGTCGTTTTGTCTTTTGCAGTTATTAAA +
Preference number: 2 (lower is better)
Translates to: NKVSAMRFSGLLFAV*AKVGIVVLSFAVIK
Trigger: TTTAATAACTGCAAAAGACAAAACGACTATGCCGACCTTAGCCAAGACTGCAAACAATAAACCCGAGAATCGCATGGCACTCACCTTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
3UTR-3UTR TCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTCGGATAAAACAAGGTaGGTGCCATGCGATTCTCGG +
Preference number: 2 (lower is better)
Translates to: LLYASSNVHPMAKLMYITSDKTR*VPCDSR
Trigger: CCGAGAATCGCATGGCACTCACCTTGTTTTATCCGA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
3UTR-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTAGGTCCCAGACTAAATaGAAAGCTGTTTGTAAAGAA +
Preference number: 2 (lower is better)
Translates to: LLYASSNVHPMAKLMYITRSQTK*KAVCKE
Trigger: TTCTTTACAAACAGCTTTCCATTTAGTCTGGGACCT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
3UTR-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCGATTCTCGGGTTTATaGTTTGCAGTCTTGGCTAAG +
Preference number: 3 (lower is better)
Translates to: LLYASSNVHPMAKLMYITRFSGL*FAVLAK
Trigger: CTTAGCCAAGACTGCAAACAATAAACCCGAGAATCG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
3UTR-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGTCGGCATAGTCGTTTaGTCTTTTGCAGTTATTAAA +
Preference number: 3 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKVGIVV*SFAVIK
Trigger: TTTAATAACTGCAAAAGACAAAACGACTATGCCGAC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
3UTR GCA 72 bp GTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTaGCATGCGATTCTCGGGTTTATTGTTTGCAGTCTT +
Preference number: 3 (lower is better)
Translates to: VIIHWFRIKQGE*HAILGFIVCSL
Trigger: AAGACTGCAAACAATAAACCCGAGAATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
3UTR-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTGTCGGCATAGTCGTTTaGTCTTTTGCAGTTATTAAA +
Preference number: 3 (lower is better)
Translates to: LLYASSNVHPMAKLMYITVGIVV*SFAVIK
Trigger: TTTAATAACTGCAAAAGACAAAACGACTATGCCGAC...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGGTCTGCTGGTGCTTCTaGGCCGCGCTCTGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVVCWCF*AALCCS
Trigger: GCTGCAGCAGAGCGCGGCGCAGAAGCACCAGCAGAC...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTGCGCCGCGCTCTGCTaGAGCACATTCTGCTCCACG +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVCAALC*STFCST
Trigger: CGTGGAGCAGAATGTGCTGCAGCAGAGCGCGGCGCA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTTATGCCCGTCTCCCTaGATGCCCTGTTTGACTCCG +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVLCPSP*MPCLTP
Trigger: CGGAGTCAAACAGGGCATTCAGGGAGACGGGCATAA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTGCCTTGGTGCCGGATaGATGGGCAAATCTGGAGGT +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVCLGAG*MGKSGG
Trigger: ACCTCCAGATTTGCCCATGCATCCGGCACCAAGGCA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCATCAACGGGGGAAGTaGACACAGGTTTACTGGAGG +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVHQRGK*TQVYWR
Trigger: CCTCCAGTAAACCTGTGTGCACTTCCCCCGTTGATG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTCTTCCTCTGTGATGTaGCTTGGTGCCGGATGCATG +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVSSSVM*LGAGCM
Trigger: CATGCATCCGGCACCAAGGCACATCACAGAGGAAGA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTCCACCTCTACACCTTaGTGGCTAGAAGGTGGTTGG +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVSTSTP*WLEGGW
Trigger: CCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTTCTTGCCCCAGGTATaGACACCAGCGATTCCTCAT +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVFLPQV*TPAIPH
Trigger: ATGAGGAATCGCTGGTGTTCATACCTGGGGCAAGAA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGATGCATGGGCAAATCTaGAGGTATCCGAGACTGAGT +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVMHGQI*RYPRLS
Trigger: ACTCAGTCTCGGATACCTCCAGATTTGCCCATGCAT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGGGTGGAGTATCTTCTTaGGCCAACTTAACCAGCCTA +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVGGVSS*ANLTSL
Trigger: TAGGCTGGTTAAGTTGGCCCAAGAAGATACTCCACC...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTTTCGGGGTAAATCTTaGGCATTTGATGGAGGCTTG +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVFRGKS*AFDGGL
Trigger: CAAGCCTCCATCAAATGCTCAAGATTTACCCCGAAA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGGAATCTCAACTGCTCTaGACGGATCAACATACTTCC +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVESQLL*TDQHTS
Trigger: GGAAGTATGTTGATCCGTCCAGAGCAGTTGAGATTC...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCCAATGGGAATCTTTTaGGACCGGAACCATAGCTTA +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVPMGIF*DRNHSL
Trigger: TAAGCTATGGTTCCGGTCCCAAAAGATTCCCATTGG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGAAGGCAATCGCTCTCTaGAGATCATCTTTGTCATCT +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVKAIAL*RSSLSS
Trigger: AGATGACAAAGATGATCTTCAGAGAGCGATTGCCTT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCTTCAGAATCTCAACTaGTCTGGACGGATCAACATA +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVLQNLN*SGRINI
Trigger: TATGTTGATCCGTCCAGAGCAGTTGAGATTCTGAAG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGAATTTAATTGCCGACTaGAAAACTGTCTCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVNLIAD*KTVSGP
Trigger: AGGGCCAGAGACAGTTTTGCAGTCGGCAATTAAATT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023580.8
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTCTTCAGCTTTCATTTaGAAGGCATCTTCCAACCAG +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVSSAFI*KASSNQ
Trigger: CTGGTTGGAAGATGCCTTCCAAATGAAAGCTGAAGA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTACCATAGGGTTCTTTaGCTTCTCTTCATCCGTTTC +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVYHRVL*LLFIRF
Trigger: GAAACGGATGAAGAGAAGCCAAAGAACCCTATGGTA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGACAAATTTCCCTAAGTaGGGAATCTCCACCTCTACA +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVTNFPK*GISTST
Trigger: TGTAGAGGTGGAGATTCCCCACTTAGGGAAATTTGT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGGAGCCGGGCAGATCTaGAGCACAGGGTCCCTGCTG +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKGAGQI*STGSLL
Trigger: CAGCAGGGACCCTGTGCTTCAGATCTGCCCGGCTCC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGATTTGTCCGAGTACATaGGTTCAATTGTTCGATGGA +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVICPST*VQLFDG
Trigger: TCCATCGAACAATTGAACTCATGTACTCGGACAAAT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGATTCTTCAGACCGACTaGAGCTTTCTCTTGTCTTTT +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVILQTD*SFLLSF
Trigger: AAAAGACAAGAGAAAGCTCCAGTCGGTCTGAAGAAT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCAACATACTTCCTCTTaGTACCAACAAGAAGTGCAA +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVQHTSS*YQQEVQ
Trigger: TTGCACTTCTTGTTGGTACCAAGAGGAAGTATGTTG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGATAATCTGTTTCTGGTaGAGTATCTTCTTGGGCCAA +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVIICFW*SIFLGQ
Trigger: TTGGCCCAAGAAGATACTCCACCAGAAACAGATTAT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCTTTGTCATCTCCAGTaGGATCAATTACATTTGCAT +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVLCHLQ*DQLHLH
Trigger: ATGCAAATGTAATTGATCTCACTGGAGATGACAAAG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATGCGCCGCGCTCTGCTaGAGCACATTCTGCTCCACG +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKCAALC*STFCST
Trigger: CGTGGAGCAGAATGTGCTGCAGCAGAGCGCGGCGCA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGATTTCCAGTTTGGCTTaGGCAACTTTCATTATGTTG +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVISSLA*ATFIML
Trigger: CAACATAATGAAAGTTGCCCAAGCCAAACTGGAAAT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATTCTGCGCCGCGCTCTaGTGCAGCACATTCTGCTCC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKFCAAL*CSTFCS
Trigger: GGAGCAGAATGTGCTGCAGCAGAGCGCGGCGCAGAA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGAATGATTTTCTTTGGTaGCTGGTTCTGGATAAAGTA +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVNDFLW*LVLDKV
Trigger: TACTTTATCCAGAACCAGGCACCAAAGAAAATCATT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGGAATTTCTTATAATCTaGATGCCACTCCTCATATTC +
Preference number: 4 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVEFLII*MPLLIF
Trigger: GAATATGAGGAGTGGCATGCAGATTATAAGAAATTC...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGGAGCCGGGCAGATCTaGAGCACAGGGTCCCTGCTG +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIGAGQI*STGSLL
Trigger: CAGCAGGGACCCTGTGCTTCAGATCTGCCCGGCTCC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGTCTGCTGGTGCTTCTaGGCCGCGCTCTGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIVCWCF*AALCCS
Trigger: GCTGCAGCAGAGCGCGGCGCAGAAGCACCAGCAGAC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACCTGAATGCCCTGTTTaGCTCCGCCAAACTCAAGGC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKPECPV*LRQTQG
Trigger: GCCTTGAGTTTGGCGGAGTCAAACAGGGCATTCAGG...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGAAGCACAGGGTCCCTaGTGTTCTGTTGTGCTTGGT +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKEAQGP*CSVVLG
Trigger: ACCAAGCACAACAGAACAGCAGGGACCCTGTGCTTC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATTCAAAAATGTCTGCTaGTGCTTCTGCGCCGCGCTC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKFKNVC*CFCAAL
Trigger: GAGCGCGGCGCAGAAGCACCAGCAGACATTTTTGAA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCTCCTGCTTGTGCTGTaGTGGCCGAAGCCTCTGCTT +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITLLLVL*WPKPLL
Trigger: AAGCAGAGGCTTCGGCCACCACAGCACAAGCAGGAG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
3UTR CAA 72 bp AGTGCCATGCGATTCTCGGGTTTATTGTTTGCAGTCTaGGCTAAGGTCGGCATAGTCGTTTTGTCTTTTGCA +
Preference number: 4 (lower is better)
Translates to: SAMRFSGLLFAV*AKVGIVVLSFA
Trigger: TGCAAAAGACAAAACGACTATGCCGACCTTAGCCAAGACTGCAAACAATAAACCCGAGAATCGCATGGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTTATGCCCGTCTCCCTaGATGCCCTGTTTGACTCCG +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITLCPSP*MPCLTP
Trigger: CGGAGTCAAACAGGGCATTCAGGGAGACGGGCATAA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGGTCTTGGCATTCTTTaGAGTGAGGAAGGCTACTGC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKGLGIL*SEEGYC
Trigger: GCAGTAGCCTTCCTCACTGCAAAGAATGCCAAGACC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTGCCTCCAGGCACTCATaGAGGTCTTTGAACCCGTTC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITASRHS*RSLNPF
Trigger: GAACGGGTTCAAAGACCTGCATGAGTGCCTGGAGGC...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCTCTGTGATGTGCCTTaGTGCCGGATGCATGGGCAA +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITLCDVP*CRMHGQ
Trigger: TTGCCCATGCATCCGGCACCAAGGCACATCACAGAG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTCCTGAATGCCCTGTTTaGCTCCGCCAAACTCAAGGC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIPECPV*LRQTQG
Trigger: GCCTTGAGTTTGGCGGAGTCAAACAGGGCATTCAGG...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCTCTTCTGTAATGTaGTATCAGCTCCCCATCGTG +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKLSSVM*YQLPIV
Trigger: CACGATGGGGAGCTGATATCACATTACAGAAGAGAG...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGCCTCCAGGCACTCATaGAGGTCTTTGAACCCGTTC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIASRHS*RSLNPF
Trigger: GAACGGGTTCAAAGACCTGCATGAGTGCCTGGAGGC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCATCAACGGGGGAAGTaGACACAGGTTTACTGGAGG +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITHQRGK*TQVYWR
Trigger: CCTCCAGTAAACCTGTGTGCACTTCCCCCGTTGATG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAATGCATGGGCAAATCTaGAGGTATCCGAGACTGAGT +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKMHGQI*RYPRLS
Trigger: ACTCAGTCTCGGATACCTCCAGATTTGCCCATGCAT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATGGCATTCTTTGCAGTaGGGAAGGCTACTGCTAATT +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKWHSLQ*GRLLLI
Trigger: AATTAGCAGTAGCCTTCCTCACTGCAAAGAATGCCA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATTTCGGGGTAAATCTTaGGCATTTGATGGAGGCTTG +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKFRGKS*AFDGGL
Trigger: CAAGCCTCCATCAAATGCTCAAGATTTACCCCGAAA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTTCTTGCCCCAGGTATaGACACCAGCGATTCCTCAT +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITFLPQV*TPAIPH
Trigger: ATGAGGAATCGCTGGTGTTCATACCTGGGGCAAGAA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAAATTACATTTGCATCTaGCTGGCTTCCCACGCTGAT +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKNYICI*LASHAD
Trigger: ATCAGCGTGGGAAGCCAGGCAGATGCAAATGTAATT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGAGATCAATTACATTTaGATCTGCCTGGCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKEINYI*ICLASH
Trigger: GTGGGAAGCCAGGCAGATGCAAATGTAATTGATCTC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAAATTCAGTGAACCAATaGTCCTGGCCTGACTTTCCT +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKNSVNQ*SWPDFP
Trigger: AGGAAAGTCAGGCCAGGAGCATTGGTTCACTGAATT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGAAGCACAGGGTCCCTaGTGTTCTGTTGTGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIEAQGP*CSVVLG
Trigger: ACCAAGCACAACAGAACAGCAGGGACCCTGTGCTTC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTGTGATGTGCCTTGGTaGCGGATGCATGGGCAAATC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAICDVPW*RMHGQI
Trigger: GATTTGCCCATGCATCCGGCACCAAGGCACATCACA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTCTTCCTCTGTGATGTaGCTTGGTGCCGGATGCATG +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAISSSVM*LGAGCM
Trigger: CATGCATCCGGCACCAAGGCACATCACAGAGGAAGA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTTTTCTTGGAGGTTTaGTTCCATTTCTTGCCCCAG +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKLFLEV*FHFLPQ
Trigger: CTGGGGCAAGAAATGGAAGCAAACCTCCAAGAAAAG...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTGCCTTAAAGAACCCTaGTTCAGGGCCACACCTGTC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAICLKEP*FRATPV
Trigger: GACAGGTGTGGCCCTGAAGCAGGGTTCTTTAAGGCA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTTCAAAAATGTCTGCTaGTGCTTCTGCGCCGCGCTC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIFKNVC*CFCAAL
Trigger: GAGCGCGGCGCAGAAGCACCAGCAGACATTTTTGAA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTACATTTGCATCTGCCTaGCTTCCCACGCTGATGTAC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITTFASA*LPTLMY
Trigger: GTACATCAGCGTGGGAAGCCAGGCAGATGCAAATGT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACCAATGGGAATCTTTTaGGACCGGAACCATAGCTTA +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKPMGIF*DRNHSL
Trigger: TAAGCTATGGTTCCGGTCCCAAAAGATTCCCATTGG...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATGCACACAGGTTTACTaGAGGCAAACTCCAATGCAT +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKCTQVY*RQTPMH
Trigger: ATGCATTGGAGTTTGCCTCCAGTAAACCTGTGTGCA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTTGGTGCCGGATGCATaGGCAAATCTGGAGGTATCC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAILVPDA*ANLEVS
Trigger: GGATACCTCCAGATTTGCCCATGCATCCGGCACCAA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTACCTCTACACCTTGCTaGCTAGAAGGTGGTTGGCTC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAITSTPC*LEGGWL
Trigger: GAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAAAGGCAATCGCTCTCTaGAGATCATCTTTGTCATCT +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKKAIAL*RSSLSS
Trigger: AGATGACAAAGATGATCTTCAGAGAGCGATTGCCTT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCACATCTTGCTGCTGTaGGTCATTGGATTTGAAGGC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITHILLL*VIGFEG
Trigger: GCCTTCAAATCCAATGACTCACAGCAGCAAGATGTG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGGTACCAACAAGAAGTaGAAACAGATACCTCAGTTC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKGTNKK*KQIPQF
Trigger: GAACTGAGGTATCTGTTTGCACTTCTTGTTGGTACC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTTCAGAATCTCAACTaGTCTGGACGGATCAACATA +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKLQNLN*SGRINI
Trigger: TATGTTGATCCGTCCAGAGCAGTTGAGATTCTGAAG...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTGATGGATTCTGGATATaGTTTCCTGCAGATCTCGCG +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITDGFWI*FPADLA
Trigger: CGCGAGATCTGCAGGAAAGCATATCCAGAATCCATC...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAATTCCAACAAGGGCCTaGCCAGTCTCTTTATTAAAC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKIPTRA*PVSLLN
Trigger: GTTTAATAAAGAGACTGGGCAGGCCCTTGTTGGAAT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTCCTTCAGGGCTTGTTaGAGTATCTGGGCGTCATTA +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITSFRAC*SIWASL
Trigger: TAATGACGCCCAGATACTCCAACAAGCCCTGAAGGA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTACATTTGCATCTGCCTaGCTTCCCACGCTGATGTAC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAITFASA*LPTLMY
Trigger: GTACATCAGCGTGGGAAGCCAGGCAGATGCAAATGT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATTAAGCAGTATGCACTaGCATTTCGATAACCACCGA +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKLSSMH*HFDNHR
Trigger: TCGGTGGTTATCGAAATGCCAGTGCATACTGCTTAA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTCCTTCTCAAAGCGCTaGTTGTCCTCCTCAACAAAG +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITSFSKR*LSSSTK
Trigger: CTTTGTTGAGGAGGACAACCAGCGCTTTGAGAAGGA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTGCAAAACTGTCTCTaGCCCTTTATCTTCAAGATC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKLQNCL*PFIFKI
Trigger: GATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCAG...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAACGATAATCTGTTTCTaGTGGAGTATCTTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKTIICF*WSIFLG
Trigger: GCCCAAGAAGATACTCCACCAGAAACAGATTATCGT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTAAGGTGGTTGGCTCGTaGTGTTTGCAGGTTTCGACT +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIKVVGS*CLQVST
Trigger: AGTCGAAACCTGCAAACACCACGAGCCAACCACCTT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTCACATCTTGCTGCTGTaGGTCATTGGATTTGAAGGC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIHILLL*VIGFEG
Trigger: GCCTTCAAATCCAATGACTCACAGCAGCAAGATGTG...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTCTCTCTTCTGTAATGTaGTATCAGCTCCCCATCGTG +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAILSSVM*YQLPIV
Trigger: CACGATGGGGAGCTGATATCACATTACAGAAGAGAG...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTTGGCAGAAAATCCGTaGGCTTTTCTTGGAGGTTTG +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITLAENP*AFLGGL
Trigger: CAAACCTCCAAGAAAAGCTCACGGATTTTCTGCCAA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTGAGATCAATTACATTTaGATCTGCCTGGCTTCCCAC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITEINYI*ICLASH
Trigger: GTGGGAAGCCAGGCAGATGCAAATGTAATTGATCTC...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGATGGATTCTGGATATaGTTTCCTGCAGATCTCGCG +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIDGFWI*FPADLA
Trigger: CGCGAGATCTGCAGGAAAGCATATCCAGAATCCATC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTTTGCTTCCATTTCTTaGCCCAGGTATGAACACCAG +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITFASIS*PRYEHQ
Trigger: CTGGTGTTCATACCTGGGGCAAGAAATGGAAGCAAA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTGCTTGTTGGAGTATCTaGGCGTCATTAATCCCAGTA +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITACWSI*ASLIPV
Trigger: TACTGGGATTAATGACGCCCAGATACTCCAACAAGC...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATTGTTCGATGGATTCTaGATATGCTTTCCTGCAGAT +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKLFDGF*ICFPAD
Trigger: ATCTGCAGGAAAGCATATCCAGAATCCATCGAACAA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTCCTTCTCAAAGCGCTaGTTGTCCTCCTCAACAAAG +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAISFSKR*LSSSTK
Trigger: CTTTGTTGAGGAGGACAACCAGCGCTTTGAGAAGGA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGGTGGAGTATCTTCTTaGGCCAACTTAACCAGCCTA +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIGGVSS*ANLTSL
Trigger: TAGGCTGGTTAAGTTGGCCCAAGAAGATACTCCACC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAATAATCTGTTTCTGGTaGAGTATCTTCTTGGGCCAA +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKIICFW*SIFLGQ
Trigger: TTGGCCCAAGAAGATACTCCACCAGAAACAGATTAT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTGGCATTCTTTGCAGTaGGGAAGGCTACTGCTAATT +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIWHSLQ*GRLLLI
Trigger: AATTAGCAGTAGCCTTCCTCACTGCAAAGAATGCCA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR TCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTTGGCAGAAAATCCGTaGGCTTTTCTTGGAGGTTTG +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAILAENP*AFLGGL
Trigger: CAAACCTCCAAGAAAAGCTCACGGATTTTCTGCCAA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTAATTACATTTGCATCTaGCTGGCTTCCCACGCTGAT +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAINYICI*LASHAD
Trigger: ATCAGCGTGGGAAGCCAGGCAGATGCAAATGTAATT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTAATTCAGTGAACCAATaGTCCTGGCCTGACTTTCCT +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAINSVNQ*SWPDFP
Trigger: AGGAAAGTCAGGCCAGGAGCATTGGTTCACTGAATT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTATTCCAACAAGGGCCTaGCCAGTCTCTTTATTAAAC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITIPTRA*PVSLLN
Trigger: GTTTAATAAAGAGACTGGGCAGGCCCTTGTTGGAAT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTCTTTTCTTGGAGGTTTaGTTCCATTTCTTGCCCCAG +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAILFLEV*FHFLPQ
Trigger: CTGGGGCAAGAAATGGAAGCAAACCTCCAAGAAAAG...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGCTTGTTGGAGTATCTaGGCGTCATTAATCCCAGTA +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIACWSI*ASLIPV
Trigger: TACTGGGATTAATGACGCCCAGATACTCCAACAAGC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGAATCTCAACTGCTCTaGACGGATCAACATACTTCC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIESQLL*TDQHTS
Trigger: GGAAGTATGTTGATCCGTCCAGAGCAGTTGAGATTC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTCTTCAGCTTTCATTTaGAAGGCATCTTCCAACCAG +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITSSAFI*KASSNQ
Trigger: CTGGTTGGAAGATGCCTTCCAAATGAAAGCTGAAGA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTACCATAGGGTTCTTTaGCTTCTCTTCATCCGTTTC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITYHRVL*LLFIRF
Trigger: GAAACGGATGAAGAGAAGCCAAAGAACCCTATGGTA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTGCACACAGGTTTACTaGAGGCAAACTCCAATGCAT +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAICTQVY*RQTPMH
Trigger: ATGCATTGGAGTTTGCCTCCAGTAAACCTGTGTGCA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCTGCAAAACTGTCTCTaGCCCTTTATCTTCAAGATC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITLQNCL*PFIFKI
Trigger: GATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCAG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTACGATAATCTGTTTCTaGTGGAGTATCTTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITTIICF*WSIFLG
Trigger: GCCCAAGAAGATACTCCACCAGAAACAGATTATCGT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTCCGTGAGCTTTTCTTaGAGGTTTGCTTCCATTTCT +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITSVSFS*RFASIS
Trigger: AGAAATGGAAGCAAACCTCCAAGAAAAGCTCACGGA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGGTACCAACAAGAAGTaGAAACAGATACCTCAGTTC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIGTNKK*KQIPQF
Trigger: GAACTGAGGTATCTGTTTGCACTTCTTGTTGGTACC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAAATGATTTTCTTTGGTaGCTGGTTCTGGATAAAGTA +
Preference number: 4 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKNDFLW*LVLDKV
Trigger: TACTTTATCCAGAACCAGGCACCAAAGAAAATCATT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTATTCTTCAGACCGACTaGAGCTTTCTCTTGTCTTTT +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITILQTD*SFLLSF
Trigger: AAAAGACAAGAGAAAGCTCCAGTCGGTCTGAAGAAT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTGGTCTTCCCAATGCCTaGTTAAATTCAAATCTTGAC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITGLPNA*LNSNLD
Trigger: GTCAAGATTTGAATTTAACCAGGCATTGGGAAGACC...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTTGTTCGATGGATTCTaGATATGCTTTCCTGCAGAT +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITLFDGF*ICFPAD
Trigger: ATCTGCAGGAAAGCATATCCAGAATCCATCGAACAA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTTAAGCAGTATGCACTaGCATTTCGATAACCACCGA +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAILSSMH*HFDNHR
Trigger: TCGGTGGTTATCGAAATGCCAGTGCATACTGCTTAA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTCCGTGAGCTTTTCTTaGAGGTTTGCTTCCATTTCT +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAISVSFS*RFASIS
Trigger: AGAAATGGAAGCAAACCTCCAAGAAAAGCTCACGGA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTAACTTTGGTGGCTCGTaGAAACCTTTAATCTCTGTA +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITNFGGS*KPLISV
Trigger: TACAGAGATTAAAGGTTTCCACGAGCCACCAAAGTT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
3UTR CAA 72 bp ATATGGTTCCATTATACTAACACAAAAGGGCTATTATaGTATGCATCATCCAATGTCCACCCCATGGCTAAA +
Preference number: 4 (lower is better)
Translates to: IWFHYTNTKGLL*YASSNVHPMAK
Trigger: TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTTAGTATAATGGAACCATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR GCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGCATGCTTTATTTTCTaGTATGCTGGCTTCAAGAAC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIACFIF*YAGFKN
Trigger: GTTCTTGAAGCCAGCATAGCAGAAAATAAAGCATGC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGGTCTTCCCAATGCCTaGTTAAATTCAAATCTTGAC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIGLPNA*LNSNLD
Trigger: GTCAAGATTTGAATTTAACCAGGCATTGGGAAGACC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTAGTTCAATTGTTCGATaGATTCTGGATATGCTTTCC +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITSSIVR*ILDMLS
Trigger: GGAAAGCATATCCAGAATCCATCGAACAATTGAACT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCTCAATGATTTTCTTTaGTGCCTGGTTCTGGATAAA +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITLNDFL*CLVLDK
Trigger: TTTATCCAGAACCAGGCACCAAAGAAAATCATTGAG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTATTTCCAGTTTGGCTTaGGCAACTTTCATTATGTTG +
Preference number: 4 (lower is better)
Translates to: LLYASSNVHPMAKLMYITISSLA*ATFIML
Trigger: CAACATAATGAAAGTTGCCCAAGCCAAACTGGAAAT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTAACTTTGGTGGCTCGTaGAAACCTTTAATCTCTGTA +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAINFGGS*KPLISV
Trigger: TACAGAGATTAAAGGTTTCCACGAGCCACCAAAGTT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTAGTTCAATTGTTCGATaGATTCTGGATATGCTTTCC +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAISSIVR*ILDMLS
Trigger: GGAAAGCATATCCAGAATCCATCGAACAATTGAACT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTCTTCCCATGAAGACTTaGTCACAGCAATATCATTAT +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAILPMKT*SQQYHY
Trigger: ATAATGATATTGCTGTGACCAAGTCTTCATGGGAAG...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CCA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTCTCAATGATTTTCTTTaGTGCCTGGTTCTGGATAAA +
Preference number: 4 (lower is better)
Translates to: SFVIIHWFRIKQGECHAILNDFL*CLVLDK
Trigger: TTTATCCAGAACCAGGCACCAAAGAAAATCATTGAG...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp GATGCGGGTGAGGAGGAGCCGGGCAGATCTGAAGCACAGGGTCCCTaGTGTTCTGTTGTGCTTGGTAAGGACTGTGATGGTAGGGGGCCA +
Preference number: 5 (lower is better)
Translates to: DAGEEEPGRSEAQGP*CSVVLGKDCDGRGP
Trigger: TGGCCCCCTACCATCACAGTCCTTACCAAGCACAACAGAACAGCAGGGACCCTGTGCTTCAGATCTGCCCGGCTCCTCCTCACCCGCATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 90 bp TTGATGGCTGCTCTAGATAGTCTGCGCCTCCTGCTTGTGCTGTGGTaGCCGAAGCCTCTGCTTCCCGCAGTTTCGGCGCAGCTAGCAGCT +
Preference number: 5 (lower is better)
Translates to: LMAALDSLRLLLVLW*PKPLLPAVSAQLAA
Trigger: AGCTGCTAGCTGCGCCGAAACTGCGGGAAGCAGAGGCTTCGGCCACCACAGCACAAGCAGGAGGCGCAGACTATCTAGAGCAGCCATCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 90 bp TTCTTGATGGCTGCTCTAGATAGTCTGCGCCTCCTGCTTGTGCTGTaGTGGCCGAAGCCTCTGCTTCCCGCAGTTTCGGCGCAGCTAGCA +
Preference number: 5 (lower is better)
Translates to: FLMAALDSLRLLLVL*WPKPLLPAVSAQLA
Trigger: TGCTAGCTGCGCCGAAACTGCGGGAAGCAGAGGCTTCGGCCACCACAGCACAAGCAGGAGGCGCAGACTATCTAGAGCAGCCATCAAGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCTGGCTAGAAGGTGGTaGGCTCGTGGTGTTTGCAGG +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVLARRW*ARGVCR
Trigger: CCTGCAAACACCACGAGCCAACCACCTTCTAGCCAG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS TCA 90 bp TTGGTGCCGGATGCATGGGCAAATCTGGAGGTATCCGAGACTGAGTaGAGGGTTTGTGAATCACTGACCTCAAGGGCAGGGCGGCACCTG +
Preference number: 5 (lower is better)
Translates to: LVPDAWANLEVSETE*RVCESLTSRAGRHL
Trigger: CAGGTGCCGCCCTGCCCTTGAGGTCAGTGATTCACAAACCCTTCACTCAGTCTCGGATACCTCCAGATTTGCCCATGCATCCGGCACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp GAAGCCTCTGCTTCCCGCAGTTTCGGCGCAGCTAGCAGCTTTTCTTaGAGTGATCGTTGGGCAAGCTGCGTGTCCCATTCTTCCAGTTCC +
Preference number: 5 (lower is better)
Translates to: EASASRSFGAASSFS*SDRWASCVSHSSSS
Trigger: GGAACTGGAAGAATGGGACACGCAGCTTGCCCAACGATCACTGCAAGAAAAGCTGCTAGCTGCGCCGAAACTGCGGGAAGCAGAGGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGGTCCCTGCTGTTCTGTaGTGCTTGGTAAGGACTGTG +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVVPAVL*CLVRTV
Trigger: CACAGTCCTTACCAAGCACAACAGAACAGCAGGGAC...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGAGATCATGTGACGCCTaGGCAATCACTCGGAGCGTT +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVRSCDA*AITRSV
Trigger: AACGCTCCGAGTGATTGCCAAGGCGTCACATGATCT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCGCCATGATAACGCCTaGCATACTGGGGGTCATCAT +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVRHDNA*HTGGHH
Trigger: ATGATGACCCCCAGTATGCAAGGCGTTATCATGGCG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTGGTGGAGTATCTTCTaGGGCCAACTTAACCAGCCT +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVWWSIF*GQLNQP
Trigger: AGGCTGGTTAAGTTGGCCCAAGAAGATACTCCACCA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 90 bp TCCAGCGATGTAAACAGCTCTCCAGCACGCACAGTTCTTCCTCTGTaGTGTGCCTTGGTGCCGGATGCATGGGCAAATCTGGAGGTATCC +
Preference number: 5 (lower is better)
Translates to: SSDVNSSPARTVLPL*CALVPDAWANLEVS
Trigger: GGATACCTCCAGATTTGCCCATGCATCCGGCACCAAGGCACATCACAGAGGAAGAACTGTGCGTGCTGGAGAGCTGTTTACATCGCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp ACAGCTCTCCAGCACGCACAGTTCTTCCTCTGTGATGTGCCTTGGTaGCGGATGCATGGGCAAATCTGGAGGTATCCGAGACTGAGTGAA +
Preference number: 5 (lower is better)
Translates to: TALQHAQFFLCDVPW*RMHGQIWRYPRLSE
Trigger: TTCACTCAGTCTCGGATACCTCCAGATTTGCCCATGCATCCGGCACCAAGGCACATCACAGAGGAAGAACTGTGCGTGCTGGAGAGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp CGATGTAAACAGCTCTCCAGCACGCACAGTTCTTCCTCTGTGATGTaGCTTGGTGCCGGATGCATGGGCAAATCTGGAGGTATCCGAGAC +
Preference number: 5 (lower is better)
Translates to: RCKQLSSTHSSSSVM*LGAGCMGKSGGIRD
Trigger: GTCTCGGATACCTCCAGATTTGCCCATGCATCCGGCACCAAGGCACATCACAGAGGAAGAACTGTGCGTGCTGGAGAGCTGTTTACATCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp TTCGGCGCAGCTAGCAGCTTTTCTTGCAGTGATCGTTGGGCAAGCTaGGTGTCCCATTCTTCCAGTTCCTTCTCAAAGCGCTGGTTGTCC +
Preference number: 5 (lower is better)
Translates to: FGAASSFSCSDRWAS*VSHSSSSFSKRWLS
Trigger: GGACAACCAGCGCTTTGAGAAGGAACTGGAAGAATGGGACACGCAGCTTGCCCAACGATCACTGCAAGAAAAGCTGCTAGCTGCGCCGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTTCTCAAAGCGCTGGTaGTCCTCCTCAACAAAGTCT +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVFSKRW*SSSTKS
Trigger: AGACTTTGTTGAGGAGGACAACCAGCGCTTTGAGAA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCGTACCCTCCCTCTTTaGCCTCAATCACAAATTTCC +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVRTLPL*PQSQIS
Trigger: GGAAATTTGTGATTGAGGCAAAAGAGGGAGGGTACG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CCA 90 bp AAGTGGGGAATCTCCACCTCTACACCTTGCTGGCTAGAAGGTGGTTaGCTCGTGGTGTTTGCAGGTTTCGACTGCAAAACTGTCTCTGGC +
Preference number: 5 (lower is better)
Translates to: KWGISTSTPCWLEGG*LVVFAGFDCKTVSG
Trigger: GCCAGAGACAGTTTTGCAGTCGAAACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGAGATTCCCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGCTCTTCAGCTTTCATTaGGAAGGCATCTTCCAACCA +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVLFSFH*EGIFQP
Trigger: TGGTTGGAAGATGCCTTCCAAATGAAAGCTGAAGAG...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 90 bp GGCCTGCTCTTCATCGGTTATGCCCGTCTCCCTGAATGCCCTGTTTaGCTCCGCCAAACTCAAGGCAATCGCTCTCTGAAGATCATCTTT +
Preference number: 5 (lower is better)
Translates to: GLLFIGYARLPECPV*LRQTQGNRSLKIIF
Trigger: AAAGATGATCTTCAGAGAGCGATTGCCTTGAGTTTGGCGGAGTCAAACAGGGCATTCAGGGAGACGGGCATAACCGATGAAGAGCAGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTCAACATACTTCCTCTaGGTACCAACAAGAAGTGCA +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVSTYFL*VPTRSA
Trigger: TGCACTTCTTGTTGGTACCAAGAGGAAGTATGTTGA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTTGACAAGTCACTTCTaGATGGCTGCTCTAGATAGT +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVLTSHF*MAALDS
Trigger: ACTATCTAGAGCAGCCATCAAGAAGTGACTTGTCAA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp TGCTGGCTAGAAGGTGGTTGGCTCGTGGTGTTTGCAGGTTTCGACTaGAAAACTGTCTCTGGCCCTTTATCTTCAAGATCATGTGACGCC +
Preference number: 5 (lower is better)
Translates to: CWLEGGWLVVFAGFD*KTVSGPLSSRSCDA
Trigger: GGCGTCACATGATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCAGTCGAAACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS GCA 90 bp CACCTCTACACCTTGCTGGCTAGAAGGTGGTTGGCTCGTGGTGTTTaGAGGTTTCGACTGCAAAACTGTCTCTGGCCCTTTATCTTCAAG +
Preference number: 5 (lower is better)
Translates to: HLYTLLARRWLARGV*RFRLQNCLWPFIFK
Trigger: CTTGAAGATAAAGGGCCAGAGACAGTTTTGCAGTCGAAACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS GCA 90 bp CTGTCATACACACTCCTGGATTTACCTATCGCCATGATAACGCCTTaGATACTGGGGGTCATCATGACCTCGTCATCGTACCCTCCCTCT +
Preference number: 5 (lower is better)
Translates to: LSYTLLDLPIAMITP*ILGVIMTSSSYPPS
Trigger: AGAGGGAGGGTACGATGACGAGGTCATGATGACCCCCAGTATGCAAGGCGTTATCATGGCGATAGGTAAATCCAGGAGTGTGTATGACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CCA 90 bp TGGGCAAGCTGCGTGTCCCATTCTTCCAGTTCCTTCTCAAAGCGCTaGTTGTCCTCCTCAACAAAGTCTCTCAAGTCTGGAGGTAAGGTT +
Preference number: 5 (lower is better)
Translates to: WASCVSHSSSSFSKR*LSSSTKSLKSGGKV
Trigger: AACCTTACCTCCAGACTTGAGAGACTTTGTTGAGGAGGACAACCAGCGCTTTGAGAAGGAACTGGAAGAATGGGACACGCAGCTTGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 90 bp ATCACAAATTTCCCTAAGTGGGGAATCTCCACCTCTACACCTTGCTaGCTAGAAGGTGGTTGGCTCGTGGTGTTTGCAGGTTTCGACTGC +
Preference number: 5 (lower is better)
Translates to: ITNFPKWGISTSTPC*LEGGWLVVFAGFDC
Trigger: GCAGTCGAAACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGAGATTCCCCACTTAGGGAAATTTGTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGTCTGCGCCTCCTGCTaGTGCTGTGGTGGCCGAAGC +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKVCASC*CCGGRS
Trigger: GCTTCGGCCACCACAGCACAAGCAGGAGGCGCAGAC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGTTCACTTCTTCAGGTTaGATCATTTCCAGTTTGGCT +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVFTSSG*IISSLA
Trigger: AGCCAAACTGGAAATGATCAAACCTGAAGAAGTGAA...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp CAGCAAGCAATCCCCGCGGCAGGTAGCCGGGGTGAGAACAGAGTTTCTATGGTGATAATAATTAAGCCATaGTTCACGTCTCCGTCCTCT +
Preference number: 5 (lower is better)
Translates to: QQAIPAAGSRGENRVSMVIIIKP*FTSPSS
Trigger: AGAGGACGGAGACGTGAACAATGGCTTAATTATTAT...CACCATAGAAACTCTGTTCTCACCCCGGCTACCTGCCGCGGGGATTGCTTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp TCAATCACAAATTTCCCTAAGTGGGGAATCTCCACCTCTACACCTTaGTGGCTAGAAGGTGGTTGGCTCGTGGTGTTTGCAGGTTTCGAC +
Preference number: 5 (lower is better)
Translates to: SITNFPKWGISTSTP*WLEGGWLVVFAGFD
Trigger: GTCGAAACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGAGATTCCCCACTTAGGGAAATTTGTGATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CCA 90 bp TCATCTTTGTCATCTCCAGTGAGATCAATTACATTTGCATCTGCCTaGCTTCCCACGCTGATGTACCTGTCGTTGCCTGGAAGCGCTGTC +
Preference number: 5 (lower is better)
Translates to: SSLSSPVRSITFASA*LPTLMYLSLPGSAV
Trigger: GACAGCGCTTCCAGGCAACGACAGGTACATCAGCGTGGGAAGCCAGGCAGATGCAAATGTAATTGATCTCACTGGAGATGACAAAGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 90 bp TGCCGACTGCAAAACTGTCTCTGGCCCTTTATCTTCAAGATCATGTaGCGCCTTGGCAATCACTCGGAGCGTTTCTTCTTTCCAGTGCTT +
Preference number: 5 (lower is better)
Translates to: CRLQNCLWPFIFKIM*RLGNHSERFFFPVL
Trigger: AAGCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCAAGGCGTCACATGATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCAGTCGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023580.8
CDS CCA 90 bp GATAACCACCGAAAGAGTCCCTCACTAGCTCTTCCCATGAAGACTTaGTCACAGCAATATCATTATACTTCATCCACCGGCTCTCCCGGT +
Preference number: 5 (lower is better)
Translates to: DNHRKSPSLALPMKT*SQQYHYTSSTGSPG
Trigger: ACCGGGAGAGCCGGTGGATGAAGTATAATGATATTGCTGTGACCAAGTCTTCATGGGAAGAGCTAGTGAGGGACTCTTTCGGTGGTTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGTCTGCGCCTCCTGCTaGTGCTGTGGTGGCCGAAGC +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIVCASC*CCGGRS
Trigger: GCTTCGGCCACCACAGCACAAGCAGGAGGCGCAGAC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 90 bp TTTCGACTGCAAAACTGTCTCTGGCCCTTTATCTTCAAGATCATGTaGCGCCTTGGCAATCACTCGGAGCGTTTCTTCTTTCCAGTGCTT +
Preference number: 5 (lower is better)
Translates to: FRLQNCLWPFIFKIM*RLGNHSERFFFPVL
Trigger: AAGCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCAAGGCGTCACATGATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCAGTCGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS GCA 90 bp CTTGACAGTTCAAATGTTAATACCGGCGGCAATTCAGTGAACCAATaGTCCTGGCCTGACTTTCCTGAGTTATCGGAGTGTAAGGATTCG +
Preference number: 5 (lower is better)
Translates to: LDSSNVNTGGNSVNQ*SWPDFPELSECKDS
Trigger: CGAATCCTTACACTCCGATAACTCAGGAAAGTCAGGCCAGGAGCATTGGTTCACTGAATTGCCGCCGGTATTAACATTTGAACTGTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 90 bp AGTTCAAATGTTAATACCGGCGGCAATTCAGTGAACCAATGCTCCTaGCCTGACTTTCCTGAGTTATCGGAGTGTAAGGATTCGATCTCC +
Preference number: 5 (lower is better)
Translates to: SSNVNTGGNSVNQCS*PDFPELSECKDSIS
Trigger: GGAGATCGAATCCTTACACTCCGATAACTCAGGAAAGTCAGGCCAGGAGCATTGGTTCACTGAATTGCCGCCGGTATTAACATTTGAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 90 bp TTAGGAACTGTGCCTTGTCGTCTATGTACATTAAGCAGTATGCACTaGCATTTCGATAACCACCGAAAGAGTCCCTCACTAGCTCTTCCC +
Preference number: 5 (lower is better)
Translates to: LGTVPCRLCTLSSMH*HFDNHRKSPSLALP
Trigger: GGGAAGAGCTAGTGAGGGACTCTTTCGGTGGTTATCGAAATGCCAGTGCATACTGCTTAATGTACATAGACGACAAGGCACAGTTCCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 90 bp GCAAAACTGTCTCTGGCCCTTTATCTTCAAGATCATGTGACGCCTTaGCAATCACTCGGAGCGTTTCTTCTTTCCAGTGCTTTGACAAGT +
Preference number: 5 (lower is better)
Translates to: AKLSLALYLQDHVTP*QSLGAFLLSSALTS
Trigger: ACTTGTCAAAGCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCAAGGCGTCACATGATCTTGAAGATAAAGGGCCAGAGACAGTTTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 90 bp CATGGAGGCGGTAAGGGACTTGGATCATGGATTTGTCCGAGTACATaGGTTCAATTGTTCGATGGATTCTGGATATGCTTTCCTGCAGAT +
Preference number: 5 (lower is better)
Translates to: HGGGKGLGSWICPST*VQLFDGFWICFPAD
Trigger: ATCTGCAGGAAAGCATATCCAGAATCCATCGAACAATTGAACTCATGTACTCGGACAAATCCATGATCCAAGTCCCTTACCGCCTCCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp TGCTCTGGACGGATCAACATACTTCCTCTTGGTACCAACAAGAAGTaGAAACAGATACCTCAGTTCCCGCATAAAAGGCAAATTCCGATG +
Preference number: 5 (lower is better)
Translates to: CSGRINILPLGTNKK*KQIPQFPHKRQIPM
Trigger: CATCGGAATTTGCCTTTTATGCGGGAACTGAGGTATCTGTTTGCACTTCTTGTTGGTACCAAGAGGAAGTATGTTGATCCGTCCAGAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp AAGTCTCTCAAGTCTGGAGGTAAGGTTTCCATTCCAACAAGGGCCTaGCCAGTCTCTTTATTAAACTCCTCTTGTATTAGGAACTGTGCC +
Preference number: 5 (lower is better)
Translates to: KSLKSGGKVSIPTRA*PVSLLNSSCIRNCA
Trigger: GGCACAGTTCCTAATACAAGAGGAGTTTAATAAAGAGACTGGGCAGGCCCTTGTTGGAATGGAAACCTTACCTCCAGACTTGAGAGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGTCCCTGCTGTTCTGTaGTGCTTGGTAAGGACTGTG +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKVPAVL*CLVRTV
Trigger: CACAGTCCTTACCAAGCACAACAGAACAGCAGGGAC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAAGATCATGTGACGCCTaGGCAATCACTCGGAGCGTT +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKRSCDA*AITRSV
Trigger: AACGCTCCGAGTGATTGCCAAGGCGTCACATGATCT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 90 bp CTGAATGCCCTGTTTGACTCCGCCAAACTCAAGGCAATCGCTCTCTaGAGATCATCTTTGTCATCTCCAGTGAGATCAATTACATTTGCA +
Preference number: 5 (lower is better)
Translates to: LNALFDSAKLKAIAL*RSSLSSPVRSITFA
Trigger: TGCAAATGTAATTGATCTCACTGGAGATGACAAAGATGATCTTCAGAGAGCGATTGCCTTGAGTTTGGCGGAGTCAAACAGGGCATTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp TGGGCCAACTTAACCAGCCTAGAATACTCTAATTTAATTGCCGACTaGAAAACTGTCTCTGGCCCTTTATCTTCAAGATCATGTGACGCC +
Preference number: 5 (lower is better)
Translates to: WANLTSLEYSNLIAD*KTVSGPLSSRSCDA
Trigger: GGCGTCACATGATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCAGTCGGCAATTAAATTAGAGTATTCTAGGCTGGTTAAGTTGGCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023580.8
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATGGTGGAGTATCTTCTaGGGCCAACTTAACCAGCCT +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKWWSIF*GQLNQP
Trigger: AGGCTGGTTAAGTTGGCCCAAGAAGATACTCCACCA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 90 bp GGGTTCTTTGGCTTCTCTTCATCCGTTTCCTCTTCAGCTTTCATTTaGAAGGCATCTTCCAACCAGTCCAATAACTTGTGTGTAAACTCA +
Preference number: 5 (lower is better)
Translates to: GFFGFSSSVSSSAFI*KASSNQSNNLCVNS
Trigger: TGAGTTTACACACAAGTTATTGGACTGGTTGGAAGATGCCTTCCAAATGAAAGCTGAAGAGGAAACGGATGAAGAGAAGCCAAAGAACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTACTATCCTTCAGGGCTaGTTGGAGTATCTGGGCGTC +
Preference number: 5 (lower is better)
Translates to: LLYASSNVHPMAKLMYITTILQG*LEYLGV
Trigger: GACGCCCAGATACTCCAACAAGCCCTGAAGGATAGT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 90 bp CTGCATGCCACTCCTCATATTCTTCCAAGTTCACTTCTTCAGGTTTaGTCATTTCCAGTTTGGCTTGGGCAACTTTCATTATGTTGTGAC +
Preference number: 5 (lower is better)
Translates to: LHATPHILPSSLLQV*SFPVWLGQLSLCCD
Trigger: GTCACAACATAATGAAAGTTGCCCAAGCCAAACTGGAAATGATCAAACCTGAAGAAGTGAACTTGGAAGAATATGAGGAGTGGCATGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 90 bp GTTTCGAGAATCCCTCCAAACTTCTATAGGTGTTCTCTTCAAGCATaGTTTATTTTCTGCTATGCTGGCTTCAAGAACTCTACTGATGGC +
Preference number: 5 (lower is better)
Translates to: VSRIPPNFYRCSLQA*FIFCYAGFKNSTDG
Trigger: GCCATCAGTAGAGTTCTTGAAGCCAGCATAGCAGAAAATAAAGCATGCTTGAAGAGAACACCTATAGAAGTTTGGAGGGATTCTCGAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 90 bp ACTTGGATCATGGATTTGTCCGAGTACATGAGTTCAATTGTTCGATaGATTCTGGATATGCTTTCCTGCAGATCTCGCGTGTCATTTTCT +
Preference number: 5 (lower is better)
Translates to: TWIMDLSEYMSSIVR*ILDMLSCRSRVSFS
Trigger: AGAAAATGACACGCGAGATCTGCAGGAAAGCATATCCAGAATCCATCGAACAATTGAACTCATGTACTCGGACAAATCCATGATCCAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTATCCTTCAGGGCTTGTaGGAGTATCTGGGCGTCATT +
Preference number: 5 (lower is better)
Translates to: LLYASSNVHPMAKLMYITILQGL*EYLGVI
Trigger: AATGACGCCCAGATACTCCAACAAGCCCTGAAGGAT...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTACTATCCTTCAGGGCTaGTTGGAGTATCTGGGCGTC +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAITILQG*LEYLGV
Trigger: GACGCCCAGATACTCCAACAAGCCCTGAAGGATAGT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTATCCTTCAGGGCTTGTaGGAGTATCTGGGCGTCATT +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIILQGL*EYLGVI
Trigger: AATGACGCCCAGATACTCCAACAAGCCCTGAAGGAT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTGCTGCTGTGAGTCATaGGATTTGAAGGCATCCTTC +
Preference number: 5 (lower is better)
Translates to: LLYASSNVHPMAKLMYITCCCES*DLKASF
Trigger: GAAGGATGCCTTCAAATCCAATGACTCACAGCAGCA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAATTGACAAGTCACTTCTaGATGGCTGCTCTAGATAGT +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKLTSHF*MAALDS
Trigger: ACTATCTAGAGCAGCCATCAAGAAGTGACTTGTCAA...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTTCTTTCCAGTGCTTaGACAAGTCACTTCTTGATG +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKLLSSA*TSHFLM
Trigger: CATCAAGAAGTGACTTGTCAAAGCACTGGAAAGAAG...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTGCTGCTGTGAGTCATaGGATTTGAAGGCATCCTTC +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAICCCES*DLKASF
Trigger: GAAGGATGCCTTCAAATCCAATGACTCACAGCAGCA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAAACCAGTCCAATAACTaGTGTGTAAACTCACTCACA +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKNQSNN*CVNSLT
Trigger: TGTGAGTGAGTTTACACACAAGTTATTGGACTGGTT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCTCTTCAGCTTTCATTaGGAAGGCATCTTCCAACCA +
Preference number: 5 (lower is better)
Translates to: LLYASSNVHPMAKLMYITLFSFH*EGIFQP
Trigger: TGGTTGGAAGATGCCTTCCAAATGAAAGCTGAAGAG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAATTAGGAACTGTGCCTaGTCGTCTATGTACATTAAG +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKIRNCA*SSMYIK
Trigger: CTTAATGTACATAGACGACAAGGCACAGTTCCTAAT...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTTCTCAAAGCGCTGGTaGTCCTCCTCAACAAAGTCT +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIFSKRW*SSSTKS
Trigger: AGACTTTGTTGAGGAGGACAACCAGCGCTTTGAGAA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTAGTAGGAAGGTAACTTaGGTGGCTCGTGGAAACCTT +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAISRKVT*VARGNL
Trigger: AAGGTTTCCACGAGCCACCAAAGTTACCTTCCTACT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTGACTGGAGCTTTCTCTaGTCTTTTTCTGTCATAGGG +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIDWSFL*SFSVIG
Trigger: CCCTATGACAGAAAAAGACAAGAGAAAGCTCCAGTC...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp AACACAAAAGGGCTATTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAAGTAAATCTTGAGCATTaGATGGAGGCTTGTAATTCA +
Preference number: 5 (lower is better)
Translates to: NTKGLLLYASSNVHPMAKVNLEH*MEACNS
Trigger: TGAATTACAAGCCTCCATCAAATGCTCAAGATTTAC...TTTAGCCATGGGGTGGACATTGGATGATGCATACAATAATAGCCCTTTTGTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTCAACATACTTCCTCTaGGTACCAACAAGAAGTGCA +
Preference number: 5 (lower is better)
Translates to: LLYASSNVHPMAKLMYITSTYFL*VPTRSA
Trigger: TGCACTTCTTGTTGGTACCAAGAGGAAGTATGTTGA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTATCCGTGAGCTTTTCTaGGAGGTTTGCTTCCATTTC +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIIRELF*EVCFHF
Trigger: GAAATGGAAGCAAACCTCCAAGAAAAGCTCACGGAT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTTCTTCCCATGAAGACTaGGTCACAGCAATATCATTA +
Preference number: 5 (lower is better)
Translates to: LLYASSNVHPMAKLMYITSSHED*VTAISL
Trigger: TAATGATATTGCTGTGACCAAGTCTTCATGGGAAGA...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTCTTCTTTCCAGTGCTTaGACAAGTCACTTCTTGATG +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAILLSSA*TSHFLM
Trigger: CATCAAGAAGTGACTTGTCAAAGCACTGGAAAGAAG...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTCATTTCCAGTTTGGCTaGGGCAACTTTCATTATGTT +
Preference number: 5 (lower is better)
Translates to: LLYASSNVHPMAKLMYITHFQFG*GNFHYV
Trigger: AACATAATGAAAGTTGCCCAAGCCAAACTGGAAATG...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TTATTGTATGCATCATCCAATGTCCACCCCATGGCTAAACTCATGTATATAACTGTAAATCTTGAGCATTaGATGGAGGCTTGTAATTCA +
Preference number: 5 (lower is better)
Translates to: LLYASSNVHPMAKLMYITVNLEH*MEACNS
Trigger: TGAATTACAAGCCTCCATCAAATGCTCAAGATTTAC...AGTTATATACATGAGTTTAGCCATGGGGTGGACATTGGATGATGCATACAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTAACCAGTCCAATAACTaGTGTGTAAACTCACTCACA +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAINQSNN*CVNSLT
Trigger: TGTGAGTGAGTTTACACACAAGTTATTGGACTGGTT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTCTTCCCATGAAGACTaGGTCACAGCAATATCATTA +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAISSHED*VTAISL
Trigger: TAATGATATTGCTGTGACCAAGTCTTCATGGGAAGA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTTTCACTTCTTCAGGTTaGATCATTTCCAGTTTGGCT +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIFTSSG*IISSLA
Trigger: AGCCAAACTGGAAATGATCAAACCTGAAGAAGTGAA...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS-3UTR CAA 90 bp TCATTTGTAATTATACATTGGTTTCGGATAAAACAAGGTGAGTGCCATGCGATTATAATAATTAAGCCATaGTTCACGTCTCCGTCCTCT +
Preference number: 5 (lower is better)
Translates to: SFVIIHWFRIKQGECHAIIIIKP*FTSPSS
Trigger: AGAGGACGGAGACGTGAACAATGGCTTAATTATTAT...AATCGCATGGCACTCACCTTGTTTTATCCGAAACCAATGTATAATTACAAATGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp GCTCTAGATAGTCTGCGCCTCCTGCTTGTGCTGTGGTaGCCGAAGCCTCTGCTTCCCGCAGTTTCGGCGCAG +
Preference number: 6 (lower is better)
Translates to: ALDSLRLLLVLW*PKPLLPAVSAQ
Trigger: CTGCGCCGAAACTGCGGGAAGCAGAGGCTTCGGCCACCACAGCACAAGCAGGAGGCGCAGACTATCTAGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp GCTGCTCTAGATAGTCTGCGCCTCCTGCTTGTGCTGTaGTGGCCGAAGCCTCTGCTTCCCGCAGTTTCGGCG +
Preference number: 6 (lower is better)
Translates to: AALDSLRLLLVL*WPKPLLPAVSA
Trigger: CGCCGAAACTGCGGGAAGCAGAGGCTTCGGCCACCACAGCACAAGCAGGAGGCGCAGACTATCTAGAGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp TGCCTGGCTTCCCACGCTGATGTACCTGTCGTTGCCTaGAAGCGCTGTCTGGTAATAGCCTGTCTCCTCCTG +
Preference number: 6 (lower is better)
Translates to: CLASHADVPVVA*KRCLVIACLLL
Trigger: CAGGAGGAGACAGGCTATTACCAGACAGCGCTTCCAGGCAACGACAGGTACATCAGCGTGGGAAGCCAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp CGGGCAGATCTGAAGCACAGGGTCCCTGCTGTTCTGTaGTGCTTGGTAAGGACTGTGATGGTAGGGGGCCAC +
Preference number: 6 (lower is better)
Translates to: RADLKHRVPAVL*CLVRTVMVGGH
Trigger: GTGGCCCCCTACCATCACAGTCCTTACCAAGCACAACAGAACAGCAGGGACCCTGTGCTTCAGATCTGCCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp CAGCTCTCCAGCACGCACAGTTCTTCCTCTGTGATGTaGCTTGGTGCCGGATGCATGGGCAAATCTGGAGGT +
Preference number: 6 (lower is better)
Translates to: QLSSTHSSSSVM*LGAGCMGKSGG
Trigger: ACCTCCAGATTTGCCCATGCATCCGGCACCAAGGCACATCACAGAGGAAGAACTGTGCGTGCTGGAGAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp GCTTCCCGCAGTTTCGGCGCAGCTAGCAGCTTTTCTTaGAGTGATCGTTGGGCAAGCTGCGTGTCCCATTCT +
Preference number: 6 (lower is better)
Translates to: ASRSFGAASSFS*SDRWASCVSHS
Trigger: AGAATGGGACACGCAGCTTGCCCAACGATCACTGCAAGAAAAGCTGCTAGCTGCGCCGAAACTGCGGGAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp CTCCAGCACGCACAGTTCTTCCTCTGTGATGTGCCTTaGTGCCGGATGCATGGGCAAATCTGGAGGTATCCG +
Preference number: 6 (lower is better)
Translates to: LQHAQFFLCDVP*CRMHGQIWRYP
Trigger: CGGATACCTCCAGATTTGCCCATGCATCCGGCACCAAGGCACATCACAGAGGAAGAACTGTGCGTGCTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp CAGCACGCACAGTTCTTCCTCTGTGATGTGCCTTGGTaGCGGATGCATGGGCAAATCTGGAGGTATCCGAGA +
Preference number: 6 (lower is better)
Translates to: QHAQFFLCDVPW*RMHGQIWRYPR
Trigger: TCTCGGATACCTCCAGATTTGCCCATGCATCCGGCACCAAGGCACATCACAGAGGAAGAACTGTGCGTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp GGGAATCTCCACCTCTACACCTTGCTGGCTAGAAGGTaGTTGGCTCGTGGTGTTTGCAGGTTTCGACTGCAA +
Preference number: 6 (lower is better)
Translates to: GNLHLYTLLARR*LARGVCRFRLQ
Trigger: TTGCAGTCGAAACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGAGATTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CCA 72 bp TTCCCTAAGTGGGGAATCTCCACCTCTACACCTTGCTaGCTAGAAGGTGGTTGGCTCGTGGTGTTTGCAGGT +
Preference number: 6 (lower is better)
Translates to: FPKWGISTSTPC*LEGGWLVVFAG
Trigger: ACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGAGATTCCCCACTTAGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS TCA 72 bp GATCAATTACATTTGCATCTGCCTGGCTTCCCACGCTaGTGTACCTGTCGTTGCCTGGAAGCGCTGTCTGGT +
Preference number: 6 (lower is better)
Translates to: DQLHLHLPGFPR*CTCRCLEALSG
Trigger: ACCAGACAGCGCTTCCAGGCAACGACAGGTACATCAGCGTGGGAAGCCAGGCAGATGCAAATGTAATTGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 72 bp TTCATCGGTTATGCCCGTCTCCCTGAATGCCCTGTTTaGCTCCGCCAAACTCAAGGCAATCGCTCTCTGAAG +
Preference number: 6 (lower is better)
Translates to: FIGYARLPECPV*LRQTQGNRSLK
Trigger: CTTCAGAGAGCGATTGCCTTGAGTTTGGCGGAGTCAAACAGGGCATTCAGGGAGACGGGCATAACCGATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 72 bp GATGCATGGGCAAATCTGGAGGTATCCGAGACTGAGTaGAGGGTTTGTGAATCACTGACCTCAAGGGCAGGG +
Preference number: 6 (lower is better)
Translates to: DAWANLEVSETE*RVCESLTSRAG
Trigger: CCCTGCCCTTGAGGTCAGTGATTCACAAACCCTTCACTCAGTCTCGGATACCTCCAGATTTGCCCATGCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp GCTAGCAGCTTTTCTTGCAGTGATCGTTGGGCAAGCTaGGTGTCCCATTCTTCCAGTTCCTTCTCAAAGCGC +
Preference number: 6 (lower is better)
Translates to: ASSFSCSDRWAS*VSHSSSSFSKR
Trigger: GCGCTTTGAGAAGGAACTGGAAGAATGGGACACGCAGCTTGCCCAACGATCACTGCAAGAAAAGCTGCTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 90 bp CCTGTCATACACACTCCTGGATTTACCTATCGCCATGATAACGCCTaGCATACTGGGGGTCATCATGACCTCGTCATCGTACCCTCCCTC +
Preference number: 6 (lower is better)
Translates to: PVIHTPGFTYRHDNA*HTGGHHDLVIVPSL
Trigger: GAGGGAGGGTACGATGACGAGGTCATGATGACCCCCAGTATGCAAGGCGTTATCATGGCGATAGGTAAATCCAGGAGTGTGTATGACAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CAA 90 bp GCAAGCTGCGTGTCCCATTCTTCCAGTTCCTTCTCAAAGCGCTGGTaGTCCTCCTCAACAAAGTCTCTCAAGTCTGGAGGTAAGGTTTCC +
Preference number: 6 (lower is better)
Translates to: ASCVSHSSSSFSKRW*SSSTKSLKSGGKVS
Trigger: GGAAACCTTACCTCCAGACTTGAGAGACTTTGTTGAGGAGGACAACCAGCGCTTTGAGAAGGAACTGGAAGAATGGGACACGCAGCTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 90 bp TCACTCGGAGCGTTTCTTCTTTCCAGTGCTTTGACAAGTCACTTCTaGATGGCTGCTCTAGATAGTCTGCGCCTCCTGCTTGTGCTGTGG +
Preference number: 6 (lower is better)
Translates to: SLGAFLLSSALTSHF*MAALDSLRLLLVLW
Trigger: CCACAGCACAAGCAGGAGGCGCAGACTATCTAGAGCAGCCATCAAGAAGTGACTTGTCAAAGCACTGGAAAGAAGAAACGCTCCGAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 90 bp GTGACGCCTTGGCAATCACTCGGAGCGTTTCTTCTTTCCAGTGCTTaGACAAGTCACTTCTTGATGGCTGCTCTAGATAGTCTGCGCCTC +
Preference number: 6 (lower is better)
Translates to: VTPWQSLGAFLLSSA*TSHFLMAALDSLRL
Trigger: GAGGCGCAGACTATCTAGAGCAGCCATCAAGAAGTGACTTGTCAAAGCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCAAGGCGTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp AATTTCCCTAAGTGGGGAATCTCCACCTCTACACCTTaGTGGCTAGAAGGTGGTTGGCTCGTGGTGTTTGCA +
Preference number: 6 (lower is better)
Translates to: NFPKWGISTSTP*WLEGGWLVVFA
Trigger: TGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGAGATTCCCCACTTAGGGAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CCA 72 bp TGTGATGTGCCTTGGTGCCGGATGCATGGGCAAATCTaGAGGTATCCGAGACTGAGTGAAGGGTTTGTGAAT +
Preference number: 6 (lower is better)
Translates to: CDVPWCRMHGQI*RYPRLSEGFVN
Trigger: ATTCACAAACCCTTCACTCAGTCTCGGATACCTCCAGATTTGCCCATGCATCCGGCACCAAGGCACATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp ATCTCCACCTCTACACCTTGCTGGCTAGAAGGTGGTTaGCTCGTGGTGTTTGCAGGTTTCGACTGCAAAACT +
Preference number: 6 (lower is better)
Translates to: ISTSTPCWLEGG*LVVFAGFDCKT
Trigger: AGTTTTGCAGTCGAAACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CAA 72 bp AATCTCCACCTCTACACCTTGCTGGCTAGAAGGTGGTaGGCTCGTGGTGTTTGCAGGTTTCGACTGCAAAAC +
Preference number: 6 (lower is better)
Translates to: NLHLYTLLARRW*ARGVCRFRLQN
Trigger: GTTTTGCAGTCGAAACCTGCAAACACCACGAGCCAACCACCTTCTAGCCAGCAAGGTGTAGAGGTGGAGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS GCA 72 bp ACACTCCTGGATTTACCTATCGCCATGATAACGCCTTaGATACTGGGGGTCATCATGACCTCGTCATCGTAC +
Preference number: 6 (lower is better)
Translates to: TLLDLPIAMITP*ILGVIMTSSSY
Trigger: GTACGATGACGAGGTCATGATGACCCCCAGTATGCAAGGCGTTATCATGGCGATAGGTAAATCCAGGAGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CCA 72 bp TCATCTCCAGTGAGATCAATTACATTTGCATCTGCCTaGCTTCCCACGCTGATGTACCTGTCGTTGCCTGGA +
Preference number: 6 (lower is better)
Translates to: SSPVRSITFASA*LPTLMYLSLPG
Trigger: TCCAGGCAACGACAGGTACATCAGCGTGGGAAGCCAGGCAGATGCAAATGTAATTGATCTCACTGGAGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp TGCGTGTCCCATTCTTCCAGTTCCTTCTCAAAGCGCTaGTTGTCCTCCTCAACAAAGTCTCTCAAGTCTGGA +
Preference number: 6 (lower is better)
Translates to: CVSHSSSSFSKR*LSSSTKSLKSG
Trigger: TCCAGACTTGAGAGACTTTGTTGAGGAGGACAACCAGCGCTTTGAGAAGGAACTGGAAGAATGGGACACGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp GTGTCCCATTCTTCCAGTTCCTTCTCAAAGCGCTGGTaGTCCTCCTCAACAAAGTCTCTCAAGTCTGGAGGT +
Preference number: 6 (lower is better)
Translates to: VSHSSSSFSKRW*SSSTKSLKSGG
Trigger: ACCTCCAGACTTGAGAGACTTTGTTGAGGAGGACAACCAGCGCTTTGAGAAGGAACTGGAAGAATGGGACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp GTCTCTGGCCCTTTATCTTCAAGATCATGTGACGCCTaGGCAATCACTCGGAGCGTTTCTTCTTTCCAGTGC +
Preference number: 6 (lower is better)
Translates to: VSGPLSSRSCDA*AITRSVSSFQC
Trigger: GCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCAAGGCGTCACATGATCTTGAAGATAAAGGGCCAGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp CACACTCCTGGATTTACCTATCGCCATGATAACGCCTaGCATACTGGGGGTCATCATGACCTCGTCATCGTA +
Preference number: 6 (lower is better)
Translates to: HTPGFTYRHDNA*HTGGHHDLVIV
Trigger: TACGATGACGAGGTCATGATGACCCCCAGTATGCAAGGCGTTATCATGGCGATAGGTAAATCCAGGAGTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CAA 90 bp CCAGCAGGTGTTGCCGACATTCTTCAGACCGACTGGAGCTTTCTCTaGTCTTTTTCTGTCATAGGGGTTTCGAGAATCCCTCCAAACTTC +
Preference number: 6 (lower is better)
Translates to: PAGVADILQTDWSFL*SFSVIGVSRIPPNF
Trigger: GAAGTTTGGAGGGATTCTCGAAACCCCTATGACAGAAAAAGACAAGAGAAAGCTCCAGTCGGTCTGAAGAATGTCGGCAACACCTGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 72 bp ATCTGGGCGTCATTAATCCCAGTAATTTCTCTCAGCTaGTTCAAAAATGTCTGCTGGTGCTTCTGCGCCGCG +
Preference number: 6 (lower is better)
Translates to: IWASLIPVISLS*FKNVCWCFCAA
Trigger: CGCGGCGCAGAAGCACCAGCAGACATTTTTGAATCAGCTGAGAGAAATTACTGGGATTAATGACGCCCAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 72 bp CTTTATTTTCTGCTATGCTGGCTTCAAGAACTCTACTaGTGGCCTGCTCTTCATCGGTTATGCCCGTCTCCC +
Preference number: 6 (lower is better)
Translates to: LYFLLCWLQELY*WPALHRLCPSP
Trigger: GGGAGACGGGCATAACCGATGAAGAGCAGGCCATCAGTAGAGTTCTTGAAGCCAGCATAGCAGAAAATAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp GCCTTGGCAATCACTCGGAGCGTTTCTTCTTTCCAGTaGTTTGACAAGTCACTTCTTGATGGCTGCTCTAGA +
Preference number: 6 (lower is better)
Translates to: ALAITRSVSSFQ*FDKSLLDGCSR
Trigger: TCTAGAGCAGCCATCAAGAAGTGACTTGTCAAAGCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCAAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp TCCGTGAGCTTTTCTTGGAGGTTTGCTTCCATTTCTTaGCCCAGGTATGAACACCAGCGATTCCTCATGTCT +
Preference number: 6 (lower is better)
Translates to: SVSFSWRFASIS*PRYEHQRFLMS
Trigger: AGACATGAGGAATCGCTGGTGTTCATACCTGGGGCAAGAAATGGAAGCAAACCTCCAAGAAAAGCTCACGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp GAAGGTGGTTGGCTCGTGGTGTTTGCAGGTTTCGACTaGAAAACTGTCTCTGGCCCTTTATCTTCAAGATCA +
Preference number: 6 (lower is better)
Translates to: EGGWLVVFAGFD*KTVSGPLSSRS
Trigger: TGATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCAGTCGAAACCTGCAAACACCACGAGCCAACCACCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239066.2
CDS CCA 72 bp TCTCTGGCCCTTTATCTTCAAGATCATGTGACGCCTTaGCAATCACTCGGAGCGTTTCTTCTTTCCAGTGCT +
Preference number: 6 (lower is better)
Translates to: SLALYLQDHVTP*QSLGAFLLSSA
Trigger: AGCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCAAGGCGTCACATGATCTTGAAGATAAAGGGCCAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp GCGTTTCTTCTTTCCAGTGCTTTGACAAGTCACTTCTaGATGGCTGCTCTAGATAGTCTGCGCCTCCTGCTT +
Preference number: 6 (lower is better)
Translates to: AFLLSSALTSHF*MAALDSLRLLL
Trigger: AAGCAGGAGGCGCAGACTATCTAGAGCAGCCATCAAGAAGTGACTTGTCAAAGCACTGGAAAGAAGAAACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 90 bp TGCAAAACTGTCTCTGGCCCTTTATCTTCAAGATCATGTGACGCCTaGGCAATCACTCGGAGCGTTTCTTCTTTCCAGTGCTTTGACAAG +
Preference number: 6 (lower is better)
Translates to: CKTVSGPLSSRSCDA*AITRSVSSFQCFDK
Trigger: CTTGTCAAAGCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCAAGGCGTCACATGATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 90 bp AAGGGCAGAAAGGGAACGATAAACTCATTCATAATAATTAAGCCATaGTTCACGTCTCCGTCCTCTCCAGACTCAAACAGCTCGGCCGCT +
Preference number: 6 (lower is better)
Translates to: KGRKGTINSFIIIKP*FTSPSSPDSNSSAA
Trigger: AGCGGCCGAGCTGTTTGAGTCTGGAGAGGACGGAGACGTGAACAATGGCTTAATTATTATGAATGAGTTTATCGTTCCCTTTCTGCCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 72 bp ACTCACTCACATCTTGCTGCTGTGAGTCATTGGATTTaGAGGCATCCTTCAGAATCTCAACTGCTCTGGACG +
Preference number: 6 (lower is better)
Translates to: THSHLAAVSHWI*RHPSESQLLWT
Trigger: CGTCCAGAGCAGTTGAGATTCTGAAGGATGCCTTCAAATCCAATGACTCACAGCAGCAAGATGTGAGTGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp TCAAATGTTAATACCGGCGGCAATTCAGTGAACCAATaGTCCTGGCCTGACTTTCCTGAGTTATCGGAGTGT +
Preference number: 6 (lower is better)
Translates to: SNVNTGGNSVNQ*SWPDFPELSEC
Trigger: ACACTCCGATAACTCAGGAAAGTCAGGCCAGGAGCATTGGTTCACTGAATTGCCGCCGGTATTAACATTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp AAACCAGCAGGTGTTGCCGACATTCTTCAGACCGACTaGAGCTTTCTCTTGTCTTTTTCTGTCATAGGGGTT +
Preference number: 6 (lower is better)
Translates to: KPAGVADILQTD*SFLLSFSVIGV
Trigger: AACCCCTATGACAGAAAAAGACAAGAGAAAGCTCCAGTCGGTCTGAAGAATGTCGGCAACACCTGCTGGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp CGAAAGAGTCCCTCACTAGCTCTTCCCATGAAGACTTaGTCACAGCAATATCATTATACTTCATCCACCGGC +
Preference number: 6 (lower is better)
Translates to: RKSPSLALPMKT*SQQYHYTSSTG
Trigger: GCCGGTGGATGAAGTATAATGATATTGCTGTGACCAAGTCTTCATGGGAAGAGCTAGTGAGGGACTCTTTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp CCGAAAGAGTCCCTCACTAGCTCTTCCCATGAAGACTaGGTCACAGCAATATCATTATACTTCATCCACCGG +
Preference number: 6 (lower is better)
Translates to: PKESLTSSSHED*VTAISLYFIHR
Trigger: CCGGTGGATGAAGTATAATGATATTGCTGTGACCAAGTCTTCATGGGAAGAGCTAGTGAGGGACTCTTTCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 90 bp TCCTTCAGAATCTCAACTGCTCTGGACGGATCAACATACTTCCTCTaGGTACCAACAAGAAGTGCAAACAGATACCTCAGTTCCCGCATA +
Preference number: 6 (lower is better)
Translates to: SFRISTALDGSTYFL*VPTRSANRYLSSRI
Trigger: TATGCGGGAACTGAGGTATCTGTTTGCACTTCTTGTTGGTACCAAGAGGAAGTATGTTGATCCGTCCAGAGCAGTTGAGATTCTGAAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 72 bp CAAAACTGTCTCTGGCCCTTTATCTTCAAGATCATGTaGCGCCTTGGCAATCACTCGGAGCGTTTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: QNCLWPFIFKIM*RLGNHSERFFF
Trigger: AAAGAAGAAACGCTCCGAGTGATTGCCAAGGCGTCACATGATCTTGAAGATAAAGGGCCAGAGACAGTTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp GTCATTGGATTTGAAGGCATCCTTCAGAATCTCAACTaGTCTGGACGGATCAACATACTTCCTCTTGGTACC +
Preference number: 6 (lower is better)
Translates to: VIGFEGILQNLN*SGRINILPLGT
Trigger: GGTACCAAGAGGAAGTATGTTGATCCGTCCAGAGCAGTTGAGATTCTGAAGGATGCCTTCAAATCCAATGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp GTGCCTTGTCGTCTATGTACATTAAGCAGTATGCACTaGCATTTCGATAACCACCGAAAGAGTCCCTCACTA +
Preference number: 6 (lower is better)
Translates to: VPCRLCTLSSMH*HFDNHRKSPSL
Trigger: TAGTGAGGGACTCTTTCGGTGGTTATCGAAATGCCAGTGCATACTGCTTAATGTACATAGACGACAAGGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp AACTCACTCACATCTTGCTGCTGTGAGTCATTGGATTaGAAGGCATCCTTCAGAATCTCAACTGCTCTGGAC +
Preference number: 6 (lower is better)
Translates to: NSLTSCCCESLD*KASFRISTALD
Trigger: GTCCAGAGCAGTTGAGATTCTGAAGGATGCCTTCAAATCCAATGACTCACAGCAGCAAGATGTGAGTGAGTT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp TGGCAATCACTCGGAGCGTTTCTTCTTTCCAGTGCTTaGACAAGTCACTTCTTGATGGCTGCTCTAGATAGT +
Preference number: 6 (lower is better)
Translates to: WQSLGAFLLSSA*TSHFLMAALDS
Trigger: ACTATCTAGAGCAGCCATCAAGAAGTGACTTGTCAAAGCACTGGAAAGAAGAAACGCTCCGAGTGATTGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 72 bp TTGACAGTTCAAATGTTAATACCGGCGGCAATTCAGTaGACCAATGCTCCTGGCCTGACTTTCCTGAGTTAT +
Preference number: 6 (lower is better)
Translates to: LTVQMLIPAAIQ*TNAPGLTFLSY
Trigger: ATAACTCAGGAAAGTCAGGCCAGGAGCATTGGTTCACTGAATTGCCGCCGGTATTAACATTTGAACTGTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp CGGATCAACATACTTCCTCTTGGTACCAACAAGAAGTaGAAACAGATACCTCAGTTCCCGCATAAAAGGCAA +
Preference number: 6 (lower is better)
Translates to: RINILPLGTNKK*KQIPQFPHKRQ
Trigger: TTGCCTTTTATGCGGGAACTGAGGTATCTGTTTGCACTTCTTGTTGGTACCAAGAGGAAGTATGTTGATCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp TCTCAACTGCTCTGGACGGATCAACATACTTCCTCTTaGTACCAACAAGAAGTGCAAACAGATACCTCAGTT +
Preference number: 6 (lower is better)
Translates to: SQLLWTDQHTSS*YQQEVQTDTSV
Trigger: AACTGAGGTATCTGTTTGCACTTCTTGTTGGTACCAAGAGGAAGTATGTTGATCCGTCCAGAGCAGTTGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CCA 72 bp ATGGATTTGTCCGAGTACATGAGTTCAATTGTTCGATaGATTCTGGATATGCTTTCCTGCAGATCTCGCGTG +
Preference number: 6 (lower is better)
Translates to: MDLSEYMSSIVR*ILDMLSCRSRV
Trigger: CACGCGAGATCTGCAGGAAAGCATATCCAGAATCCATCGAACAATTGAACTCATGTACTCGGACAAATCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp AGTTCAATTGTTCGATGGATTCTGGATATGCTTTCCTaGAGATCTCGCGTGTCATTTTCTATTTCCGTCCTC +
Preference number: 6 (lower is better)
Translates to: SSIVRWILDMLS*RSRVSFSISVL
Trigger: GAGGACGGAAATAGAAAATGACACGCGAGATCTGCAGGAAAGCATATCCAGAATCCATCGAACAATTGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS TCA 72 bp GGTAAGGGACTTGGATCATGGATTTGTCCGAGTACATaGGTTCAATTGTTCGATGGATTCTGGATATGCTTT +
Preference number: 6 (lower is better)
Translates to: GKGLGSWICPST*VQLFDGFWICF
Trigger: AAAGCATATCCAGAATCCATCGAACAATTGAACTCATGTACTCGGACAAATCCATGATCCAAGTCCCTTACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 72 bp AAGGGAACGATAAACTCATTCATAATAATTAAGCCATaGTTCACGTCTCCGTCCTCTCCAGACTCAAACAGC +
Preference number: 6 (lower is better)
Translates to: KGTINSFIIIKP*FTSPSSPDSNS
Trigger: GCTGTTTGAGTCTGGAGAGGACGGAGACGTGAACAATGGCTTAATTATTATGAATGAGTTTATCGTTCCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS GCA 72 bp TTAACCAGCCTAGAATACTCTAATTTAATTGCCGACTaGAAAACTGTCTCTGGCCCTTTATCTTCAAGATCA +
Preference number: 6 (lower is better)
Translates to: LTSLEYSNLIAD*KTVSGPLSSRS
Trigger: TGATCTTGAAGATAAAGGGCCAGAGACAGTTTTGCAGTCGGCAATTAAATTAGAGTATTCTAGGCTGGTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023580.8
CDS CAA 72 bp TCTTTATTAAACTCCTCTTGTATTAGGAACTGTGCCTaGTCGTCTATGTACATTAAGCAGTATGCACTGGCA +
Preference number: 6 (lower is better)
Translates to: SLLNSSCIRNCA*SSMYIKQYALA
Trigger: TGCCAGTGCATACTGCTTAATGTACATAGACGACAAGGCACAGTTCCTAATACAAGAGGAGTTTAATAAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2
CDS CAA 90 bp TTCTTCCAAGTTCACTTCTTCAGGTTTGATCATTTCCAGTTTGGCTaGGGCAACTTTCATTATGTTGTGACACCTTTCATCAAAACTCAA +
Preference number: 6 (lower is better)
Translates to: FFQVHFFRFDHFQFG*GNFHYVVTPFIKTQ
Trigger: TTGAGTTTTGATGAAAGGTGTCACAACATAATGAAAGTTGCCCAAGCCAAACTGGAAATGATCAAACCTGAAGAAGTGAACTTGGAAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023580.8
ENSMUST00000239066.2