Pregenerated sensors for USP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028560Ensembl transcript IDs: ENSMUST00000030289.9, ENSMUST00000091358.11, ENSMUST00000125104.2
Found 131 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | ACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTTaGTTCCCAGCTCATCCATCACTAGTCTCTACTAAGGAAAATGAT | + |
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Preference number: 2 (lower is better) Translates to: TVSSFHFGSFRIYTS*FPAHPSLVSTKEND Trigger: ATCATTTTCCTTAGTAGAGACTAGTGATGGATGAGCTGGGAACAAACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGCCGTCCCCCTTGCTTaGTCCTCGGTCAGTGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILAVPLA*SSVSGS Trigger: AGAGCCACTGACCGAGGAGCAAGCAAGGGGGACGGC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGCCGTCCCCCTTGCTTaGTCCTCGGTCAGTGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSAVPLA*SSVSGS Trigger: AGAGCCACTGACCGAGGAGCAAGCAAGGGGGACGGC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCTTCTCGCAGCTTACTaGGGAGGACTGTGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSLLAAY*GGLCSR Trigger: CCTGCTGCACAGTCCTCCCCAGTAAGCTGCGAGAAG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCTTCTCGCAGCTTACTaGGGAGGACTGTGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILLLAAY*GGLCSR Trigger: CCTGCTGCACAGTCCTCCCCAGTAAGCTGCGAGAAG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTACTGGGGAGGACTGTaGAGCAGGAACAACTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILYWGGL*SRNNLV Trigger: GACCAAGTTGTTCCTGCTGCACAGTCCTCCCCAGTA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTTACTGGGGAGGACTGTaGAGCAGGAACAACTTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSYWGGL*SRNNLV Trigger: GACCAAGTTGTTCCTGCTGCACAGTCCTCCCCAGTA...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGTTCAGCAGTCGCCTTaGCTGTGTAGCAAGTTCATC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSVQQSP*LCSKFI Trigger: GATGAACTTGCTACACAGCCAAGGCGACTGCTGAAC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCTGGTTTTCTTCCAATaGCTGGGATTCCCTGGACAG | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILLVFFQ*LGFPGQ Trigger: CTGTCCAGGGAATCCCAGCCATTGGAAGAAAACCAG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCTGGTTTTCTTCCAATaGCTGGGATTCCCTGGACAG | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSLVFFQ*LGFPGQ Trigger: CTGTCCAGGGAATCCCAGCCATTGGAAGAAAACCAG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCTTTGTTTCCGGACTTaGCTTCACTGCTGTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSLCFRT*LHCCPQ Trigger: CTGTGGACAGCAGTGAAGCCAAGTCCGGAAACAAAG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCGCCTGTTTGGTCACTaGATTCCTTGTTCCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSRLFGH*IPCSCQ Trigger: CTGACAGGAACAAGGAATCCAGTGACCAAACAGGCG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGGATGGACTGCCTCTTaGAAGCCCATTACTTTCACT | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILGWTAS*KPITFT Trigger: AGTGAAAGTAATGGGCTTTCAAGAGGCAGTCCATCC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCAGGAGACTTCGCTCTaGTTCCGTATAATGATGGCA | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILQETSL*FRIMMA Trigger: TGCCATCATTATACGGAAGCAGAGCGAAGTCTCCTG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCATTCGTCGGCTTTGTaGTCCATTCTTCTAGTGACA | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSHSSAL*SILLVT Trigger: TGTCACTAGAAGAATGGAGCACAAAGCCGACGAATG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCATTCGTCGGCTTTGTaGTCCATTCTTCTAGTGACA | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILHSSAL*SILLVT Trigger: TGTCACTAGAAGAATGGAGCACAAAGCCGACGAATG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGCAGCAGGAACAACTTaGTCAATCTCAGATCCTCTA | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILAAGTT*SISDPL Trigger: TAGAGGATCTGAGATTGACCAAGTTGTTCCTGCTGC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGCAGCAGGAACAACTTaGTCAATCTCAGATCCTCTA | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSAAGTT*SISDPL Trigger: TAGAGGATCTGAGATTGACCAAGTTGTTCCTGCTGC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGATCTGGTTTGTCTCTaGTTTTCTTCCAATGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILDLVCL*FSSNGW Trigger: CCAGCCATTGGAAGAAAACCAGAGACAAACCAGATC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCCTAGTTCACACATCTaGTCAACCACAAAATTCCCC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSPSSHI*STTKFP Trigger: GGGGAATTTTGTGGTTGACCAGATGTGTGAACTAGG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCTTCCCTTATCCTTCTaGTTAGAGTCATCCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSLPLSF*LESSFR Trigger: TCTGAAGGATGACTCTAATCAGAAGGATAAGGGAAG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCTTCCCTTATCCTTCTaGTTAGAGTCATCCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILLPLSF*LESSFR Trigger: TCTGAAGGATGACTCTAATCAGAAGGATAAGGGAAG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCCTGTTTCCTCTTTCTaGAGAGATTGTTCTTCAACC | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILPVSSF*RDCSST Trigger: GGTTGAAGAACAATCTCTTCAGAAAGAGGAAACAGG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGCAAAGCACTTCAGATaGATAGTGATAACTTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILAKHFR*IVITSG Trigger: GCCTGAAGTTATCACTATTCATCTGAAGTGCTTTGC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTCAATAAAGGAGTGTTaGTCTTGGAAAGTCCACCAC | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILSIKEC*SWKVHH Trigger: GTGGTGGACTTTCCAAGATCAACACTCCTTTATTGA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTTCAATAAAGGAGTGTTaGTCTTGGAAAGTCCACCAC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSSIKEC*SWKVHH Trigger: GTGGTGGACTTTCCAAGATCAACACTCCTTTATTGA...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTTTTCTTGGATGGACTaGCTCTTGAAAGCCCATTAC | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILFSWMD*LLKAHY Trigger: GTAATGGGCTTTCAAGAGGCAGTCCATCCAAGAAAA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTTTTTCTTGGATGGACTaGCTCTTGAAAGCCCATTAC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSFSWMD*LLKAHY Trigger: GTAATGGGCTTTCAAGAGGCAGTCCATCCAAGAAAA...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCCAAAGACTCTTCTTTaGAGCTTCCCTTATCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILPKTLL*SFPYPS Trigger: AGAAGGATAAGGGAAGCTGCAAAGAAGAGTCTTTGG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCCAAAGACTCTTCTTTaGAGCTTCCCTTATCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSPKTLL*SFPYPS Trigger: AGAAGGATAAGGGAAGCTGCAAAGAAGAGTCTTTGG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGAAAGAATGCTGGGTTaGTTAGTGGATGGCTTTAAC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSERMLG*LVDGFN Trigger: GTTAAAGCCATCCACTAAGCAACCCAGCATTCTTTC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGAAAGAATGCTGGGTTaGTTAGTGGATGGCTTTAAC | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILERMLG*LVDGFN Trigger: GTTAAAGCCATCCACTAAGCAACCCAGCATTCTTTC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCAGTGACTTTAACAGATaGGGTATAGTGCCCACTACT | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILSDFNR*GIVPTT Trigger: AGTAGTGGGCACTATACCGCATCTGTTAAAGTCACT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTAGTGACTTTAACAGATaGGGTATAGTGCCCACTACT | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSSDFNR*GIVPTT Trigger: AGTAGTGGGCACTATACCGCATCTGTTAAAGTCACT...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGCTCATAATCTGCTTTaGTCTTTTGTCCACCGAGAA | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSAHNLL*SFVHRE Trigger: TTCTCGGTGGACAAAAGAGCAAAGCAGATTATGAGC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGCTCATAATCTGCTTTaGTCTTTTGTCCACCGAGAA | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILAHNLL*SFVHRE Trigger: TTCTCGGTGGACAAAAGAGCAAAGCAGATTATGAGC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGTACAGCTCATAATCTaGTTTGCTCTTTTGTCCACC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSVQLII*FALLST Trigger: GGTGGACAAAAGAGCAAAGCAGATTATGAGCTGTAC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCAAGACTACAGAACTTaGAAAGAATGCTGGGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSQDYRT*KECWVA Trigger: AGCAACCCAGCATTCTTTCCAAGTTCTGTAGTCTTG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGTTCAAAACTTTACTTaGCTGGGCATTTCCACCAAC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSVQNFT*LGISTN Trigger: GTTGGTGGAAATGCCCAGCCAAGTAAAGTTTTGAAC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCATGTTAACGCCTGTTTaGTCACTGGATTCCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILMLTPV*SLDSLF Trigger: GAACAAGGAATCCAGTGACCAAACAGGCGTTAACAT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTATGTTAACGCCTGTTTaGTCACTGGATTCCTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSMLTPV*SLDSLF Trigger: GAACAAGGAATCCAGTGACCAAACAGGCGTTAACAT...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTAGTTGGCATGTTTCTTaGATGTTTCCCAGAATACAC | + |
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Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSSWHVS*MFPRIH Trigger: GTGTATTCTGGGAAACATTCAAGAAACATGCCAACT...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR TCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCAGTTGGCATGTTTCTTaGATGTTTCCCAGAATACAC | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILSWHVS*MFPRIH Trigger: GTGTATTCTGGGAAACATTCAAGAAACATGCCAACT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGAAAGCTCATCTTCTTaGACTGGAACACTAATATCC | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSESSSS*TGTLIS Trigger: GGATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCACAGTCTGTTTTTCTTaGATGGACTGCCTCTTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILTVCFS*MDCLLK Trigger: TTTCAAGAGGCAGTCCATCCAAGAAAAACAGACTGT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTGTCCTTTGGAGCGCTaGTTAGTTGTTATTTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILCPLER*LVVIFP Trigger: TGGAAAAATAACAACTAACCAGCGCTCCAAAGGACA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCTCATCTTCTTGCACTaGAACACTAATATCCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSLIFLH*NTNILE Trigger: TTCCAGGATATTAGTGTTCCAGTGCAAGAAGATGAG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCTCATCTTCTTGCACTaGAACACTAATATCCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILLIFLH*NTNILE Trigger: TTCCAGGATATTAGTGTTCCAGTGCAAGAAGATGAG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTTTCTGTTTTTGGCTCTaGAGAAATTTCAGAGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSFCFWL*RNFRAL Trigger: GAGAGCTCTGAAATTTCTCCAGAGCCAAAAACAGAA...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTAAAACTTTACTTGGCTaGGCATTTCCACCAACTCTA | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSKTLLG*AFPPTL Trigger: TAGAGTTGGTGGAAATGCCCAGCCAAGTAAAGTTTT...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCAAAACTTTACTTGGCTaGGCATTTCCACCAACTCTA | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILKTLLG*AFPPTL Trigger: TAGAGTTGGTGGAAATGCCCAGCCAAGTAAAGTTTT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR TCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCAAGAGAAAACTAGCCTaGAGCTGTTCAACTGAAATT | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILKRKLA*SCSTEI Trigger: AATTTCAGTTGAACAGCTTCAGGCTAGTTTTCTCTT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR TCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTAAGAGAAAACTAGCCTaGAGCTGTTCAACTGAAATT | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSKRKLA*SCSTEI Trigger: AATTTCAGTTGAACAGCTTCAGGCTAGTTTTCTCTT...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTCAGATAACAAGTGTTaGCAAGGTTATTCAATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILSDNKC*QGYSIP Trigger: TGGGATTGAATAACCTTGGCAACACTTGTTATCTGA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCATAGTAATGCCACTGTaGATCACAACGGCAAATAAT | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILIVMPL*ITTANN Trigger: ATTATTTGCCGTTGTGATGCACAGTGGCATTACTAT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTATAGTAATGCCACTGTaGATCACAACGGCAAATAAT | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSIVMPL*ITTANN Trigger: ATTATTTGCCGTTGTGATGCACAGTGGCATTACTAT...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR GCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTTATAAGCTCATAACTTaGCAAAGACTCTTCTTTGCA | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSYKLIT*QRLFFA Trigger: TGCAAAGAAGAGTCTTTGGCAAGTTATGAGCTTATA...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR GCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCTTATCAGGATTAGATaGTTTGTTGTACAGCTCATA | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILLIRIR*FVVQLI Trigger: TATGAGCTGTACAACAAAGCATCTAATCCTGATAAG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGGAACACTAATATCCTaGAAATCTTCTCTTCTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: NFTNICPGLFNIYRGNILGTLIS*KSSLLS Trigger: AGAAAGAAGAGAAGATTTCCAGGATATTAGTGTTCC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CCA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGGAACACTAATATCCTaGAAATCTTCTCTTCTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSGTLIS*KSSLLS Trigger: AGAAAGAAGAGAAGATTTCCAGGATATTAGTGTTCC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 90 bp | GGTGTGACGCTACTTCCTGGAGATTCGGGTCCACCATTAGCTGTGTaGTCACTTCCGTACTTCTCCAAGTCCTCTTCAACATCACCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GVTLLPGDSGPPLAV*SLPYFSKSSSTSPS Trigger: GGAGGGTGATGTTGAAGAGGACTTGGAGAAGTACGGAAGTGACCACACAGCTAATGGTGGACCCGAATCTCCAGGAAGTAGCGTCACACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 90 bp | GCTTGCTCCTCGGTCAGTGGCTCTGGCTTACCTAGTTCACACATCTaGTCAACCACAAAATTCCCCTCATCGAGCTCTAGACTGTTAAGG | + |
|
Preference number: 5 (lower is better) Translates to: ACSSVSGSGLPSSHI*STTKFPSSSSRLLR Trigger: CCTTAACAGTCTAGAGCTCGATGAGGGGAATTTTGTGGTTGACCAGATGTGTGAACTAGGTAAGCCAGAGCCACTGACCGAGGAGCAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCAGCCGTCCCCCTTGCTaGCTCCTCGGTCAGTGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILSRPPC*LLGQWL Trigger: GAGCCACTGACCGAGGAGCAAGCAAGGGGGACGGCT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTTCCCAGCCGTCCCCCTaGCTTGCTCCTCGGTCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSSQPSP*LAPRSV Trigger: CACTGACCGAGGAGCAAGCAAGGGGGACGGCTGGGA...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTCCCAGCCGTCCCCCTaGCTTGCTCCTCGGTCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILSQPSP*LAPRSV Trigger: CACTGACCGAGGAGCAAGCAAGGGGGACGGCTGGGA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS TCA 90 bp | TTTGTTCAAAACTTTACTTGGCTGGGCATTTCCACCAACTCTAATTaGTACTTCATCGTCGTAGTTCCCAGCCGTCCCCCTTGCTTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: FVQNFTWLGISTNSN*YFIVVVPSRPPCLL Trigger: GAGCAAGCAAGGGGGACGGCTGGGAACTACGACGATGAAGTATCAATTAGAGTTGGTGGAAATGCCCAGCCAAGTAAAGTTTTGAACAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 90 bp | TCTAGTGTGTCTCCGATAGCTTTTCTCTTGGATCTGGTTTGTCTCTaGTTTTCTTCCAATGGCTGGGATTCCCTGGACAGTTTAACCTTT | + |
|
Preference number: 5 (lower is better) Translates to: SSVSPIAFLLDLVCL*FSSNGWDSLDSLTF Trigger: AAAGGTTAAACTGTCCAGGGAATCCCAGCCATTGGAAGAAAACCAGAGACAAACCAGATCCAAGAGAAAAGCTATCGGAGACACACTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS GCA 90 bp | TCTATTGTCGGTGAATGGTGTCCCAACCACCTTATCAGGATTAGATaGTTTGTTGTACAGCTCATAATCTGCTTTGCTCTTTTGTCCACC | + |
|
Preference number: 5 (lower is better) Translates to: SIVGEWCPNHLIRIR*FVVQLIICFALLST Trigger: GGTGGACAAAAGAGCAAAGCAGATTATGAGCTGTACAACAAAGCATCTAATCCTGATAAGGTGGTTGGGACACCATTCACCGACAATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS TCA 90 bp | ATACTGTCAATCTCTGTGCTGGTAATTCCACCTGTTTCCTCTTTCTaGAGAGATTGTTCTTCAACCTTGCCGGATAATTCAGCCAGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: ILSISVLVIPPVSSF*RDCSSTLPDNSARF Trigger: AAACCTGGCTGAATTATCCGGCAAGGTTGAAGAACAATCTCTTCAGAAAGAGGAAACAGGTGGAATTACCAGCACAGAGATTGACAGTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS GCA 90 bp | GGAGAAATTTCAGAGCTCTCCTCGACCTTGGAAAGCTCATCTTCTTaGACTGGAACACTAATATCCTGGAAATCTTCTCTTCTTTCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: GEISELSSTLESSSS*TGTLISWKSSLLSV Trigger: AACAGAAAGAAGAGAAGATTTCCAGGATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTCTGAAATTTCTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGAGCTCTCCTCGACCTaGGAAAGCTCATCTTCTTGC | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSELSST*ESSSSC Trigger: GCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGAGCTCTCCTCGACCTaGGAAAGCTCATCTTCTTGC | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILELSST*ESSSSC Trigger: GCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 90 bp | TCTTCAACATCACCCTCCTTTTCCTTAGGTTGTCCTTTGGAGCGCTaGTTAGTTGTTATTTTTCCAAGACTACAGAACTTGGAAAGAATG | + |
|
Preference number: 5 (lower is better) Translates to: SSTSPSFSLGCPLER*LVVIFPRLQNLERM Trigger: CATTCTTTCCAAGTTCTGTAGTCTTGGAAAAATAACAACTAACCAGCGCTCCAAAGGACAACCTAAGGAAAAGGAGGGTGATGTTGAAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTGGTCACTGGATTCCTaGTTCCTGTCAGATTCGTGG | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILWSLDS*FLSDSW Trigger: CCACGAATCTGACAGGAACAAGGAATCCAGTGACCA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS GCA 90 bp | AACCACCTTATCAGGATTAGATGCTTTGTTGTACAGCTCATAATCTaGTTTGCTCTTTTGTCCACCGAGAAGTCCAATACCTTCTACATT | + |
|
Preference number: 5 (lower is better) Translates to: NHLIRIRCFVVQLII*FALLSTEKSNTFYI Trigger: AATGTAGAAGGTATTGGACTTCTCGGTGGACAAAAGAGCAAAGCAGATTATGAGCTGTACAACAAAGCATCTAATCCTGATAAGGTGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS CCA 90 bp | TCGACCTTGGAAAGCTCATCTTCTTGCACTGGAACACTAATATCCTaGAAATCTTCTCTTCTTTCTGTTAAGCTTTCACATTCCAAACAC | + |
|
Preference number: 5 (lower is better) Translates to: STLESSSSCTGTLIS*KSSLLSVKLSHSKH Trigger: GTGTTTGGAATGTGAAAGCTTAACAGAAAGAAGAGAAGATTTCCAGGATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCCAAGGTCGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTGGATGGACTGCCTCTaGAAAGCCCATTACTTTCAC | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILWMDCL*KAHYFH Trigger: GTGAAAGTAATGGGCTTTCAAGAGGCAGTCCATCCA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGCCAAAGACTCTTCTTaGCAGCTTCCCTTATCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSAKDSS*QLPLSF Trigger: GAAGGATAAGGGAAGCTGCAAAGAAGAGTCTTTGGC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGCCAAAGACTCTTCTTaGCAGCTTCCCTTATCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILAKDSS*QLPLSF Trigger: GAAGGATAAGGGAAGCTGCAAAGAAGAGTCTTTGGC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCCTTCATACATAGGGTaGAGTTCCCTGAGTGTGTTC | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSPSYIG*SSLSVF Trigger: GAACACACTCAGGGAACTCAACCCTATGTATGAAGG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCCGATAGCTTTTCTCTaGGATCTGGTTTGTCTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILPIAFL*DLVCLW Trigger: CCAGAGACAAACCAGATCCAAGAGAAAAGCTATCGG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCCGATAGCTTTTCTCTaGGATCTGGTTTGTCTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSPIAFL*DLVCLW Trigger: CCAGAGACAAACCAGATCCAAGAGAAAAGCTATCGG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCCAAGACTACAGAACTaGGAAAGAATGCTGGGTTGC | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSPRLQN*ERMLGC Trigger: GCAACCCAGCATTCTTTCCAAGTTCTGTAGTCTTGG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCCCAAGACTACAGAACTaGGAAAGAATGCTGGGTTGC | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILPRLQN*ERMLGC Trigger: GCAACCCAGCATTCTTTCCAAGTTCTGTAGTCTTGG...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCATCTGTTCAGCACCTTaGTTTCCGGACTTGGCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILICSAP*FPDLAS Trigger: TGAAGCCAAGTCCGGAAACAAAGGTGCTGAACAGAT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTATCTGTTCAGCACCTTaGTTTCCGGACTTGGCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSICSAP*FPDLAS Trigger: TGAAGCCAAGTCCGGAAACAAAGGTGCTGAACAGAT...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTGTCATTCGTCGGCTTaGTGCTCCATTCTTCTAGTG | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILCHSSA*CSILLV Trigger: CACTAGAAGAATGGAGCACAAAGCCGACGAATGACA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGACAGTCTGTTTTTCTaGGATGGACTGCCTCTTGAA | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILDSLFF*DGLPLE Trigger: TTCAAGAGGCAGTCCATCCAAGAAAAACAGACTGTC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCTCTTTCTGAAGAGATaGTTCTTCAACCTTGCCGGA | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSLFLKR*FFNLAG Trigger: TCCGGCAAGGTTGAAGAACAATCTCTTCAGAAAGAG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCATCTGCTTTGCTCTTTaGTCCACCGAGAAGTCCAAT | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILICFAL*STEKSN Trigger: ATTGGACTTCTCGGTGGACAAAAGAGCAAAGCAGAT...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTCATGTTAACGCCTGTTaGGTCACTGGATTCCTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSHVNAC*VTGFLV Trigger: AACAAGGAATCCAGTGACCAAACAGGCGTTAACATG...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTTCTCTTGGATCTGGTTaGTCTCTGGTTTTCTTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSSLGSG*SLVFFQ Trigger: TTGGAAGAAAACCAGAGACAAACCAGATCCAAGAGA...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGGAAAGCTCATCTTCTaGCACTGGAACACTAATATC | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSGKLIF*HWNTNI Trigger: GATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCGTCAATAAAGGAGTGTaGATCTTGGAAAGTCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILVNKGV*ILESPP Trigger: TGGTGGACTTTCCAAGATCAACACTCCTTTATTGAC...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | CAAGTGTTAACTGTGTCAAGCTTCCATTTTGGATCATTTAGAATCTACACAAGTGTCAATAAAGGAGTGTaGATCTTGGAAAGTCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: QVLTVSSFHFGSFRIYTSVNKGV*ILESPP Trigger: TGGTGGACTTTCCAAGATCAACACTCCTTTATTGAC...ACTTGTGTAGATTCTAAATGATCCAAAATGGAAGCTTGACACAGTTAACACTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS-3UTR CAA 90 bp | AACTTTACCAACATCTGTCCAGGTCTGTTTAATATTTACAGGGGAAATATACTCTGTTCAAAACTTTACTaGGCTGGGCATTTCCACCAA | + |
|
Preference number: 5 (lower is better) Translates to: NFTNICPGLFNIYRGNILCSKLY*AGHFHQ Trigger: TTGGTGGAAATGCCCAGCCAAGTAAAGTTTTGAACA...GAGTATATTTCCCCTGTAAATATTAAACAGACCTGGACAGATGTTGGTAAAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS GCA 90 bp | AATAGTGATAACTTCAGGCATTTTATCAAACAGGAGACTTCGCTCTaGTTCCGTATAATGATGGCAATTTTCACAGAAGTATTTATCCTC | + |
|
Preference number: 5 (lower is better) Translates to: NSDNFRHFIKQETSL*FRIMMAIFTEVFIL Trigger: GAGGATAAATACTTCTGTGAAAATTGCCATCATTATACGGAAGCAGAGCGAAGTCTCCTGTTTGATAAAATGCCTGAAGTTATCACTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | TTGATACTTCATCGTCGTAGTTCCCAGCCGTCCCCCTaGCTTGCTCCTCGGTCAGTGGCTCTGGCTTACCTA | + |
|
Preference number: 6 (lower is better) Translates to: LILHRRSSQPSP*LAPRSVALAYL Trigger: TAGGTAAGCCAGAGCCACTGACCGAGGAGCAAGCAAGGGGGACGGCTGGGAACTACGACGATGAAGTATCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 72 bp | CTACTTCCTGGAGATTCGGGTCCACCATTAGCTGTGTaGTCACTTCCGTACTTCTCCAAGTCCTCTTCAACA | + |
|
Preference number: 6 (lower is better) Translates to: LLPGDSGPPLAV*SLPYFSKSSST Trigger: TGTTGAAGAGGACTTGGAGAAGTACGGAAGTGACCACACAGCTAATGGTGGACCCGAATCTCCAGGAAGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 72 bp | TCGGTCAGTGGCTCTGGCTTACCTAGTTCACACATCTaGTCAACCACAAAATTCCCCTCATCGAGCTCTAGA | + |
|
Preference number: 6 (lower is better) Translates to: SVSGSGLPSSHI*STTKFPSSSSR Trigger: TCTAGAGCTCGATGAGGGGAATTTTGTGGTTGACCAGATGTGTGAACTAGGTAAGCCAGAGCCACTGACCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS TCA 72 bp | AACTTTACTTGGCTGGGCATTTCCACCAACTCTAATTaGTACTTCATCGTCGTAGTTCCCAGCCGTCCCCCT | + |
|
Preference number: 6 (lower is better) Translates to: NFTWLGISTNSN*YFIVVVPSRPP Trigger: AGGGGGACGGCTGGGAACTACGACGATGAAGTATCAATTAGAGTTGGTGGAAATGCCCAGCCAAGTAAAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS CCA 72 bp | AGGGTTGAGTTCCCTGAGTGTGTTCAGCAGTCGCCTTaGCTGTGTAGCAAGTTCATCTGTATATTTCTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: RVEFPECVQQSP*LCSKFICIFLW Trigger: CCAGAGAAATATACAGATGAACTTGCTACACAGCCAAGGCGACTGCTGAACACACTCAGGGAACTCAACCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 ENSMUST00000125104.2 |
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| CDS CAA 72 bp | GGAGCAGCCTCTAGTGTGTCTCCGATAGCTTTTCTCTaGGATCTGGTTTGTCTCTGGTTTTCTTCCAATGGC | + |
|
Preference number: 6 (lower is better) Translates to: GAASSVSPIAFL*DLVCLWFSSNG Trigger: GCCATTGGAAGAAAACCAGAGACAAACCAGATCCAAGAGAAAAGCTATCGGAGACACACTAGAGGCTGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | TGTGAGGGCTTTGCACTCTCACTTTCAGAAACACACTaGGGGATGATCTTAGGAGCAGCCTCTAGTGTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: CEGFALSLSETH*GMILGAASSVS Trigger: AGACACACTAGAGGCTGCTCCTAAGATCATCCCCAAGTGTGTTTCTGAAAGTGAGAGTGCAAAGCCCTCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | TTCTCTACTAGCTCAAAGCCAATCTGTTCAGCACCTTaGTTTCCGGACTTGGCTTCACTGCTGTCCACAGGT | + |
|
Preference number: 6 (lower is better) Translates to: FSTSSKPICSAP*FPDLASLLSTG Trigger: ACCTGTGGACAGCAGTGAAGCCAAGTCCGGAAACAAAGGTGCTGAACAGATTGGCTTTGAGCTAGTAGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 90 bp | GATTTCTTCTGTGAGGGCTTTGCACTCTCACTTTCAGAAACACACTaGGGGATGATCTTAGGAGCAGCCTCTAGTGTGTCTCCGATAGCT | + |
|
Preference number: 6 (lower is better) Translates to: DFFCEGFALSLSETH*GMILGAASSVSPIA Trigger: AGCTATCGGAGACACACTAGAGGCTGCTCCTAAGATCATCCCCAAGTGTGTTTCTGAAAGTGAGAGTGCAAAGCCCTCACAGAAGAAATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS TCA 72 bp | CAGAGACAGTCTGTTTTTCTTGGATGGACTGCCTCTTaGAAGCCCATTACTTTCACTAGGTATGACGCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: QRQSVFLGWTAS*KPITFTRYDAR Trigger: CCTGGCGTCATACCTAGTGAAAGTAATGGGCTTTCAAGAGGCAGTCCATCCAAGAAAAACAGACTGTCTCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | CCGTTCATGTTAACGCCTGTTTGGTCACTGGATTCCTaGTTCCTGTCAGATTCGTGGGTCCCATTAGTAGTA | + |
|
Preference number: 6 (lower is better) Translates to: PFMLTPVWSLDS*FLSDSWVPLVV Trigger: TACTACTAATGGGACCCACGAATCTGACAGGAACAAGGAATCCAGTGACCAAACAGGCGTTAACATGAACGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS GCA 72 bp | TCAGAGCTCTCCTCGACCTTGGAAAGCTCATCTTCTTaGACTGGAACACTAATATCCTGGAAATCTTCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SELSSTLESSSS*TGTLISWKSSL Trigger: AAGAGAAGATTTCCAGGATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 72 bp | GCTCTCCTCGACCTTGGAAAGCTCATCTTCTTGCACTaGAACACTAATATCCTGGAAATCTTCTCTTCTTTC | + |
|
Preference number: 6 (lower is better) Translates to: ALLDLGKLIFLH*NTNILEIFSSF Trigger: GAAAGAAGAGAAGATTTCCAGGATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 72 bp | ATTTTGTTCTCAAGTCCGTTCATGTTAACGCCTGTTTaGTCACTGGATTCCTTGTTCCTGTCAGATTCGTGG | + |
|
Preference number: 6 (lower is better) Translates to: ILFSSPFMLTPV*SLDSLFLSDSW Trigger: CCACGAATCTGACAGGAACAAGGAATCCAGTGACCAAACAGGCGTTAACATGAACGGACTTGAGAACAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | TTCAGAGCTCTCCTCGACCTTGGAAAGCTCATCTTCTaGCACTGGAACACTAATATCCTGGAAATCTTCTCT | + |
|
Preference number: 6 (lower is better) Translates to: FRALLDLGKLIF*HWNTNILEIFS Trigger: AGAGAAGATTTCCAGGATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | TTTGGCTCTGGAGAAATTTCAGAGCTCTCCTCGACCTaGGAAAGCTCATCTTCTTGCACTGGAACACTAATA | + |
|
Preference number: 6 (lower is better) Translates to: FGSGEISELSST*ESSSSCTGTLI Trigger: TATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTCTGAAATTTCTCCAGAGCCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 90 bp | TCCAAGTCCTCTTCAACATCACCCTCCTTTTCCTTAGGTTGTCCTTaGGAGCGCTGGTTAGTTGTTATTTTTCCAAGACTACAGAACTTG | + |
|
Preference number: 6 (lower is better) Translates to: SKSSSTSPSFSLGCP*ERWLVVIFPRLQNL Trigger: CAAGTTCTGTAGTCTTGGAAAAATAACAACTAACCAGCGCTCCAAAGGACAACCTAAGGAAAAGGAGGGTGATGTTGAAGAGGACTTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 90 bp | AAGCAAACTGTGAAATTGCCCATCTCAAGGTCTTCATTTCTGTTTTaGGCTCTGGAGAAATTTCAGAGCTCTCCTCGACCTTGGAAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: KQTVKLPISRSSFLF*ALEKFQSSPRPWKA Trigger: AGCTTTCCAAGGTCGAGGAGAGCTCTGAAATTTCTCCAGAGCCAAAAACAGAAATGAAGACCTTGAGATGGGCAATTTCACAGTTTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 90 bp | TTCTCAAGTCCGTTCATGTTAACGCCTGTTTGGTCACTGGATTCCTaGTTCCTGTCAGATTCGTGGGTCCCATTAGTAGTATCATTAGTT | + |
|
Preference number: 6 (lower is better) Translates to: FSSPFMLTPVWSLDS*FLSDSWVPLVVSLV Trigger: AACTAATGATACTACTAATGGGACCCACGAATCTGACAGGAACAAGGAATCCAGTGACCAAACAGGCGTTAACATGAACGGACTTGAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 90 bp | TACATAGGAAATTTTGTTCTCAAGTCCGTTCATGTTAACGCCTGTTaGGTCACTGGATTCCTTGTTCCTGTCAGATTCGTGGGTCCCATT | + |
|
Preference number: 6 (lower is better) Translates to: YIGNFVLKSVHVNAC*VTGFLVPVRFVGPI Trigger: AATGGGACCCACGAATCTGACAGGAACAAGGAATCCAGTGACCAAACAGGCGTTAACATGAACGGACTTGAGAACAAAATTTCCTATGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS GCA 72 bp | GGTGAATGGTGTCCCAACCACCTTATCAGGATTAGATaGTTTGTTGTACAGCTCATAATCTGCTTTGCTCTT | + |
|
Preference number: 6 (lower is better) Translates to: GEWCPNHLIRIR*FVVQLIICFAL Trigger: AAGAGCAAAGCAGATTATGAGCTGTACAACAAAGCATCTAATCCTGATAAGGTGGTTGGGACACCATTCACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 72 bp | TCTCTTGGATCTGGTTTGTCTCTGGTTTTCTTCCAATaGCTGGGATTCCCTGGACAGTTTAACCTTTTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SLGSGLSLVFFQ*LGFPGQFNLFL Trigger: AAGAAAAAGGTTAAACTGTCCAGGGAATCCCAGCCATTGGAAGAAAACCAGAGACAAACCAGATCCAAGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CCA 72 bp | TCACCCTCCTTTTCCTTAGGTTGTCCTTTGGAGCGCTaGTTAGTTGTTATTTTTCCAAGACTACAGAACTTG | + |
|
Preference number: 6 (lower is better) Translates to: SPSFSLGCPLER*LVVIFPRLQNL Trigger: CAAGTTCTGTAGTCTTGGAAAAATAACAACTAACCAGCGCTCCAAAGGACAACCTAAGGAAAAGGAGGGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | AATTTTGTTCTCAAGTCCGTTCATGTTAACGCCTGTTaGGTCACTGGATTCCTTGTTCCTGTCAGATTCGTG | + |
|
Preference number: 6 (lower is better) Translates to: NFVLKSVHVNAC*VTGFLVPVRFV Trigger: CACGAATCTGACAGGAACAAGGAATCCAGTGACCAAACAGGCGTTAACATGAACGGACTTGAGAACAAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 90 bp | TGGAGAAATTTCAGAGCTCTCCTCGACCTTGGAAAGCTCATCTTCTaGCACTGGAACACTAATATCCTGGAAATCTTCTCTTCTTTCTGT | + |
|
Preference number: 6 (lower is better) Translates to: WRNFRALLDLGKLIF*HWNTNILEIFSSFC Trigger: ACAGAAAGAAGAGAAGATTTCCAGGATATTAGTGTTCCAGTGCAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTCTGAAATTTCTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS GCA 72 bp | ATCAGGATTAGATGCTTTGTTGTACAGCTCATAATCTaGTTTGCTCTTTTGTCCACCGAGAAGTCCAATACC | + |
|
Preference number: 6 (lower is better) Translates to: IRIRCFVVQLII*FALLSTEKSNT Trigger: GGTATTGGACTTCTCGGTGGACAAAAGAGCAAAGCAGATTATGAGCTGTACAACAAAGCATCTAATCCTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS CAA 72 bp | CGCTGGTTAGTTGTTATTTTTCCAAGACTACAGAACTaGGAAAGAATGCTGGGTTGCTTAGTGGATGGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: RWLVVIFPRLQN*ERMLGCLVDGF Trigger: AAAGCCATCCACTAAGCAACCCAGCATTCTTTCCAAGTTCTGTAGTCTTGGAAAAATAACAACTAACCAGCG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | TCTTCAACATCACCCTCCTTTTCCTTAGGTTGTCCTTaGGAGCGCTGGTTAGTTGTTATTTTTCCAAGACTA | + |
|
Preference number: 6 (lower is better) Translates to: SSTSPSFSLGCP*ERWLVVIFPRL Trigger: TAGTCTTGGAAAAATAACAACTAACCAGCGCTCCAAAGGACAACCTAAGGAAAAGGAGGGTGATGTTGAAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 72 bp | CTCCTACAATTCTCTCCACTGAAGCAAACTGTGAAATaGCCCATCTCAAGGTCTTCATTTCTGTTTTTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: LLQFSPLKQTVK*PISRSSFLFLA Trigger: AGCCAAAAACAGAAATGAAGACCTTGAGATGGGCAATTTCACAGTTTGCTTCAGTGGAGAGAATTGTAGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 90 bp | CCTTTGGAGCGCTGGTTAGTTGTTATTTTTCCAAGACTACAGAACTaGGAAAGAATGCTGGGTTGCTTAGTGGATGGCTTTAACCAATTT | + |
|
Preference number: 6 (lower is better) Translates to: PLERWLVVIFPRLQN*ERMLGCLVDGFNQF Trigger: AAATTGGTTAAAGCCATCCACTAAGCAACCCAGCATTCTTTCCAAGTTCTGTAGTCTTGGAAAAATAACAACTAACCAGCGCTCCAAAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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| CDS CAA 90 bp | ATTTATCCTCTCCTACAATTCTCTCCACTGAAGCAAACTGTGAAATaGCCCATCTCAAGGTCTTCATTTCTGTTTTTGGCTCTGGAGAAA | + |
|
Preference number: 6 (lower is better) Translates to: IYPLLQFSPLKQTVK*PISRSSFLFLALEK Trigger: TTTCTCCAGAGCCAAAAACAGAAATGAAGACCTTGAGATGGGCAATTTCACAGTTTGCTTCAGTGGAGAGAATTGTAGGAGAGGATAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS GCA 72 bp | AACTTCAGGCATTTTATCAAACAGGAGACTTCGCTCTaGTTCCGTATAATGATGGCAATTTTCACAGAAGTA | + |
|
Preference number: 6 (lower is better) Translates to: NFRHFIKQETSL*FRIMMAIFTEV Trigger: TACTTCTGTGAAAATTGCCATCATTATACGGAAGCAGAGCGAAGTCTCCTGTTTGATAAAATGCCTGAAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS CAA 72 bp | TGCTTTGTTGTACAGCTCATAATCTGCTTTGCTCTTTaGTCCACCGAGAAGTCCAATACCTTCTACATTTTT | + |
|
Preference number: 6 (lower is better) Translates to: CFVVQLIICFAL*STEKSNTFYIF Trigger: AAAAATGTAGAAGGTATTGGACTTCTCGGTGGACAAAAGAGCAAAGCAGATTATGAGCTGTACAACAAAGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
||
| CDS CCA 72 bp | AGTATCATTAGTTTCAGAATTTCTATTGTCGGTGAATaGTGTCCCAACCACCTTATCAGGATTAGATGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: SIISFRISIVGE*CPNHLIRIRCF Trigger: AAAGCATCTAATCCTGATAAGGTGGTTGGGACACCATTCACCGACAATAGAAATTCTGAAACTAATGATACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030289.9 ENSMUST00000091358.11 |
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