Pregenerated sensors for USP17LE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043073Ensembl transcript IDs: ENSMUST00000053464.9, ENSMUST00000211384.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTCAGCAAAAACAGGCAAGGACCCAGAGGAAATGTGGACCCCACGTaGAGGGTAAGGCATTGTCCCTGCCTGAAACAGAGATCCAAACCT | + |
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Preference number: 1 (lower is better) Translates to: VSKNRQGPRGNVDPT*RVRHCPCLKQRSKP Trigger: AGGTTTGGATCTCTGTTTCAGGCAGGGACAATGCCTTACCCTTCACGTGGGGTCCACATTTCCTCTGGGTCCTTGCCTGTTTTTGCTGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| 3UTR CAA 90 bp | GCAAGGACCCAGAGGAAATGTGGACCCCACGTGAAGGGTAAGGCATaGTCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCAC | + |
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Preference number: 2 (lower is better) Translates to: ARTQRKCGPHVKGKA*SLPETEIQTSCSRH Trigger: GTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGACAATGCCTTACCCTTCACGTGGGGTCCACATTTCCTCTGGGTCCTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| 3UTR-3UTR GCA 90 bp | TCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAACAAGCAGAAGCCTCTaGCCTTGCTTGTTCTTGTTC | + |
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Preference number: 2 (lower is better) Translates to: SLPETEIQTSCSRHLGSTTSRSL*PCLFLF Trigger: GAACAAGAACAAGCAAGGGCAGAGGCTTCTGCTTGT...TGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| 3UTR-3UTR CAA 90 bp | CAGGCACCTTGGGTCAACAGTGTGTCCACAGGAGCCTGTGTGAGTGGGTGGGTGAGCCTCTGCCCTTGCTaGTTCTTGTTCTTCCCCTTC | + |
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Preference number: 3 (lower is better) Translates to: QAPWVNSVSTGACVSGWVSLCPC*FLFFPF Trigger: GAAGGGGAAGAACAAGAACAAGCAAGGGCAGAGGCT...CACCCACCCACTCACACAGGCTCCTGTGGACACACTGTTGACCCAAGGTGCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| 3UTR CCA 72 bp | GTCAACAGTGTGTCCACAGGAGCCTGTGTGAGTGGGTaGGTGAGCACTAGCAAACAAGCAGAAGCCTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: VNSVSTGACVSG*VSTSKQAEASA Trigger: GGCAGAGGCTTCTGCTTGTTTGCTAGTGCTCACCCACCCACTCACACAGGCTCCTGTGGACACACTGTTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| 3UTR TCA 72 bp | AACAGGCAAGGACCCAGAGGAAATGTGGACCCCACGTaGAGGGTAAGGCATTGTCCCTGCCTGAAACAGAGA | + |
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Preference number: 3 (lower is better) Translates to: NRQGPRGNVDPT*RVRHCPCLKQR Trigger: TCTCTGTTTCAGGCAGGGACAATGCCTTACCCTTCACGTGGGGTCCACATTTCCTCTGGGTCCTTGCCTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| 3UTR-3UTR CAA 90 bp | CCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAGCAGAAGCCTCTGCCCTaGCTTGTTCTTGTTCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: PCLKQRSKPLVPGTLGQQQKPLP*LVLVLP Trigger: GGGAAGAACAAGAACAAGCAAGGGCAGAGGCTTCTG...CTGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| 3UTR-3UTR CAA 90 bp | TCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACATGCCCTTGCTTGTTCTaGTTCTTCCCCTTCTTCGAT | + |
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Preference number: 3 (lower is better) Translates to: SLPETEIQTSCSRHLGSTCPCLF*FFPFFD Trigger: ATCGAAGAAGGGGAAGAACAAGAACAAGCAAGGGCA...TGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR TCA 90 bp | TCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAGGGCTCATGAGGCCCTaGGAGGTGAGGAGCCTGTCA | + |
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Preference number: 4 (lower is better) Translates to: SLPETEIQTSCSRHLGSTGLMRP*EVRSLS Trigger: TGACAGGCTCCTCACCTCTCAGGGCCTCATGAGCCC...TGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR TCA 90 bp | AGGAAATGTGGACCCCACGTGAAGGGTAAGGCATTGTCCCTGCCTGAAACAGAGGGGATCGAAGGTATGTaGGGTGCCCTGGCAATGGAG | + |
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Preference number: 4 (lower is better) Translates to: RKCGPHVKGKALSLPETEGIEGM*GALAME Trigger: CTCCATTGCCAGGGCACCTCACATACCTTCGATCCC...CTCTGTTTCAGGCAGGGACAATGCCTTACCCTTCACGTGGGGTCCACATTTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR GCA 90 bp | TCCACAGGAGCCTGTGTGAGTGGGTGGGTGAGCACTAGCAAACAAGCAGAAGCCTCATGGGCATCTTCCTaGTGGTGCTTGTGGAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: STGACVSGWVSTSKQAEASWASS*WCLWKA Trigger: TGCCTTCCACAAGCACCAGCAGGAAGATGCCCATGA...GGCTTCTGCTTGTTTGCTAGTGCTCACCCACCCACTCACACAGGCTCCTGTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR GCA 90 bp | AGGAAATGTGGACCCCACGTGAAGGGTAAGGCATTGTCCCTGCCTGAAACAGAGATCCGTGCCCCAGTTTaGTGTGGATCTGGGCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: RKCGPHVKGKALSLPETEIRAPV*CGSGLV Trigger: CACCAGCCCAGATCCACAGCAAACTGGGGCACGGAT...CTCTGTTTCAGGCAGGGACAATGCCTTACCCTTCACGTGGGGTCCACATTTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | GGAGCCTGTGTGAGTGGGTGGGTGAGCACTAGCAAACAAGCAGAAGCCTCTGCCGTATGTGAGGTGCCCTaGCAATGGAGACACTTGATC | + |
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Preference number: 4 (lower is better) Translates to: GACVSGWVSTSKQAEASAVCEVP*QWRHLI Trigger: GATCAAGTGTCTCCATTGCCAGGGCACCTCACATAC...GGCAGAGGCTTCTGCTTGTTTGCTAGTGCTCACCCACCCACTCACACAGGCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | CAGGCACCTTGGGTCAACAGTGTGTCCACAGGAGCCTGTGTGAGTGGGTGGGTGCAGGGTCTTAGAAGCTaGCATCTTCTGTCTACACCT | + |
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Preference number: 4 (lower is better) Translates to: QAPWVNSVSTGACVSGWVQGLRS*HLLSTP Trigger: AGGTGTAGACAGAAGATGCCAGCTTCTAAGACCCTG...CACCCACCCACTCACACAGGCTCCTGTGGACACACTGTTGACCCAAGGTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | TCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACACCGCATCCTGGTCCTTaGGGACTCTCCCAACTCAGA | + |
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Preference number: 4 (lower is better) Translates to: SLPETEIQTSCSRHLGSTPHPGP*GLSQLR Trigger: TCTGAGTTGGGAGAGTCCCCAAGGACCAGGATGCGG...TGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR GCA 90 bp | AGGAAATGTGGACCCCACGTGAAGGGTAAGGCATTGTCCCTGCCTGAAACAGAGGTATTCCTGAGGTTCTaGCCAGCTCTCTGGTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: RKCGPHVKGKALSLPETEVFLRF*PALWWF Trigger: GAACCACCAGAGAGCTGGGCAGAACCTCAGGAATAC...CTCTGTTTCAGGCAGGGACAATGCCTTACCCTTCACGTGGGGTCCACATTTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | GTGTCCACAGGAGCCTGTGTGAGTGGGTGGGTGAGCACTAGCAAACAAGCAGAATGCTGGATCTGCTTCTaGGAAGGAAAGAGCAACCAC | + |
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Preference number: 4 (lower is better) Translates to: VSTGACVSGWVSTSKQAECWICF*EGKSNH Trigger: GTGGTTGCTCTTTCCTTCCCAGAAGCAGATCCAGCA...TTCTGCTTGTTTGCTAGTGCTCACCCACCCACTCACACAGGCTCCTGTGGACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR TCA 90 bp | ACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAGTGTGTCCACAGCTGAGGGGTGGGATCTaGTTGTCTGTGCACTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: TEIQTSCSRHLGSTVCPQLRGGI*LSVHLK Trigger: CTTCAAGTGCACAGACAATCAGATCCCACCCCTCAG...CTGTGGACACACTGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR TCA 90 bp | GCATTGTCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGCAACTTCAGTATTCCTaGGGTTCTGCCCAGCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: ALSLPETEIQTSCSRHLGQLQYS*GSAQLS Trigger: AGAGAGCTGGGCAGAACCTCAGGAATACTGAAGTTG...CCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGACAATGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR GCA 90 bp | TTGTCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCACGAAGGTATGTGAGGTaGCCTGGCAATGGAGACACT | + |
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Preference number: 4 (lower is better) Translates to: LSLPETEIQTSCSRHLGSRRYVR*PGNGDT Trigger: AGTGTCTCCATTGCCAGGGCACCTCACATACCTTCG...TGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGACAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR GCA 90 bp | GTGTCCACAGGAGCCTGTGTGAGTGGGTGGGTGAGCACTAGCAAACAAGCAGAAGAACCTCATGTACTCTaGCCTCTGGCATGTCAATAC | + |
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Preference number: 4 (lower is better) Translates to: VSTGACVSGWVSTSKQAEEPHVL*PLACQY Trigger: GTATTGACATGCCAGAGGGCAGAGTACATGAGGTTC...TTCTGCTTGTTTGCTAGTGCTCACCCACCCACTCACACAGGCTCCTGTGGACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | CCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAGCCCTCCAGTCTCTTCTaGGAAGGAAAGAGAAACCAC | + |
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Preference number: 4 (lower is better) Translates to: PCLKQRSKPLVPGTLGQQPSSLF*EGKRNH Trigger: GTGGTTTCTCTTTCCTTCCCAGAAGAGACTGGAGGG...CTGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | TCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACATGCCCCAGTTTGCTGTaGATCTGGGCTGGTGAATCA | + |
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Preference number: 4 (lower is better) Translates to: SLPETEIQTSCSRHLGSTCPSLL*IWAGES Trigger: TGATTCACCAGCCCAGATCCACAGCAAACTGGGGCA...TGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR TCA 90 bp | GCATTGTCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGCTAACTTGTTACCCGTaGAGGCTGAGAAGCGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: ALSLPETEIQTSCSRHLGLTCYP*RLRSAL Trigger: TAAAGCGCTTCTCAGCCTTCACGGGTAACAAGTTAG...CCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGACAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | TCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAAGGCTCAGACAGGTATaGCTTCAGGTCAAGGAACTC | + |
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Preference number: 4 (lower is better) Translates to: SLPETEIQTSCSRHLGSTRLRQV*LQVKEL Trigger: GAGTTCCTTGACCTGAAGCCATACCTGTCTGAGCCT...TGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR GCA 90 bp | TCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACACTCCGGCATCATCTGTaGAATGGCATTGCTTCTTAC | + |
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Preference number: 4 (lower is better) Translates to: SLPETEIQTSCSRHLGSTLRHHL*NGIASY Trigger: GTAAGAAGCAATGCCATTGCACAGATGATGCCGGAG...TGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR GCA 90 bp | TTGTCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAGTATTCCCATGTTTCTaGCCAGCTTTCTCGTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: LSLPETEIQTSCSRHLGSVFPCF*PAFSWF Trigger: GAACCACGAGAAAGCTGGGCAGAAACATGGGAATAC...TGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | GCATTGTCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGCTTCAAAGAACTTGCTaGAGTCTTCTAAGGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: ALSLPETEIQTSCSRHLGLQRTC*SLLREQ Trigger: CTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAG...CCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGACAATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | GCATTGTCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGCAAATATGTCATGAATaGGTGACGTATCCTGAGGGG | + |
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Preference number: 4 (lower is better) Translates to: ALSLPETEIQTSCSRHLGQICHE*VTYPEG Trigger: CCCCTCAGGATACGTCACCCATTCATGACATATTTG...CCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGACAATGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | CCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAGAGTTTGCTGTGGATCTaGGCTGGTGAATCACAATTG | + |
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Preference number: 4 (lower is better) Translates to: PCLKQRSKPLVPGTLGQQSLLWI*AGESQL Trigger: CAATTGTGATTCACCAGCCCAGATCCACAGCAAACT...CTGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR GCA 90 bp | GCATTGTCCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGCTGGTGAATCACAATTaGATCAACAGGCAGATCAAG | + |
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Preference number: 4 (lower is better) Translates to: ALSLPETEIQTSCSRHLGLVNHN*INRQIK Trigger: CTTGATCTGCCTGTTGATGCAATTGTGATTCACCAG...CCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGGACAATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CCA 90 bp | AACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAGTGTGTCCACAGCATCATCTGTGCAATaGCATTGCTTCTTACGCTTT | + |
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Preference number: 4 (lower is better) Translates to: NRDPNLLFQAPWVNSVSTASSVQ*HCFLRF Trigger: AAAGCGTAAGAAGCAATGCCATTGCACAGATGATGC...TGTGGACACACTGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CAA 90 bp | CAGGCACCTTGGGTCAACAGTGTGTCCACAGGAGCCTGTGTGAGTGGGTGGGTGCATCCGTGCCCCAGTTaGCTGTGGATCTGGGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: QAPWVNSVSTGACVSGWVHPCPS*LWIWAG Trigger: ACCAGCCCAGATCCACAGCAAACTGGGGCACGGATG...CACCCACCCACTCACACAGGCTCCTGTGGACACACTGTTGACCCAAGGTGCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS TCA 90 bp | AAGGCAGAGGTCAAAATCTGGGAGGGCTTCATGACATCCCCCGAGTaGGAGTGCAGGAGACTCTGGGTCACATGGGCTTCCATAGCACAC | + |
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Preference number: 5 (lower is better) Translates to: KAEVKIWEGFMTSPE*ECRRLWVTWASIAH Trigger: GTGTGCTATGGAAGCCCATGTGACCCAGAGTCTCCTGCACTCTCACTCGGGGGATGTCATGAAGCCCTCCCAGATTTTGACCTCTGCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS TCA 90 bp | TCAGTATTCCTGAGGTTCTGCCCAGCTCTCTGGTGGTTCTGTTCCTaGGGCACGAGTTTGGTATTCCCATGTTTCTGCCCAGCTTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: SVFLRFCPALWWFCS*GTSLVFPCFCPAFS Trigger: CGAGAAAGCTGGGCAGAAACATGGGAATACCAAACTCGTGCCTCAGGAACAGAACCACCAGAGAGCTGGGCAGAACCTCAGGAATACTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS-3UTR CAA 90 bp | TCCACAGGAGCCTGTGTGAGTGGGTGGGTGAGCACTAGCAAACAAGCAGAAGCCACCTCTTCAAAGAACTaGCTGGAGTCTTCTAAGGGA | + |
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Preference number: 5 (lower is better) Translates to: STGACVSGWVSTSKQAEATSSKN*LESSKG Trigger: TCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGT...GGCTTCTGCTTGTTTGCTAGTGCTCACCCACCCACTCACACAGGCTCCTGTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS-3UTR CAA 90 bp | CCCTGCCTGAAACAGAGATCCAAACCTCTTGTTCCAGGCACCTTGGGTCAACAGAGGAGGTTTCTTTCTTaGCTCTCTTCTCCCTGTTTT | + |
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Preference number: 5 (lower is better) Translates to: PCLKQRSKPLVPGTLGQQRRFLS*LSSPCF Trigger: AAAACAGGGAGAAGAGAGCAAAGAAAGAAACCTCCT...CTGTTGACCCAAGGTGCCTGGAACAAGAGGTTTGGATCTCTGTTTCAGGCAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS GCA 90 bp | AGGAACGTGCAAACACCATGTCTCCAAAGACCTCTTCAAAGAACTTaGTGGAGTCTTCTAAGGGAGCAGAAGGAAGATTTTCCCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: RNVQTPCLQRPLQRT*WSLLREQKEDFPLQ Trigger: CTGGAGGGGAAAATCTTCCTTCTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGTTTGCACGTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053464.9 |
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| CDS GCA 90 bp | AGGAAAGAGCAACCACCATGTCTCCAAAGACCTCTTCAAAGAACTTaGTGGAGTCTTCTAAGGGAGCAGAAGGAAGATTTTCCCCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: RKEQPPCLQRPLQRT*WSLLREQKEDFPLQ Trigger: CTGGAGGGGAAAATCTTCCTTCTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGGTTGCTCTTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS CCA 90 bp | AACGTGCAAACACCATGTCTCCAAAGACCTCTTCAAAGAACTTGCTaGAGTCTTCTAAGGGAGCAGAAGGAAGATTTTCCCCTCCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: NVQTPCLQRPLQRTC*SLLREQKEDFPLQS Trigger: AGACTGGAGGGGAAAATCTTCCTTCTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGTTTGCACGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053464.9 |
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| CDS CCA 90 bp | AAAGAGCAACCACCATGTCTCCAAAGACCTCTTCAAAGAACTTGCTaGAGTCTTCTAAGGGAGCAGAAGGAAGATTTTCCCCTCCAGTCT | + |
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Preference number: 5 (lower is better) Translates to: KEQPPCLQRPLQRTC*SLLREQKEDFPLQS Trigger: AGACTGGAGGGGAAAATCTTCCTTCTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGGTTGCTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS CCA 72 bp | CCTGTCACCATTGTGCCAGGGTTGATTCTCTTTGTCTaGAGCATCCGTGCCCCAGTTTGCTGTGGATCTGGG | + |
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Preference number: 6 (lower is better) Translates to: PVTIVPGLILFV*SIRAPVCCGSG Trigger: CCCAGATCCACAGCAAACTGGGGCACGGATGCTCCAGACAAAGAGAATCAACCCTGGCACAATGGTGACAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS CCA 72 bp | TGTCTGGAGCATCCGTGCCCCAGTTTGCTGTGGATCTaGGCTGGTGAATCACAATTGCATCAACAGGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: CLEHPCPSLLWI*AGESQLHQQAD Trigger: ATCTGCCTGTTGATGCAATTGTGATTCACCAGCCCAGATCCACAGCAAACTGGGGCACGGATGCTCCAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS CAA 90 bp | TGTGCCAGGGTTGATTCTCTTTGTCTGGAGCATCCGTGCCCCAGTTaGCTGTGGATCTGGGCTGGTGAATCACAATTGCATCAACAGGCA | + |
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Preference number: 6 (lower is better) Translates to: CARVDSLCLEHPCPS*LWIWAGESQLHQQA Trigger: TGCCTGTTGATGCAATTGTGATTCACCAGCCCAGATCCACAGCAAACTGGGGCACGGATGCTCCAGACAAAGAGAATCAACCCTGGCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS TCA 72 bp | GCATCCGTGCCCCAGTTTGCTGTGGATCTGGGCTGGTaGATCACAATTGCATCAACAGGCAGATCAAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ASVPQFAVDLGW*ITIASTGRSSS Trigger: TGAACTTGATCTGCCTGTTGATGCAATTGTGATTCACCAGCCCAGATCCACAGCAAACTGGGGCACGGATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS CCA 72 bp | TCTGAGACCTCCACCAGCCTCCAAATATGTCATGAATaGGTGACGTATCCTGAGGGGTGGGATCTGATTGTC | + |
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Preference number: 6 (lower is better) Translates to: SETSTSLQICHE*VTYPEGWDLIV Trigger: GACAATCAGATCCCACCCCTCAGGATACGTCACCCATTCATGACATATTTGGAGGCTGGTGGAGGTCTCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS GCA 72 bp | TTGATTCTCTTTGTCTGGAGCATCCGTGCCCCAGTTTaGTGTGGATCTGGGCTGGTGAATCACAATTGCATC | + |
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Preference number: 6 (lower is better) Translates to: LILFVWSIRAPV*CGSGLVNHNCI Trigger: GATGCAATTGTGATTCACCAGCCCAGATCCACAGCAAACTGGGGCACGGATGCTCCAGACAAAGAGAATCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS CCA 72 bp | ATAAGGCAAAGGTCCTCCAGTAGGCTCAGACAGGTATaGCTTCAGGTCAAGGAACTCCGGGTAGCTTACTTT | + |
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Preference number: 6 (lower is better) Translates to: IRQRSSSRLRQV*LQVKELRVAYF Trigger: AAAGTAAGCTACCCGGAGTTCCTTGACCTGAAGCCATACCTGTCTGAGCCTACTGGAGGACCTTTGCCTTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS CAA 72 bp | GTTGATTCTCTTTGTCTGGAGCATCCGTGCCCCAGTTaGCTGTGGATCTGGGCTGGTGAATCACAATTGCAT | + |
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Preference number: 6 (lower is better) Translates to: VDSLCLEHPCPS*LWIWAGESQLH Trigger: ATGCAATTGTGATTCACCAGCCCAGATCCACAGCAAACTGGGGCACGGATGCTCCAGACAAAGAGAATCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS CCA 72 bp | GTATTTAGGGTCAAGAACCTCATGTACTCTGCCCTCTaGCATGTCAATACTGACCTGTTTGAGGTCGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: VFRVKNLMYSAL*HVNTDLFEVGL Trigger: CAGACCGACCTCAAACAGGTCAGTATTGACATGCCAGAGGGCAGAGTACATGAGGTTCTTGACCCTAAATAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS CCA 72 bp | CTTTGGAGCAATATGAACATGCAGGGTCTTAGAAGCTaGCATCTTCTGTCTACACCTACCACAGTAGTAGGC | + |
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Preference number: 6 (lower is better) Translates to: LWSNMNMQGLRS*HLLSTPTTVVG Trigger: GCCTACTACTGTGGTAGGTGTAGACAGAAGATGCCAGCTTCTAAGACCCTGCATGTTCATATTGCTCCAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS CCA 72 bp | CCACCATGTCTCCAAAGACCTCTTCAAAGAACTTGCTaGAGTCTTCTAAGGGAGCAGAAGGAAGATTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: PPCLQRPLQRTC*SLLREQKEDFP Trigger: GGGAAAATCTTCCTTCTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS CCA 72 bp | ACACCATGTCTCCAAAGACCTCTTCAAAGAACTTGCTaGAGTCTTCTAAGGGAGCAGAAGGAAGATTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: TPCLQRPLQRTC*SLLREQKEDFP Trigger: GGGAAAATCTTCCTTCTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053464.9 |
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| CDS CAA 72 bp | CCCAGTTTGCTGTGGATCTGGGCTGGTGAATCACAATaGCATCAACAGGCAGATCAAGTTCAACTTCAGTAT | + |
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Preference number: 6 (lower is better) Translates to: PSLLWIWAGESQ*HQQADQVQLQY Trigger: ATACTGAAGTTGAACTTGATCTGCCTGTTGATGCAATTGTGATTCACCAGCCCAGATCCACAGCAAACTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS GCA 72 bp | CCAGTTTGCTGTGGATCTGGGCTGGTGAATCACAATTaGATCAACAGGCAGATCAAGTTCAACTTCAGTATT | + |
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Preference number: 6 (lower is better) Translates to: PVCCGSGLVNHN*INRQIKFNFSI Trigger: AATACTGAAGTTGAACTTGATCTGCCTGTTGATGCAATTGTGATTCACCAGCCCAGATCCACAGCAAACTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053464.9 ENSMUST00000211384.2 |
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| CDS GCA 72 bp | CAACCACCATGTCTCCAAAGACCTCTTCAAAGAACTTaGTGGAGTCTTCTAAGGGAGCAGAAGGAAGATTTT | + |
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Preference number: 6 (lower is better) Translates to: QPPCLQRPLQRT*WSLLREQKEDF Trigger: AAAATCTTCCTTCTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211384.2 |
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| CDS GCA 72 bp | CAAACACCATGTCTCCAAAGACCTCTTCAAAGAACTTaGTGGAGTCTTCTAAGGGAGCAGAAGGAAGATTTT | + |
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Preference number: 6 (lower is better) Translates to: QTPCLQRPLQRT*WSLLREQKEDF Trigger: AAAATCTTCCTTCTGCTCCCTTAGAAGACTCCAGCAAGTTCTTTGAAGAGGTCTTTGGAGACATGGTGTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053464.9 |
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