Pregenerated sensors for USP17LD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057321Ensembl transcript IDs: ENSMUST00000073394.3
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CTCCAGTGTGGTGATTTAGTCTCTACGCTGCTCAGATCCCATGAGTaGCAGGAGAGGCTATGCAGACCTCCCCTGAAGGTCCAGCTTTCC | + |
|
Preference number: 2 (lower is better) Translates to: LQCGDLVSTLLRSHE*QERLCRPPLKVQLS Trigger: GGAAAGCTGGACCTTCAGGGGAGGTCTGCATAGCCTCTCCTGCAACTCATGGGATCTGAGCAGCGTAGAGACTAAATCACCACACTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| 3UTR-3UTR TCA 90 bp | ATTCAAATGATCATTCTCAGAGAGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAACCCCACGTGAAGGGTaGGGCATTGTCCCTGCCTGG | + |
|
Preference number: 2 (lower is better) Translates to: IQMIILRESVSKNRQGPRTPREG*GIVPAW Trigger: CCAGGCAGGGACAATGCCTCACCCTTCACGTGGGGT...TCTGGGCCCTTGCCTGTTTTTACTGACTGACTCTCTGAGAATGATCATTTGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| 3UTR-3UTR CAA 90 bp | CTCCAGTGTGGTGATTTAGTCTCTACGCTGCTCAGATCCCATGAGTTGCAGGAGAGAGGTCCAAACTTCTaGTTCCAGGCACGTTCGGTC | + |
|
Preference number: 3 (lower is better) Translates to: LQCGDLVSTLLRSHELQERGPNF*FQARSV Trigger: GACCGAACGTGCCTGGAACAAGAAGTTTGGACCTCT...CTCCTGCAACTCATGGGATCTGAGCAGCGTAGAGACTAAATCACCACACTGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR TCA 90 bp | GCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGTGGGTGGGTGAGCGCATTGTGCCAGGGTTaGTTCACCTTGTCTGGAGTA | + |
|
Preference number: 4 (lower is better) Translates to: ARSVGMVSTGACVSGWVSALCQG*FTLSGV Trigger: TACTCCAGACAAGGTGAATCAACCCTGGCACAATGC...GCTCACCCACCCACTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR TCA 90 bp | CTTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGGGGGAACAACAGGTTTaGCTGTACTCCTGGGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: LLVPGTFGRHGVHRSLCEGEQQV*LYSWDS Trigger: GCTGTCCCAGGAGTACAGTCAAACCTGTTGTTCCCC...CTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | GCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGTGGGTGGGTGAGCTCTTCTCCCTGTTTTTaGAGGGCTCTCCCACATCTT | + |
|
Preference number: 4 (lower is better) Translates to: ARSVGMVSTGACVSGWVSSSPCF*RALPHL Trigger: AAGATGTGGGAGAGCCCTCCAAAAACAGGGAGAAGA...GCTCACCCACCCACTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| 3UTR CAA 72 bp | GGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTaGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACA | + |
|
Preference number: 4 (lower is better) Translates to: GIVPAWDRGPNF*FQARSVGMVST Trigger: TGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR GCA 90 bp | TTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGTTCAGGTAGCAGCTGTTaGCTGTGTTCTGAAGCCCGC | + |
|
Preference number: 4 (lower is better) Translates to: FLFQARSVGMVSTGACVSSGSSC*LCSEAR Trigger: GCGGGCTTCAGAACACAGGCAACAGCTGCTACCTGA...ACTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR GCA 90 bp | CTTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGGTGTTCCTGAGGCTCTaGCCAGTTTTCTGGTGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LLVPGTFGRHGVHRSLCEVFLRL*PVFWWF Trigger: GAACCACCAGAAAACTGGGCAGAGCCTCAGGAACAC...CTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR GCA 90 bp | GTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGTGGGTGAGAAGCTTCTGCCCTTaGTTGTTCTTGTTCTTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: VPGTFGRHGVHRSLCEWVRSFCP*LFLFFP Trigger: GGGGAAGAACAAGAACAAGCAAGGGCAGAAGCTTCT...CACCCACTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR GCA 90 bp | GTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGTGGGTGGAACCTCATGTATTCTaGCCTCTGGCATGTCAATAC | + |
|
Preference number: 4 (lower is better) Translates to: VPGTFGRHGVHRSLCEWVEPHVF*PLACQY Trigger: GTATTGACATGCCAGAGGGCAGAATACATGAGGTTC...CACCCACTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| 3UTR CAA 72 bp | CAGAGTATAGGTGGACCCCACGTGAAGGGTGAGGCATaGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: QSIGGPHVKGEA*SLPGTEVQTSC Trigger: ACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTTCACGTGGGGTCCACCTATACTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | TTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGTCAGGGTCTTGGAAGCTaGCATCTTCTGTCTACACCT | + |
|
Preference number: 4 (lower is better) Translates to: FLFQARSVGMVSTGACVSQGLGS*HLLSTP Trigger: AGGTGTAGACAGAAGATGCCAGCTTCCAAGACCCTG...ACTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | CTTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGGAATATGCAGGGTCTTaGAAGCTGGCATCTTCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LLVPGTFGRHGVHRSLCEEYAGS*KLASSV Trigger: GACAGAAGATGCCAGCTTCCAAGACCCTGCATATTC...CTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR TCA 90 bp | AGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAGTATAGGTGGACCCCACGTGAACACCTTCCGTGTTCCTaGGGCTCTGCCCAGTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SQSVKTGKGPEYRWTPREHLPCS*GSAQFS Trigger: AGAAAACTGGGCAGAGCCTCAGGAACACGGAAGGTG...TTCACGTGGGGTCCACCTATACTCTGGGCCCTTGCCTGTTTTTACTGACTGACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR TCA 90 bp | CTCCAGTGTGGTGATTTAGTCTCTACGCTGCTCAGATCCCATGAGTTGCAGGAGCAAGGTCCTGAGAGGTaGGGAGCCTGTCAGCATTGT | + |
|
Preference number: 4 (lower is better) Translates to: LQCGDLVSTLLRSHELQEQGPER*GACQHC Trigger: ACAATGCTGACAGGCTCCTCACCTCTCAGGACCTTG...CTCCTGCAACTCATGGGATCTGAGCAGCGTAGAGACTAAATCACCACACTGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR GCA 90 bp | CTTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGGTATTCTCGTGTTTCTaGCCAGCTTTCTTGTGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LLVPGTFGRHGVHRSLCEVFSCF*PAFLWF Trigger: GAACCACAAGAAAGCTGGGCAGAAACACGAGAATAC...CTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR GCA 90 bp | CTTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGACAAGCAGAAGCTTCTaGCCTTGCTTGTTCTTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LLVPGTFGRHGVHRSLCETSRSF*PCLFLF Trigger: GAACAAGAACAAGCAAGGGCAGAAGCTTCTGCTTGT...CTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | AAGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGGGCTGGATCTGCTTCTaGGAAGGAAAGAGAAACCAC | + |
|
Preference number: 4 (lower is better) Translates to: KGEALSLPGTEVQTSCSRGWICF*EGKRNH Trigger: GTGGTTTCTCTTTCCTTCCCAGAAGCAGATCCAGCC...CCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | AGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGCAGACTCTGGGTTACATaGGCTTCCATAGCACACATC | + |
|
Preference number: 4 (lower is better) Translates to: RVRHCPCLGQRSKLLVPGRLWVT*ASIAHI Trigger: GATGTGTGCTATGGAAGCCCATGTAACCCAGAGTCT...GCCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | AAGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGGAGTGCAGGAGACTCTaGGTTACATGGGCTTCCATA | + |
|
Preference number: 4 (lower is better) Translates to: KGEALSLPGTEVQTSCSRECRRL*VTWASI Trigger: TATGGAAGCCCATGTAACCCAGAGTCTCCTGCACTC...CCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR GCA 90 bp | AAGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGTTGTTCCTGTGTTTCTaGCCCAGTTTCTGGTGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: KGEALSLPGTEVQTSCSRLFLCF*PSFWWF Trigger: GAACCACCAGAAACTGGGGCAGAAACACAGGAACAA...CCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | AGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGCATTCCCAACTCAGACTaGGCTTGTCATTGGCAGTTA | + |
|
Preference number: 4 (lower is better) Translates to: RVRHCPCLGQRSKLLVPGIPNSD*ACHWQL Trigger: TAACTGCCAATGACAAGCCCAGTCTGAGTTGGGAAT...GCCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | TTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGTCAAATATGTCATGAATaGGTGAGCTGTCCTCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: FLFQARSVGMVSTGACVSQICHE*VSCPQR Trigger: CCTCTGAGGACAGCTCACCCATTCATGACATATTTG...ACTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | AGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAGTATAGGTGGACCCCACGTGAATCCTGCTGGTGCTTGTaGAAGGCAGAGGTCAAAATC | + |
|
Preference number: 4 (lower is better) Translates to: SQSVKTGKGPEYRWTPRESCWCL*KAEVKI Trigger: GATTTTGACCTCTGCCTTCCACAAGCACCAGCAGGA...TTCACGTGGGGTCCACCTATACTCTGGGCCCTTGCCTGTTTTTACTGACTGACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | AAGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGATGTATTCTGCCCTCTaGCATGTCAATACTGACCTC | + |
|
Preference number: 4 (lower is better) Translates to: KGEALSLPGTEVQTSCSRMYSAL*HVNTDL Trigger: GAGGTCAGTATTGACATGCCAGAGGGCAGAATACAT...CCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR TCA 90 bp | AAGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGTCCCATGTCCAGCTTTaGCATAAGAGAAGTAATGTC | + |
|
Preference number: 4 (lower is better) Translates to: KGEALSLPGTEVQTSCSRSHVQL*HKRSNV Trigger: GACATTACTTCTCTTATGTCAAAGCTGGACATGGGA...CCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | AGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAGTATAGGTGGACCCCACGTGAACATCTTACAGCCTTCTaGGGAACAACAGGTTTGACT | + |
|
Preference number: 4 (lower is better) Translates to: SQSVKTGKGPEYRWTPREHLTAF*GTTGLT Trigger: AGTCAAACCTGTTGTTCCCCAGAAGGCTGTAAGATG...TTCACGTGGGGTCCACCTATACTCTGGGCCCTTGCCTGTTTTTACTGACTGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR TCA 90 bp | ATTCAAATGATCATTCTCAGAGAGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAGTGTTCACAAGGTCCTaGGAGGTGAGGAGCCTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: IQMIILRESVSKNRQGPRVFTRS*EVRSLS Trigger: TGACAGGCTCCTCACCTCTCAGGACCTTGTGAACAC...TCTGGGCCCTTGCCTGTTTTTACTGACTGACTCTCTGAGAATGATCATTTGAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | TTCCACATTCAAATGATCATTCTCAGAGAGTCAGTCAGTAAAAACAGGCAAGGGCCGCATCCTGGTCCTTaGGGACATTCCCAACTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: FHIQMIILRESVSKNRQGPHPGP*GHSQLR Trigger: TCTGAGTTGGGAATGTCCCCAAGGACCAGGATGCGG...CCCTTGCCTGTTTTTACTGACTGACTCTCTGAGAATGATCATTTGAATGTGGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | ATTCAAATGATCATTCTCAGAGAGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAAGCTGTCCTCAGAGGTaGGTTCTGATTGTCTGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: IQMIILRESVSKNRQGPRSCPQR*VLIVCA Trigger: TGCACAGACAATCAGAACCCACCTCTGAGGACAGCT...TCTGGGCCCTTGCCTGTTTTTACTGACTGACTCTCTGAGAATGATCATTTGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR TCA 90 bp | ATTCAAATGATCATTCTCAGAGAGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAACCTTTGGGGCACTATaGATATGCAGGGTCTTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: IQMIILRESVSKNRQGPRTFGAL*ICRVLE Trigger: TTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGT...TCTGGGCCCTTGCCTGTTTTTACTGACTGACTCTCTGAGAATGATCATTTGAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CCA 90 bp | TTCCACATTCAAATGATCATTCTCAGAGAGTCAGTCAGTAAAAACAGGCAAGGGCCTGAGGCACGAGTTTaGTATTCTCGTGTTTCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: FHIQMIILRESVSKNRQGPEARV*YSRVSA Trigger: GGCAGAAACACGAGAATACCAAACTCGTGCCTCAGG...CCCTTGCCTGTTTTTACTGACTGACTCTCTGAGAATGATCATTTGAATGTGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CAA 90 bp | AAGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGTATCCCTGCCCCAATTaGCTATGGATCTGGGCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: KGEALSLPGTEVQTSCSRYPCPN*LWIWAG Trigger: ACCTGCCCAGATCCATAGCAAATTGGGGCAGGGATA...CCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CAA 90 bp | CTTCTTGTTCCAGGCACGTTCGGTCGGCATGGTGTCCACAGGAGCCTGTGTGAGAGGAGGTTTCTTTGGTaGCTTTCTTCTCCCTGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: LLVPGTFGRHGVHRSLCERRFLW*LSSPCF Trigger: AAAACAGGGAGAAGAAAGCAACCAAAGAAACCTCCT...CTCACACAGGCTCCTGTGGACACCATGCCGACCGAACGTGCCTGGAACAAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CAA 90 bp | AAGGGTGAGGCATTGTCCCTGCCTGGGACAGAGGTCCAAACTTCTTGTTCCAGGCCTAAGGAGGTTTCTTaGGTTGCTTTCTTCTCCCTG | + |
|
Preference number: 5 (lower is better) Translates to: KGEALSLPGTEVQTSCSRPKEVS*VAFFSL Trigger: CAGGGAGAAGAAAGCAACCAAAGAAACCTCCTTAGG...CCTGGAACAAGAAGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS TCA 90 bp | TCCGTGTTCCTGAGGCTCTGCCCAGTTTTCTGGTGGTTCTGTTCCTaGGGCAAGATTTCATTGTTCCTGTGTTTCTGCCCCAGTTTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: SVFLRLCPVFWWFCS*GKISLFLCFCPSFW Trigger: CCAGAAACTGGGGCAGAAACACAGGAACAATGAAATCTTGCCTCAGGAACAGAACCACCAGAAAACTGGGCAGAGCCTCAGGAACACGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS TCA 90 bp | TCACAATTGCATCAGCAGGCAGATCAAGTTCACCTTCCGTGTTCCTaGGGCTCTGCCCAGTTTTCTGGTGGTTCTGTTCCTGAGGCAAGA | + |
|
Preference number: 5 (lower is better) Translates to: SQLHQQADQVHLPCS*GSAQFSGGSVPEAR Trigger: TCTTGCCTCAGGAACAGAACCACCAGAAAACTGGGCAGAGCCTCAGGAACACGGAAGGTGAACTTGATCTGCCTGCTGATGCAATTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS CCA 90 bp | ATAGAGGGCATAAGGCAAAGGTCCTCCAGTAGGCTGGGACAGGTATaGCTTCAGGTCAAGGAACTCCGGGTAGCTTACTTTTCTGTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: IEGIRQRSSSRLGQV*LQVKELRVAYFSVQ Trigger: TTGGACAGAAAAGTAAGCTACCCGGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGACCTTTGCCTTATGCCCTCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CAA 90 bp | CTCCAGTGTGGTGATTTAGTCTCTACGCTGCTCAGATCCCATGAGTTGCAGGAGAGCTTCTGCCCTTGCTaGTTCTTGTTCTTCCCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LQCGDLVSTLLRSHELQESFCPC*FLFFPF Trigger: GAAGGGGAAGAACAAGAACAAGCAAGGGCAGAAGCT...CTCCTGCAACTCATGGGATCTGAGCAGCGTAGAGACTAAATCACCACACTGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS CCA 90 bp | GTTTCTGCCCCAGTTTCTGGTGGTTCTGTTCCTGAGGCACGAGTTTaGTATTCTCGTGTTTCTGCCCAGCTTTCTTGTGGTTCTTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: VSAPVSGGSVPEARV*YSRVSAQLSCGSFP Trigger: AGGAAAAGAACCACAAGAAAGCTGGGCAGAAACACGAGAATACCAAACTCGTGCCTCAGGAACAGAACCACCAGAAACTGGGGCAGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS-3UTR CAA 90 bp | TTCCACATTCAAATGATCATTCTCAGAGAGTCAGTCAGTAAAAACAGGCAAGGGTGCCCTTGCTTGTTCTaGTTCTTCCCCTTCTTCGAT | + |
|
Preference number: 5 (lower is better) Translates to: FHIQMIILRESVSKNRQGCPCLF*FFPFFD Trigger: ATCGAAGAAGGGGAAGAACAAGAACAAGCAAGGGCA...CCCTTGCCTGTTTTTACTGACTGACTCTCTGAGAATGATCATTTGAATGTGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS TCA 72 bp | TACAGAGCTGCCCAGTGTTCACAAGGTCCTGAGAGGTaGGGAGCCTGTCAGCATTGTGCCAGGGTTGATTCA | + |
|
Preference number: 6 (lower is better) Translates to: YRAAQCSQGPER*GACQHCARVDS Trigger: TGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCTTGTGAACACTGGGCAGCTCTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS TCA 72 bp | CATCAGCAGGCAGATCAAGTTCACCTTCCGTGTTCCTaGGGCTCTGCCCAGTTTTCTGGTGGTTCTGTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: HQQADQVHLPCS*GSAQFSGGSVP Trigger: AGGAACAGAACCACCAGAAAACTGGGCAGAGCCTCAGGAACACGGAAGGTGAACTTGATCTGCCTGCTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS TCA 72 bp | CTGTGTTTCTGCCCCAGTTTCTGGTGGTTCTGTTCCTaGGGCACGAGTTTGGTATTCTCGTGTTTCTGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: LCFCPSFWWFCS*GTSLVFSCFCP Trigger: TGGGCAGAAACACGAGAATACCAAACTCGTGCCTCAGGAACAGAACCACCAGAAACTGGGGCAGAAACACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS CCA 72 bp | ATAAGGCAAAGGTCCTCCAGTAGGCTGGGACAGGTATaGCTTCAGGTCAAGGAACTCCGGGTAGCTTACTTT | + |
|
Preference number: 6 (lower is better) Translates to: IRQRSSSRLGQV*LQVKELRVAYF Trigger: AAAGTAAGCTACCCGGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGACCTTTGCCTTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS CCA 72 bp | CCAGTTTCTGGTGGTTCTGTTCCTGAGGCACGAGTTTaGTATTCTCGTGTTTCTGCCCAGCTTTCTTGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: PVSGGSVPEARV*YSRVSAQLSCG Trigger: ACCACAAGAAAGCTGGGCAGAAACACGAGAATACCAAACTCGTGCCTCAGGAACAGAACCACCAGAAACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS TCA 72 bp | CGCTTTAACACTAGCAGGAGTACCTTTGGGGCACTATaGATATGCAGGGTCTTGGAAGCTGGCATCTTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: RFNTSRSTFGAL*ICRVLEAGIFC Trigger: ACAGAAGATGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAGTGTTAAAGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS TCA 72 bp | GTATCCCTGCCCCAATTTGCTATGGATCTGGGCAGGTaGATCACAATTGCATCAGCAGGCAGATCAAGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: VSLPQFAMDLGR*ITIASAGRSSS Trigger: TGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCCCAGATCCATAGCAAATTGGGGCAGGGATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS CAA 72 bp | AAGGAGGTTTCTTTGGTTGCTTTCTTCTCCCTGTTTTaGGAGGGCTCTCCCACATCTTCTGTGCAAGGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: KEVSLVAFFSLF*EGSPTSSVQGL Trigger: AAGCCCTTGCACAGAAGATGTGGGAGAGCCCTCCAAAAACAGGGAGAAGAAAGCAACCAAAGAAACCTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS CAA 72 bp | CCCAATTTGCTATGGATCTGGGCAGGTGAATCACAATaGCATCAGCAGGCAGATCAAGTTCACCTTCCGTGT | + |
|
Preference number: 6 (lower is better) Translates to: PNLLWIWAGESQ*HQQADQVHLPC Trigger: ACACGGAAGGTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCCCAGATCCATAGCAAATTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||
| CDS GCA 72 bp | CCAATTTGCTATGGATCTGGGCAGGTGAATCACAATTaGATCAGCAGGCAGATCAAGTTCACCTTCCGTGTT | + |
|
Preference number: 6 (lower is better) Translates to: PICYGSGQVNHN*ISRQIKFTFRV Trigger: AACACGGAAGGTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCCCAGATCCATAGCAAATTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073394.3 |
||