Pregenerated sensors for USP17LB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062369Ensembl transcript IDs: ENSMUST00000076501.2, ENSMUST00000106814.3
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TGGAGCCCGCATCCTGGTCCTTGGGGACTCTCCCAACTCAGACTGTaGTTTCCATTGGCAGCCAGCTCCTCTACCACCTGGGCTTCATCC | + |
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Preference number: 5 (lower is better) Translates to: WSPHPGPWGLSQLRL*FPLAASSSTTWASS Trigger: GGATGAAGCCCAGGTGGTAGAGGAGCTGGCTGCCAATGGAAAGCACAGTCTGAGTTGGGAGAGTCCCCAAGGACCAGGATGCGGGCTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS TCA 90 bp | TACCACCTGGGCTTCATCCTGATGCAGCTCTGGGGCACTAGGAGGTaGCATGGCTGGATCTGCTTCTGGGAAGGAGAGAGCAACCACCAT | + |
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Preference number: 5 (lower is better) Translates to: YHLGFILMQLWGTRR*HGWICFWEGESNHH Trigger: ATGGTGGTTGCTCTCTCCTTCCCAGAAGCAGATCCAGCCATGTCACCTCCTAGTGCCCCAGAGCTGCATCAGGATGAAGCCCAGGTGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076501.2 |
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| CDS CCA 90 bp | AAGGCAGAGGTCAAATTCTGGGAGGGCTTCATAACATCCCCTGAGTaGGTGTGCAGGAGACTCTGGGTCACATGGGCTTCCATAGCACAC | + |
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Preference number: 5 (lower is better) Translates to: KAEVKFWEGFITSPE*VCRRLWVTWASIAH Trigger: GTGTGCTATGGAAGCCCATGTGACCCAGAGTCTCCTGCACACCCACTCAGGGGATGTTATGAAGCCCTCCCAGAATTTGACCTCTGCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS GCA 90 bp | GAGGTCAAATTCTGGGAGGGCTTCATAACATCCCCTGAGTGGGTGTaGAGGAGACTCTGGGTCACATGGGCTTCCATAGCACACATCTTA | + |
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Preference number: 5 (lower is better) Translates to: EVKFWEGFITSPEWV*RRLWVTWASIAHIL Trigger: TAAGATGTGTGCTATGGAAGCCCATGTGACCCAGAGTCTCCTGCACACCCACTCAGGGGATGTTATGAAGCCCTCCCAGAATTTGACCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 90 bp | TTCATAACATCCCCTGAGTGGGTGTGCAGGAGACTCTGGGTCACATaGGCTTCCATAGCACACATCTTACAGCCTTCTGGGGAACAACAG | + |
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Preference number: 5 (lower is better) Translates to: FITSPEWVCRRLWVT*ASIAHILQPSGEQQ Trigger: CTGTTGTTCCCCAGAAGGCTGTAAGATGTGTGCTATGGAAGCCCATGTGACCCAGAGTCTCCTGCACACCCACTCAGGGGATGTTATGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 90 bp | CCCTCCAGTAGGCTGGGACAGGTATGGCTTCAGGTCAAGGAACTCTaGGTAGCTTACTTTTCTGTCCAACTTTTTACCCATAGAGCCCGA | + |
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Preference number: 5 (lower is better) Translates to: PSSRLGQVWLQVKEL*VAYFSVQLFTHRAR Trigger: TCGGGCTCTATGGGTAAAAAGTTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 90 bp | ATAGAGGGCATAAGGCAAAGGCCCTCCAGTAGGCTGGGACAGGTATaGCTTCAGGTCAAGGAACTCTGGGTAGCTTACTTTTCTGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: IEGIRQRPSSRLGQV*LQVKELWVAYFSVQ Trigger: TTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGGCCTTTGCCTTATGCCCTCTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS TCA 90 bp | TCAGTATTCCTGAGGTTCTGCCCACCTTTCTCGTGGTTCTGTTCCTaGGGCGTGAGTTTGGTATTCTCTTGTTTCTGCCCAGCTTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SVFLRFCPPFSWFCS*GVSLVFSCFCPAFW Trigger: CCAGAAAGCTGGGCAGAAACAAGAGAATACCAAACTCACGCCTCAGGAACAGAACCACGAGAAAGGTGGGCAGAACCTCAGGAATACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS TCA 90 bp | ATGGGTGAGCTGTCCTCAGAGGTGGGTTCTGATTGTCTGTGCACTTaGAGGCAGGATTCATGCATTGTTTCCAAGGTGAACATGAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: MGELSSEVGSDCLCT*RQDSCIVSKVNMRN Trigger: GTTTCTCATGTTCACCTTGGAAACAATGCATGAATCCTGCCTTCAAGTGCACAGACAATCAGAACCCACCTCTGAGGACAGCTCACCCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS TCA 90 bp | TTGGTATTCTCTTGTTTCTGCCCAGCTTTCTGGTGGTCCTGTTCCTaGAGAACTTTCCCCTCCCCTAAGGAGGTTTCTTTGGATGATCTC | + |
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Preference number: 5 (lower is better) Translates to: LVFSCFCPAFWWSCS*RTFPSPKEVSLDDL Trigger: GAGATCATCCAAAGAAACCTCCTTAGGGGAGGGGAAAGTTCTTCAGGAACAGGACCACCAGAAAGCTGGGCAGAAACAAGAGAATACCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 72 bp | CTTGGGGACTCTCCCAACTCAGACTGTGCTTTCCATTaGCAGCCAGCTCCTCTACCACCTGGGCTTCATCCT | + |
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Preference number: 6 (lower is better) Translates to: LGDSPNSDCAFH*QPAPLPPGLHP Trigger: AGGATGAAGCCCAGGTGGTAGAGGAGCTGGCTGCCAATGGAAAGCACAGTCTGAGTTGGGAGAGTCCCCAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 72 bp | CTGTTGCCTGTGTTCTGGAGCCCGCATCCTGGTCCTTaGGGACTCTCCCAACTCAGACTGTGCTTTCCATTG | + |
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Preference number: 6 (lower is better) Translates to: LLPVFWSPHPGP*GLSQLRLCFPL Trigger: CAATGGAAAGCACAGTCTGAGTTGGGAGAGTCCCCAAGGACCAGGATGCGGGCTCCAGAACACAGGCAACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 72 bp | TCCCCTGAGTGGGTGTGCAGGAGACTCTGGGTCACATaGGCTTCCATAGCACACATCTTACAGCCTTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: SPEWVCRRLWVT*ASIAHILQPSG Trigger: CCCAGAAGGCTGTAAGATGTGTGCTATGGAAGCCCATGTGACCCAGAGTCTCCTGCACACCCACTCAGGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS TCA 72 bp | AGAGGTCAAATTCTGGGAGGGCTTCATAACATCCCCTaGGTGGGTGTGCAGGAGACTCTGGGTCACATGGGC | + |
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Preference number: 6 (lower is better) Translates to: RGQILGGLHNIP*VGVQETLGHMG Trigger: GCCCATGTGACCCAGAGTCTCCTGCACACCCACTCAGGGGATGTTATGAAGCCCTCCCAGAATTTGACCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 72 bp | TCCTGCTTGCGCTTGTGGAAGGCAGAGGTCAAATTCTaGGAGGGCTTCATAACATCCCCTGAGTGGGTGTGC | + |
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Preference number: 6 (lower is better) Translates to: SCLRLWKAEVKF*EGFITSPEWVC Trigger: GCACACCCACTCAGGGGATGTTATGAAGCCCTCCCAGAATTTGACCTCTGCCTTCCACAAGCGCAAGCAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS TCA 72 bp | ATCCAGGGGGATGTCCAGGAAGGGATCATAGGAATATaGGGTGCCCTGGCAGTGGTGACACTTGATCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: IQGDVQEGIIGI*GALAVVTLDLR Trigger: TCTCAGATCAAGTGTCACCACTGCCAGGGCACCTCATATTCCTATGATCCCTTCCTGGACATCCCCCTGGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 72 bp | ATAAGGCAAAGGCCCTCCAGTAGGCTGGGACAGGTATaGCTTCAGGTCAAGGAACTCTGGGTAGCTTACTTT | + |
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Preference number: 6 (lower is better) Translates to: IRQRPSSRLGQV*LQVKELWVAYF Trigger: AAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCTACTGGAGGGCCTTTGCCTTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS TCA 72 bp | TCTTGTTTCTGCCCAGCTTTCTGGTGGTCCTGTTCCTaGAGAACTTTCCCCTCCCCTAAGGAGGTTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: SCFCPAFWWSCS*RTFPSPKEVSL Trigger: CAAAGAAACCTCCTTAGGGGAGGGGAAAGTTCTTCAGGAACAGGACCACCAGAAAGCTGGGCAGAAACAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS TCA 72 bp | TCTGCCCACCTTTCTCGTGGTTCTGTTCCTGAGGCGTaGGTTTGGTATTCTCTTGTTTCTGCCCAGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: SAHLSRGSVPEA*VWYSLVSAQLS Trigger: AGAAAGCTGGGCAGAAACAAGAGAATACCAAACTCACGCCTCAGGAACAGAACCACGAGAAAGGTGGGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 72 bp | AGGCTGGGACAGGTATGGCTTCAGGTCAAGGAACTCTaGGTAGCTTACTTTTCTGTCCAACTTTTTACCCAT | + |
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Preference number: 6 (lower is better) Translates to: RLGQVWLQVKEL*VAYFSVQLFTH Trigger: ATGGGTAAAAAGTTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTGTCCCAGCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CAA 72 bp | GCATCAAGAACCTCATGTATTCTGCCCTCTGGCATGTaGATACTACCCTTTTTGAGGTCATTCTGCTGCACA | + |
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Preference number: 6 (lower is better) Translates to: ASRTSCILPSGM*ILPFLRSFCCT Trigger: TGTGCAGCAGAATGACCTCAAAAAGGGTAGTATCAACATGCCAGAGGGCAGAATACATGAGGTTCTTGATGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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| CDS CCA 72 bp | GTATTTGGCATCAAGAACCTCATGTATTCTGCCCTCTaGCATGTTGATACTACCCTTTTTGAGGTCATTCTG | + |
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Preference number: 6 (lower is better) Translates to: VFGIKNLMYSAL*HVDTTLFEVIL Trigger: CAGAATGACCTCAAAAAGGGTAGTATCAACATGCCAGAGGGCAGAATACATGAGGTTCTTGATGCCAAATAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076501.2 ENSMUST00000106814.3 |
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