Pregenerated sensors for USP17LC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058976Ensembl transcript IDs: ENSMUST00000079348.4, ENSMUST00000106892.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | GGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATaGCCCAGTACATGGGAACTCCAGGGCCAAGAAGTGGGAGTGGGT | + |
Preference number: 1 (lower is better) Translates to: GRLWEERPLGIANFI*PSTWELQGQEVGVG Trigger: ACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR GCA 90 bp | AGATGGCCTAGTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTaGAAACTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAAGA | + |
Preference number: 1 (lower is better) Translates to: RWPSWPSLGREAPWY*KLYMPQYMGTPGPR Trigger: TCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAACTAGGCCATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR TCA 90 bp | ATTGTTGATCACACACAAAGAATAAGAACATCTATCTCTACAGGGTaGACTACACATTTTCTGGGTAAGAGGTTAGAAAGGGCAGTTGAA | + |
Preference number: 1 (lower is better) Translates to: IVDHTQRIRTSISTG*TTHFLGKRLERAVE Trigger: TTCAACTGCCCTTTCTAACCTCTTACCCAGAAAATGTGTAGTTCACCCTGTAGAGATAGATGTTCTTATTCTTTGTGTGTGATCAACAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR-3UTR CCA 90 bp | GTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCCCAGGCACCTTGGGTTaGCAGGGTGTCCACAGGAGC | + |
Preference number: 2 (lower is better) Translates to: VGRLWEERPLGIANFICPPGTLG*QGVHRS Trigger: GCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGG...GGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAAC 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR-3UTR CCA 90 bp | CTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGTTGTTCCAGGCACCTTaGGTTGGCAGGGTGTCCACA | + |
Preference number: 2 (lower is better) Translates to: LYMPQYMGTPGPRSGSGWLFQAP*VGRVST Trigger: TGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAA...CCACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR CAA 90 bp | CTCCAGTGTGGTGATTTAGTCTCTACGCTACTCAGATCCCATGAGTaGCAGGAGAGGCTATGCAGACCTCCCCTGACTGTCCAGCTTTCC | + |
Preference number: 2 (lower is better) Translates to: LQCGDLVSTLLRSHE*QERLCRPPLTVQLS Trigger: GGAAAGCTGGACAGTCAGGGGAGGTCTGCATAGCCTCTCCTGCAACTCATGGGATCTGAGTAGCGTAGAGACTAAATCACCACACTGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR-3UTR CCA 90 bp | TTGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCGGCATTGTCCCTGCCTaGGACAGAGGTCCAAACCTC | + |
Preference number: 2 (lower is better) Translates to: LPERKLQTSRAPVCSLRVGIVPA*DRGPNL Trigger: GAGGTTTGGACCTCTGTCCCAGGCAGGGACAATGCC...GACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR-3UTR TCA 90 bp | GAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCAGTATGCAGACCTCCCCTaGCTGTCCAGCTTTCCTGTC | + |
Preference number: 2 (lower is better) Translates to: ERPLGIANFICPSTWELQYADLP*LSSFPV Trigger: GACAGGAAAGCTGGACAGTCAGGGGAGGTCTGCATA...CTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR-3UTR GCA 90 bp | TGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTATTGCAAACTTTATATaGCCCAGTACATGGGAACTC | + |
Preference number: 2 (lower is better) Translates to: CLSENSKPQELQCVLLGSIANFI*PSTWEL Trigger: GAGTTCCCATGTACTGGGGCATATAAAGTTTGCAAT...AGACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR-3UTR CAA 90 bp | GGTGATTTAGTCTCTACGCTACTCAGATCCCATGAGTTGCAGGAGAGGCTATGCCTTGTTCCAGGCACCTaGGGTTGGCAGGGTGTCCAC | + |
Preference number: 3 (lower is better) Translates to: GDLVSTLLRSHELQERLCLVPGT*GWQGVH Trigger: GTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAG...GCATAGCCTCTCCTGCAACTCATGGGATCTGAGTAGCGTAGAGACTAAATCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR GCA 72 bp | ACGCTACTCAGATCCCATGAGTTGCAGGAGAGGCTATaGAGACCTCCCCTGACTGTCCAGCTTTCCTGTCTT | + |
Preference number: 3 (lower is better) Translates to: TLLRSHELQERL*RPPLTVQLSCL Trigger: AAGACAGGAAAGCTGGACAGTCAGGGGAGGTCTGCATAGCCTCTCCTGCAACTCATGGGATCTGAGTAGCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR CCA 72 bp | CCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATaGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGG | + |
Preference number: 3 (lower is better) Translates to: PLGIANFICPST*ELQGQEVGVGG Trigger: CCCACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR-3UTR CAA 90 bp | TTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAATGAAGGGTGAGGCATaGTCCCTGCCTGGGACAGAG | + |
Preference number: 3 (lower is better) Translates to: LAVFGKRGPLVLQTLYAPMKGEA*SLPGTE Trigger: CTCTGTCCCAGGCAGGGACAATGCCTCACCCTTCAT...TGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR CCA 72 bp | TCTCTTAGGGTCTCTAGGTGCATATGTAGCAGAAGATaGCCTAGTTGGCCGTCTTTGGGAAGAGAGGCCCCT | + |
Preference number: 3 (lower is better) Translates to: SLRVSRCICSRR*PSWPSLGREAP Trigger: AGGGGCCTCTCTTCCCAAAGACGGCCAACTAGGCCATCTTCTGCTACATATGCACCTAGAGACCCTAAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR GCA 72 bp | TGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATaGCCCAGTACATGGGAACTCCAGGGCCAAGAAGTG | + |
Preference number: 3 (lower is better) Translates to: WEERPLGIANFI*PSTWELQGQEV Trigger: CACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR GCA 72 bp | AGTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTaGAAACTTTATATGCCCCAGTACATGGGAACTCCA | + |
Preference number: 3 (lower is better) Translates to: SWPSLGREAPWY*KLYMPQYMGTP Trigger: TGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR GCA 72 bp | TCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTCTAGGTaGATATGTAGCAGAAGATGGCCTAGTTGGCCGTCT | + |
Preference number: 3 (lower is better) Translates to: SRAPVCSLRVSR*ICSRRWPSWPS Trigger: AGACGGCCAACTAGGCCATCTTCTGCTACATATGCACCTAGAGACCCTAAGAGAACACACTGGAGCTCTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR TCA 72 bp | AGGTTAGAAAGGGCAGTTGAAAAGCCACTTGTTGCCTaGGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTG | + |
Preference number: 3 (lower is better) Translates to: RLERAVEKPLVA*AKTPNLKSSSV Trigger: CACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCAACAAGTGGCTTTTCAACTGCCCTTTCTAACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR CCA 72 bp | GCATATGTAGCAGAAGATGGCCTAGTTGGCCGTCTTTaGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATA | + |
Preference number: 3 (lower is better) Translates to: AYVAEDGLVGRL*EERPLGIANFI Trigger: TATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAACTAGGCCATCTTCTGCTACATATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR TCA 72 bp | CACACACAAAGAATAAGAACATCTATCTCTACAGGGTaGACTACACATTTTCTGGGTAAGAGGTTAGAAAGG | + |
Preference number: 3 (lower is better) Translates to: HTQRIRTSISTG*TTHFLGKRLER Trigger: CCTTTCTAACCTCTTACCCAGAAAATGTGTAGTTCACCCTGTAGAGATAGATGTTCTTATTCTTTGTGTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR CAA 72 bp | CTGGGACAGAGGTCCAAACCTCTTGTTCCAGGCACCTaGGGTTGGCAGGGTGTCCACAGGAGCCTGTGTGAG | + |
Preference number: 4 (lower is better) Translates to: LGQRSKPLVPGT*GWQGVHRSLCE Trigger: CTCACACAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGACCTCTGTCCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR CAA 72 bp | GGCATTGTCCCTGCCTGGGACAGAGGTCCAAACCTCTaGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACA | + |
Preference number: 4 (lower is better) Translates to: GIVPAWDRGPNL*FQAPWVGRVST Trigger: TGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGACCTCTGTCCCAGGCAGGGACAATGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR CAA 72 bp | CAGAGGATAGGTGGACCCCACATGAAGGGTGAGGCATaGTCCCTGCCTGGGACAGAGGTCCAAACCTCTTGT | + |
Preference number: 4 (lower is better) Translates to: QRIGGPHMKGEA*SLPGTEVQTSC Trigger: ACAAGAGGTTTGGACCTCTGTCCCAGGCAGGGACAATGCCTCACCCTTCATGTGGGGTCCACCTATCCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR GCA 90 bp | TCCAAACCTCTTGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACAGGAGCCTGTCTTCTCCCTGTTTTTaGAGGGCTCTCCCGCATCTT | + |
Preference number: 4 (lower is better) Translates to: SKPLVPGTLGWQGVHRSLSSPCF*RALPHL Trigger: AAGATGCGGGAGAGCCCTGCAAAAACAGGGAGAAGA...CAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR TCA 90 bp | TCCAAACCTCTTGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACAGGAGCCTGTGGTGGTTCTGTTCCTaGGGCAAGATTTCATTGATC | + |
Preference number: 4 (lower is better) Translates to: SKPLVPGTLGWQGVHRSLWWFCS*GKISLI Trigger: GATCAATGAAATCTTGCCTCAGGAACAGAACCACCA...CAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR TCA 90 bp | TGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTCAGGGTCCTGAGAGGTaGGGAGCCTGTCAGCATTGT | + |
Preference number: 4 (lower is better) Translates to: CLSENSKPQELQCVLLGSQGPER*GACQHC Trigger: ACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTG...AGACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR CCA 90 bp | TCCAAACCTCTTGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACAGGAGCCTGCCTGAGGCACAAGTTTaGTATTCTCATGTTTCTGCC | + |
Preference number: 4 (lower is better) Translates to: SKPLVPGTLGWQGVHRSLPEAQV*YSHVSA Trigger: GGCAGAAACATGAGAATACCAAACTTGTGCCTCAGG...CAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR TCA 90 bp | CTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGGTTCTTCCCCTTCTTTaGTCTTCGTCTTCCTTCCTG | + |
Preference number: 4 (lower is better) Translates to: LYMPQYMGTPGPRSGSGWVLPLL*SSSSFL Trigger: CAGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAAC...CCACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR GCA 90 bp | TCCAAACCTCTTGTTCCAGGCACCTTGGGTTGGCAGGGTGTCCACAGGAGCCTGGGAGGTTTCTTTGGTTaGTCTCTTCTCCCTGTTTTT | + |
Preference number: 4 (lower is better) Translates to: SKPLVPGTLGWQGVHRSLGGFFG*SLLPVF Trigger: AAAAACAGGGAGAAGAGAGCAACCAAAGAAACCTCC...CAGGCTCCTGTGGACACCCTGCCAACCCAAGGTGCCTGGAACAAGAGGTTTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR GCA 90 bp | GAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTCTAGGTCCTGTCTACAGAGCTaGCCAGTGTTCACAGGGTCC | + |
Preference number: 4 (lower is better) Translates to: ERKLQTSRAPVCSLRVSRSCLQS*PVFTGS Trigger: GGACCCTGTGAACACTGGGCAGCTCTGTAGACAGGA...CCTAGAGACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR TCA 90 bp | CTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAAGAAGTGGGAGTGGGTGGCCCCATGTCTGGCTTTaGCATAAGAGAAGTAATGTC | + |
Preference number: 4 (lower is better) Translates to: LYMPQYMGTPGPRSGSGWPHVWL*HKRSNV Trigger: GACATTACTTCTCTTATGTCAAAGCCAGACATGGGG...CCACCCACTCCCACTTCTTGGCCCTGGAGTTCCCATGTACTGGGGCATATAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR TCA 90 bp | GAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGGTCTCTAGGGCATTGTGCCAGGGTTaGTTCTCCTTGTCTGGAGCA | + |
Preference number: 4 (lower is better) Translates to: ERKLQTSRAPVCSLRVSRALCQG*FSLSGA Trigger: TGCTCCAGACAAGGAGAATCAACCCTGGCACAATGC...CCTAGAGACCCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR TCA 90 bp | GTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCGTGGATCTGAGCAGGTaGATCACAATTGCATCAGCA | + |
Preference number: 4 (lower is better) Translates to: VGRLWEERPLGIANFICPVDLSR*ITIASA Trigger: TGCTGATGCAATTGTGATTCACCTGCTCAGATCCAC...GGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR CCA 90 bp | AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCATTGATTCTCCTTGTCTaGAGCATCCCTGCCCCAGTT | + |
Preference number: 4 (lower is better) Translates to: REAPWYCKLYMPQYMGTPLILLV*SIPAPV Trigger: AACTGGGGCAGGGATGCTCCAGACAAGGAGAATCAA...TGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR GCA 90 bp | AGTCAGTCAGTAAAAACAGGCAAGGGCCCAGAGGATAGGTGGACCCCACATGAAGTATTCTCATGTTTCTaGCCAGCTTTCTTGTGGTTC | + |
Preference number: 4 (lower is better) Translates to: SQSVKTGKGPEDRWTPHEVFSCF*PAFLWF Trigger: GAACCACAAGAAAGCTGGGCAGAAACATGAGAATAC...TTCATGTGGGGTCCACCTATCCTCTGGGCCCTTGCCTGTTTTTACTGACTGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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3UTR CAA 72 bp | TGCATATGTAGCAGAAGATGGCCTAGTTGGCCGTCTTaGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTAT | + |
Preference number: 4 (lower is better) Translates to: CICSRRWPSWPS*GREAPWYCKLY Trigger: ATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAACTAGGCCATCTTCTGCTACATATGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS TCA 90 bp | CTTCCTGTCTACAGAGCTGCCCAGTGTTCACAGGGTCCTGAGAGGTaGGGAGCCTGTCAGCATTGTGCCAGGGTTGATTCTCCTTGTCTG | + |
Preference number: 5 (lower is better) Translates to: LPVYRAAQCSQGPER*GACQHCARVDSPCL Trigger: CAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTGTGAACACTGGGCAGCTCTGTAGACAGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 90 bp | ATCCTGGTCCTTGGGGACATTCCCAACTCAGACTGGGCTTGTCATTaGCAGTTAGCTCCACCACTACCTGAGCTTCATCCTGATGCAGCT | + |
Preference number: 5 (lower is better) Translates to: ILVLGDIPNSDWACH*QLAPPLPELHPDAA Trigger: AGCTGCATCAGGATGAAGCTCAGGTAGTGGTGGAGCTAACTGCCAATGACAAGCCCAGTCTGAGTTGGGAATGTCCCCAAGGACCAGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS-3UTR CAA 90 bp | GGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAGCCTCTGCCCTTGCTaGTTCTTGTTCTTCCCCTTC | + |
Preference number: 5 (lower is better) Translates to: GPLVLQTLYAPVHGNSRASLCPC*FLFFPF Trigger: GAAGGGGAAGAACAAGAACAAGCAAGGGCAGAGGCT...GGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS TCA 90 bp | TCCGTGTTCCTGAGGCTCTGCCCAGCTTTCTGGTGGTTCTGTTCCTaGGGCAAGATTTCATTGATCCTGTGTTTCTGCCCAAGTTTCTGG | + |
Preference number: 5 (lower is better) Translates to: SVFLRLCPAFWWFCS*GKISLILCFCPSFW Trigger: CCAGAAACTTGGGCAGAAACACAGGATCAATGAAATCTTGCCTCAGGAACAGAACCACCAGAAAGCTGGGCAGAGCCTCAGGAACACGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS-3UTR CAA 90 bp | GGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCAGGGCCCTAGCAGGAGTACCTTaGGGGCACTATGAATATGCA | + |
Preference number: 5 (lower is better) Translates to: GPLVLQTLYAPVHGNSRALAGVP*GHYEYA Trigger: TGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAG...GGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR CAA 90 bp | AGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCACTCTTCTCCCTGTTTTaGCAGGGCTCTCCCGCATCT | + |
Preference number: 5 (lower is better) Translates to: REAPWYCKLYMPQYMGTPLFSLF*QGSPAS Trigger: AGATGCGGGAGAGCCCTGCAAAAACAGGGAGAAGAG...TGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS TCA 90 bp | GCCGAGAAGCGCTTTAACACTAGCAGGAGTACCTTTGGGGCACTATaGATATGCAGGGTCTTGGAAGCTGGCATCTTCTGTCTACACCTA | + |
Preference number: 5 (lower is better) Translates to: AEKRFNTSRSTFGAL*ICRVLEAGIFCLHL Trigger: TAGGTGTAGACAGAAGATGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAGTGTTAAAGCGCTTCTCGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS TCA 90 bp | GATTCTCCTTGTCTGGAGCATCCCTGCCCCAGTTTTCTGTGGATCTaGGCAGGTGAATCACAATTGCATCAGCAGGCAGATCAAGTTCAC | + |
Preference number: 5 (lower is better) Translates to: DSPCLEHPCPSFLWI*AGESQLHQQADQVH Trigger: GTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCTCAGATCCACAGAAAACTGGGGCAGGGATGCTCCAGACAAGGAGAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS TCA 90 bp | AAGCAGAAGCCTCTGCCCTTGCTTGTTCTTGTTCTTCCCCTTCTTTaGTCTTCGTCTTCCTTCCTGTCTACAGAGCTGCCCAGTGTTCAC | + |
Preference number: 5 (lower is better) Translates to: KQKPLPLLVLVLPLL*SSSSFLSTELPSVH Trigger: GTGAACACTGGGCAGCTCTGTAGACAGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAACAAGAACAAGCAAGGGCAGAGGCTTCTGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 90 bp | CAGGAGTACCTTTGGGGCACTATGAATATGCAGGGTCTTGGAAGCTaGCATCTTCTGTCTACACCTACCACAGTAGTAGGCATTCTCTCC | + |
Preference number: 5 (lower is better) Translates to: QEYLWGTMNMQGLGS*HLLSTPTTVVGILS Trigger: GGAGAGAATGCCTACTACTGTGGTAGGTGTAGACAGAAGATGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 90 bp | ATAGAGGGCATAAGGCAAAGGTCCTCCAGTAGGCTGGGACAGGTATaGCTTCAGGTCAAGGAACTCTGGGTAGCTTACTTTTCTGTCCAA | + |
Preference number: 5 (lower is better) Translates to: IEGIRQRSSSRLGQV*LQVKELWVAYFSVQ Trigger: TTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGACCTTTGCCTTATGCCCTCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS-3UTR CAA 90 bp | GGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACATGGGAACTCCAGGGCCAGGAGGTTTCTTTGGTaGCTCTCTTCTCCCTGTTTT | + |
Preference number: 5 (lower is better) Translates to: GPLVLQTLYAPVHGNSRARRFLW*LSSPCF Trigger: AAAACAGGGAGAAGAGAGCAACCAAAGAAACCTCCT...GGCCCTGGAGTTCCCATGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR CAA 90 bp | GGTGATTTAGTCTCTACGCTACTCAGATCCCATGAGTTGCAGGAGAGGCTATGCCCTAAGGAGGTTTCTTaGGTTGCTCTCTTCTCCCTG | + |
Preference number: 5 (lower is better) Translates to: GDLVSTLLRSHELQERLCPKEVS*VALFSL Trigger: CAGGGAGAAGAGAGCAACCAAAGAAACCTCCTTAGG...GCATAGCCTCTCCTGCAACTCATGGGATCTGAGTAGCGTAGAGACTAAATCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR CAA 90 bp | TTGTTGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGAGCATTGTGCCAGGGTaGATTCTCCTTGTCTGGAGC | + |
Preference number: 5 (lower is better) Translates to: LLPERKLQTSRAPVCSLRSIVPG*ILLVWS Trigger: GCTCCAGACAAGGAGAATCAACCCTGGCACAATGCT...CCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR CAA 90 bp | TTGTTGCCTGAGCGAAAACTCCAAACCTCAAGAGCTCCAGTGTGTTCTCTTAGGCAGAAGCCTCTGCCCTaGCTTGTTCTTGTTCTTCCC | + |
Preference number: 5 (lower is better) Translates to: LLPERKLQTSRAPVCSLRQKPLP*LVLVLP Trigger: GGGAAGAACAAGAACAAGCAAGGGCAGAGGCTTCTG...CCTAAGAGAACACACTGGAGCTCTTGAGGTTTGGAGTTTTCGCTCAGGCAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS-3UTR CAA 90 bp | GTTGGCCGTCTTTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCTGTTCTTCCCCTTCTTaGATCTTCGTCTTCCTTCCT | + |
Preference number: 5 (lower is better) Translates to: VGRLWEERPLGIANFICPCSSPS*IFVFLP Trigger: AGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAACA...GGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAAAGACGGCCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000106892.2 |
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CDS TCA 90 bp | TCATTGATCCTGTGTTTCTGCCCAAGTTTCTGGTGGTTCTGTTCCTaGGGCACAAGTTTGGTATTCTCATGTTTCTGCCCAGCTTTCTTG | + |
Preference number: 5 (lower is better) Translates to: SLILCFCPSFWWFCS*GTSLVFSCFCPAFL Trigger: CAAGAAAGCTGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTGGGCAGAAACACAGGATCAATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 90 bp | GTTTCTGCCCAAGTTTCTGGTGGTTCTGTTCCTGAGGCACAAGTTTaGTATTCTCATGTTTCTGCCCAGCTTTCTTGTGGTTCTTTTCCT | + |
Preference number: 5 (lower is better) Translates to: VSAQVSGGSVPEAQV*YSHVSAQLSCGSFP Trigger: AGGAAAAGAACCACAAGAAAGCTGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTGGGCAGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS TCA 72 bp | TCCTGTCTACAGAGCTGCCCAGTGTTCACAGGGTCCTaGGAGGTGAGGAGCCTGTCAGCATTGTGCCAGGGT | + |
Preference number: 6 (lower is better) Translates to: SCLQSCPVFTGS*EVRSLSALCQG Trigger: ACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTGTGAACACTGGGCAGCTCTGTAGACAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CAA 90 bp | CACAGGGTCCTGAGAGGTGAGGAGCCTGTCAGCATTGTGCCAGGGTaGATTCTCCTTGTCTGGAGCATCCCTGCCCCAGTTTTCTGTGGA | + |
Preference number: 6 (lower is better) Translates to: HRVLRGEEPVSIVPG*ILLVWSIPAPVFCG Trigger: TCCACAGAAAACTGGGGCAGGGATGCTCCAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CAA 72 bp | CTGAGAGGTGAGGAGCCTGTCAGCATTGTGCCAGGGTaGATTCTCCTTGTCTGGAGCATCCCTGCCCCAGTT | + |
Preference number: 6 (lower is better) Translates to: LRGEEPVSIVPG*ILLVWSIPAPV Trigger: AACTGGGGCAGGGATGCTCCAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS TCA 72 bp | TACAGAGCTGCCCAGTGTTCACAGGGTCCTGAGAGGTaGGGAGCCTGTCAGCATTGTGCCAGGGTTGATTCT | + |
Preference number: 6 (lower is better) Translates to: YRAAQCSQGPER*GACQHCARVDS Trigger: AGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTGTGAACACTGGGCAGCTCTGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 72 bp | CGCATCCTGGTCCTTGGGGACATTCCCAACTCAGACTaGGCTTGTCATTGGCAGTTAGCTCCACCACTACCT | + |
Preference number: 6 (lower is better) Translates to: RILVLGDIPNSD*ACHWQLAPPLP Trigger: AGGTAGTGGTGGAGCTAACTGCCAATGACAAGCCCAGTCTGAGTTGGGAATGTCCCCAAGGACCAGGATGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 72 bp | CCTGTCAGCATTGTGCCAGGGTTGATTCTCCTTGTCTaGAGCATCCCTGCCCCAGTTTTCTGTGGATCTGAG | + |
Preference number: 6 (lower is better) Translates to: PVSIVPGLILLV*SIPAPVFCGSE Trigger: CTCAGATCCACAGAAAACTGGGGCAGGGATGCTCCAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS TCA 72 bp | CTGAGGCTCTGCCCAGCTTTCTGGTGGTTCTGTTCCTaGGGCAAGATTTCATTGATCCTGTGTTTCTGCCCA | + |
Preference number: 6 (lower is better) Translates to: LRLCPAFWWFCS*GKISLILCFCP Trigger: TGGGCAGAAACACAGGATCAATGAAATCTTGCCTCAGGAACAGAACCACCAGAAAGCTGGGCAGAGCCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CAA 72 bp | AGGCCGAGAAGCGCTTTAACACTAGCAGGAGTACCTTaGGGGCACTATGAATATGCAGGGTCTTGGAAGCTG | + |
Preference number: 6 (lower is better) Translates to: RPRSALTLAGVP*GHYEYAGSWKL Trigger: CAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAGTGTTAAAGCGCTTCTCGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CAA 90 bp | CAAGCAGAAGCCTCTGCCCTTGCTTGTTCTTGTTCTTCCCCTTCTTaGATCTTCGTCTTCCTTCCTGTCTACAGAGCTGCCCAGTGTTCA | + |
Preference number: 6 (lower is better) Translates to: QAEASALACSCSSPS*IFVFLPVYRAAQCS Trigger: TGAACACTGGGCAGCTCTGTAGACAGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAACAAGAACAAGCAAGGGCAGAGGCTTCTGCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 72 bp | TACATGGGCTTCCATAGCACACATCTTACAGCCTTCTaGGGAACAACAGGTTTGACTGTACTCCTGGGACAG | + |
Preference number: 6 (lower is better) Translates to: YMGFHSTHLTAF*GTTGLTVLLGQ Trigger: CTGTCCCAGGAGTACAGTCAAACCTGTTGTTCCCCAGAAGGCTGTAAGATGTGTGCTATGGAAGCCCATGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 72 bp | CTTTGGGGCACTATGAATATGCAGGGTCTTGGAAGCTaGCATCTTCTGTCTACACCTACCACAGTAGTAGGC | + |
Preference number: 6 (lower is better) Translates to: LWGTMNMQGLGS*HLLSTPTTVVG Trigger: GCCTACTACTGTGGTAGGTGTAGACAGAAGATGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 72 bp | ATAAGGCAAAGGTCCTCCAGTAGGCTGGGACAGGTATaGCTTCAGGTCAAGGAACTCTGGGTAGCTTACTTT | + |
Preference number: 6 (lower is better) Translates to: IRQRSSSRLGQV*LQVKELWVAYF Trigger: AAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGACCTTTGCCTTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 72 bp | AGGCTGGGACAGGTATGGCTTCAGGTCAAGGAACTCTaGGTAGCTTACTTTTCTGTCCAACTTGTTACCCAT | + |
Preference number: 6 (lower is better) Translates to: RLGQVWLQVKEL*VAYFSVQLVTH Trigger: ATGGGTAACAAGTTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS TCA 72 bp | CTGTGTTTCTGCCCAAGTTTCTGGTGGTTCTGTTCCTaGGGCACAAGTTTGGTATTCTCATGTTTCTGCCCA | + |
Preference number: 6 (lower is better) Translates to: LCFCPSFWWFCS*GTSLVFSCFCP Trigger: TGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTGGGCAGAAACACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS GCA 72 bp | CCAGTTTTCTGTGGATCTGAGCAGGTGAATCACAATTaGATCAGCAGGCAGATCAAGTTCACCTTCCGTGTT | + |
Preference number: 6 (lower is better) Translates to: PVFCGSEQVNHN*ISRQIKFTFRV Trigger: AACACGGAAGGTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCTCAGATCCACAGAAAACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |
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CDS CCA 72 bp | CAAGTTTCTGGTGGTTCTGTTCCTGAGGCACAAGTTTaGTATTCTCATGTTTCTGCCCAGCTTTCTTGTGGT | + |
Preference number: 6 (lower is better) Translates to: QVSGGSVPEAQV*YSHVSAQLSCG Trigger: ACCACAAGAAAGCTGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079348.4 ENSMUST00000106892.2 |