RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USP17LC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058976

Ensembl transcript IDs: ENSMUST00000079348.4, ENSMUST00000106892.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATaGCCCAGTACATGGGAACTCCAGGGCCAAGAAGTGGGAGTGGGT +
Preference number: 1 (lower is better)
Translates to: GRLWEERPLGIANFI*PSTWELQGQEVGVG
Trigger: ACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR GCA 90 bp AGATGGCCTAGTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTaGAAACTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAAGA +
Preference number: 1 (lower is better)
Translates to: RWPSWPSLGREAPWY*KLYMPQYMGTPGPR
Trigger: TCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAACTAGGCCATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR TCA 90 bp ATTGTTGATCACACACAAAGAATAAGAACATCTATCTCTACAGGGTaGACTACACATTTTCTGGGTAAGAGGTTAGAAAGGGCAGTTGAA +
Preference number: 1 (lower is better)
Translates to: IVDHTQRIRTSISTG*TTHFLGKRLERAVE
Trigger: TTCAACTGCCCTTTCTAACCTCTTACCCAGAAAATGTGTAGTTCACCCTGTAGAGATAGATGTTCTTATTCTTTGTGTGTGATCAACAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR-3UTR CCA 90 bp GTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCCCAGGCACCTTGGGTTaGCAGGGTGTCCACAGGAGC +
Preference number: 2 (lower is better)
Translates to: VGRLWEERPLGIANFICPPGTLG*QGVHRS
Trigger: GCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGG...GGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAAC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR-3UTR CCA 90 bp CTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGTTGTTCCAGGCACCTTaGGTTGGCAGGGTGTCCACA +
Preference number: 2 (lower is better)
Translates to: LYMPQYMGTPGPRSGSGWLFQAP*VGRVST
Trigger: TGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAA...CCACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR CAA 90 bp CTCCAGTGTGGTGATTTAGTCTCTACGCTACTCAGATCCCATGAGTaGCAGGAGAGGCTATGCAGACCTCCCCTGACTGTCCAGCTTTCC +
Preference number: 2 (lower is better)
Translates to: LQCGDLVSTLLRSHE*QERLCRPPLTVQLS
Trigger: GGAAAGCTGGACAGTCAGGGGAGGTCTGCATAGCCTCTCCTGCAACTCATGGGATCTGAGTAGCGTAGAGACTAAATCACCACACTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR-3UTR CCA 90 bp TTGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCGGCATTGTCCCTGCCTaGGACAGAGGTCCAAACCTC +
Preference number: 2 (lower is better)
Translates to: LPERKLQTSRAPVCSLRVGIVPA*DRGPNL
Trigger: GAGGTTTGGACCTCTGTCCCAGGCAGGGACAATGCC...GACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR-3UTR TCA 90 bp GAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCAGTATGCAGACCTCCCCTaGCTGTCCAGCTTTCCTGTC +
Preference number: 2 (lower is better)
Translates to: ERPLGIANFICPSTWELQYADLP*LSSFPV
Trigger: GACAGGAAAGCTGGACAGTCAGGGGAGGTCTGCATA...CTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR-3UTR GCA 90 bp TGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTATTGCAAACTTTATATaGCCCAGTACATGGGAACTC +
Preference number: 2 (lower is better)
Translates to: CLSENSKPQELQCVLLGSIANFI*PSTWEL
Trigger: GAGTTCCCATGTACTGGGGCATATAAAGTTTGCAAT...AGACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR-3UTR CAA 90 bp GGTGATTTAGTCTCTACGCTACTCAGATCCCATGAGTTGCAGGAGAGGCTATGCCTTGTTCCAGGCACCTaGGGTTGGCAGGGTGTCCAC +
Preference number: 3 (lower is better)
Translates to: GDLVSTLLRSHELQERLCLVPGT*GWQGVH
Trigger: GTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAG...GCATAGCCTCTCCTGCAACTCATGGGATCTGAGTAGCGTAGAGACTAAATCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR GCA 72 bp ACGCTACTCAGATCCCATGAGTTGCAGGAGAGGCTATaGAGACCTCCCCTGACTGTCCAGCTTTCCTGTCTT +
Preference number: 3 (lower is better)
Translates to: TLLRSHELQERL*RPPLTVQLSCL
Trigger: AAGACAGGAAAGCTGGACAGTCAGGGGAGGTCTGCATAGCCTCTCCTGCAACTCATGGGATCTGAGTAGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR CCA 72 bp CCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATaGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGG +
Preference number: 3 (lower is better)
Translates to: PLGIANFICPST*ELQGQEVGVGG
Trigger: CCCACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR-3UTR CAA 90 bp TTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAATGAAGGGTGAGGCATaGTCCCTGCCTGGGACAGAG +
Preference number: 3 (lower is better)
Translates to: LAVFGKRGPLVLQTLYAPMKGEA*SLPGTE
Trigger: CTCTGTCCCAGGCAGGGACAATGCCTCACCCTTCAT...TGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR CCA 72 bp TCTCTTAGGGTCTCTAGGTGCATATGTAGCAGAAGATaGCCTAGTTGGCCGTCTTTGGGAAGAGAGGCCCCT +
Preference number: 3 (lower is better)
Translates to: SLRVSRCICSRR*PSWPSLGREAP
Trigger: AGGGGCCTCTCTTCCCAAAGACGGCCAACTAGGCCATCTTCTGCTACATATGCACCTAGAGACCCTAAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR GCA 72 bp TGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATaGCCCAGTACATGGGAACTCCAGGGCCAAGAAGTG +
Preference number: 3 (lower is better)
Translates to: WEERPLGIANFI*PSTWELQGQEV
Trigger: CACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR GCA 72 bp AGTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTaGAAACTTTATATGCCCCAGTACATGGGAACTCCA +
Preference number: 3 (lower is better)
Translates to: SWPSLGREAPWY*KLYMPQYMGTP
Trigger: TGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR GCA 72 bp TCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTCTAGGTaGATATGTAGCAGAAGATGGCCTAGTTGGCCGTCT +
Preference number: 3 (lower is better)
Translates to: SRAPVCSLRVSR*ICSRRWPSWPS
Trigger: AGACGGCCAACTAGGCCATCTTCTGCTACATATGCACCTAGAGACCCTAAGAGAACACACTGGAGCTCTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR TCA 72 bp AGGTTAGAAAGGGCAGTTGAAAAGCCACTTGTTGCCTaGGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTG +
Preference number: 3 (lower is better)
Translates to: RLERAVEKPLVA*AKTPNLKSSSV
Trigger: CACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCAACAAGTGGCTTTTCAACTGCCCTTTCTAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR CCA 72 bp GCATATGTAGCAGAAGATGGCCTAGTTGGCCGTCTTTaGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATA +
Preference number: 3 (lower is better)
Translates to: AYVAEDGLVGRL*EERPLGIANFI
Trigger: TATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAACTAGGCCATCTTCTGCTACATATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR TCA 72 bp CACACACAAAGAATAAGAACATCTATCTCTACAGGGTaGACTACACATTTTCTGGGTAAGAGGTTAGAAAGG +
Preference number: 3 (lower is better)
Translates to: HTQRIRTSISTG*TTHFLGKRLER
Trigger: CCTTTCTAACCTCTTACCCAGAAAATGTGTAGTTCACCCTGTAGAGATAGATGTTCTTATTCTTTGTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR CAA 72 bp CTGGGACAGAGGTCCAAACCTCTTGTTCCAGGCACCTaGGGTTGGCAGGGTGTCCACAGGAGCCTGTGTGAG +
Preference number: 4 (lower is better)
Translates to: LGQRSKPLVPGT*GWQGVHRSLCE
Trigger: CTCACACAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGACCTCTGTCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR CAA 72 bp GGCATTGTCCCTGCCTGGGACAGAGGTCCAAACCTCTaGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACA +
Preference number: 4 (lower is better)
Translates to: GIVPAWDRGPNL*FQAPWVGRVST
Trigger: TGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGACCTCTGTCCCAGGCAGGGACAATGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR CAA 72 bp CAGAGGATAGGTGGACCCCACATGAAGGGTGAGGCATaGTCCCTGCCTGGGACAGAGGTCCAAACCTCTTGT +
Preference number: 4 (lower is better)
Translates to: QRIGGPHMKGEA*SLPGTEVQTSC
Trigger: ACAAGAGGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTTCATGTGGGGTCCACCTATCCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR GCA 90 bp TCCAAACCTCTTGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACAGGAGCCTGTCTTCTCCCTGTTTTTaGAGGGCTCTCCCGCATCTT +
Preference number: 4 (lower is better)
Translates to: SKPLVPGTLGWQGVHRSLSSPCF*RALPHL
Trigger: AAGATGCGGGAGAGCCCTGCAAAAACAGGGAGAAGA...CAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR TCA 90 bp TCCAAACCTCTTGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACAGGAGCCTGTGGTGGTTCTGTTCCTaGGGCAAGATTTCATTGATC +
Preference number: 4 (lower is better)
Translates to: SKPLVPGTLGWQGVHRSLWWFCS*GKISLI
Trigger: GATCAATGAAATCTTGCCTCAGGAACAGAACCACCA...CAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR TCA 90 bp TGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTCAGGGTCCTGAGAGGTaGGGAGCCTGTCAGCATTGT +
Preference number: 4 (lower is better)
Translates to: CLSENSKPQELQCVLLGSQGPER*GACQHC
Trigger: ACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTG...AGACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR CCA 90 bp TCCAAACCTCTTGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACAGGAGCCTGCCTGAGGCACAAGTTTaGTATTCTCATGTTTCTGCC +
Preference number: 4 (lower is better)
Translates to: SKPLVPGTLGWQGVHRSLPEAQV*YSHVSA
Trigger: GGCAGAAACATGAGAATACCAAACTTGTGCCTCAGG...CAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR TCA 90 bp CTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGGTTCTTCCCCTTCTTTaGTCTTCGTCTTCCTTCCTG +
Preference number: 4 (lower is better)
Translates to: LYMPQYMGTPGPRSGSGWVLPLL*SSSSFL
Trigger: CAGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAAC...CCACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR GCA 90 bp TCCAAACCTCTTGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACAGGAGCCTGGGAGGTTTCTTTGGTTaGTCTCTTCTCCCTGTTTTT +
Preference number: 4 (lower is better)
Translates to: SKPLVPGTLGWQGVHRSLGGFFG*SLLPVF
Trigger: AAAAACAGGGAGAAGAGAGCAACCAAAGAAACCTCC...CAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR GCA 90 bp GAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTCTAGGTCCTGTCTACAGAGCTaGCCAGTGTTCACAGGGTCC +
Preference number: 4 (lower is better)
Translates to: ERKLQTSRAPVCSLRVSRSCLQS*PVFTGS
Trigger: GGACCCTGTGAACACTGGGCAGCTCTGTAGACAGGA...CCTAGAGACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR TCA 90 bp CTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGCCCCATGTCTGGCTTTaGCATAAGAGAAGTAATGTC +
Preference number: 4 (lower is better)
Translates to: LYMPQYMGTPGPRSGSGWPHVWL*HKRSNV
Trigger: GACATTACTTCTCTTATGTCAAAGCCAGACATGGGG...CCACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR TCA 90 bp GAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTCTAGGGCATTGTGCCAGGGTTaGTTCTCCTTGTCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: ERKLQTSRAPVCSLRVSRALCQG*FSLSGA
Trigger: TGCTCCAGACAAGGAGAATCAACCCTGGCACAATGC...CCTAGAGACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR TCA 90 bp GTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCGTGGATCTGAGCAGGTaGATCACAATTGCATCAGCA +
Preference number: 4 (lower is better)
Translates to: VGRLWEERPLGIANFICPVDLSR*ITIASA
Trigger: TGCTGATGCAATTGTGATTCACCTGCTCAGATCCAC...GGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR CCA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCATTGATTCTCCTTGTCTaGAGCATCCCTGCCCCAGTT +
Preference number: 4 (lower is better)
Translates to: REAPWYCKLYMPQYMGTPLILLV*SIPAPV
Trigger: AACTGGGGCAGGGATGCTCCAGACAAGGAGAATCAA...TGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR GCA 90 bp AGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAGGATAGGTGGACCCCACATGAAGTATTCTCATGTTTCTaGCCAGCTTTCTTGTGGTTC +
Preference number: 4 (lower is better)
Translates to: SQSVKTGKGPEDRWTPHEVFSCF*PAFLWF
Trigger: GAACCACAAGAAAGCTGGGCAGAAACATGAGAATAC...TTCATGTGGGGTCCACCTATCCTCTGGGCCCTTGCCTGTTTTTACTGACTGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
3UTR CAA 72 bp TGCATATGTAGCAGAAGATGGCCTAGTTGGCCGTCTTaGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTAT +
Preference number: 4 (lower is better)
Translates to: CICSRRWPSWPS*GREAPWYCKLY
Trigger: ATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAACTAGGCCATCTTCTGCTACATATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS TCA 90 bp CTTCCTGTCTACAGAGCTGCCCAGTGTTCACAGGGTCCTGAGAGGTaGGGAGCCTGTCAGCATTGTGCCAGGGTTGATTCTCCTTGTCTG +
Preference number: 5 (lower is better)
Translates to: LPVYRAAQCSQGPER*GACQHCARVDSPCL
Trigger: CAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTGTGAACACTGGGCAGCTCTGTAGACAGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 90 bp ATCCTGGTCCTTGGGGACATTCCCAACTCAGACTGGGCTTGTCATTaGCAGTTAGCTCCACCACTACCTGAGCTTCATCCTGATGCAGCT +
Preference number: 5 (lower is better)
Translates to: ILVLGDIPNSDWACH*QLAPPLPELHPDAA
Trigger: AGCTGCATCAGGATGAAGCTCAGGTAGTGGTGGAGCTAACTGCCAATGACAAGCCCAGTCTGAGTTGGGAATGTCCCCAAGGACCAGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS-3UTR CAA 90 bp GGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAGCCTCTGCCCTTGCTaGTTCTTGTTCTTCCCCTTC +
Preference number: 5 (lower is better)
Translates to: GPLVLQTLYAPVHGNSRASLCPC*FLFFPF
Trigger: GAAGGGGAAGAACAAGAACAAGCAAGGGCAGAGGCT...GGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS TCA 90 bp TCCGTGTTCCTGAGGCTCTGCCCAGCTTTCTGGTGGTTCTGTTCCTaGGGCAAGATTTCATTGATCCTGTGTTTCTGCCCAAGTTTCTGG +
Preference number: 5 (lower is better)
Translates to: SVFLRLCPAFWWFCS*GKISLILCFCPSFW
Trigger: CCAGAAACTTGGGCAGAAACACAGGATCAATGAAATCTTGCCTCAGGAACAGAACCACCAGAAAGCTGGGCAGAGCCTCAGGAACACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS-3UTR CAA 90 bp GGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCAGGGCCCTAGCAGGAGTACCTTaGGGGCACTATGAATATGCA +
Preference number: 5 (lower is better)
Translates to: GPLVLQTLYAPVHGNSRALAGVP*GHYEYA
Trigger: TGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAG...GGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR CAA 90 bp AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCACTCTTCTCCCTGTTTTaGCAGGGCTCTCCCGCATCT +
Preference number: 5 (lower is better)
Translates to: REAPWYCKLYMPQYMGTPLFSLF*QGSPAS
Trigger: AGATGCGGGAGAGCCCTGCAAAAACAGGGAGAAGAG...TGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS TCA 90 bp GCCGAGAAGCGCTTTAACACTAGCAGGAGTACCTTTGGGGCACTATaGATATGCAGGGTCTTGGAAGCTGGCATCTTCTGTCTACACCTA +
Preference number: 5 (lower is better)
Translates to: AEKRFNTSRSTFGAL*ICRVLEAGIFCLHL
Trigger: TAGGTGTAGACAGAAGATGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAGTGTTAAAGCGCTTCTCGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS TCA 90 bp GATTCTCCTTGTCTGGAGCATCCCTGCCCCAGTTTTCTGTGGATCTaGGCAGGTGAATCACAATTGCATCAGCAGGCAGATCAAGTTCAC +
Preference number: 5 (lower is better)
Translates to: DSPCLEHPCPSFLWI*AGESQLHQQADQVH
Trigger: GTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCTCAGATCCACAGAAAACTGGGGCAGGGATGCTCCAGACAAGGAGAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS TCA 90 bp AAGCAGAAGCCTCTGCCCTTGCTTGTTCTTGTTCTTCCCCTTCTTTaGTCTTCGTCTTCCTTCCTGTCTACAGAGCTGCCCAGTGTTCAC +
Preference number: 5 (lower is better)
Translates to: KQKPLPLLVLVLPLL*SSSSFLSTELPSVH
Trigger: GTGAACACTGGGCAGCTCTGTAGACAGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAACAAGAACAAGCAAGGGCAGAGGCTTCTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 90 bp CAGGAGTACCTTTGGGGCACTATGAATATGCAGGGTCTTGGAAGCTaGCATCTTCTGTCTACACCTACCACAGTAGTAGGCATTCTCTCC +
Preference number: 5 (lower is better)
Translates to: QEYLWGTMNMQGLGS*HLLSTPTTVVGILS
Trigger: GGAGAGAATGCCTACTACTGTGGTAGGTGTAGACAGAAGATGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 90 bp ATAGAGGGCATAAGGCAAAGGTCCTCCAGTAGGCTGGGACAGGTATaGCTTCAGGTCAAGGAACTCTGGGTAGCTTACTTTTCTGTCCAA +
Preference number: 5 (lower is better)
Translates to: IEGIRQRSSSRLGQV*LQVKELWVAYFSVQ
Trigger: TTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGACCTTTGCCTTATGCCCTCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS-3UTR CAA 90 bp GGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAGGAGGTTTCTTTGGTaGCTCTCTTCTCCCTGTTTT +
Preference number: 5 (lower is better)
Translates to: GPLVLQTLYAPVHGNSRARRFLW*LSSPCF
Trigger: AAAACAGGGAGAAGAGAGCAACCAAAGAAACCTCCT...GGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR CAA 90 bp GGTGATTTAGTCTCTACGCTACTCAGATCCCATGAGTTGCAGGAGAGGCTATGCCCTAAGGAGGTTTCTTaGGTTGCTCTCTTCTCCCTG +
Preference number: 5 (lower is better)
Translates to: GDLVSTLLRSHELQERLCPKEVS*VALFSL
Trigger: CAGGGAGAAGAGAGCAACCAAAGAAACCTCCTTAGG...GCATAGCCTCTCCTGCAACTCATGGGATCTGAGTAGCGTAGAGACTAAATCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR CAA 90 bp TTGTTGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGAGCATTGTGCCAGGGTaGATTCTCCTTGTCTGGAGC +
Preference number: 5 (lower is better)
Translates to: LLPERKLQTSRAPVCSLRSIVPG*ILLVWS
Trigger: GCTCCAGACAAGGAGAATCAACCCTGGCACAATGCT...CCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR CAA 90 bp TTGTTGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGCAGAAGCCTCTGCCCTaGCTTGTTCTTGTTCTTCCC +
Preference number: 5 (lower is better)
Translates to: LLPERKLQTSRAPVCSLRQKPLP*LVLVLP
Trigger: GGGAAGAACAAGAACAAGCAAGGGCAGAGGCTTCTG...CCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS-3UTR CAA 90 bp GTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCTGTTCTTCCCCTTCTTaGATCTTCGTCTTCCTTCCT +
Preference number: 5 (lower is better)
Translates to: VGRLWEERPLGIANFICPCSSPS*IFVFLP
Trigger: AGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAACA...GGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000106892.2
CDS TCA 90 bp TCATTGATCCTGTGTTTCTGCCCAAGTTTCTGGTGGTTCTGTTCCTaGGGCACAAGTTTGGTATTCTCATGTTTCTGCCCAGCTTTCTTG +
Preference number: 5 (lower is better)
Translates to: SLILCFCPSFWWFCS*GTSLVFSCFCPAFL
Trigger: CAAGAAAGCTGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTGGGCAGAAACACAGGATCAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 90 bp GTTTCTGCCCAAGTTTCTGGTGGTTCTGTTCCTGAGGCACAAGTTTaGTATTCTCATGTTTCTGCCCAGCTTTCTTGTGGTTCTTTTCCT +
Preference number: 5 (lower is better)
Translates to: VSAQVSGGSVPEAQV*YSHVSAQLSCGSFP
Trigger: AGGAAAAGAACCACAAGAAAGCTGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTGGGCAGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS TCA 72 bp TCCTGTCTACAGAGCTGCCCAGTGTTCACAGGGTCCTaGGAGGTGAGGAGCCTGTCAGCATTGTGCCAGGGT +
Preference number: 6 (lower is better)
Translates to: SCLQSCPVFTGS*EVRSLSALCQG
Trigger: ACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTGTGAACACTGGGCAGCTCTGTAGACAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CAA 90 bp CACAGGGTCCTGAGAGGTGAGGAGCCTGTCAGCATTGTGCCAGGGTaGATTCTCCTTGTCTGGAGCATCCCTGCCCCAGTTTTCTGTGGA +
Preference number: 6 (lower is better)
Translates to: HRVLRGEEPVSIVPG*ILLVWSIPAPVFCG
Trigger: TCCACAGAAAACTGGGGCAGGGATGCTCCAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CAA 72 bp CTGAGAGGTGAGGAGCCTGTCAGCATTGTGCCAGGGTaGATTCTCCTTGTCTGGAGCATCCCTGCCCCAGTT +
Preference number: 6 (lower is better)
Translates to: LRGEEPVSIVPG*ILLVWSIPAPV
Trigger: AACTGGGGCAGGGATGCTCCAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS TCA 72 bp TACAGAGCTGCCCAGTGTTCACAGGGTCCTGAGAGGTaGGGAGCCTGTCAGCATTGTGCCAGGGTTGATTCT +
Preference number: 6 (lower is better)
Translates to: YRAAQCSQGPER*GACQHCARVDS
Trigger: AGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTGTGAACACTGGGCAGCTCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 72 bp CGCATCCTGGTCCTTGGGGACATTCCCAACTCAGACTaGGCTTGTCATTGGCAGTTAGCTCCACCACTACCT +
Preference number: 6 (lower is better)
Translates to: RILVLGDIPNSD*ACHWQLAPPLP
Trigger: AGGTAGTGGTGGAGCTAACTGCCAATGACAAGCCCAGTCTGAGTTGGGAATGTCCCCAAGGACCAGGATGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 72 bp CCTGTCAGCATTGTGCCAGGGTTGATTCTCCTTGTCTaGAGCATCCCTGCCCCAGTTTTCTGTGGATCTGAG +
Preference number: 6 (lower is better)
Translates to: PVSIVPGLILLV*SIPAPVFCGSE
Trigger: CTCAGATCCACAGAAAACTGGGGCAGGGATGCTCCAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS TCA 72 bp CTGAGGCTCTGCCCAGCTTTCTGGTGGTTCTGTTCCTaGGGCAAGATTTCATTGATCCTGTGTTTCTGCCCA +
Preference number: 6 (lower is better)
Translates to: LRLCPAFWWFCS*GKISLILCFCP
Trigger: TGGGCAGAAACACAGGATCAATGAAATCTTGCCTCAGGAACAGAACCACCAGAAAGCTGGGCAGAGCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CAA 72 bp AGGCCGAGAAGCGCTTTAACACTAGCAGGAGTACCTTaGGGGCACTATGAATATGCAGGGTCTTGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: RPRSALTLAGVP*GHYEYAGSWKL
Trigger: CAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAGTGTTAAAGCGCTTCTCGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CAA 90 bp CAAGCAGAAGCCTCTGCCCTTGCTTGTTCTTGTTCTTCCCCTTCTTaGATCTTCGTCTTCCTTCCTGTCTACAGAGCTGCCCAGTGTTCA +
Preference number: 6 (lower is better)
Translates to: QAEASALACSCSSPS*IFVFLPVYRAAQCS
Trigger: TGAACACTGGGCAGCTCTGTAGACAGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAACAAGAACAAGCAAGGGCAGAGGCTTCTGCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 72 bp TACATGGGCTTCCATAGCACACATCTTACAGCCTTCTaGGGAACAACAGGTTTGACTGTACTCCTGGGACAG +
Preference number: 6 (lower is better)
Translates to: YMGFHSTHLTAF*GTTGLTVLLGQ
Trigger: CTGTCCCAGGAGTACAGTCAAACCTGTTGTTCCCCAGAAGGCTGTAAGATGTGTGCTATGGAAGCCCATGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 72 bp CTTTGGGGCACTATGAATATGCAGGGTCTTGGAAGCTaGCATCTTCTGTCTACACCTACCACAGTAGTAGGC +
Preference number: 6 (lower is better)
Translates to: LWGTMNMQGLGS*HLLSTPTTVVG
Trigger: GCCTACTACTGTGGTAGGTGTAGACAGAAGATGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 72 bp ATAAGGCAAAGGTCCTCCAGTAGGCTGGGACAGGTATaGCTTCAGGTCAAGGAACTCTGGGTAGCTTACTTT +
Preference number: 6 (lower is better)
Translates to: IRQRSSSRLGQV*LQVKELWVAYF
Trigger: AAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGACCTTTGCCTTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 72 bp AGGCTGGGACAGGTATGGCTTCAGGTCAAGGAACTCTaGGTAGCTTACTTTTCTGTCCAACTTGTTACCCAT +
Preference number: 6 (lower is better)
Translates to: RLGQVWLQVKEL*VAYFSVQLVTH
Trigger: ATGGGTAACAAGTTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS TCA 72 bp CTGTGTTTCTGCCCAAGTTTCTGGTGGTTCTGTTCCTaGGGCACAAGTTTGGTATTCTCATGTTTCTGCCCA +
Preference number: 6 (lower is better)
Translates to: LCFCPSFWWFCS*GTSLVFSCFCP
Trigger: TGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTGGGCAGAAACACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS GCA 72 bp CCAGTTTTCTGTGGATCTGAGCAGGTGAATCACAATTaGATCAGCAGGCAGATCAAGTTCACCTTCCGTGTT +
Preference number: 6 (lower is better)
Translates to: PVFCGSEQVNHN*ISRQIKFTFRV
Trigger: AACACGGAAGGTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCTCAGATCCACAGAAAACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2
CDS CCA 72 bp CAAGTTTCTGGTGGTTCTGTTCCTGAGGCACAAGTTTaGTATTCTCATGTTTCTGCCCAGCTTTCTTGTGGT +
Preference number: 6 (lower is better)
Translates to: QVSGGSVPEAQV*YSHVSAQLSCG
Trigger: ACCACAAGAAAGCTGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000079348.4
ENSMUST00000106892.2