Pregenerated sensors for USP12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029640Ensembl transcript IDs: ENSMUST00000085614.6
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCGCAGGCCTGTGCTCCTGGCTCTACCTCCCATGCTCTTGGTTGTaGTTCTCTGTGCGATGCTGGCAGATCACAAACCCAGCCAGGGTA | + |
|
Preference number: 1 (lower is better) Translates to: LAGLCSWLYLPCSWL*FSVRCWQITNPARV Trigger: TACCCTGGCTGGGTTTGTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCACAGGCCTGCGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 90 bp | GAGATTACTACTTCACCAAAACGTAATCTTCCAAAGGGCGTGCGCTaGCCTGCTGCCGGGGTTCTGGCTGCTCTACTAGCCCTTCCCAAG | + |
|
Preference number: 1 (lower is better) Translates to: EITTSPKRNLPKGVR*PAAGVLAALLALPK Trigger: CTTGGGAAGGGCTAGTAGAGCAGCCAGAACCCCGGCAGCAGGGCAGCGCACGCCCTTTGGAAGATTACGTTTTGGTGAAGTAGTAATCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 90 bp | ACTGCTCCCATGCACAGTGTACGCATCCCGCACGCTGGCACACAGTaGAGTGTGCTCAATCAGACTAGCACATCTAATTCTTCCACTGCC | + |
|
Preference number: 1 (lower is better) Translates to: TAPMHSVRIPHAGTQ*SVLNQTSTSNSSTA Trigger: GGCAGTGGAAGAATTAGATGTGCTAGTCTGATTGAGCACACTGCACTGTGTGCCAGCGTGCGGGATGCGTACACTGTGCATGGGAGCAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 90 bp | TCCTGGCTCTACCTCCCATGCTCTTGGTTGTGGTTCTCTGTGCGATaGTGGCAGATCACAAACCCAGCCAGGGTAAGGCTTCAGAAACTA | + |
|
Preference number: 1 (lower is better) Translates to: SWLYLPCSWLWFSVR*WQITNPARVRLQKL Trigger: TAGTTTCTGAAGCCTTACCCTGGCTGGGTTTGTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 90 bp | TTTAACTTCAAAAATGTGTGTGCAAGCAAACACAGTATTCAGTGCTaGACAAGGCCGCCTGGAGGACCCAGCCGCACTGTATGCCTTGTC | + |
|
Preference number: 1 (lower is better) Translates to: FNFKNVCASKHSIQC*TRPPGGPSRTVCLV Trigger: GACAAGGCATACAGTGCGGCTGGGTCCTCCAGGCGGCCTTGTGCAGCACTGAATACTGTGTTTGCTTGCACACACATTTTTGAAGTTAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 90 bp | TGTTTTAACTTCAAAAATGTGTGTGCAAGCAAACACAGTATTCAGTaGTGCACAAGGCCGCCTGGAGGACCCAGCCGCACTGTATGCCTT | + |
|
Preference number: 1 (lower is better) Translates to: CFNFKNVCASKHSIQ*CTRPPGGPSRTVCL Trigger: AAGGCATACAGTGCGGCTGGGTCCTCCAGGCGGCCTTGTGCAGCACTGAATACTGTGTTTGCTTGCACACACATTTTTGAAGTTAAAACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | TGCAAACCGTCCAGCGCAGACCTGAGCCAAGCAGGCCTGCTCGCCCGGAGGTTGCCACCGCCGCAGCTGTaGACGGTCCTGGGGTTCTGG | + |
|
Preference number: 2 (lower is better) Translates to: CKPSSADLSQAGLLARRLPPPQL*TVLGFW Trigger: CCAGAACCCCAGGACCGTGCACAGCTGCGGCGGTGG...CAACCTCCGGGCGAGCAGGCCTGCTTGGCTCAGGTCTGCGCTGGACGGTTTGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CCA 90 bp | GCCACCGCCGCAGCTGTGCACGGTCCTGGGGTTCTGGCTGGCAAGAATGCCGGCGCCCTGAGCGTCCTGTaGCTGTCTGTCTGTCTGTCT | + |
|
Preference number: 2 (lower is better) Translates to: ATAAAVHGPGVLAGKNAGALSVL*LSVCLS Trigger: AGACAGACAGACAGACAGCCACAGGACGCTCAGGGC...GCCGGCATTCTTGCCAGCCAGAACCCCAGGACCGTGCACAGCTGCGGCGGTGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR TCA 90 bp | TGCAAACCGTCCAGCGCAGACCTGAGCCAAGCAGGCCTGCTCGCCCGGAGGTTGATGCGGAGGGCAGTGTaGGGCTACCCAGAGTCTGAC | + |
|
Preference number: 2 (lower is better) Translates to: CKPSSADLSQAGLLARRLMRRAV*GYPESD Trigger: GTCAGACTCTGGGTAGCCTCACACTGCCCTCCGCAT...CAACCTCCGGGCGAGCAGGCCTGCTTGGCTCAGGTCTGCGCTGGACGGTTTGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | GCCACCGCCGCAGCTGTGCACGGTCCTGGGGTTCTGGCTGGCAAGAATGCCGGCTGTGTCTGTGCTCTGTaGGTCAGGAAGGCAACTGCA | + |
|
Preference number: 2 (lower is better) Translates to: ATAAAVHGPGVLAGKNAGCVCAL*VRKATA Trigger: TGCAGTTGCCTTCCTGACGCACAGAGCACAGACACA...GCCGGCATTCTTGCCAGCCAGAACCCCAGGACCGTGCACAGCTGCGGCGGTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CAA 90 bp | GCCCTCGCAGGCCTGTGCTCCTGGCTCTACCTCCCATGCTCTTGGTaGTGGTTCTCTGTGCGATGCTGGCAGATCACAAACCCAGCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: ALAGLCSWLYLPCSW*WFSVRCWQITNPAR Trigger: CCTGGCTGGGTTTGTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCACAGGCCTGCGAGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CAA 90 bp | GTAGGCCCTCGCAGGCCTGTGCTCCTGGCTCTACCTCCCATGCTCTaGGTTGTGGTTCTCTGTGCGATGCTGGCAGATCACAAACCCAGC | + |
|
Preference number: 2 (lower is better) Translates to: VGPRRPVLLALPPML*VVVLCAMLADHKPS Trigger: GCTGGGTTTGTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCACAGGCCTGCGAGGGCCTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | GCCACCGCCGCAGCTGTGCACGGTCCTGGGGTTCTGGCTGGCAAGAATGCCGGCCTTCCTTGTGTGAACTaGACAGACAGCATGATTCCT | + |
|
Preference number: 2 (lower is better) Translates to: ATAAAVHGPGVLAGKNAGLPCVN*TDSMIP Trigger: AGGAATCATGCTGTCTGTGCAGTTCACACAAGGAAG...GCCGGCATTCTTGCCAGCCAGAACCCCAGGACCGTGCACAGCTGCGGCGGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | TGCAAACCGTCCAGCGCAGACCTGAGCCAAGCAGGCCTGCTCGCCCGGAGGTTGGGTTGTGGTTCTCTGTaGGATGCTGGCAGATCACAA | + |
|
Preference number: 2 (lower is better) Translates to: CKPSSADLSQAGLLARRLGCGSL*DAGRSQ Trigger: TTGTGATCTGCCAGCATCGCACAGAGAACCACAACC...CAACCTCCGGGCGAGCAGGCCTGCTTGGCTCAGGTCTGCGCTGGACGGTTTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR TCA 90 bp | GTGCTCCTGGCTCTACCTCCCATGCTCTTGGTTGTGGTTCTCTGTGCGATGCTGAGTGAGCTACTGCCCTaGGCGTCCTGTGGCTGTCTG | + |
|
Preference number: 2 (lower is better) Translates to: VLLALPPMLLVVVLCAMLSELLP*ASCGCL Trigger: CAGACAGCCACAGGACGCTCAGGGCAGTAGCTCACT...CAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR TCA 90 bp | GCCACCGCCGCAGCTGTGCACGGTCCTGGGGTTCTGGCTGGCAAGAATGCCGGCCAGGACTACTTCAGCTaGCAAACTAATAAAATATGC | + |
|
Preference number: 2 (lower is better) Translates to: ATAAAVHGPGVLAGKNAGQDYFS*QTNKIC Trigger: GCATATTTTATTAGTTTGTCAGCTGAAGTAGTCCTG...GCCGGCATTCTTGCCAGCCAGAACCCCAGGACCGTGCACAGCTGCGGCGGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR TCA 90 bp | GCCTTGTCTGAAACTTGCATCTGCCCTCATCATAATCGCAGGCAAACAAACGACCGTCCAGCGCAGACCTaGGCCAAGCAGGCCTGCTCG | + |
|
Preference number: 2 (lower is better) Translates to: ALSETCICPHHNRRQTNDRPAQT*AKQACS Trigger: CGAGCAGGCCTGCTTGGCTCAGGTCTGCGCTGGACG...GTCGTTTGTTTGCCTGCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CCA 90 bp | GCCTTGTCTGAAACTTGCATCTGCCCTCATCATAATCGCAGGCAAACAAACGACCTGCACAAGGCCGCCTaGAGGACCCAGCCGCACTGT | + |
|
Preference number: 2 (lower is better) Translates to: ALSETCICPHHNRRQTNDLHKAA*RTQPHC Trigger: ACAGTGCGGCTGGGTCCTCCAGGCGGCCTTGTGCAG...GTCGTTTGTTTGCCTGCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | TCCCATGCTACACCTCACCTCATGGAGAACTTAACTAGGTTTTTCCTGCTATGTATCTTCCAAAGGGCGTaGGCTGCCCTGCTGCCGGGG | + |
|
Preference number: 2 (lower is better) Translates to: SHATPHLMENLTRFFLLCIFQRA*AALLPG Trigger: CCCCGGCAGCAGGGCAGCGCACGCCCTTTGGAAGAT...ACATAGCAGGAAAAACCTAGTTAAGTTCTCCATGAGGTGAGGTGTAGCATGGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | TGCAAACCGTCCAGCGCAGACCTGAGCCAAGCAGGCCTGCTCGCCCGGAGGTTGCTTCAAAAATGTGTGTaGAAGCAAACACAGTATTCA | + |
|
Preference number: 2 (lower is better) Translates to: CKPSSADLSQAGLLARRLLQKCV*KQTQYS Trigger: TGAATACTGTGTTTGCTTGCACACACATTTTTGAAG...CAACCTCCGGGCGAGCAGGCCTGCTTGGCTCAGGTCTGCGCTGGACGGTTTGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CCA 90 bp | GTGCTCCTGGCTCTACCTCCCATGCTCTTGGTTGTGGTTCTCTGTGCGATGCTGAAATGTGTTGGCAGCTaGCAGCTGCTTTACACGAGA | + |
|
Preference number: 2 (lower is better) Translates to: VLLALPPMLLVVVLCAMLKCVGS*QLLYTR Trigger: TCTCGTGTAAAGCAGCTGCCAGCTGCCAACACATTT...CAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | GCCTTGTCTGAAACTTGCATCTGCCCTCATCATAATCGCAGGCAAACAAACGACTGGGCTCTGTGTCTGTaGTCTGTGCGTCAGGAAGGC | + |
|
Preference number: 2 (lower is better) Translates to: ALSETCICPHHNRRQTNDWALCL*SVRQEG Trigger: GCCTTCCTGACGCACAGAGCACAGACACAGAGCCCA...GTCGTTTGTTTGCCTGCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CCA 90 bp | GCTGCCCAAGCAAACATGTACATAATAACACAGCAGCTAGCCTTGTCTGAAACTCCATGCTCTTGGTTGTaGTTCTCTGTGCGATGCTGG | + |
|
Preference number: 2 (lower is better) Translates to: AAQANMYIITQQLALSETPCSWL*FSVRCW Trigger: CCAGCATCGCACAGAGAACCACAACCAAGAGCATGG...AGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTACATGTTTGCTTGGGCAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | TACATAATAACACAGCAGCTAGCCTTGTCTGAAACTTGCATCTGCCCTCATCATCACGCTGGCACACAGTaGAGTGTGCTCAATCAGACT | + |
|
Preference number: 2 (lower is better) Translates to: YIITQQLALSETCICPHHHAGTQ*SVLNQT Trigger: AGTCTGATTGAGCACACTGCACTGTGTGCCAGCGTG...ATGATGAGGGCAGATGCAAGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | TCCCATGCTACACCTCACCTCATGGAGAACTTAACTAGGTTTTTCCTGCTATGTTGGCTCTACCTCCCATaGTCTTGGTTGTGGTTCTCT | + |
|
Preference number: 2 (lower is better) Translates to: SHATPHLMENLTRFFLLCWLYLP*SWLWFS Trigger: AGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCA...ACATAGCAGGAAAAACCTAGTTAAGTTCTCCATGAGGTGAGGTGTAGCATGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CCA 90 bp | GCCTTGTCTGAAACTTGCATCTGCCCTCATCATAATCGCAGGCAAACAAACGACCTACAGAAAATGTGTTaGCAGCTGGCAGCTGCTTTA | + |
|
Preference number: 2 (lower is better) Translates to: ALSETCICPHHNRRQTNDLQKMC*QLAAAL Trigger: TAAAGCAGCTGCCAGCTGCCAACACATTTTCTGTAG...GTCGTTTGTTTGCCTGCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CAA 90 bp | ACAGCTGCCCAAGCAAACATGTACATAATAACACAGCAGCTAGCCTaGTCTGAAACTTGCATCTGCCCTCATCATAATCGCAGGCAAACA | + |
|
Preference number: 2 (lower is better) Translates to: TAAQANMYIITQQLA*SETCICPHHNRRQT Trigger: TGTTTGCCTGCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTACATGTTTGCTTGGGCAGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR TCA 90 bp | TACATAATAACACAGCAGCTAGCCTTGTCTGAAACTTGCATCTGCCCTCATCATTTATCTTTGACCTCCTaGCACTGGGCTCTGTGTCTG | + |
|
Preference number: 2 (lower is better) Translates to: YIITQQLALSETCICPHHLSLTS*HWALCL Trigger: CAGACACAGAGCCCAGTGTCAGGAGGTCAAAGATAA...ATGATGAGGGCAGATGCAAGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR GCA 90 bp | GCTGCCCAAGCAAACATGTACATAATAACACAGCAGCTAGCCTTGTCTGAAACTTGGCACTTCACACAATaGTTAGACTCAACCAGTTTA | + |
|
Preference number: 2 (lower is better) Translates to: AAQANMYIITQQLALSETWHFTQ*LDSTSL Trigger: TAAACTGGTTGAGTCTAAGCATTGTGTGAAGTGCCA...AGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTACATGTTTGCTTGGGCAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | AGACCGGAAGAACACGCCATGCCACCGCCGCAGCTGTaGACGGTCCTGGGGTTCTGGCTGGCAAGAATGCCG | + |
|
Preference number: 3 (lower is better) Translates to: RPEEHAMPPPQL*TVLGFWLARMP Trigger: CGGCATTCTTGCCAGCCAGAACCCCAGGACCGTGCACAGCTGCGGCGGTGGCATGGCGTGTTCTTCCGGTCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CCA 72 bp | CACCGCCGCAGCTGTGCACGGTCCTGGGGTTCTGGCTaGCAAGAATGCCGGCTTCACGCTGCGGCTTCCTTT | + |
|
Preference number: 3 (lower is better) Translates to: HRRSCARSWGSG*QECRLHAAASF Trigger: AAAGGAAGCCGCAGCGTGAAGCCGGCATTCTTGCCAGCCAGAACCCCAGGACCGTGCACAGCTGCGGCGGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | TGCACAAGGCCGCCTGGAGGACCCAGCCGCACTGTATaGCTTGTCTCTGAACCCAAGGCTGCAGCCGTGGCA | + |
|
Preference number: 3 (lower is better) Translates to: CTRPPGGPSRTV*LVSEPKAAAVA Trigger: TGCCACGGCTGCAGCCTTGGGTTCAGAGACAAGGCATACAGTGCGGCTGGGTCCTCCAGGCGGCCTTGTGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | GCCCTCGCAGGCCTGTGCTCCTGGCTCTACCTCCCATaGTCTTGGTTGTGGTTCTCTGTGCGATGCTGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: ALAGLCSWLYLP*SWLWFSVRCWQ Trigger: CTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCACAGGCCTGCGAGGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | AGTAAATTAGGAGCCAACACCCAGGAGCCCTTCCCCTaGAAACCGTCCAGCGCAGACCTGAGCCAAGCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: SKLGANTQEPFP*KPSSADLSQAG Trigger: GCCTGCTTGGCTCAGGTCTGCGCTGGACGGTTTGCAGGGGAAGGGCTCCTGGGTGTTGGCTCCTAATTTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | ACTTCACCAAAACGTAATCTTCCAAAGGGCGTGCGCTaGCCTGCTGCCGGGGTTCTGGCTGCTCTACTAGCC | + |
|
Preference number: 3 (lower is better) Translates to: TSPKRNLPKGVR*PAAGVLAALLA Trigger: GGCTAGTAGAGCAGCCAGAACCCCGGCAGCAGGGCAGCGCACGCCCTTTGGAAGATTACGTTTTGGTGAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | TTACTACTTCACCAAAACGTAATCTTCCAAAGGGCGTaGGCTGCCCTGCTGCCGGGGTTCTGGCTGCTCTAC | + |
|
Preference number: 3 (lower is better) Translates to: LLLHQNVIFQRA*AALLPGFWLLY Trigger: GTAGAGCAGCCAGAACCCCGGCAGCAGGGCAGCGCACGCCCTTTGGAAGATTACGTTTTGGTGAAGTAGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CCA 72 bp | CTCCCATGCTCTTGGTTGTGGTTCTCTGTGCGATGCTaGCAGATCACAAACCCAGCCAGGGTAAGGCTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: LPCSWLWFSVRC*QITNPARVRLQ Trigger: CTGAAGCCTTACCCTGGCTGGGTTTGTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CCA 72 bp | CTGTGCTCCTGGCTCTACCTCCCATGCTCTTGGTTGTaGTTCTCTGTGCGATGCTGGCAGATCACAAACCCA | + |
|
Preference number: 3 (lower is better) Translates to: LCSWLYLPCSWL*FSVRCWQITNP Trigger: TGGGTTTGTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CAA 90 bp | TGCAAACCGTCCAGCGCAGACCTGAGCCAAGCAGGCCTGCTCGCCCGGAGGTTGACTATCAGAAAGAGTTaGTCAAAGGCCATCTTTTTC | + |
|
Preference number: 3 (lower is better) Translates to: CKPSSADLSQAGLLARRLTIRKS*SKAIFF Trigger: GAAAAAGATGGCCTTTGACAAACTCTTTCTGATAGT...CAACCTCCGGGCGAGCAGGCCTGCTTGGCTCAGGTCTGCGCTGGACGGTTTGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | CTGGGGTTCTGGCTGGCAAGAATGCCGGCTTCACGCTaGGGCTTCCTTTATCATTCTAGCAACAGGGAATTC | + |
|
Preference number: 3 (lower is better) Translates to: LGFWLARMPASR*GFLYHSSNREF Trigger: GAATTCCCTGTTGCTAGAATGATAAAGGAAGCCGCAGCGTGAAGCCGGCATTCTTGCCAGCCAGAACCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | TACCTCCCATGCTCTTGGTTGTGGTTCTCTGTGCGATaGTGGCAGATCACAAACCCAGCCAGGGTAAGGCTT | + |
|
Preference number: 3 (lower is better) Translates to: YLPCSWLWFSVR*WQITNPARVRL Trigger: AAGCCTTACCCTGGCTGGGTTTGTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | GTGTACGCATCCCGCACGCTGGCACACAGTGCAGTGTaGTCAATCAGACTAGCACATCTAATTCTTCCACTG | + |
|
Preference number: 3 (lower is better) Translates to: VYASRTLAHSAV*SIRLAHLILPL Trigger: CAGTGGAAGAATTAGATGTGCTAGTCTGATTGAGCACACTGCACTGTGTGCCAGCGTGCGGGATGCGTACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | AAAAATGTGTGTGCAAGCAAACACAGTATTCAGTGCTaGACAAGGCCGCCTGGAGGACCCAGCCGCACTGTA | + |
|
Preference number: 3 (lower is better) Translates to: KNVCASKHSIQC*TRPPGGPSRTV Trigger: TACAGTGCGGCTGGGTCCTCCAGGCGGCCTTGTGCAGCACTGAATACTGTGTTTGCTTGCACACACATTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CCA 72 bp | CTGTATGCCTTGTCTCTGAACCCAAGGCTGCAGCCGTaGCATGTCTTAATTCCAACACAATCTGGCGTAGGC | + |
|
Preference number: 3 (lower is better) Translates to: LYALSLNPRLQP*HVLIPTQSGVG Trigger: GCCTACGCCAGATTGTGTTGGAATTAAGACATGCCACGGCTGCAGCCTTGGGTTCAGAGACAAGGCATACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CAA 90 bp | CAAGACCGCCACTGCTCCCATGCACAGTGTACGCATCCCGCACGCTGGCACACAGTTAATCCACAGTCTTaGCTTTATCGTATGCAAAGT | + |
|
Preference number: 3 (lower is better) Translates to: QDRHCSHAQCTHPARWHTVNPQS*LYRMQS Trigger: ACTTTGCATACGATAAAGCAAAGACTGTGGATTAAC...TGTGTGCCAGCGTGCGGGATGCGTACACTGTGCATGGGAGCAGTGGCGGTCTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CAA 90 bp | GTGCTCCTGGCTCTACCTCCCATGCTCTTGGTTGTGGTTCTCTGTGCGATGCTGTCTGATTTTACTTCCTaGTGTGAACTGCACAGACAG | + |
|
Preference number: 3 (lower is better) Translates to: VLLALPPMLLVVVLCAMLSDFTS*CELHRQ Trigger: CTGTCTGTGCAGTTCACACAAGGAAGTAAAATCAGA...CAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR TCA 72 bp | CTCATCATAATCGCAGGCAAACAAACGACAATCCCCTaGAGTGTGTGCTGGGCGGGTCACCTTTGTCACCTT | + |
|
Preference number: 3 (lower is better) Translates to: LIIIAGKQTTIP*SVCWAGHLCHL Trigger: AAGGTGACAAAGGTGACCCGCCCAGCACACACTTCAGGGGATTGTCGTTTGTTTGCCTGCGATTATGATGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CAA 90 bp | TCCCATGCTACACCTCACCTCATGGAGAACTTAACTAGGTTTTTCCTGCTATGTCCACTGTCATACCACTaGATGCCTGGCGGGACATGG | + |
|
Preference number: 3 (lower is better) Translates to: SHATPHLMENLTRFFLLCPLSYH*MPGGTW Trigger: CCATGTCCCGCCAGGCATCAAGTGGTATGACAGTGG...ACATAGCAGGAAAAACCTAGTTAAGTTCTCCATGAGGTGAGGTGTAGCATGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CAA 90 bp | GCTGCCCAAGCAAACATGTACATAATAACACAGCAGCTAGCCTTGTCTGAAACTGCCGCACTGTATGCCTaGTCTCTGAACCCAAGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: AAQANMYIITQQLALSETAALYA*SLNPRL Trigger: CAGCCTTGGGTTCAGAGACAAGGCATACAGTGCGGC...AGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTACATGTTTGCTTGGGCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CAA 90 bp | GCTGCCCAAGCAAACATGTACATAATAACACAGCAGCTAGCCTTGTCTGAAACTCTACCTCCCATGCTCTaGGTTGTGGTTCTCTGTGCG | + |
|
Preference number: 3 (lower is better) Translates to: AAQANMYIITQQLALSETLPPML*VVVLCA Trigger: CGCACAGAGAACCACAACCAAGAGCATGGGAGGTAG...AGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTACATGTTTGCTTGGGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | TCCACTGCCCTCCCGAGGAACTCAAATCATCATTGGTaGAATTACTACAGAAAATGTGTTGGCAGCTGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: STALPRNSNHHW*NYYRKCVGSWQ Trigger: CTGCCAGCTGCCAACACATTTTCTGTAGTAATTGCACCAATGATGATTTGAGTTCCTCGGGAGGGCAGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CAA 90 bp | ACACAGTGCAGTGTGCTCAATCAGACTAGCACATCTAATTCTTCCACTGCCCTCACTACAGAAAATGTGTaGGCAGCTGGCAGCTGCTTT | + |
|
Preference number: 3 (lower is better) Translates to: TQCSVLNQTSTSNSSTALTTENV*AAGSCF Trigger: AAAGCAGCTGCCAGCTGCCAACACATTTTCTGTAGT...GAGGGCAGTGGAAGAATTAGATGTGCTAGTCTGATTGAGCACACTGCACTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | TACTGTAACCGGAAGGGCATGTTAATCCACAGTCTTTaGTTTATCGTATGCAAAGTGAGCTACTGCCCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: YCNRKGMLIHSL*FIVCKVSYCPE Trigger: CTCAGGGCAGTAGCTCACTTTGCATACGATAAAGCAAAGACTGTGGATTAACATGCCCTTCCGGTTACAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CCA 72 bp | CCTTCTAAAGGCGAAATCCCCATGACAGAAGCCGCATaGCTCAGAAGTGGGCTTCACTTACAATATTTACTT | + |
|
Preference number: 3 (lower is better) Translates to: PSKGEIPMTEAA*LRSGLHLQYLL Trigger: AAGTAAATATTGTAAGTGAAGCCCACTTCTGAGCCATGCGGCTTCTGTCATGGGGATTTCGCCTTTAGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR-3UTR CAA 90 bp | TCCCATGCTACACCTCACCTCATGGAGAACTTAACTAGGTTTTTCCTGCTATGTCCGCTCACTGCAATCTaGCAATCATCTCATGATTAT | + |
|
Preference number: 3 (lower is better) Translates to: SHATPHLMENLTRFFLLCPLTAI*QSSHDY Trigger: ATAATCATGAGATGATTGCAAGATTGCAGTGAGCGG...ACATAGCAGGAAAAACCTAGTTAAGTTCTCCATGAGGTGAGGTGTAGCATGGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR GCA 72 bp | TACATAATAACACAGCAGCTAGCCTTGTCTGAAACTTaGATCTGCCCTCATCATAATCGCAGGCAAACAAAC | + |
|
Preference number: 3 (lower is better) Translates to: YIITQQLALSET*ICPHHNRRQTN Trigger: GTTTGTTTGCCTGCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CAA 72 bp | CAAGGCCGCCTGGAGGACCCAGCCGCACTGTATGCCTaGTCTCTGAACCCAAGGCTGCAGCCGTGGCATGTC | + |
|
Preference number: 4 (lower is better) Translates to: QGRLEDPAALYA*SLNPRLQPWHV Trigger: GACATGCCACGGCTGCAGCCTTGGGTTCAGAGACAAGGCATACAGTGCGGCTGGGTCCTCCAGGCGGCCTTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR CCA 90 bp | GCCACCGCCGCAGCTGTGCACGGTCCTGGGGTTCTGGCTGGCAAGAATGCCGGCGACCCAGGTTGGGTCTaGTGTGCTGTTGTTATCCTC | + |
|
Preference number: 4 (lower is better) Translates to: ATAAAVHGPGVLAGKNAGDPGWV*CAVVIL Trigger: GAGGATAACAACAGCACACCAGACCCAACCTGGGTC...GCCGGCATTCTTGCCAGCCAGAACCCCAGGACCGTGCACAGCTGCGGCGGTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CAA 72 bp | GCAGACCTGAGCCAAGCAGGCCTGCTCGCCCGGAGGTaGGCTCCCATGCTACACCTCACCTCATGGAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: ADLSQAGLLARR*APMLHLTSWRT Trigger: AGTTCTCCATGAGGTGAGGTGTAGCATGGGAGCCAACCTCCGGGCGAGCAGGCCTGCTTGGCTCAGGTCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CAA 72 bp | CGCAGGCCTGTGCTCCTGGCTCTACCTCCCATGCTCTaGGTTGTGGTTCTCTGTGCGATGCTGGCAGATCAC | + |
|
Preference number: 4 (lower is better) Translates to: RRPVLLALPPML*VVVLCAMLADH Trigger: GTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCACAGGCCTGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR GCA 90 bp | CAAGACCGCCACTGCTCCCATGCACAGTGTACGCATCCCGCACGCTGGCACACAAGGTTGGGTCTGGTGTaGTGTTGTTATCCTCGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: QDRHCSHAQCTHPARWHTRLGLV*CCYPRC Trigger: ACAACGAGGATAACAACAGCACACCAGACCCAACCT...TGTGTGCCAGCGTGCGGGATGCGTACACTGTGCATGGGAGCAGTGGCGGTCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CAA 72 bp | GGCCTGTGCTCCTGGCTCTACCTCCCATGCTCTTGGTaGTGGTTCTCTGTGCGATGCTGGCAGATCACAAAC | + |
|
Preference number: 4 (lower is better) Translates to: GLCSWLYLPCSW*WFSVRCWQITN Trigger: GTTTGTGATCTGCCAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCACAGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR GCA 90 bp | GCCTTGTCTGAAACTTGCATCTGCCCTCATCATAATCGCAGGCAAACAAACGACTTAAACCTCTTCAGGTaGAGAGCCAGGATCAGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: ALSETCICPHHNRRQTNDLNLFR*RARIRG Trigger: GCCCCTGATCCTGGCTCTGCACCTGAAGAGGTTTAA...GTCGTTTGTTTGCCTGCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR GCA 90 bp | GCTGCCCAAGCAAACATGTACATAATAACACAGCAGCTAGCCTTGTCTGAAACTGCTGTGGAAGAGGTCTaGCAGGCAGGTGAGAAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: AAQANMYIITQQLALSETAVEEV*QAGEKV Trigger: AACCTTCTCACCTGCCTGGCAGACCTCTTCCACAGC...AGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTACATGTTTGCTTGGGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR CCA 90 bp | ACACAGTGCAGTGTGCTCAATCAGACTAGCACATCTAATTCTTCCACTGCCCTCCAGACTCCGAGTTCTTaGAGATGTCAGATGTCAATC | + |
|
Preference number: 4 (lower is better) Translates to: TQCSVLNQTSTSNSSTALQTPSS*RCQMSI Trigger: GATTGACATCTGACATCTCCAAGAACTCGGAGTCTG...GAGGGCAGTGGAAGAATTAGATGTGCTAGTCTGATTGAGCACACTGCACTGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR GCA 90 bp | GCCTTGTCTGAAACTTGCATCTGCCCTCATCATAATCGCAGGCAAACAAACGACCGTAATCGGCCATTTTaGTTCTCCTGTTTTCTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: ALSETCICPHHNRRQTNDRNRPF*FSCFLS Trigger: AGAAAGAAAACAGGAGAAGCAAAATGGCCGATTACG...GTCGTTTGTTTGCCTGCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| 3UTR CAA 72 bp | CAAGCAAACATGTACATAATAACACAGCAGCTAGCCTaGTCTGAAACTTGCATCTGCCCTCATCATAATCGC | + |
|
Preference number: 4 (lower is better) Translates to: QANMYIITQQLA*SETCICPHHNR Trigger: GCGATTATGATGAGGGCAGATGCAAGTTTCAGACAAGGCTAGCTGCTGTGTTATTATGTACATGTTTGCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR CAA 90 bp | TGCAAACCGTCCAGCGCAGACCTGAGCCAAGCAGGCCTGCTCGCCCGGAGGTTGGGGTCTGGTGTGCTGTaGTTATCCTCGTTGTCCACG | + |
|
Preference number: 5 (lower is better) Translates to: CKPSSADLSQAGLLARRLGSGVL*LSSLST Trigger: CGTGGACAACGAGGATAACAACAGCACACCAGACCC...CAACCTCCGGGCGAGCAGGCCTGCTTGGCTCAGGTCTGCGCTGGACGGTTTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR CAA 90 bp | GTGCTCCTGGCTCTACCTCCCATGCTCTTGGTTGTGGTTCTCTGTGCGATGCTGCTTGTGATGAACTTCTaGGGCGGGATCACGCCGACC | + |
|
Preference number: 5 (lower is better) Translates to: VLLALPPMLLVVVLCAMLLVMNF*GGITPT Trigger: GGTCGGCGTGATCCCGCCCAAGAAGTTCATCACAAG...CAGCATCGCACAGAGAACCACAACCAAGAGCATGGGAGGTAGAGCCAGGAGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||
| CDS-3UTR CAA 90 bp | CAAGACCGCCACTGCTCCCATGCACAGTGTACGCATCCCGCACGCTGGCACACACCAGACTCCGAGTTCTaGGAGATGTCAGATGTCAAT | + |
|
Preference number: 5 (lower is better) Translates to: QDRHCSHAQCTHPARWHTPDSEF*EMSDVN Trigger: ATTGACATCTGACATCTCCAAGAACTCGGAGTCTGG...TGTGTGCCAGCGTGCGGGATGCGTACACTGTGCATGGGAGCAGTGGCGGTCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085614.6 |
||