RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029407

Ensembl transcript IDs: ENSMUST00000031355.10, ENSMUST00000201642.2, ENSMUST00000202155.2

Found 262 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCTTGTCTTTCTCGGTTTGCAGGATGGCGATGGTGCTATTGGATaGGTCCAGCTGCTTTTGAATGGCGGTCCTCTCCTCAGACAGCGC +
Preference number: 1 (lower is better)
Translates to: QLVFLGLQDGDGAIG*VQLLLNGGPLLRQR
Trigger: GCGCTGTCTGAGGAGAGGACCGCCATTCAAAAGCAGCTGGACTCATCCAATAGCACCATCGCCATCCTGCAAACCGAGAAAGACAAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 90 bp GATTGTACTGGTCCTTGTGCTGCTGAATCTGAGATGCCTGCTGGGTaGCTGCTGTCTGTAGCTGCTCGTTCTGACACTTCAGGGTGGAGA +
Preference number: 1 (lower is better)
Translates to: DCTGPCAAESEMPAG*LLSVAARSDTSGWR
Trigger: TCTCCACCCTGAAGTGTCAGAACGAGCAGCTACAGACAGCAGTCACCCAGCAGGCATCTCAGATTCAGCAGCACAAGGACCAGTACAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 90 bp GCGCCTGCTGACTTTTTAACTCTTCTATCTCTTCCCTCAGCCGACTaGTTTCTTCCGGCTGAATGCCATTCACCTGAGCCCCGTCACCGT +
Preference number: 1 (lower is better)
Translates to: APADFLTLLSLPSAD*FLPAECHSPEPRHR
Trigger: ACGGTGACGGGGCTCAGGTGAATGGCATTCAGCCGGAAGAAATCAGTCGGCTGAGGGAAGAGATAGAAGAGTTAAAAAGTCAGCAGGCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CCA 90 bp AGTCCAGCTTGTCTTTCTCGGTTTGCAGGATGGCGATGGTGCTATTaGATGAGTCCAGCTGCTTTTGAATGGCGGTCCTCTCCTCAGACA +
Preference number: 1 (lower is better)
Translates to: SPACLSRFAGWRWCY*MSPAAFEWRSSPQT
Trigger: TGTCTGAGGAGAGGACCGCCATTCAAAAGCAGCTGGACTCATCCAATAGCACCATCGCCATCCTGCAAACCGAGAAAGACAAGCTGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 90 bp GTTTGCAGGATGGCGATGGTGCTATTGGATGAGTCCAGCTGCTTTTaGATGGCGGTCCTCTCCTCAGACAGCGCTTTAATCTCATTCTTT +
Preference number: 1 (lower is better)
Translates to: VCRMAMVLLDESSCF*MAVLSSDSALISFF
Trigger: AAAGAATGAGATTAAAGCGCTGTCTGAGGAGAGGACCGCCATTCAAAAGCAGCTGGACTCATCCAATAGCACCATCGCCATCCTGCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR GCA 90 bp AACTGGGACTTTAATGCTGTCAGTTCCTGCTTTAACTCTGCAACTTaGTCGGGATCTCTGGGAGGACATGTTGCTGAAGCCTGTTCACTC +
Preference number: 1 (lower is better)
Translates to: NWDFNAVSSCFNSAT*SGSLGGHVAEACSL
Trigger: GAGTGAACAGGCTTCAGCAACATGTCCTCCCAGAGATCCCGAGCAAGTTGCAGAGTTAAAGCAGGAACTGACAGCATTAAAGTCCCAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR GCA 90 bp GCTCGGGATCTCTGGGAGGACATGTTGCTGAAGCCTGTTCACTCATaGCAGACGCTTGCGAAGATTTCAAATTTTCAATCAATGAGTCCT +
Preference number: 1 (lower is better)
Translates to: ARDLWEDMLLKPVHS*QTLAKISNFQSMSP
Trigger: AGGACTCATTGATTGAAAATTTGAAATCTTCGCAAGCGTCTGGCATGAGTGAACAGGCTTCAGCAACATGTCCTCCCAGAGATCCCGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CCA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATaGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTTTT +
Preference number: 1 (lower is better)
Translates to: STEVTECLKAISEPT*QTALPPHAFKGGTF
Trigger: AAAAGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR TCA 90 bp ATCAATGAGTCCTTTTCAGCTAGCTGGCCTTGTAAGAGCGCCTGCTaGCTTTTTAACTCTTCTATCTCTTCCCTCAGCCGACTGATTTCT +
Preference number: 1 (lower is better)
Translates to: INESFSASWPCKSAC*LFNSSISSLSRLIS
Trigger: AGAAATCAGTCGGCTGAGGGAAGAGATAGAAGAGTTAAAAAGTCAGCAGGCGCTCTTACAAGGCCAGCTAGCTGAAAAGGACTCATTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 90 bp GGTCTCCAGATTCATCTTCTTCTTCAACTGGATGACCGAGATCCTTaGGTTTACTCTTCAGTGACAGGATTTTCTGATCTTGATCTGCTA +
Preference number: 1 (lower is better)
Translates to: GLQIHLLLQLDDRDP*VYSSVTGFSDLDLL
Trigger: TAGCAGATCAAGATCAGAAAATCCTGTCACTGAAGAGTAAACTCAAGGATCTCGGTCATCCAGTTGAAGAAGAAGATGAATCTGGAGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CCA 90 bp TTCTTTCACCAGCTTTGTAAACTCATGATCAAATATCATATACTCTaGACTCGGAAAGTTTGGCTGGGGTTTCTGAGACGCTCTGGAATA +
Preference number: 1 (lower is better)
Translates to: FFHQLCKLMIKYHIL*TRKVWLGFLRRSGI
Trigger: TATTCCAGAGCGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCAGAGTATATGATATTTGATCATGAGTTTACAAAGCTGGTGAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR GCA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGATGCATTGCCACCACATaGCTTCAAAGGGGGTACTTT +
Preference number: 2 (lower is better)
Translates to: GPAGRQALTRNCPILISGCIATT*LQRGYF
Trigger: AAAGTACCCCCTTTGAAGGCATGTGGTGGCAATGCA...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR GCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCATGGCAAACTGCATTaGCACCACATGCCTTCAAAG +
Preference number: 2 (lower is better)
Translates to: PRWTASTHSELSHPDLGRHGKLH*HHMPSK
Trigger: CTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATG...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGATCAGTGAACCAACATaGCAAACTGCATTGCCACCA +
Preference number: 2 (lower is better)
Translates to: PRWTASTHSELSHPDLGRISEPT*QTALPP
Trigger: TGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGAT...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR TCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTTTGGCTGGGGTTTCTaGGACGCTCTGGAATATAAC +
Preference number: 2 (lower is better)
Translates to: QALTRNCPILISGGTVGVFGWGF*DALEYN
Trigger: GTTATATTCCAGAGCGTCTCAGAAACCCCAGCCAAA...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR GCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGCATTGCCACCACATaGCTTCAAAGGGGGTACTTT +
Preference number: 2 (lower is better)
Translates to: QALTRNCPILISGGTVGVCIATT*LQRGYF
Trigger: AAAGTACCCCCTTTGAAGGCATGTGGTGGCAATGCA...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR GCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTCATGGCAAACTGCATTaGCACCACATGCCTTCAAAG +
Preference number: 2 (lower is better)
Translates to: QALTRNCPILISGGTVGVHGKLH*HHMPSK
Trigger: CTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATG...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR TCA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAAATAAAAGTTCCACATaGAGTCAGTTTTCCACATGG +
Preference number: 2 (lower is better)
Translates to: GPAGRQALTRNCPILISGNKSST*SQFSTW
Trigger: CCATGTGGAAAACTGACTTCATGTGGAACTTTTATT...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR GCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTGAGCTTGGTGCCCTGTaGAAATTTTATTTTGGGAGA +
Preference number: 2 (lower is better)
Translates to: QALTRNCPILISGGTVGVELGAL*KFYFGR
Trigger: TCTCCCAAAATAAAATTTGCACAGGGCACCAAGCTC...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR GCA 90 bp AGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGGAGCTTGGTGCCCTGTaGAAATTTTATTTTGGGAGA +
Preference number: 2 (lower is better)
Translates to: STHSELSHPDLGRHSGGLELGAL*KFYFGR
Trigger: TCTCCCAAAATAAAATTTGCACAGGGCACCAAGCTC...CAAACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR GCA 90 bp GCTTGTCTTTCTCGGTTTGCAGGATGGCGATGGTGCTATTGGATGAGTCCAGCTTTTTGCCAAGGTCTCTaGTCTCTGCAGCAGCTCGCA +
Preference number: 2 (lower is better)
Translates to: ACLSRFAGWRWCYWMSPAFCQGL*SLQQLA
Trigger: TGCGAGCTGCTGCAGAGAGCAGAGACCTTGGCAAAA...AGCTGGACTCATCCAATAGCACCATCGCCATCCTGCAAACCGAGAAAGACAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CCA 90 bp AGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGGGTACTTTTGGAGCTTaGTGCCCTGTGCAAATTTTA +
Preference number: 2 (lower is better)
Translates to: STHSELSHPDLGRHSGGLGTFGA*CPVQIL
Trigger: TAAAATTTGCACAGGGCACCAAGCTCCAAAAGTACC...CAAACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR CAA 90 bp TTCCGGCTGAATGCCATTCACCTGAGCCCCGTCACCGTGGGAACCTaGATGGTGATTGTCTTTTCCGAGCTGAACTTTGAGGAGATTGTA +
Preference number: 2 (lower is better)
Translates to: FRLNAIHLSPVTVGT*MVIVFSELNFEEIV
Trigger: TACAATCTCCTCAAAGTTCAGCTCGGAAAAGACAATCACCATCAAGGTTCCCACGGTGACGGGGCTCAGGTGAATGGCATTCAGCCGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CAA 90 bp CCTGCTTTAACTCTGCAACTTGCTCGGGATCTCTGGGAGGACATGTaGCTGAAGCCTGTTCACTCATGCCAGACGCTTGCGAAGATTTCA +
Preference number: 2 (lower is better)
Translates to: PALTLQLARDLWEDM*LKPVHSCQTLAKIS
Trigger: TGAAATCTTCGCAAGCGTCTGGCATGAGTGAACAGGCTTCAGCAACATGTCCTCCCAGAGATCCCGAGCAAGTTGCAGAGTTAAAGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CAA 90 bp ACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCATaGCCACCACATGCCTTCAAAGGGGGTACTTTTGGAGCTTGGTGC +
Preference number: 2 (lower is better)
Translates to: TECLKAISEPTWQTA*PPHAFKGGTFGAWC
Trigger: GCACCAAGCTCCAAAAGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR GCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTACTTTTGGAGCTTGGTaGCCTGTGCAAATTTTATTT +
Preference number: 2 (lower is better)
Translates to: QALTRNCPILISGGTVGVTFGAW*PVQILF
Trigger: AAATAAAATTTGCACAGGGCACCAAGCTCCAAAAGT...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGATGGACTCGGAAAGTTTaGCTGGGGTTTCTGAGACGC +
Preference number: 2 (lower is better)
Translates to: EPQATLSTVLSLQGLISRWTRKV*LGFLRR
Trigger: GCGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCA...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR GCA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTAAGGTCTCTGCTCTCTaGAGCAGCTCGCAGTTCTCC +
Preference number: 2 (lower is better)
Translates to: STEVTECLKAISEPTWQTKVSAL*SSSQFS
Trigger: GGAGAACTGCGAGCTGCTGCAGAGAGCAGAGACCTT...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR TCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAAAGTCACAGAGTGTCTaGAAGCCATCAGTGAACCAA +
Preference number: 2 (lower is better)
Translates to: EPQATLSTVLSLQGLISRKSQSV*KPSVNQ
Trigger: TTGGTTCACTGATGGCTTTCAGACACTCTGTGACTT...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CCA 90 bp TTTGAGGAGATTGTACTGGTCCTTGTGCTGCTGAATCTGAGATGCCTGCTGGGTGGTACTTTTGGAGCTTaGTGCCCTGTGCAAATTTTA +
Preference number: 2 (lower is better)
Translates to: FEEIVLVLVLLNLRCLLGGTFGA*CPVQIL
Trigger: TAAAATTTGCACAGGGCACCAAGCTCCAAAAGTACC...ACCCAGCAGGCATCTCAGATTCAGCAGCACAAGGACCAGTACAATCTCCTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAATCAGTGAACCAACATaGCAAACTGCATTGCCACCA +
Preference number: 2 (lower is better)
Translates to: EPQATLSTVLSLQGLISRISEPT*QTALPP
Trigger: TGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGAT...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR CAA 90 bp AGGTCATCTTGTTCTTTCTTAGAATCCGTAACTTCCAAGTCCAGCTaGTCTTTCTCGGTTTGCAGGATGGCGATGGTGCTATTGGATGAG +
Preference number: 2 (lower is better)
Translates to: RSSCSFLESVTSKSS*SFSVCRMAMVLLDE
Trigger: CTCATCCAATAGCACCATCGCCATCCTGCAAACCGAGAAAGACAAGCTGGACTTGGAAGTTACGGATTCTAAGAAAGAACAAGATGACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CCA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGAGGTACTTTTGGAGCTTaGTGCCCTGTGCAAATTTTA +
Preference number: 2 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGGTFGA*CPVQIL
Trigger: TAAAATTTGCACAGGGCACCAAGCTCCAAAAGTACC...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR TCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTAATAAAAGTTCCACATaGAGTCAGTTTTCCACATGG +
Preference number: 2 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTNKSST*SQFSTW
Trigger: CCATGTGGAAAACTGACTTCATGTGGAACTTTTATT...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR GCA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCAGAGCTTGGTGCCCTGTaGAAATTTTATTTTGGGAGA +
Preference number: 2 (lower is better)
Translates to: TEVTECLKAISEPTWQTAELGAL*KFYFGR
Trigger: TCTCCCAAAATAAAATTTGCACAGGGCACCAAGCTC...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CCA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAGTTTCTGAGACGCTCTaGAATATAACTCATGTTTGC +
Preference number: 2 (lower is better)
Translates to: APGYPKYSPFFTRINQPRVSETL*NITHVC
Trigger: GCAAACATGAGTTATATTCCAGAGCGTCTCAGAAAC...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR TCA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACAAAGTCACAGAGTGTCTaGAAGCCATCAGTGAACCAA +
Preference number: 2 (lower is better)
Translates to: SAENSNADLEMMTPIEYTKSQSV*KPSVNQ
Trigger: TTGGTTCACTGATGGCTTTCAGACACTCTGTGACTT...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR TCA 90 bp TGTCCTGGTCCTTGTCACCATCATCAATTTCATCATCATCGTCTTCTTGGTCTCTCTTCTTCAACTGGATaGCCGAGATCCTTGAGTTTA +
Preference number: 2 (lower is better)
Translates to: CPGPCHHHQFHHHRLLGLSSSTG*PRSLSL
Trigger: TAAACTCAAGGATCTCGGTCATCCAGTTGAAGAAGA...GAGACCAAGAAGACGATGATGATGAAATTGATGATGGTGACAAGGACCAGGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR TCA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCAATCCTAGTTTCTCTATaGAATTCTCTTTGCCAATCC +
Preference number: 2 (lower is better)
Translates to: TEVTECLKAISEPTWQTAILVSL*NSLCQS
Trigger: GGATTGGCAAAGAGAATTTCATAGAGAAACTAGGAT...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR TCA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGAGTTTACTCTTCAGTaGCAGGATTTTCTGATCTTG +
Preference number: 2 (lower is better)
Translates to: STEVTECLKAISEPTWQTEFTLQ*QDFLIL
Trigger: CAAGATCAGAAAATCCTGTCACTGAAGAGTAAACTC...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR GCA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCAACTTTTGGAGCTTGGTaGCCTGTGCAAATTTTATTT +
Preference number: 2 (lower is better)
Translates to: TEVTECLKAISEPTWQTATFGAW*PVQILF
Trigger: AAATAAAATTTGCACAGGGCACCAAGCTCCAAAAGT...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR GCA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAATGCATTGCCACCACATaGCTTCAAAGGGGGTACTTT +
Preference number: 2 (lower is better)
Translates to: LIKCVSTEVTECLKAISECIATT*LQRGYF
Trigger: AAAGTACCCCCTTTGAAGGCATGTGGTGGCAATGCA...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CCA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACAAAATATCATATACTCTaGACTCGGAAAGTTTGGCTG +
Preference number: 2 (lower is better)
Translates to: SAENSNADLEMMTPIEYTKYHIL*TRKVWL
Trigger: CAGCCAAACTTTCCGAGTCCAGAGTATATGATATTT...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR GCA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTACGATGTTATCATGCTaGTCTAAGGTTTTCTTTACC +
Preference number: 2 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTTMLSC*SKVFFT
Trigger: GGTAAAGAAAACCTTAGAGCAGCATGATAACATCGT...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 72 bp CTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTaGTCTCGGGAGGCACAGTGGGGGTTTGAGGGGATG +
Preference number: 3 (lower is better)
Translates to: LDGKHSLGTVPS*SREAQWGFEGM
Trigger: CATCCCCTCAAACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CAA 90 bp GGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCAAAGGGGGTACTTTaGGAGCTTGGTGCCCTGTGC +
Preference number: 3 (lower is better)
Translates to: GTIFPLSRQNVAPLDGKHSKGVL*ELGALC
Trigger: GCACAGGGCACCAAGCTCCAAAAGTACCCCCTTTGA...GTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CAA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTCAAAGGGGGTACTTTaGGAGCTTGGTGCCCTGTGC +
Preference number: 3 (lower is better)
Translates to: QALTRNCPILISGGTVGVSKGVL*ELGALC
Trigger: GCACAGGGCACCAAGCTCCAAAAGTACCCCCTTTGA...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CAA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGACATGGCAAACTGCATaGCCACCACATGCCTTCAAA +
Preference number: 3 (lower is better)
Translates to: PRWTASTHSELSHPDLGRTWQTA*PPHAFK
Trigger: TTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGT...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR CCA 72 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTaGACGGCAAGCACTCACTCGGAACTGTCCCATCCT +
Preference number: 3 (lower is better)
Translates to: QSFLSVGRMWPR*TASTHSELSHP
Trigger: AGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CAA 90 bp AGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGACATGGCAAACTGCATaGCCACCACATGCCTTCAAA +
Preference number: 3 (lower is better)
Translates to: STHSELSHPDLGRHSGGLTWQTA*PPHAFK
Trigger: TTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGT...CAAACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR TCA 72 bp GGTCCTTGTGCTGCTGAATCTGAGATGCCTGCTGGGTaGCTGCTGTCTGTAGCTGCTCGTTCTGACACTTCA +
Preference number: 3 (lower is better)
Translates to: GPCAAESEMPAG*LLSVAARSDTS
Trigger: TGAAGTGTCAGAACGAGCAGCTACAGACAGCAGTCACCCAGCAGGCATCTCAGATTCAGCAGCACAAGGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CAA 90 bp GCTTGTCTTTCTCGGTTTGCAGGATGGCGATGGTGCTATTGGATGAGTCCAGCTGTCACCGTGGGAACCTaGATGGTGATTGTCTTTTCC +
Preference number: 3 (lower is better)
Translates to: ACLSRFAGWRWCYWMSPAVTVGT*MVIVFS
Trigger: GGAAAAGACAATCACCATCAAGGTTCCCACGGTGAC...AGCTGGACTCATCCAATAGCACCATCGCCATCCTGCAAACCGAGAAAGACAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 72 bp ATGGCGATGGTGCTATTGGATGAGTCCAGCTGCTTTTaGATGGCGGTCCTCTCCTCAGACAGCGCTTTAATC +
Preference number: 3 (lower is better)
Translates to: MAMVLLDESSCF*MAVLSSDSALI
Trigger: GATTAAAGCGCTGTCTGAGGAGAGGACCGCCATTCAAAAGCAGCTGGACTCATCCAATAGCACCATCGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR GCA 72 bp TCCGTAACTTCCAAGTCCAGCTTGTCTTTCTCGGTTTaGAGGATGGCGATGGTGCTATTGGATGAGTCCAGC +
Preference number: 3 (lower is better)
Translates to: SVTSKSSLSFSV*RMAMVLLDESS
Trigger: GCTGGACTCATCCAATAGCACCATCGCCATCCTGCAAACCGAGAAAGACAAGCTGGACTTGGAAGTTACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CCA 72 bp CTGCTGTCTGTAGCTGCTCGTTCTGACACTTCAGGGTaGAGACTTGCTGTTTCAGTTCCTCCAGTTGTAGGT +
Preference number: 3 (lower is better)
Translates to: LLSVAARSDTSG*RLAVSVPPVVG
Trigger: ACCTACAACTGGAGGAACTGAAACAGCAAGTCTCCACCCTGAAGTGTCAGAACGAGCAGCTACAGACAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CCA 72 bp GTTCCTGCTTTAACTCTGCAACTTGCTCGGGATCTCTaGGAGGACATGTTGCTGAAGCCTGTTCACTCATGC +
Preference number: 3 (lower is better)
Translates to: VPALTLQLARDL*EDMLLKPVHSC
Trigger: GCATGAGTGAACAGGCTTCAGCAACATGTCCTCCCAGAGATCCCGAGCAAGTTGCAGAGTTAAAGCAGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CCA 72 bp TGTCTTTCTCGGTTTGCAGGATGGCGATGGTGCTATTaGATGAGTCCAGCTGCTTTTGAATGGCGGTCCTCT +
Preference number: 3 (lower is better)
Translates to: CLSRFAGWRWCY*MSPAAFEWRSS
Trigger: AGAGGACCGCCATTCAAAAGCAGCTGGACTCATCCAATAGCACCATCGCCATCCTGCAAACCGAGAAAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR CCA 72 bp GTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATaGCAAACTGCATTGCCACCACATGCCTTCAAAGGG +
Preference number: 3 (lower is better)
Translates to: VTECLKAISEPT*QTALPPHAFKG
Trigger: CCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR CCA 72 bp AGTCCAGCTTGTCTTTCTCGGTTTGCAGGATGGCGATaGTGCTATTGGATGAGTCCAGCTGCTTTTGAATGG +
Preference number: 3 (lower is better)
Translates to: SPACLSRFAGWR*CYWMSPAAFEW
Trigger: CCATTCAAAAGCAGCTGGACTCATCCAATAGCACCATCGCCATCCTGCAAACCGAGAAAGACAAGCTGGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 72 bp GACTTTTTAACTCTTCTATCTCTTCCCTCAGCCGACTaGTTTCTTCCGGCTGAATGCCATTCACCTGAGCCC +
Preference number: 3 (lower is better)
Translates to: DFLTLLSLPSAD*FLPAECHSPEP
Trigger: GGGCTCAGGTGAATGGCATTCAGCCGGAAGAAATCAGTCGGCTGAGGGAAGAGATAGAAGAGTTAAAAAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 72 bp TCCTTTTCAGCTAGCTGGCCTTGTAAGAGCGCCTGCTaGCTTTTTAACTCTTCTATCTCTTCCCTCAGCCGA +
Preference number: 3 (lower is better)
Translates to: SFSASWPCKSAC*LFNSSISSLSR
Trigger: TCGGCTGAGGGAAGAGATAGAAGAGTTAAAAAGTCAGCAGGCGCTCTTACAAGGCCAGCTAGCTGAAAAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR GCA 72 bp TTTAATGCTGTCAGTTCCTGCTTTAACTCTGCAACTTaGTCGGGATCTCTGGGAGGACATGTTGCTGAAGCC +
Preference number: 3 (lower is better)
Translates to: FNAVSSCFNSAT*SGSLGGHVAEA
Trigger: GGCTTCAGCAACATGTCCTCCCAGAGATCCCGAGCAAGTTGCAGAGTTAAAGCAGGAACTGACAGCATTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR GCA 72 bp CTTCCTTCTACATCCGTGGTCTTAGCAGCACTCACATaGTCACTCTCTCCTTCTACAGGAACTGATTTTGCC +
Preference number: 3 (lower is better)
Translates to: LPSTSVVLAALT*SLSPSTGTDFA
Trigger: GGCAAAATCAGTTCCTGTAGAAGGAGAGAGTGAGCATGTGAGTGCTGCTAAGACCACGGATGTAGAAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CAA 90 bp TGTCCTGGTCCTTGTCACCATCATCAATTTCATCATCATCGTCTTCTTGGTCTCCTTGTCTTTCTCGGTTaGCAGGATGGCGATGGTGCT +
Preference number: 3 (lower is better)
Translates to: CPGPCHHHQFHHHRLLGLLVFLG*QDGDGA
Trigger: AGCACCATCGCCATCCTGCAAACCGAGAAAGACAAG...GAGACCAAGAAGACGATGATGATGAAATTGATGATGGTGACAAGGACCAGGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CAA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCAACTTCCAAGTCCAGCTaGTCTTTCTCGGTTTGCAGG +
Preference number: 3 (lower is better)
Translates to: TEVTECLKAISEPTWQTATSKSS*SFSVCR
Trigger: CCTGCAAACCGAGAAAGACAAGCTGGACTTGGAAGT...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CAA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTCTGGACTCGGAAAGTTaGGCTGGGGTTTCTGAGACG +
Preference number: 3 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTLDSES*AGVSET
Trigger: CGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCAG...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CAA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTACATGGCAAACTGCATaGCCACCACATGCCTTCAAA +
Preference number: 3 (lower is better)
Translates to: STEVTECLKAISEPTWQTTWQTA*PPHAFK
Trigger: TTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGT...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR GCA 72 bp CTCTGGGAGGACATGTTGCTGAAGCCTGTTCACTCATaGCAGACGCTTGCGAAGATTTCAAATTTTCAATCA +
Preference number: 3 (lower is better)
Translates to: LWEDMLLKPVHS*QTLAKISNFQS
Trigger: TGATTGAAAATTTGAAATCTTCGCAAGCGTCTGGCATGAGTGAACAGGCTTCAGCAACATGTCCTCCCAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 72 bp AACCTTGATGGTGATTGTCTTTTCCGAGCTGAACTTTaGGGAGATTGTACTGGTCCTTGTGCTGCTGAATCT +
Preference number: 3 (lower is better)
Translates to: NLDGDCLFRAEL*GDCTGPCAAES
Trigger: AGATTCAGCAGCACAAGGACCAGTACAATCTCCTCAAAGTTCAGCTCGGAAAAGACAATCACCATCAAGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 72 bp TCTTGGTCTCCAGATTCATCTTCTTCTTCAACTGGATaGCCGAGATCCTTGAGTTTACTCTTCAGTGACAGG +
Preference number: 3 (lower is better)
Translates to: SWSPDSSSSSTG*PRSLSLLFSDR
Trigger: CCTGTCACTGAAGAGTAAACTCAAGGATCTCGGTCATCCAGTTGAAGAAGAAGATGAATCTGGAGACCAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CAA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGATTCTGTCTTTATTTTTaGTGTGGAGGCAAACCAAAG +
Preference number: 3 (lower is better)
Translates to: APGYPKYSPFFTRINQPRFCLYF*CGGKPK
Trigger: CTTTGGTTTGCCTCCACACAAAAAATAAAGACAGAA...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR-3UTR CAA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTCTGTCTTTATTTTTaGTGTGGAGGCAAACCAAAG +
Preference number: 3 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGFCLYF*CGGKPK
Trigger: CTTTGGTTTGCCTCCACACAAAAAATAAAGACAGAA...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR CCA 72 bp CAGCTTTGTAAACTCATGATCAAATATCATATACTCTaGACTCGGAAAGTTTGGCTGGGGTTTCTGAGACGC +
Preference number: 3 (lower is better)
Translates to: QLCKLMIKYHIL*TRKVWLGFLRR
Trigger: GCGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCAGAGTATATGATATTTGATCATGAGTTTACAAAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR TCA 72 bp ATATACTCTGGACTCGGAAAGTTTGGCTGGGGTTTCTaGGACGCTCTGGAATATAACTCATGTTTGCTAATA +
Preference number: 3 (lower is better)
Translates to: IYSGLGKFGWGF*DALEYNSCLLI
Trigger: TATTAGCAAACATGAGTTATATTCCAGAGCGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCAGAGTATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
3UTR-3UTR CAA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTTTCTGTCTTTATTTTTaGTGTGGAGGCAAACCAAAG +
Preference number: 3 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTFCLYF*CGGKPK
Trigger: CTTTGGTTTGCCTCCACACAAAAAATAAAGACAGAA...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR TCA 72 bp ATTCATCTTCTTCTTCAACTGGATGACCGAGATCCTTaGGTTTACTCTTCAGTGACAGGATTTTCTGATCTT +
Preference number: 3 (lower is better)
Translates to: IHLLLQLDDRDP*VYSSVTGFSDL
Trigger: AAGATCAGAAAATCCTGTCACTGAAGAGTAAACTCAAGGATCTCGGTCATCCAGTTGAAGAAGAAGATGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
CDS-3UTR TCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGATGCTGGTGGCCAGCTaGACCCTGAGCAGTTGCTCT +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGRMLVAS*TLSSCS
Trigger: AGAGCAACTGCTCAGGGTTCAGCTGGCCACCAGCAT...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp AGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGTGGGTGGCATTTCCCTaGAGCGCATGGGCGAGGGCC +
Preference number: 4 (lower is better)
Translates to: STHSELSHPDLGRHSGGLWVAFP*SAWARA
Trigger: GGCCCTCGCCCATGCGCTGCAGGGAAATGCCACCCA...CAAACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGGCCCACACTGGAACATaGCCTTCTGGCAGCTACTGG +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGRAHTGT*PSGSYW
Trigger: CCAGTAGCTGCCAGAAGGCCATGTTCCAGTGTGGGC...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCACTGGGTGGCATTTCCCTaGAGCGCATGGGCGAGGGCC +
Preference number: 4 (lower is better)
Translates to: QSFLSVGRMWPRWTASTHWVAFP*SAWARA
Trigger: GGCCCTCGCCCATGCGCTGCAGGGAAATGCCACCCA...GTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGGCAGGATGGCGATGGTaGTATTGGATGAGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGRAGWRW*YWMSPA
Trigger: AGCTGGACTCATCCAATAGCACCATCGCCATCCTGC...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGACCTGGGAAAGAATGTTaGTGCATTGCTGCAGGAGCG +
Preference number: 4 (lower is better)
Translates to: GPAGRQALTRNCPILISGPGKEC*CIAAGA
Trigger: CGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGG...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGGATGGTGCTATTGGATaGGTCCAGCTGCTTTTGAAT +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGRDGAIG*VQLLLN
Trigger: ATTCAAAAGCAGCTGGACTCATCCAATAGCACCATC...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAAAGCCTTGGACCAACTaGTCTTCTTCTCCGAGATTT +
Preference number: 4 (lower is better)
Translates to: GPAGRQALTRNCPILISGKPWTN*SSSPRF
Trigger: AAATCTCGGAGAAGAAGAGCAGTTGGTCCAAGGCTT...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp AGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGTTTTGCCAAGGTCTCTaGTCTCTGCAGCAGCTCGCA +
Preference number: 4 (lower is better)
Translates to: STHSELSHPDLGRHSGGLFCQGL*SLQQLA
Trigger: TGCGAGCTGCTGCAGAGAGCAGAGACCTTGGCAAAA...CAAACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031355.10
CDS-3UTR CCA 90 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCACTGGAACATGGCCTTCTaGCAGCTACTGGTAGCACCG +
Preference number: 4 (lower is better)
Translates to: QSFLSVGRMWPRWTASTHWNMAF*QLLVAP
Trigger: CGGTGCTACCAGTAGCTGCCAGAAGGCCATGTTCCA...GTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTCTTGCTCGGGATCTCTaGGAGGACATGTTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: QALTRNCPILISGGTVGVLARDL*EDMLLK
Trigger: CTTCAGCAACATGTCCTCCCAGAGATCCCGAGCAAG...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031355.10
CDS-3UTR TCA 90 bp CTGGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCGGTCACTTTCTGTGCTaGCCAACCAGAGTTTTCCTC +
Preference number: 4 (lower is better)
Translates to: LGQSFLSVGRMWPRWTASGHFLC*PTRVFL
Trigger: GAGGAAAACTCTGGTTGGTCAGCACAGAAAGTGACC...GCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGTCTTCTTCAACTGGATaGCCGAGATCCTTGAGTTTA +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGRSSSTG*PRSLSL
Trigger: TAAACTCAAGGATCTCGGTCATCCAGTTGAAGAAGA...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGACCGGAGGGTTGCCGATaGTGGTGGCCAGCTGAACCC +
Preference number: 4 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGPEGCR*WWPAEP
Trigger: GGGTTCAGCTGGCCACCAGCATCGGCAACCCTCCGG...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTTTTCCCTGCAGCGCATaGGCGAGGGCCACAGCAGCA +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTFPCSA*ARATAA
Trigger: TGCTGCTGTGGCCCTCGCCCATGCGCTGCAGGGAAA...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp AGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGTTTGGCTGGGGTTTCTaGGACGCTCTGGAATATAAC +
Preference number: 4 (lower is better)
Translates to: STHSELSHPDLGRHSGGLFGWGF*DALEYN
Trigger: GTTATATTCCAGAGCGTCTCAGAAACCCCAGCCAAA...CAAACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp CTGGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCTCCTTCTACAGGAACTaGTTTTGCCAAGGTCTCTGC +
Preference number: 4 (lower is better)
Translates to: LGQSFLSVGRMWPRWTASSFYRN*FCQGLC
Trigger: GCAGAGACCTTGGCAAAATCAGTTCCTGTAGAAGGA...GCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031355.10
CDS-3UTR TCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGGAGTTTACTCTTCAGTaGCAGGATTTTCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGREFTLQ*QDFLIL
Trigger: CAAGATCAGAAAATCCTGTCACTGAAGAGTAAACTC...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCACGGGAAAGAATGTTGGTaGATTGCTGCAGGAGCGACA +
Preference number: 4 (lower is better)
Translates to: QSFLSVGRMWPRWTASTHGKECW*IAAGAT
Trigger: TGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCC...GTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGATTCTCCGAGATTTTCTaGAATCTGTCCTGTAAGGAA +
Preference number: 4 (lower is better)
Translates to: GPAGRQALTRNCPILISGFSEIF*NLSCKE
Trigger: TTCCTTACAGGACAGATTGCAGAAAATCTCGGAGAA...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACAACTCTTTGGTCTCCTaGAGCAAAGCAGACAGCCTT +
Preference number: 4 (lower is better)
Translates to: GTIFPLSRQNVAPLDGKHNSLVS*SKADSL
Trigger: AAGGCTGTCTGCTTTGCTGCAGGAGACCAAAGAGTT...GTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGCATTAAATGTAGATTaGTCACTTTCTGTGCTGACC +
Preference number: 4 (lower is better)
Translates to: GPAGRQALTRNCPILISGALNVD*SLSVLT
Trigger: GGTCAGCACAGAAAGTGACCAATCTACATTTAATGC...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGATGTATTTTGCTTCCCTaGGAAAGAATGTTGGTGCAT +
Preference number: 4 (lower is better)
Translates to: GPAGRQALTRNCPILISGCILLP*ERMLVH
Trigger: ATGCACCAACATTCTTTCCCAGGGAAGCAAAATACA...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTGATGGTGCTATTGGATaGGTCCAGCTGCTTTTGAAT +
Preference number: 4 (lower is better)
Translates to: QALTRNCPILISGGTVGVDGAIG*VQLLLN
Trigger: ATTCAAAAGCAGCTGGACTCATCCAATAGCACCATC...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp TCAGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTAATGTTGGTGCATTGCTaGAGGAGCGACACCGGAGGG +
Preference number: 4 (lower is better)
Translates to: SVNQHGKLHCHHMPSKGVMLVHC*RSDTGG
Trigger: CCCTCCGGTGTCGCTCCTGCAGCAATGCACCAACAT...TACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGGTCACGATGTTATCATaGTGCTCTAAGGTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGRVTMLS*CSKVFF
Trigger: AAAGAAAACCTTAGAGCAGCATGATAACATCGTGAC...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTTAGCAGCACTCACATaGTCACTCTCTCCTTCTACA +
Preference number: 4 (lower is better)
Translates to: QALTRNCPILISGGTVGVLAALT*SLSPST
Trigger: TGTAGAAGGAGAGAGTGAGCATGTGAGTGCTGCTAA...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGTTCTCCGAGATTTTCTaGAATCTGTCAGCATTTCTT +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGRFSEIF*NLSAFL
Trigger: AAGAAATGCTGACAGATTGCAGAAAATCTCGGAGAA...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
CDS-3UTR CCA 90 bp GGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACAGATGTTCCATAGCTTaGATTCCCACTTCTAAGCGG +
Preference number: 4 (lower is better)
Translates to: GTIFPLSRQNVAPLDGKHRCSIA*IPTSKR
Trigger: CCGCTTAGAAGTGGGAATCCAAGCTATGGAACATCT...GTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp CTGGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCAGATGTTCCATAGCTTaGATTCCCACTTCTAAGCGG +
Preference number: 4 (lower is better)
Translates to: LGQSFLSVGRMWPRWTASRCSIA*IPTSKR
Trigger: CCGCTTAGAAGTGGGAATCCAAGCTATGGAACATCT...GCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp CCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGAAAGCAACAATTTTCTaGATTGCTCCATTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: PRWTASTHSELSHPDLGRKATIF*IAPLLL
Trigger: AAGGAGCAATGGAGCAATCCAGAAAATTGTTGCTTT...CCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGACACCGGGAGGGTTGGTaGGAGATACCAGTACCCGCA +
Preference number: 4 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGHREGW*EIPVPA
Trigger: TGCGGGTACTGGTATCTCCCACCAACCCTCCCGGTG...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTGCCCACACTGGAACATaGCCTTCTGGCAGCTACTGG +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTAHTGT*PSGSYW
Trigger: CCAGTAGCTGCCAGAAGGCCATGTTCCAGTGTGGGC...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCATTTCCCTGCAGCGCATaGGCGAGGGCCACAGCAGCA +
Preference number: 4 (lower is better)
Translates to: TEVTECLKAISEPTWQTAFPCSA*ARATAA
Trigger: TGCTGCTGTGGCCCTCGCCCATGCGCTGCAGGGAAA...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCACTGGCGATGGTGCTATTaGATGAGTCCAGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: QSFLSVGRMWPRWTASTHWRWCY*MSPAAF
Trigger: AAAAGCAGCTGGACTCATCCAATAGCACCATCGCCA...GTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACACCGGAGGGTTGCCGATaGTGGTGGCCAGCTGAACCC +
Preference number: 4 (lower is better)
Translates to: SAENSNADLEMMTPIEYTPEGCR*WWPAEP
Trigger: GGGTTCAGCTGGCCACCAGCATCGGCAACCCTCCGG...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCACAAGCCTTGGACCAACTaGTCTTCTTCTCCGAGATTT +
Preference number: 4 (lower is better)
Translates to: QSFLSVGRMWPRWTASTHKPWTN*SSSPRF
Trigger: AAATCTCGGAGAAGAAGAGCAGTTGGTCCAAGGCTT...GTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACAATGCTGTCAGTTCCTaGTTTAACTCTGCAACTTGC +
Preference number: 4 (lower is better)
Translates to: GTIFPLSRQNVAPLDGKHNAVSS*FNSATC
Trigger: GCAAGTTGCAGAGTTAAAGCAGGAACTGACAGCATT...GTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031355.10
CDS-3UTR GCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTAAGGTCTCTGCTCTCTaGAGCAGCTCGCAGTTCTCC +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTKVSAL*SSSQFS
Trigger: GGAGAACTGCGAGCTGCTGCAGAGAGCAGAGACCTT...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031355.10
CDS-3UTR GCA 90 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCACTTAGCAGCACTCACATaGTCACTCTCTCCTTCTACA +
Preference number: 4 (lower is better)
Translates to: QSFLSVGRMWPRWTASTHLAALT*SLSPST
Trigger: TGTAGAAGGAGAGAGTGAGCATGTGAGTGCTGCTAA...GTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACGCATTAAATGTAGATTaGTCACTTTCTGTGCTGACC +
Preference number: 4 (lower is better)
Translates to: GTIFPLSRQNVAPLDGKHALNVD*SLSVLT
Trigger: GGTCAGCACAGAAAGTGACCAATCTACATTTAATGC...GTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGATGGAACATGGCCTTCTaGCAGCTACTGGTAGCACCG +
Preference number: 4 (lower is better)
Translates to: APGYPKYSPFFTRINQPRWNMAF*QLLVAP
Trigger: CGGTGCTACCAGTAGCTGCCAGAAGGCCATGTTCCA...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTGTTGCTCTTTCTGGGTaGCATTTCCCTGCAGCGCAT +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTVALSG*HFPAAH
Trigger: ATGCGCTGCAGGGAAATGCCACCCAGAAAGAGCAAC...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGTATTTTGCTTCCCTaGGAAAGAATGTTGGTGCAT +
Preference number: 4 (lower is better)
Translates to: QALTRNCPILISGGTVGVCILLP*ERMLVH
Trigger: ATGCACCAACATTCTTTCCCAGGGAAGCAAAATACA...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
3UTR CAA 72 bp AATGCCATTCACCTGAGCCCCGTCACCGTGGGAACCTaGATGGTGATTGTCTTTTCCGAGCTGAACTTTGAG +
Preference number: 4 (lower is better)
Translates to: NAIHLSPVTVGT*MVIVFSELNFE
Trigger: CTCAAAGTTCAGCTCGGAAAAGACAATCACCATCAAGGTTCCCACGGTGACGGGGCTCAGGTGAATGGCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
CDS-3UTR TCA 90 bp GGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACATCGTTGAAATAAATTaGAATGCCCAAAAGAAGGGC +
Preference number: 4 (lower is better)
Translates to: GTIFPLSRQNVAPLDGKHIVEIN*NAQKKG
Trigger: GCCCTTCTTTTGGGCATTTCAATTTATTTCAACGAT...GTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTACGGGAGGCCCTAGCTaGTTTAAAAGAGAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTTGGPS*FKREVR
Trigger: CCTGACTTCTCTTTTAAAGCAGCTAGGGCCTCCCGT...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTACGATGTTATCATGCTaGTCTAAGGTTTTCTTTACC +
Preference number: 4 (lower is better)
Translates to: QALTRNCPILISGGTVGVTMLSC*SKVFFT
Trigger: GGTAAAGAAAACCTTAGAGCAGCATGATAACATCGT...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGACTGCTGAATCTGAGATaGCTGCTGGGTGACTGCTGT +
Preference number: 4 (lower is better)
Translates to: APGYPKYSPFFTRINQPRLLNLR*LLGDCC
Trigger: ACAGCAGTCACCCAGCAGGCATCTCAGATTCAGCAG...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp CAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTAAAATTTCTGTAAACTaGCTTCCCAAATCCTCACTC +
Preference number: 4 (lower is better)
Translates to: QALTRNCPILISGGTVGVKISVN*LPKSSL
Trigger: GAGTGAGGATTTGGGAAGCCAGTTTACAGAAATTTT...AACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp CTGGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCCTGATACAGTATTTATaGTCTCTGTCAGGATATCAG +
Preference number: 4 (lower is better)
Translates to: LGQSFLSVGRMWPRWTASLIQYL*SLSGYQ
Trigger: CTGATATCCTGACAGAGACCATAAATACTGTATCAG...GCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGAGTTGCTCTTTCTGGGTaGCATTTCCCTGCAGCGCAT +
Preference number: 4 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGVALSG*HFPAAH
Trigger: ATGCGCTGCAGGGAAATGCCACCCAGAAAGAGCAAC...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGGTCACTTTCTGTGCTaGCCAACCAGAGTTTTCCTC +
Preference number: 4 (lower is better)
Translates to: EPQATLSTVLSLQGLISRGHFLC*PTRVFL
Trigger: GAGGAAAACTCTGGTTGGTCAGCACAGAAAGTGACC...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACGGGAGGCCCTAGCTaGTTTAAAAGAGAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: APGYPKYSPFFTRINQPRTGGPS*FKREVR
Trigger: CCTGACTTCTCTTTTAAAGCAGCTAGGGCCTCCCGT...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGGGAAAGAATGTTGGTaGATTGCTGCAGGAGCGACA +
Preference number: 4 (lower is better)
Translates to: EPQATLSTVLSLQGLISRGKECW*IAAGAT
Trigger: TGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCC...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTTTTAACTCTGCAACTTaGTCGGGATCTCTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTFNSAT*SGSLGG
Trigger: TCCTCCCAGAGATCCCGAGCAAGTTGCAGAGTTAAA...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031355.10
CDS-3UTR CCA 90 bp TCAGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTAAGGGCACATAAGCCTTaGACCAACTGCTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: SVNQHGKLHCHHMPSKGVRAHKP*TNCSSS
Trigger: AGAAGAAGAGCAGTTGGTCCAAGGCTTATGTGCCCT...TACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
3UTR CAA 72 bp CTGAAAGCCATCAGTGAACCAACATGGCAAACTGCATaGCCACCACATGCCTTCAAAGGGGGTACTTTTGGA +
Preference number: 4 (lower is better)
Translates to: LKAISEPTWQTA*PPHAFKGGTFG
Trigger: TCCAAAAGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp TCAGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTAGCCTCGGATAACCTCTaGTACAGTATTTATGGTCTC +
Preference number: 4 (lower is better)
Translates to: SVNQHGKLHCHHMPSKGVASDNL*YSIYGL
Trigger: GAGACCATAAATACTGTATCAGAGGTTATCCGAGGC...TACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTATGTTGGTGCATTGCTaGAGGAGCGACACCGGAGGG +
Preference number: 4 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTMLVHC*RSDTGG
Trigger: CCCTCCGGTGTCGCTCCTGCAGCAATGCACCAACAT...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp TCAGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTAAAGCCTTGGACCAACTaGTCTTCTTCTCCGAGATTT +
Preference number: 4 (lower is better)
Translates to: SVNQHGKLHCHHMPSKGVKPWTN*SSSPRF
Trigger: AAATCTCGGAGAAGAAGAGCAGTTGGTCCAAGGCTT...TACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTCTGCTGAATCTGAGATaGCTGCTGGGTGACTGCTGT +
Preference number: 4 (lower is better)
Translates to: STEVTECLKAISEPTWQTLLNLR*LLGDCC
Trigger: ACAGCAGTCACCCAGCAGGCATCTCAGATTCAGCAG...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCAGGATGGCGATGGTaGTATTGGATGAGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: STEVTECLKAISEPTWQTAGWRW*YWMSPA
Trigger: AGCTGGACTCATCCAATAGCACCATCGCCATCCTGC...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTTGGAAGGCAGAAGAGTaGCCACGATCTCTCCTTGTC +
Preference number: 4 (lower is better)
Translates to: STEVTECLKAISEPTWQTWKAEE*PRSLLV
Trigger: GACAAGGAGAGATCGTGGCCACTCTTCTGCCTTCCA...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTCCTGGGAAAGAATGTTaGTGCATTGCTGCAGGAGCG +
Preference number: 4 (lower is better)
Translates to: STEVTECLKAISEPTWQTPGKEC*CIAAGA
Trigger: CGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGG...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAAGGGCACATAAGCCTTaGACCAACTGCTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: EPQATLSTVLSLQGLISRRAHKP*TNCSSS
Trigger: AGAAGAAGAGCAGTTGGTCCAAGGCTTATGTGCCCT...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATGGCGATGGTGCTATTaGATGAGTCCAGCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGWRWCY*MSPAAF
Trigger: AAAAGCAGCTGGACTCATCCAATAGCACCATCGCCA...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGAGCCTCGGATAACCTCTaGTACAGTATTTATGGTCTC +
Preference number: 4 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGASDNL*YSIYGL
Trigger: GAGACCATAAATACTGTATCAGAGGTTATCCGAGGC...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCATTTGGCTGGGGTTTCTaGGACGCTCTGGAATATAAC +
Preference number: 4 (lower is better)
Translates to: TEVTECLKAISEPTWQTAFGWGF*DALEYN
Trigger: GTTATATTCCAGAGCGTCTCAGAAACCCCAGCCAAA...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAAGAGATGCCTGCTGGGTaGCTGCTGTCTGTAGCTGCT +
Preference number: 4 (lower is better)
Translates to: LIKCVSTEVTECLKAISEEMPAG*LLSVAA
Trigger: AGCAGCTACAGACAGCAGTCACCCAGCAGGCATCTC...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGATGACCGAGATCCTTaGGTTTACTCTTCAGTGACA +
Preference number: 4 (lower is better)
Translates to: EPQATLSTVLSLQGLISRDDRDP*VYSSVT
Trigger: TGTCACTGAAGAGTAAACTCAAGGATCTCGGTCATC...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCAAGGGCACATAAGCCTTaGACCAACTGCTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: TEVTECLKAISEPTWQTARAHKP*TNCSSS
Trigger: AGAAGAAGAGCAGTTGGTCCAAGGCTTATGTGCCCT...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTACATTGGCTGAGTTGTaGAGAAAATGTGTTACAGCA +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTTLAEL*RKCVTA
Trigger: TGCTGTAACACATTTTCTTCACAACTCAGCCAATGT...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGATCTTCTTCAACTGGATaGCCGAGATCCTTGAGTTTA +
Preference number: 4 (lower is better)
Translates to: APGYPKYSPFFTRINQPRSSSTG*PRSLSL
Trigger: TAAACTCAAGGATCTCGGTCATCCAGTTGAAGAAGA...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTTGGAAGGCAGAAGAGTaGCCACGATCTCTCCTTGTC +
Preference number: 4 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTWKAEE*PRSLLV
Trigger: GACAAGGAGAGATCGTGGCCACTCTTCTGCCTTCCA...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTGTTTCTGAGACGCTCTaGAATATAACTCATGTTTGC +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTVSETL*NITHVC
Trigger: GCAAACATGAGTTATATTCCAGAGCGTCTCAGAAAC...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTTGGACTCGGAAAGTTTaGCTGGGGTTTCTGAGACGC +
Preference number: 4 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTWTRKV*LGFLRR
Trigger: GCGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCA...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
3UTR CAA 72 bp TGTTCTTTCTTAGAATCCGTAACTTCCAAGTCCAGCTaGTCTTTCTCGGTTTGCAGGATGGCGATGGTGCTA +
Preference number: 4 (lower is better)
Translates to: CSFLESVTSKSS*SFSVCRMAMVL
Trigger: TAGCACCATCGCCATCCTGCAAACCGAGAAAGACAAGCTGGACTTGGAAGTTACGGATTCTAAGAAAGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
CDS-3UTR TCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTATCCTAGTTTCTCTATaGAATTCTCTTTGCCAATCC +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTILVSL*NSLCQS
Trigger: GGATTGGCAAAGAGAATTTCATAGAGAAACTAGGAT...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACACTCCTTGTTAATGCCTaGAGTAGTAAGACGCCATCG +
Preference number: 4 (lower is better)
Translates to: SAENSNADLEMMTPIEYTLLVNA*SSKTPS
Trigger: CGATGGCGTCTTACTACTGCAGGCATTAACAAGGAG...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp TCAGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTAAAAATTTCTGTAAACTaGCTTCCCAAATCCTCACTC +
Preference number: 4 (lower is better)
Translates to: SVNQHGKLHCHHMPSKGVKISVN*LPKSSL
Trigger: GAGTGAGGATTTGGGAAGCCAGTTTACAGAAATTTT...TACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAGGCCAACGGACGTaGAAATCAAACTCCTCCAAC +
Preference number: 4 (lower is better)
Translates to: LIKCVSTEVTECLKAISEPGQRT*KSNSSN
Trigger: GTTGGAGGAGTTTGATTTCCACGTCCGTTGGCCTGG...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTCTGATACAGTATTTATaGTCTCTGTCAGGATATCAG +
Preference number: 4 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTLIQYL*SLSGYQ
Trigger: CTGATATCCTGACAGAGACCATAAATACTGTATCAG...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGAGTTTCTGAGACGCTCTaGAATATAACTCATGTTTGC +
Preference number: 4 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGVSETL*NITHVC
Trigger: GCAAACATGAGTTATATTCCAGAGCGTCTCAGAAAC...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAATGGACTCGGAAAGTTTaGCTGGGGTTTCTGAGACGC +
Preference number: 4 (lower is better)
Translates to: LIKCVSTEVTECLKAISEWTRKV*LGFLRR
Trigger: GCGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCA...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp TCAGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTAAAATATCATATACTCTaGACTCGGAAAGTTTGGCTG +
Preference number: 4 (lower is better)
Translates to: SVNQHGKLHCHHMPSKGVKYHIL*TRKVWL
Trigger: CAGCCAAACTTTCCGAGTCCAGAGTATATGATATTT...TACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCAACATTGGCTGAGTTGTaGAGAAAATGTGTTACAGCA +
Preference number: 4 (lower is better)
Translates to: TEVTECLKAISEPTWQTATLAEL*RKCVTA
Trigger: TGCTGTAACACATTTTCTTCACAACTCAGCCAATGT...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAATCGTTGAAATAAATTaGAATGCCCAAAAGAAGGGC +
Preference number: 4 (lower is better)
Translates to: EPQATLSTVLSLQGLISRIVEIN*NAQKKG
Trigger: GCCCTTCTTTTGGGCATTTCAATTTATTTCAACGAT...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGACAAACCAAGGTTTCATaGGTTGAATATAAGAGCCTT +
Preference number: 4 (lower is better)
Translates to: EPQATLSTVLSLQGLISRQTKVS*VEYKSL
Trigger: AAGGCTCTTATATTCAACGCATGAAACCTTGGTTTG...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGAACGATGTTATCATGCTaGTCTAAGGTTTTCTTTACC +
Preference number: 4 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGTMLSC*SKVFFT
Trigger: GGTAAAGAAAACCTTAGAGCAGCATGATAACATCGT...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTAACTCTTTGGTCTCCTaGAGCAAAGCAGACAGCCTT +
Preference number: 4 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTNSLVS*SKADSL
Trigger: AAGGCTGTCTGCTTTGCTGCAGGAGACCAAAGAGTT...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAAAAGCAACAATTTTCTaGATTGCTCCATTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: EPQATLSTVLSLQGLISRKATIF*IAPLLL
Trigger: AAGGAGCAATGGAGCAATCCAGAAAATTGTTGCTTT...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAAAATATCATATACTCTaGACTCGGAAAGTTTGGCTG +
Preference number: 4 (lower is better)
Translates to: EPQATLSTVLSLQGLISRKYHIL*TRKVWL
Trigger: CAGCCAAACTTTCCGAGTCCAGAGTATATGATATTT...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTCATTCTTTAACTCTTTaGTCTCCTGCAGCAAAGCAG +
Preference number: 4 (lower is better)
Translates to: STEVTECLKAISEPTWQTHSLTL*SPAAKQ
Trigger: CTGCTTTGCTGCAGGAGACCAAAGAGTTAAAGAATG...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR TCA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTGATGACCGAGATCCTTaGGTTTACTCTTCAGTGACA +
Preference number: 4 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTDDRDP*VYSSVT
Trigger: TGTCACTGAAGAGTAAACTCAAGGATCTCGGTCATC...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACTCCTTGTTAATGCCTaGAGTAGTAAGACGCCATCG +
Preference number: 4 (lower is better)
Translates to: LIKCVSTEVTECLKAISELLVNA*SSKTPS
Trigger: CGATGGCGTCTTACTACTGCAGGCATTAACAAGGAG...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp ACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTGCAGTCACGATGTTATCATaGTGCTCTAAGGTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: TEVTECLKAISEPTWQTAVTMLS*CSKVFF
Trigger: AAAGAAAACCTTAGAGCAGCATGATAACATCGTGAC...TGCAGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CCA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACACATTCTTTAACTCTTTaGTCTCCTGCAGCAAAGCAG +
Preference number: 4 (lower is better)
Translates to: SAENSNADLEMMTPIEYTHSLTL*SPAAKQ
Trigger: CTGCTTTGCTGCAGGAGACCAAAGAGTTAAAGAATG...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
3UTR CAA 72 bp CATGATCAAATATCATATACTCTGGACTCGGAAAGTTaGGCTGGGGTTTCTGAGACGCTCTGGAATATAACT +
Preference number: 4 (lower is better)
Translates to: HDQISYTLDSES*AGVSETLWNIT
Trigger: AGTTATATTCCAGAGCGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCAGAGTATATGATATTTGATCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201642.2
CDS-3UTR TCA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTATCGTTGAAATAAATTaGAATGCCCAAAAGAAGGGC +
Preference number: 4 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTIVEIN*NAQKKG
Trigger: GCCCTTCTTTTGGGCATTTCAATTTATTTCAACGAT...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS-3UTR GCA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAATTCTCCGAGATTTTCTaGAATCTGTCCTGTAAGGAA +
Preference number: 4 (lower is better)
Translates to: LIKCVSTEVTECLKAISEFSEIF*NLSCKE
Trigger: TTCCTTACAGGACAGATTGCAGAAAATCTCGGAGAA...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS TCA 90 bp GGAGCGACACCGGAGGGTTGCCGATGCTGGTGGCCAGCTGAACCCTaGGCAGTTGCTCTTTCTGGGTGGCATTTCCCTGCAGCGCATGGG +
Preference number: 5 (lower is better)
Translates to: GATPEGCRCWWPAEP*AVALSGWHFPAAHG
Trigger: CCCATGCGCTGCAGGGAAATGCCACCCAGAAAGAGCAACTGCTCAGGGTTCAGCTGGCCACCAGCATCGGCAACCCTCCGGTGTCGCTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACGTAGCACCGGGAGGGTaGGTGGGAGATACCAGTACC +
Preference number: 5 (lower is better)
Translates to: GTIFPLSRQNVAPLDGKHVAPGG*VGDTST
Trigger: GGTACTGGTATCTCCCACCAACCCTCCCGGTGCTAC...GTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGACTGAACCCTGAGCAGTaGCTCTTTCTGGGTGGCATT +
Preference number: 5 (lower is better)
Translates to: GPAGRQALTRNCPILISGLNPEQ*LFLGGI
Trigger: AATGCCACCCAGAAAGAGCAACTGCTCAGGGTTCAG...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 90 bp CCCATGGGGCTGACTAGGATGATCTGCTGCACGGGAGGCCCTAGCTaGTTTAAAAGAGAAGTCAGGAGTCTCACGCCAGGCCAACGGACG +
Preference number: 5 (lower is better)
Translates to: PMGLTRMICCTGGPS*FKREVRSLTPGQRT
Trigger: CGTCCGTTGGCCTGGCGTGAGACTCCTGACTTCTCTTTTAAAGCAGCTAGGGCCTCCCGTGCAGCAGATCATCCTAGTCAGCCCCATGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 90 bp CCAGTAGCCATCAGGATAGTGCAAAGCTGCTGGAGTAGCCCACACTaGAACATGGCCTTCTGGCAGCTACTGGTAGCACCGGGAGGGTTG +
Preference number: 5 (lower is better)
Translates to: PVAIRIVQSCWSSPH*NMAFWQLLVAPGGL
Trigger: CAACCCTCCCGGTGCTACCAGTAGCTGCCAGAAGGCCATGTTCCAGTGTGGGCTACTCCAGCAGCTTTGCACTATCCTGATGGCTACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 90 bp ACCCTGAGCAGTTGCTCTTTCTGGGTGGCATTTCCCTGCAGCGCATaGGCGAGGGCCACAGCAGCACACCAGTTAGAGAGAGAGTCTGTA +
Preference number: 5 (lower is better)
Translates to: TLSSCSFWVAFPCSA*ARATAAHQLERESV
Trigger: TACAGACTCTCTCTCTAACTGGTGTGCTGCTGTGGCCCTCGCCCATGCGCTGCAGGGAAATGCCACCCAGAAAGAGCAACTGCTCAGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TCAGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTAAGCGACACCGGAGGGTaGCCGATGCTGGTGGCCAGC +
Preference number: 5 (lower is better)
Translates to: SVNQHGKLHCHHMPSKGVSDTGG*PMLVAS
Trigger: GCTGGCCACCAGCATCGGCAACCCTCCGGTGTCGCT...TACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACCTGGACTCGGAAAGTTaGGCTGGGGTTTCTGAGACG +
Preference number: 5 (lower is better)
Translates to: GTIFPLSRQNVAPLDGKHLDSES*AGVSET
Trigger: CGTCTCAGAAACCCCAGCCAAACTTTCCGAGTCCAG...GTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGATCATTCTTTAACTCTTaGGTCTCCTGCAGCAAAGCA +
Preference number: 5 (lower is better)
Translates to: GPAGRQALTRNCPILISGSFFNS*VSCSKA
Trigger: TGCTTTGCTGCAGGAGACCAAAGAGTTAAAGAATGA...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCACCTTGTCTTTCTCGGTTaGCAGGATGGCGATGGTGCT +
Preference number: 5 (lower is better)
Translates to: QSFLSVGRMWPRWTASTHLVFLG*QDGDGA
Trigger: AGCACCATCGCCATCCTGCAAACCGAGAAAGACAAG...GTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp CTGGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTTCCAAGTCCAGCTaGTCTTTCTCGGTTTGCAGG +
Preference number: 5 (lower is better)
Translates to: LGQSFLSVGRMWPRWTASTSKSS*SFSVCR
Trigger: CCTGCAAACCGAGAAAGACAAGCTGGACTTGGAAGT...GCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GGCCCCGCTGGACGGCAAGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGACACCAAAAGGTCATCTaGTTCTTTCTTAGAATCCGT +
Preference number: 5 (lower is better)
Translates to: GPAGRQALTRNCPILISGHQKVI*FFLRIR
Trigger: ACGGATTCTAAGAAAGAACAAGATGACCTTTTGGTG...TCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCTTGCCGTCCAGCGGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 90 bp AGGATATCAGCAGGAATCCCAGTAGCCATCAGGATAGTGCAAAGCTaGTGGAGTAGCCCACACTGGAACATGGCCTTCTGGCAGCTACTG +
Preference number: 5 (lower is better)
Translates to: RISAGIPVAIRIVQS*WSSPHWNMAFWQLL
Trigger: CAGTAGCTGCCAGAAGGCCATGTTCCAGTGTGGGCTACTCCAGCAGCTTTGCACTATCCTGATGGCTACTGGGATTCCTGCTGATATCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAGTAGCACCGGGAGGGTaGGTGGGAGATACCAGTACC +
Preference number: 5 (lower is better)
Translates to: APGYPKYSPFFTRINQPRVAPGG*VGDTST
Trigger: GGTACTGGTATCTCCCACCAACCCTCCCGGTGCTAC...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 90 bp ATATCAGCAGGAATCCCAGTAGCCATCAGGATAGTGCAAAGCTGCTaGAGTAGCCCACACTGGAACATGGCCTTCTGGCAGCTACTGGTA +
Preference number: 5 (lower is better)
Translates to: ISAGIPVAIRIVQSC*SSPHWNMAFWQLLV
Trigger: TACCAGTAGCTGCCAGAAGGCCATGTTCCAGTGTGGGCTACTCCAGCAGCTTTGCACTATCCTGATGGCTACTGGGATTCCTGCTGATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTAAGAATGTTGGTGCATaGCTGCAGGAGCGACACCGG +
Preference number: 5 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTKNVGA*LQERHR
Trigger: CCGGTGTCGCTCCTGCAGCAATGCACCAACATTCTT...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp CTGGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCTTAACAACCCGACTCTaGTCTGTATTTTGCTTCCCT +
Preference number: 5 (lower is better)
Translates to: LGQSFLSVGRMWPRWTASLTTRL*SVFCFP
Trigger: AGGGAAGCAAAATACAGACAAGAGTCGGGTTGTTAA...GCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS TCA 90 bp GAGAGAGTCTGTAGAAAACAAACCTCCGCAGAGCAGCTGACCGGCTaGGACGGAGTTACCTGTTGCATCAATAGTGGAAGGCAGAAGAGT +
Preference number: 5 (lower is better)
Translates to: ERVCRKQTSAEQLTG*DGVTCCINSGRQKS
Trigger: ACTCTTCTGCCTTCCACTATTGATGCAACAGGTAACTCCGTCTCAGCCGGTCAGCTGCTCTGCGGAGGTTTGTTTTCTACAGACTCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS TCA 90 bp CAGTTAGAGAGAGAGTCTGTAGAAAACAAACCTCCGCAGAGCAGCTaGCCGGCTGAGACGGAGTTACCTGTTGCATCAATAGTGGAAGGC +
Preference number: 5 (lower is better)
Translates to: QLERESVENKPPQSS*PAETELPVASIVEG
Trigger: GCCTTCCACTATTGATGCAACAGGTAACTCCGTCTCAGCCGGTCAGCTGCTCTGCGGAGGTTTGTTTTCTACAGACTCTCTCTCTAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 90 bp CAGAGCAACATTAACAACCCGACTCTTGTCTGTATTTTGCTTCCCTaGGAAAGAATGTTGGTGCATTGCTGCAGGAGCGACACCGGAGGG +
Preference number: 5 (lower is better)
Translates to: QSNINNPTLVCILLP*ERMLVHCCRSDTGG
Trigger: CCCTCCGGTGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAGACAAGAGTCGGGTTGTTAATGTTGCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp CTGGGACAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCCCAAGGTTTCATGCGTaGAATATAAGAGCCTTCTTT +
Preference number: 5 (lower is better)
Translates to: LGQSFLSVGRMWPRWTASPRFHA*NIRAFF
Trigger: AAAGAAGGCTCTTATATTCAACGCATGAAACCTTGG...GCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTGTCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp AGCACTCACTCGGAACTGTCCCATCCTGATCTCGGGAGGCACAGTGGGGGTTTGAGCATTAAATGTAGATaGGTCACTTTCTGTGCTGAC +
Preference number: 5 (lower is better)
Translates to: STHSELSHPDLGRHSGGLSIKCR*VTFCAD
Trigger: GTCAGCACAGAAAGTGACCAATCTACATTTAATGCT...CAAACCCCCACTGTGCCTCCCGAGATCAGGATGGGACAGTTCCGAGTGAGTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAAAGCGACACCGGAGGGTaGCCGATGCTGGTGGCCAGC +
Preference number: 5 (lower is better)
Translates to: LIKCVSTEVTECLKAISESDTGG*PMLVAS
Trigger: GCTGGCCACCAGCATCGGCAACCCTCCGGTGTCGCT...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGAAAGAATGTTGGTGCATaGCTGCAGGAGCGACACCGG +
Preference number: 5 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGKNVGA*LQERHR
Trigger: CCGGTGTCGCTCCTGCAGCAATGCACCAACATTCTT...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTCTTGTCTTTCTCGGTTaGCAGGATGGCGATGGTGCT +
Preference number: 5 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTLVFLG*QDGDGA
Trigger: AGCACCATCGCCATCCTGCAAACCGAGAAAGACAAG...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp CAATCTTTCCTCTCAGTAGGCAGAATGTGGCCCCGCTGGACGGCAAGCACTCACATCATCATCGTCTTCTaGGTCTCCAGATTCATCTTC +
Preference number: 5 (lower is better)
Translates to: QSFLSVGRMWPRWTASTHIIIVF*VSRFIF
Trigger: GAAGATGAATCTGGAGACCAAGAAGACGATGATGAT...GTGAGTGCTTGCCGTCCAGCGGGGCCACATTCTGCCTACTGAGAGGAAAGATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 90 bp TCCATTAATCTTGAAACACCCATGGGGCTGACTAGGATGATCTGCTaGACGGGAGGCCCTAGCTGCTTTAAAAGAGAAGTCAGGAGTCTC +
Preference number: 5 (lower is better)
Translates to: SINLETPMGLTRMIC*TGGPSCFKREVRSL
Trigger: GAGACTCCTGACTTCTCTTTTAAAGCAGCTAGGGCCTCCCGTGCAGCAGATCATCCTAGTCAGCCCCATGGGTGTTTCAAGATTAATGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTACTTCCAAGTCCAGCTaGTCTTTCTCGGTTTGCAGG +
Preference number: 5 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTTSKSS*SFSVCR
Trigger: CCTGCAAACCGAGAAAGACAAGCTGGACTTGGAAGT...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 90 bp AAGTCCATTAATCTTGAAACACCCATGGGGCTGACTAGGATGATCTaGTGCACGGGAGGCCCTAGCTGCTTTAAAAGAGAAGTCAGGAGT +
Preference number: 5 (lower is better)
Translates to: KSINLETPMGLTRMI*CTGGPSCFKREVRS
Trigger: ACTCCTGACTTCTCTTTTAAAGCAGCTAGGGCCTCCCGTGCAGCAGATCATCCTAGTCAGCCCCATGGGTGTTTCAAGATTAATGGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 90 bp GCCAGGTACAGAGCAACATTAACAACCCGACTCTTGTCTGTATTTTaGTTCCCTGGGAAAGAATGTTGGTGCATTGCTGCAGGAGCGACA +
Preference number: 5 (lower is better)
Translates to: ARYRATLTTRLLSVF*FPGKECWCIAAGAT
Trigger: TGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAGACAAGAGTCGGGTTGTTAATGTTGCTCTGTACCTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAGTAGTCTTGGTTTACTaGGCAGCCTCGGATAACCTC +
Preference number: 5 (lower is better)
Translates to: APGYPKYSPFFTRINQPRVVLVY*AASDNL
Trigger: GAGGTTATCCGAGGCTGCCAAGTAAACCAAGACTAC...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TCAGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTAAGAAGCAAAGTAGTCTaGGTTTACTTGGCAGCCTCG +
Preference number: 5 (lower is better)
Translates to: SVNQHGKLHCHHMPSKGVRSKVV*VYLAAS
Trigger: CGAGGCTGCCAAGTAAACCAAGACTACTTTGCTTCT...TACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACAGCAATAGGACAGTaGCTTAGCCAGGTACAGAGC +
Preference number: 5 (lower is better)
Translates to: APGYPKYSPFFTRINQPRTAIGQ*LSQVQS
Trigger: GCTCTGTACCTGGCTAAGCAACTGTCCTATTGCTGT...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAGTCACCGTGGGAACCTaGATGGTGATTGTCTTTTCC +
Preference number: 5 (lower is better)
Translates to: APGYPKYSPFFTRINQPRVTVGT*MVIVFS
Trigger: GGAAAAGACAATCACCATCAAGGTTCCCACGGTGAC...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGATTCTGGATTGCTCCATaGCTCCTTGTTAATGCCTGC +
Preference number: 5 (lower is better)
Translates to: EPQATLSTVLSLQGLISRFWIAP*LLVNAC
Trigger: GCAGGCATTAACAAGGAGCAATGGAGCAATCCAGAA...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAAGAAGCAAAGTAGTCTaGGTTTACTTGGCAGCCTCG +
Preference number: 5 (lower is better)
Translates to: APGYPKYSPFFTRINQPRRSKVV*VYLAAS
Trigger: CGAGGCTGCCAAGTAAACCAAGACTACTTTGCTTCT...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 90 bp GCAGACAGCCTTCCTTCTACATCCGTGGTCTTAGCAGCACTCACATaGTCACTCTCTCCTTCTACAGGAACTGATTTTGCCAAATTTTCA +
Preference number: 5 (lower is better)
Translates to: ADSLPSTSVVLAALT*SLSPSTGTDFAKFS
Trigger: TGAAAATTTGGCAAAATCAGTTCCTGTAGAAGGAGAGAGTGAGCATGTGAGTGCTGCTAAGACCACGGATGTAGAAGGAAGGCTGTCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202155.2
CDS CCA 90 bp TGGGAGATACCAGTACCCGCACAAGCTGGAGCATTAAATGTAGATTaGTCACTTTCTGTGCTGACCAACCAGAGTTTTCCTCTCCAACTT +
Preference number: 5 (lower is better)
Translates to: WEIPVPAQAGALNVD*SLSVLTNQSFPLQL
Trigger: AAGTTGGAGAGGAAAACTCTGGTTGGTCAGCACAGAAAGTGACCAATCTACATTTAATGCTCCAGCTTGTGCGGGTACTGGTATCTCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGATTGCTCCATTGCTCCTaGTTAATGCCTGCAGTAGTA +
Preference number: 5 (lower is better)
Translates to: EPQATLSTVLSLQGLISRLLHCS*LMPAVV
Trigger: TACTACTGCAGGCATTAACAAGGAGCAATGGAGCAA...TCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACACTGAACCCTGAGCAGTaGCTCTTTCTGGGTGGCATT +
Preference number: 5 (lower is better)
Translates to: SAENSNADLEMMTPIEYTLNPEQ*LFLGGI
Trigger: AATGCCACCCAGAAAGAGCAACTGCTCAGGGTTCAG...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTACAGCAATAGGACAGTaGCTTAGCCAGGTACAGAGC +
Preference number: 5 (lower is better)
Translates to: STEVTECLKAISEPTWQTTAIGQ*LSQVQS
Trigger: GCTCTGTACCTGGCTAAGCAACTGTCCTATTGCTGT...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp AGTGAACCAACATGGCAAACTGCATTGCCACCACATGCCTTCAAAGGGGGTACTAGCATTAAATGTAGATaGGTCACTTTCTGTGCTGAC +
Preference number: 5 (lower is better)
Translates to: SEPTWQTALPPHAFKGGTSIKCR*VTFCAD
Trigger: GTCAGCACAGAAAGTGACCAATCTACATTTAATGCT...AGTACCCCCTTTGAAGGCATGTGGTGGCAATGCAGTTTGCCATGTTGGTTCACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACAGTAGTCTTGGTTTACTaGGCAGCCTCGGATAACCTC +
Preference number: 5 (lower is better)
Translates to: SAENSNADLEMMTPIEYTVVLVY*AASDNL
Trigger: GAGGTTATCCGAGGCTGCCAAGTAAACCAAGACTAC...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGATTAACAACCCGACTCTaGTCTGTATTTTGCTTCCCT +
Preference number: 5 (lower is better)
Translates to: APGYPKYSPFFTRINQPRLTTRL*SVFCFP
Trigger: AGGGAAGCAAAATACAGACAAGAGTCGGGTTGTTAA...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACAGTCACCGTGGGAACCTaGATGGTGATTGTCTTTTCC +
Preference number: 5 (lower is better)
Translates to: SAENSNADLEMMTPIEYTVTVGT*MVIVFS
Trigger: GGAAAAGACAATCACCATCAAGGTTCCCACGGTGAC...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GATGACATACAGGAGCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATCATTCTTTAACTCTTaGGTCTCCTGCAGCAAAGCA +
Preference number: 5 (lower is better)
Translates to: DDIQEPQATLSTVLSLQGSFFNS*VSCSKA
Trigger: TGCTTTGCTGCAGGAGACCAAAGAGTTAAAGAATGA...TCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGCTCCTGTATGTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACATTCTGGATTGCTCCATaGCTCCTTGTTAATGCCTGC +
Preference number: 5 (lower is better)
Translates to: SAENSNADLEMMTPIEYTFWIAP*LLVNAC
Trigger: GCAGGCATTAACAAGGAGCAATGGAGCAATCCAGAA...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp GCCCCAGGCTACCCTAAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGACCAAGGTTTCATGCGTaGAATATAAGAGCCTTCTTT +
Preference number: 5 (lower is better)
Translates to: APGYPKYSPFFTRINQPRPRFHA*NIRAFF
Trigger: AAAGAAGGCTCTTATATTCAACGCATGAAACCTTGG...TCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTTAGGGTAGCCTGGGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TCAGCCGAGAACTCAAACGCTGACTTAGAAATGATGACTCCCATTGAATACACATTGCTCCATTGCTCCTaGTTAATGCCTGCAGTAGTA +
Preference number: 5 (lower is better)
Translates to: SAENSNADLEMMTPIEYTLLHCS*LMPAVV
Trigger: TACTACTGCAGGCATTAACAAGGAGCAATGGAGCAA...TGTGTATTCAATGGGAGTCATCATTTCTAAGTCAGCGTTTGAGTTCTCGGCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACTACAGGAACTGATTTaGCCAAGGTCTCTGCTCTCT +
Preference number: 5 (lower is better)
Translates to: LIKCVSTEVTECLKAISELQELI*PRSLLS
Trigger: AGAGAGCAGAGACCTTGGCAAAATCAGTTCCTGTAG...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031355.10
CDS-3UTR CAA 90 bp AGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACCAACATGGCAAACTCACCAAAAGGTCATCTaGTTCTTTCTTAGAATCCGT +
Preference number: 5 (lower is better)
Translates to: STEVTECLKAISEPTWQTHQKVI*FFLRIR
Trigger: ACGGATTCTAAGAAAGAACAAGATGACCTTTTGGTG...AGTTTGCCATGTTGGTTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS TCA 90 bp TTTTCTGCAATCTGTCCTGTAAGGAATGGAACATTGGCTGAGTTGTaGAGAAAATGTGTTACAGCAATAGGACAGTTGCTTAGCCAGGTA +
Preference number: 5 (lower is better)
Translates to: FSAICPVRNGTLAEL*RKCVTAIGQLLSQV
Trigger: TACCTGGCTAAGCAACTGTCCTATTGCTGTAACACATTTTCTTCACAACTCAGCCAATGTTCCATTCCTTACAGGACAGATTGCAGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 90 bp AAAGCAACAATTTTCTGGATTGCTCCATTGCTCCTTGTTAATGCCTaGAGTAGTAAGACGCCATCGTTGCGTATAATTTCTCTGGAATCT +
Preference number: 5 (lower is better)
Translates to: KATIFWIAPLLLVNA*SSKTPSLRIISLES
Trigger: AGATTCCAGAGAAATTATACGCAACGATGGCGTCTTACTACTGCAGGCATTAACAAGGAGCAATGGAGCAATCCAGAAAATTGTTGCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp AAGTACAGTCCTTTCTTTACAAGGATTAATCAGCCGAGAACTCAAACGCTGACTATCATCATCGTCTTCTaGGTCTCCAGATTCATCTTC +
Preference number: 5 (lower is better)
Translates to: KYSPFFTRINQPRTQTLTIIIVF*VSRFIF
Trigger: GAAGATGAATCTGGAGACCAAGAAGACGATGATGAT...AGTCAGCGTTTGAGTTCTCGGCTGATTAATCCTTGTAAAGAAAGGACTGTACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 90 bp TCCGAACGATCTGTTTGTAAAACATGGATAAGATGTTCCATAGCTTaGATTCCCACTTCTAAGCGGTATTTCTTAGAGAGTGATTTAAGG +
Preference number: 5 (lower is better)
Translates to: SERSVCKTWIRCSIA*IPTSKRYFLESDLR
Trigger: CCTTAAATCACTCTCTAAGAAATACCGCTTAGAAGTGGGAATCCAAGCTATGGAACATCTTATCCATGTTTTACAAACAGATCGTTCGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS-3UTR CAA 90 bp TTAATCAAATGTGTGAGTACTGAAGTCACAGAGTGTCTGAAAGCCATCAGTGAACAACAATTTTCTGGATaGCTCCATTGCTCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: LIKCVSTEVTECLKAISEQQFSG*LHCSLL
Trigger: TAACAAGGAGCAATGGAGCAATCCAGAAAATTGTTG...TTCACTGATGGCTTTCAGACACTCTGTGACTTCAGTACTCACACATTTGATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 90 bp GCATATGCTATTATTTCAGAATCCGAACGATCTGTTTGTAAAACATaGATAAGATGTTCCATAGCTTGGATTCCCACTTCTAAGCGGTAT +
Preference number: 5 (lower is better)
Translates to: AYAIISESERSVCKT*IRCSIAWIPTSKRY
Trigger: ATACCGCTTAGAAGTGGGAATCCAAGCTATGGAACATCTTATCCATGTTTTACAAACAGATCGTTCGGATTCTGAAATAATAGCATATGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 90 bp CACCGGAGGGTTGCCGATGCTGGTGGCCAGCTGAACCCTGAGCAGTaGCTCTTTCTGGGTGGCATTTCCCTGCAGCGCATGGGCGAGGGC +
Preference number: 6 (lower is better)
Translates to: HRRVADAGGQLNPEQ*LFLGGISLQRMGEG
Trigger: GCCCTCGCCCATGCGCTGCAGGGAAATGCCACCCAGAAAGAGCAACTGCTCAGGGTTCAGCTGGCCACCAGCATCGGCAACCCTCCGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS TCA 72 bp CCGGAGGGTTGCCGATGCTGGTGGCCAGCTGAACCCTaGGCAGTTGCTCTTTCTGGGTGGCATTTCCCTGCA +
Preference number: 6 (lower is better)
Translates to: PEGCRCWWPAEP*AVALSGWHFPA
Trigger: TGCAGGGAAATGCCACCCAGAAAGAGCAACTGCTCAGGGTTCAGCTGGCCACCAGCATCGGCAACCCTCCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 72 bp GTTGCCGATGCTGGTGGCCAGCTGAACCCTGAGCAGTaGCTCTTTCTGGGTGGCATTTCCCTGCAGCGCATG +
Preference number: 6 (lower is better)
Translates to: VADAGGQLNPEQ*LFLGGISLQRM
Trigger: CATGCGCTGCAGGGAAATGCCACCCAGAAAGAGCAACTGCTCAGGGTTCAGCTGGCCACCAGCATCGGCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 72 bp AGTTGCTCTTTCTGGGTGGCATTTCCCTGCAGCGCATaGGCGAGGGCCACAGCAGCACACCAGTTAGAGAGA +
Preference number: 6 (lower is better)
Translates to: SCSFWVAFPCSA*ARATAAHQLER
Trigger: TCTCTCTAACTGGTGTGCTGCTGTGGCCCTCGCCCATGCGCTGCAGGGAAATGCCACCCAGAAAGAGCAACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 72 bp AGCACGGCACATCGCAGCACAAACGGCTGCCGCTCGTaGACCATGGACATGAGCAGCACAACAATTGCCGGT +
Preference number: 6 (lower is better)
Translates to: STAHRSTNGCRS*TMDMSSTTIAG
Trigger: ACCGGCAATTGTTGTGCTGCTCATGTCCATGGTCAACGAGCGGCAGCCGTTTGTGCTGCGATGTGCCGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS TCA 72 bp AGTAACGTAGAGGAAGCTACGCGGTCACAGAGCTTCTaGATCGTCTCGGCTTCAGTGTGCTGGGGTCCGGCA +
Preference number: 6 (lower is better)
Translates to: SNVEEATRSQSF*IVSASVCWGPA
Trigger: TGCCGGACCCCAGCACACTGAAGCCGAGACGATTCAGAAGCTCTGTGACCGCGTAGCTTCCTCTACGTTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031355.10
ENSMUST00000201642.2
ENSMUST00000202155.2
CDS GCA 72 bp CTGACTAGGATGATCTGCTGCACGGGAGGCCCTAGCTaGTTTAAAAGAGAAGTCAGGAGTCTCACGCCAGGC +
Preference number: 6 (lower is better)
Translates to: LTRMICCTGGPS*FKREVRSLTPG
Trigger: GCCTGGCGTGAGACTCCTGACTTCTCTTTTAAAGCAGCTAGGGCCTCCCGTGCAGCAGATCATCCTAGTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 72 bp GCAGGAATCCCAGTAGCCATCAGGATAGTGCAAAGCTaGTGGAGTAGCCCACACTGGAACATGGCCTTCTGG +
Preference number: 6 (lower is better)
Translates to: AGIPVAIRIVQS*WSSPHWNMAFW
Trigger: CCAGAAGGCCATGTTCCAGTGTGGGCTACTCCAGCAGCTTTGCACTATCCTGATGGCTACTGGGATTCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 72 bp ATCAGGATAGTGCAAAGCTGCTGGAGTAGCCCACACTaGAACATGGCCTTCTGGCAGCTACTGGTAGCACCG +
Preference number: 6 (lower is better)
Translates to: IRIVQSCWSSPH*NMAFWQLLVAP
Trigger: CGGTGCTACCAGTAGCTGCCAGAAGGCCATGTTCCAGTGTGGGCTACTCCAGCAGCTTTGCACTATCCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 72 bp TGTATTTTGCTTCCCTGGGAAAGAATGTTGGTGCATTaGTGCAGGAGCGACACCGGAGGGTTGCCGATGCTG +
Preference number: 6 (lower is better)
Translates to: CILLPWERMLVH*CRSDTGGLPML
Trigger: CAGCATCGGCAACCCTCCGGTGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 72 bp CTGTATTTTGCTTCCCTGGGAAAGAATGTTGGTGCATaGCTGCAGGAGCGACACCGGAGGGTTGCCGATGCT +
Preference number: 6 (lower is better)
Translates to: LYFASLGKNVGA*LQERHRRVADA
Trigger: AGCATCGGCAACCCTCCGGTGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 72 bp CTTGAAACACCCATGGGGCTGACTAGGATGATCTGCTaGACGGGAGGCCCTAGCTGCTTTAAAAGAGAAGTC +
Preference number: 6 (lower is better)
Translates to: LETPMGLTRMIC*TGGPSCFKREV
Trigger: GACTTCTCTTTTAAAGCAGCTAGGGCCTCCCGTGCAGCAGATCATCCTAGTCAGCCCCATGGGTGTTTCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 72 bp CTCTTGTCTGTATTTTGCTTCCCTGGGAAAGAATGTTaGTGCATTGCTGCAGGAGCGACACCGGAGGGTTGC +
Preference number: 6 (lower is better)
Translates to: LLSVFCFPGKEC*CIAAGATPEGC
Trigger: GCAACCCTCCGGTGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAGACAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS TCA 72 bp TGTAGAAAACAAACCTCCGCAGAGCAGCTGACCGGCTaGGACGGAGTTACCTGTTGCATCAATAGTGGAAGG +
Preference number: 6 (lower is better)
Translates to: CRKQTSAEQLTG*DGVTCCINSGR
Trigger: CCTTCCACTATTGATGCAACAGGTAACTCCGTCTCAGCCGGTCAGCTGCTCTGCGGAGGTTTGTTTTCTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 72 bp ACTCTTGTCTGTATTTTGCTTCCCTGGGAAAGAATGTaGGTGCATTGCTGCAGGAGCGACACCGGAGGGTTG +
Preference number: 6 (lower is better)
Translates to: TLVCILLPWERM*VHCCRSDTGGL
Trigger: CAACCCTCCGGTGTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAGACAAGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS TCA 72 bp AGAGAGTCTGTAGAAAACAAACCTCCGCAGAGCAGCTaGCCGGCTGAGACGGAGTTACCTGTTGCATCAATA +
Preference number: 6 (lower is better)
Translates to: RESVENKPPQSS*PAETELPVASI
Trigger: TATTGATGCAACAGGTAACTCCGTCTCAGCCGGTCAGCTGCTCTGCGGAGGTTTGTTTTCTACAGACTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 72 bp AATCTTGAAACACCCATGGGGCTGACTAGGATGATCTaGTGCACGGGAGGCCCTAGCTGCTTTAAAAGAGAA +
Preference number: 6 (lower is better)
Translates to: NLETPMGLTRMI*CTGGPSCFKRE
Trigger: TTCTCTTTTAAAGCAGCTAGGGCCTCCCGTGCAGCAGATCATCCTAGTCAGCCCCATGGGTGTTTCAAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 90 bp AGCCAGGTACAGAGCAACATTAACAACCCGACTCTTGTCTGTATTTaGCTTCCCTGGGAAAGAATGTTGGTGCATTGCTGCAGGAGCGAC +
Preference number: 6 (lower is better)
Translates to: SQVQSNINNPTLVCI*LPWERMLVHCCRSD
Trigger: GTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAGACAAGAGTCGGGTTGTTAATGTTGCTCTGTACCTGGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 72 bp ATGCCCAAAAGAAGGGCACATAAGCCTTGGACCAACTaGTCTTCTTCTCCGAGATTTTCTGCAATCTGTCCT +
Preference number: 6 (lower is better)
Translates to: MPKRRAHKPWTN*SSSPRFSAICP
Trigger: AGGACAGATTGCAGAAAATCTCGGAGAAGAAGAGCAGTTGGTCCAAGGCTTATGTGCCCTTCTTTTGGGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 72 bp CCAGTACCCGCACAAGCTGGAGCATTAAATGTAGATTaGTCACTTTCTGTGCTGACCAACCAGAGTTTTCCT +
Preference number: 6 (lower is better)
Translates to: PVPAQAGALNVD*SLSVLTNQSFP
Trigger: AGGAAAACTCTGGTTGGTCAGCACAGAAAGTGACCAATCTACATTTAATGCTCCAGCTTGTGCGGGTACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CCA 72 bp ATTAACAACCCGACTCTTGTCTGTATTTTGCTTCCCTaGGAAAGAATGTTGGTGCATTGCTGCAGGAGCGAC +
Preference number: 6 (lower is better)
Translates to: INNPTLVCILLP*ERMLVHCCRSD
Trigger: GTCGCTCCTGCAGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAGACAAGAGTCGGGTTGTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 72 bp ACCAGTACCCGCACAAGCTGGAGCATTAAATGTAGATaGGTCACTTTCTGTGCTGACCAACCAGAGTTTTCC +
Preference number: 6 (lower is better)
Translates to: TSTRTSWSIKCR*VTFCADQPEFS
Trigger: GGAAAACTCTGGTTGGTCAGCACAGAAAGTGACCAATCTACATTTAATGCTCCAGCTTGTGCGGGTACTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 90 bp TGTTGCATCAATAGTGGAAGGCAGAAGAGTGGCCACGATCTCTCCTaGTCCTTTCTCGTTTTTATACAGGAAGCACTGGAAACAGTAGAG +
Preference number: 6 (lower is better)
Translates to: CCINSGRQKSGHDLS*SFLVFIQEALETVE
Trigger: CTCTACTGTTTCCAGTGCTTCCTGTATAAAAACGAGAAAGGACAAGGAGAGATCGTGGCCACTCTTCTGCCTTCCACTATTGATGCAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 90 bp GACAGTTGCTTAGCCAGGTACAGAGCAACATTAACAACCCGACTCTaGTCTGTATTTTGCTTCCCTGGGAAAGAATGTTGGTGCATTGCT +
Preference number: 6 (lower is better)
Translates to: DSCLARYRATLTTRL*SVFCFPGKECWCIA
Trigger: AGCAATGCACCAACATTCTTTCCCAGGGAAGCAAAATACAGACAAGAGTCGGGTTGTTAATGTTGCTCTGTACCTGGCTAAGCAACTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 72 bp AATAGTGGAAGGCAGAAGAGTGGCCACGATCTCTCCTaGTCCTTTCTCGTTTTTATACAGGAAGCACTGGAA +
Preference number: 6 (lower is better)
Translates to: NSGRQKSGHDLS*SFLVFIQEALE
Trigger: TTCCAGTGCTTCCTGTATAAAAACGAGAAAGGACAAGGAGAGATCGTGGCCACTCTTCTGCCTTCCACTATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS GCA 72 bp ATTTTCTGGATTGCTCCATTGCTCCTTGTTAATGCCTaGAGTAGTAAGACGCCATCGTTGCGTATAATTTCT +
Preference number: 6 (lower is better)
Translates to: IFWIAPLLLVNA*SSKTPSLRIIS
Trigger: AGAAATTATACGCAACGATGGCGTCTTACTACTGCAGGCATTAACAAGGAGCAATGGAGCAATCCAGAAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2
CDS CAA 72 bp TCACATGCTCACTCTCTCCTTCTACAGGAACTGATTTaGCCAAATTTTCAATCAATGAGTCCTTTTCAGCTA +
Preference number: 6 (lower is better)
Translates to: SHAHSLLLQELI*PNFQSMSPFQL
Trigger: TAGCTGAAAAGGACTCATTGATTGAAAATTTGGCAAAATCAGTTCCTGTAGAAGGAGAGAGTGAGCATGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202155.2
CDS CCA 72 bp TCTGTTTGTAAAACATGGATAAGATGTTCCATAGCTTaGATTCCCACTTCTAAGCGGTATTTCTTAGAGAGT +
Preference number: 6 (lower is better)
Translates to: SVCKTWIRCSIA*IPTSKRYFLES
Trigger: ACTCTCTAAGAAATACCGCTTAGAAGTGGGAATCCAAGCTATGGAACATCTTATCCATGTTTTACAAACAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031355.10
ENSMUST00000202155.2