Pregenerated sensors for USP18 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030107Ensembl transcript IDs: ENSMUST00000032198.11, ENSMUST00000204710.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATTTGCGATCCCATGAACCGATaGTCTCCCACTGGTCCCTGT | + |
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Preference number: 2 (lower is better) Translates to: RLEAPTSLALACCIPHICDPMNR*SPTGPC Trigger: ACAGGGACCAGTGGGAGATCATCGGTTCATGGGATC...GCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR-3UTR CCA 90 bp | ATTAGATTCAGAATTTTGAAGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGCCGATGATCTCCCACTaGTCCCTGTCTCTTACAAGT | + |
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Preference number: 2 (lower is better) Translates to: IRFRILKAGGSNQLGPGMPMISH*SLSLTS Trigger: ACTTGTAAGAGACAGGGACCAGTGGGAGATCATCGG...CATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAAAATTCTGAATCTAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR-3UTR TCA 90 bp | TTGAAGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATAATTATTATTCTCGTTaGAATGCAGCAGACAAGGGT | + |
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Preference number: 2 (lower is better) Translates to: LKAGGSNQLGPGMLYPPHNYYSR*NAADKG Trigger: ACCCTTGTCTGCTGCATTTCAACGAGAATAATAATT...ATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR CAA 90 bp | GGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATTaGCATCACAACATGTGTAGAGAAACAGGAAGAAGAACTATTAGT | + |
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Preference number: 2 (lower is better) Translates to: GGSNQLGPGMLYPPH*HHNMCRETGRRTIS Trigger: ACTAATAGTTCTTCTTCCTGTTTCTCTACACATGTTGTGATGCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR-3UTR TCA 90 bp | TGTGCAATAATGTTTATTAGATTCAGAATTTTGAAGGCTGGAGGCTCCAACCAGCAAGCCTTCCGTGTGTaGGCTTTCAGGAGACAAACT | + |
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Preference number: 2 (lower is better) Translates to: CAIMFIRFRILKAGGSNQQAFRV*AFRRQT Trigger: AGTTTGTCTCCTGAAAGCTCACACACGGAAGGCTTG...CTGGTTGGAGCCTCCAGCCTTCAAAATTCTGAATCTAATAAACATTATTGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR CCA 72 bp | AATTTTGAAGGCTGGAGGCTCCAACCAGCTTGGCCCTaGCATGTTGTATCCCCCACATTTGCATCACAACAT | + |
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Preference number: 3 (lower is better) Translates to: NFEGWRLQPAWP*HVVSPTFASQH Trigger: ATGTTGTGATGCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAAAATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR CCA 72 bp | ATTCAGAATTTTGAAGGCTGGAGGCTCCAACCAGCTTaGCCCTGGCATGTTGTATCCCCCACATTTGCATCA | + |
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Preference number: 3 (lower is better) Translates to: IQNFEGWRLQPA*PWHVVSPTFAS Trigger: TGATGCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAAAATTCTGAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR TCA 72 bp | ACTATTAGTGCTCAGGAGAGAGATCCCATGAACCGATaGTCTCCCACTGGTCCCTGTCTCTTACAAGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: TISAQERDPMNR*SPTGPCLLQVL Trigger: CAGAACTTGTAAGAGACAGGGACCAGTGGGAGATCATCGGTTCATGGGATCTCTCTCCTGAGCACTAATAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR CCA 72 bp | GATCTGCCAAGGTCAGTCTGTAAAGGCTGTGCACAATaGAAAGATAAGCGGGGCTTTGCAACTAGGAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: DLPRSVCKGCAQ*KDKRGFATRKK Trigger: TTTCTTCCTAGTTGCAAAGCCCCGCTTATCTTTCCATTGTGCACAGCCTTTACAGACTGACCTTGGCAGATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204710.2 |
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| 3UTR-3UTR CAA 90 bp | ACAACATGTGTAGAGAAACAGGAAGAAGAACTATTAGTGCTCAGGAGAGAGATCAAATTATTATTCTCGTaGAAATGCAGCAGACAAGGG | + |
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Preference number: 3 (lower is better) Translates to: TTCVEKQEEELLVLRREIKLLFS*KCSRQG Trigger: CCCTTGTCTGCTGCATTTCAACGAGAATAATAATTT...GATCTCTCTCCTGAGCACTAATAGTTCTTCTTCCTGTTTCTCTACACATGTTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR TCA 90 bp | AGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATTTGCTATTTCTGCAGGCACTaGACGAGCTCCGTGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: RLEAPTSLALACCIPHICYFCRH*TSSVGS Trigger: GCTGCCCACGGAGCTCGTTCAGTGCCTGCAGAAATA...GCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR GCA 90 bp | TTGAAGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATGTTTGCTCCTCCTGCTaGTCTCTGCTGTACAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: LKAGGSNQLGPGMLYPPHVCSSC*SLLYSP Trigger: TGGGCTGTACAGCAGAGAGCAGCAGGAGGAGCAAAC...ATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR CCA 90 bp | AGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATTTGCTCTGTGTCCGTGATCTaGTCCTTAGTCAGGTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: RLEAPTSLALACCIPHICSVSVI*SLVRFQ Trigger: CTGGAACCTGACTAAGGACCAGATCACGGACACAGA...GCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR GCA 90 bp | AGAATTTTGAAGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCGCAGTTTGCTCCTCCTaGTGCTCTCTGCTGTACAGC | + |
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Preference number: 4 (lower is better) Translates to: RILKAGGSNQLGPGMLYPAVCSS*CSLLYS Trigger: GCTGTACAGCAGAGAGCAGCAGGAGGAGCAAACTGC...GGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAAAATTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR CCA 90 bp | GATGATCTCCCACTGGTCCCTGTCTCTTACAAGTTCTGTCACCTAAGCACTGCCTCAGCCACAACTGACTaGCAGGGTTTCCTCAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: DDLPLVPVSYKFCHLSTASATTD*QGFLRS Trigger: GCTCCTGAGGAAACCCTGCCAGTCAGTTGTGGCTGA...GGCAGTGCTTAGGTGACAGAACTTGTAAGAGACAGGGACCAGTGGGAGATCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR CAA 72 bp | AAGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTaGTATCCCCCACATTTGCATCACAACATGTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: KAGGSNQLGPGM*YPPHLHHNMCR Trigger: TCTACACATGTTGTGATGCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR TCA 90 bp | GGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATTTGCATTCATCATGAACACTTaGAGCAAGGAGTTAAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: GWRLQPAWPWHVVSPTFAFIMNT*SKELRQ Trigger: TTGCCTTAACTCCTTGCTTCAAGTGTTCATGATGAA...TGCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR TCA 90 bp | TTGAAGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATAGTCCATGTTCATCATaGACACTTGAAGCAAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: LKAGGSNQLGPGMLYPPHSPCSS*TLEARS Trigger: ACTCCTTGCTTCAAGTGTTCATGATGAACATGGACT...ATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR TCA 90 bp | CCCACAGATCTGCCAAGGTCAGTCTGTAAAGGCTGTGCACAATGGAAAGATAAGGGACATCCTTCCAGGTaGCCCAACAAACATGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: PTDLPRSVCKGCAQWKDKGHPSR*PNKHVS Trigger: ACTCACATGTTTGTTGGGTCACCTGGAAGGATGTCC...CTTATCTTTCCATTGTGCACAGCCTTTACAGACTGACCTTGGCAGATCTGTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204710.2 |
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| CDS-3UTR TCA 90 bp | ATTAGATTCAGAATTTTGAAGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGGGGAAATTAACTGAGTaGCAGATCTTTTCCGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: IRFRILKAGGSNQLGPGMGKLTE*QIFSVL Trigger: GAGGACGGAAAAGATCTGTCACTCAGTTAATTTCCC...CATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAAAATTCTGAATCTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR GCA 90 bp | GGGTACAGGAGAGGAGATAAGAGTCTATCCCTCTCTGGAGGTGTGAGTATATCTTCTCTTCCTCTCTTCTaGACTCCGAGGCACTGTTAT | + |
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Preference number: 4 (lower is better) Translates to: GYRRGDKSLSLSGGVSISSLPLF*TPRHCY Trigger: ATAACAGTGCCTCGGAGTGCAGAAGAGAGGAAGAGA...AGATATACTCACACCTCCAGAGAGGGATAGACTCTTATCTCCTCTCCTGTACCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR TCA 90 bp | GGGTACAGGAGAGGAGATAAGAGTCTATCCCTCTCTGGAGGTGTGAGTATATCTGACCCAACAAACATGTaGGTCATTGAAGCAGAACCA | + |
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Preference number: 4 (lower is better) Translates to: GYRRGDKSLSLSGGVSISDPTNM*VIEAEP Trigger: TGGTTCTGCTTCAATGACTCACATGTTTGTTGGGTC...AGATATACTCACACCTCCAGAGAGGGATAGACTCTTATCTCCTCTCCTGTACCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| 3UTR CAA 72 bp | AACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATTaGCATCACAACATGTGTAGAGAAACAGGAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: NQLGPGMLYPPH*HHNMCRETGRR Trigger: TCTTCTTCCTGTTTCTCTACACATGTTGTGATGCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR TCA 90 bp | CCCCCACAGATCTGCCAAGGTCAGTCTGTAAAGGCTGTGCACAATGGAAAGATAAAACATGTGAGTCATTaGAGCAGAACCACTTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: PPQICQGQSVKAVHNGKIKHVSH*SRTTFH Trigger: ATGGAAAGTGGTTCTGCTTCAATGACTCACATGTTT...TATCTTTCCATTGTGCACAGCCTTTACAGACTGACCTTGGCAGATCTGTGGGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204710.2 |
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| CDS-3UTR TCA 90 bp | GTTAGTCTGGGGAGTCATCAGAATGTAAGAAACACTGAAGCCTTAGGGGGTTCAGACCCAACAAACATGTaGGTCATTGAAGCAGAACCA | + |
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Preference number: 4 (lower is better) Translates to: VSLGSHQNVRNTEALGGSDPTNM*VIEAEP Trigger: TGGTTCTGCTTCAATGACTCACATGTTTGTTGGGTC...TGAACCCCCTAAGGCTTCAGTGTTTCTTACATTCTGATGACTCCCCAGACTAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000204710.2 |
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| CDS-3UTR TCA 90 bp | CCTTCCGTGTGTGAGCTTTCAGGAGACAAACTACATCTAAGCCATTGCAATAATGGACATCCTTCCAGGTaGCCCAACAAACATGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: PSVCELSGDKLHLSHCNNGHPSR*PNKHVS Trigger: ACTCACATGTTTGTTGGGTCACCTGGAAGGATGTCC...ATTATTGCAATGGCTTAGATGTAGTTTGTCTCCTGAAAGCTCACACACGGAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR CCA 90 bp | GCATGTTGTATCCCCCACATTTGCATCACAACATGTGTAGAGAAACAGGAAGAAAGCAGCAAAAGCAGCTaGAAGGGGACACTTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ACCIPHICITTCVEKQEESSKSS*KGTLLF Trigger: GAAGAGAAGTGTCCCCTTCCAGCTGCTTTTGCTGCT...TTCTTCCTGTTTCTCTACACATGTTGTGATGCAAATGTGGGGGATACAACATGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR TCA 90 bp | TGTGCAATAATGTTTATTAGATTCAGAATTTTGAAGGCTGGAGGCTCCAACCAGGAGAATCTCATGAGGTaGATGGTCAAGGTTTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: CAIMFIRFRILKAGGSNQENLMR*MVKVWG Trigger: GCCCCAAACCTTGACCATTCACCTCATGAGATTCTC...CTGGTTGGAGCCTCCAGCCTTCAAAATTCTGAATCTAATAAACATTATTGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR TCA 90 bp | AAGACCAAGCCTTCCGTGTGTGAGCTTTCAGGAGACAAACTACATCTAAGCCATAAACATGTGAGTCATTaGAGCAGAACCACTTTCCAT | + |
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Preference number: 4 (lower is better) Translates to: KTKPSVCELSGDKLHLSHKHVSH*SRTTFH Trigger: ATGGAAAGTGGTTCTGCTTCAATGACTCACATGTTT...ATGGCTTAGATGTAGTTTGTCTCCTGAAAGCTCACACACGGAAGGCTTGGTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS GCA 90 bp | CTCTTCCTCTTCATGGTCCTCTCTTCCTCCAGCGCTGAGTACTGCTaGGGCTCAGCCACAACTGACTGGCAGGGTTTCCTCAGGAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LFLFMVLSSSSAEYC*GSATTDWQGFLRSP Trigger: TGGGCTCCTGAGGAAACCCTGCCAGTCAGTTGTGGCTGAGCCGCAGCAGTACTCAGCGCTGGAGGAAGAGAGGACCATGAAGAGGAAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS GCA 90 bp | CTCCTGCTGCTCTCTGCTGTACAGCCCACGCAAATCAGGGACTCCTaGGTCCAGATGGTGAACAGACCCTGCAGCCGCTCTGTCAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: LLLLSAVQPTQIRDS*VQMVNRPCSRSVKS Trigger: AGACTTGACAGAGCGGCTGCAGGGTCTGTTCACCATCTGGACGCAGGAGTCCCTGATTTGCGTGGGCTGTACAGCAGAGAGCAGCAGGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR CAA 90 bp | AGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGTTGTATCCCCCACATTTGCGAGAGTGTGAGCAGTTaGCTCCTCCTGCTGCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: RLEAPTSLALACCIPHICESVSS*LLLLLS Trigger: AGAGAGCAGCAGGAGGAGCAAACTGCTCACACTCTC...GCAAATGTGGGGGATACAACATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS TCA 90 bp | TTTTCAGAGGCTTTGCGTCCTTATCAAAAAGAGGAAGAGAGAGTGTaGGCAGTTTGCTCCTCCTGCTGCTCTCTGCTGTACAGCCCACGC | + |
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Preference number: 5 (lower is better) Translates to: FSEALRPYQKEEERV*AVCSSCCSLLYSPR Trigger: GCGTGGGCTGTACAGCAGAGAGCAGCAGGAGGAGCAAACTGCTCACACTCTCTCTTCCTCTTTTTGATAAGGACGCAAAGCCTCTGAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR CAA 90 bp | ATTAGATTCAGAATTTTGAAGGCTGGAGGCTCCAACCAGCTTGGCCCTGGCATGGTGAATGGTCAAGGTTaGGGGCAGATGAGTCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: IRFRILKAGGSNQLGPGMVNGQG*GQMSQL Trigger: AAGCTGACTCATCTGCCCCAAACCTTGACCATTCAC...CATGCCAGGGCCAAGCTGGTTGGAGCCTCCAGCCTTCAAAATTCTGAATCTAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS GCA 90 bp | CAGCAGCAAAAGCAGCTGGAAGGGGACACTTCTCTTCCTCTCTTCTaGACTCCGAGGCACTGTTATCCTCTTCAATATCATTCTGAAGTC | + |
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Preference number: 5 (lower is better) Translates to: QQQKQLEGDTSLPLF*TPRHCYPLQYHSEV Trigger: GACTTCAGAATGATATTGAAGAGGATAACAGTGCCTCGGAGTGCAGAAGAGAGGAAGAGAAGTGTCCCCTTCCAGCTGCTTTTGCTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR CAA 90 bp | AGAGAAACAGGAAGAAGAACTATTAGTGCTCAGGAGAGAGATCCCATGAACCGAATTTCAGACTGTTCCTaGGTATCACCGAGGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: RETGRRTISAQERDPMNRISDCS*VSPRSS Trigger: GGAAGACCTCGGTGATACCAAGGAACAGTCTGAAAT...TCGGTTCATGGGATCTCTCTCCTGAGCACTAATAGTTCTTCTTCCTGTTTCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS-3UTR CAA 90 bp | CCTTCCGTGTGTGAGCTTTCAGGAGACAAACTACATCTAAGCCATTGCAATAATGGGTTTTCAGAGGCTTaGCGTCCTTATCAAAAAGAG | + |
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Preference number: 5 (lower is better) Translates to: PSVCELSGDKLHLSHCNNGFSEA*RPYQKE Trigger: CTCTTTTTGATAAGGACGCAAAGCCTCTGAAAACCC...ATTATTGCAATGGCTTAGATGTAGTTTGTCTCCTGAAAGCTCACACACGGAAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS CCA 72 bp | AGCGCTGAGTACTGCTGCGGCTCAGCCACAACTGACTaGCAGGGTTTCCTCAGGAGCCCAAACCCCTTGCCC | + |
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Preference number: 6 (lower is better) Translates to: SAEYCCGSATTD*QGFLRSPNPLP Trigger: GGGCAAGGGGTTTGGGCTCCTGAGGAAACCCTGCCAGTCAGTTGTGGCTGAGCCGCAGCAGTACTCAGCGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS GCA 72 bp | CTCTCTGCTGTACAGCCCACGCAAATCAGGGACTCCTaGGTCCAGATGGTGAACAGACCCTGCAGCCGCTCT | + |
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Preference number: 6 (lower is better) Translates to: LSAVQPTQIRDS*VQMVNRPCSRS Trigger: AGAGCGGCTGCAGGGTCTGTTCACCATCTGGACGCAGGAGTCCCTGATTTGCGTGGGCTGTACAGCAGAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS GCA 72 bp | CTCTTCATGGTCCTCTCTTCCTCCAGCGCTGAGTACTaGTGCGGCTCAGCCACAACTGACTGGCAGGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: LFMVLSSSSAEY*CGSATTDWQGF Trigger: GAAACCCTGCCAGTCAGTTGTGGCTGAGCCGCAGCAGTACTCAGCGCTGGAGGAAGAGAGGACCATGAAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS CAA 90 bp | TCCAAGGCGTCTTCTCCCCACAGCTCTCGCAGCACATGTCGGAGCTaGCTAACTCTTTGGGCTGGACGAAACATCTCAAGGCATCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SKASSPHSSRSTCRS*LTLWAGRNISRHPP Trigger: TGGAGGATGCCTTGAGATGTTTCGTCCAGCCCAAAGAGTTAGCAAGCTCCGACATGTGCTGCGAGAGCTGTGGGGAGAAGACGCCTTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS CCA 72 bp | AGCTCTCGCAGCACATGTCGGAGCTTGCTAACTCTTTaGGCTGGACGAAACATCTCAAGGCATCCTCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: SSRSTCRSLLTL*AGRNISRHPPG Trigger: CCCTGGAGGATGCCTTGAGATGTTTCGTCCAGCCCAAAGAGTTAGCAAGCTCCGACATGTGCTGCGAGAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS CAA 72 bp | TCTTCTCCCCACAGCTCTCGCAGCACATGTCGGAGCTaGCTAACTCTTTGGGCTGGACGAAACATCTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: SSPHSSRSTCRS*LTLWAGRNISR Trigger: CCTTGAGATGTTTCGTCCAGCCCAAAGAGTTAGCAAGCTCCGACATGTGCTGCGAGAGCTGTGGGGAGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS CAA 90 bp | CCTCGAGTTCCTGGCAGAGAATCTCATGAGGTGAATGGTCAAGGTTaGGGGCAGATGAGTCAGCTTCAGAACCTGTTTCCAAGGCGTCTT | + |
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Preference number: 6 (lower is better) Translates to: PRVPGRESHEVNGQG*GQMSQLQNLFPRRL Trigger: AAGACGCCTTGGAAACAGGTTCTGAAGCTGACTCATCTGCCCCAAACCTTGACCATTCACCTCATGAGATTCTCTGCCAGGAACTCGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS TCA 72 bp | GCTTTGCGTCCTTATCAAAAAGAGGAAGAGAGAGTGTaGGCAGTTTGCTCCTCCTGCTGCTCTCTGCTGTAC | + |
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Preference number: 6 (lower is better) Translates to: ALRPYQKEEERV*AVCSSCCSLLY Trigger: GTACAGCAGAGAGCAGCAGGAGGAGCAAACTGCTCACACTCTCTCTTCCTCTTTTTGATAAGGACGCAAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS TCA 72 bp | TCTTTTCCGTCCTCGAGTTCCTGGCAGAGAATCTCATaGGGTGAATGGTCAAGGTTTGGGGCAGATGAGTCA | + |
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Preference number: 6 (lower is better) Translates to: SFPSSSSWQRIS*GEWSRFGADES Trigger: TGACTCATCTGCCCCAAACCTTGACCATTCACCTCATGAGATTCTCTGCCAGGAACTCGAGGACGGAAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS CAA 72 bp | CCTGGCAGAGAATCTCATGAGGTGAATGGTCAAGGTTaGGGGCAGATGAGTCAGCTTCAGAACCTGTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: PGRESHEVNGQG*GQMSQLQNLFP Trigger: TGGAAACAGGTTCTGAAGCTGACTCATCTGCCCCAAACCTTGACCATTCACCTCATGAGATTCTCTGCCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS GCA 72 bp | AAGCAGCTGGAAGGGGACACTTCTCTTCCTCTCTTCTaGACTCCGAGGCACTGTTATCCTCTTCAATATCAT | + |
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Preference number: 6 (lower is better) Translates to: KQLEGDTSLPLF*TPRHCYPLQYH Trigger: ATGATATTGAAGAGGATAACAGTGCCTCGGAGTGCAGAAGAGAGGAAGAGAAGTGTCCCCTTCCAGCTGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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| CDS CCA 72 bp | CGGCAAAGAGTTCATAGTGTATTTCAGACTGTTCCTTaGTATCACCGAGGTCTTCCTCGGTTGGCAGAACCT | + |
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Preference number: 6 (lower is better) Translates to: RQRVHSVFQTVP*YHRGLPRLAEP Trigger: AGGTTCTGCCAACCGAGGAAGACCTCGGTGATACCAAGGAACAGTCTGAAATACACTATGAACTCTTTGCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032198.11 |
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