Pregenerated sensors for USE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002395

Ensembl transcript IDs: ENSMUST00000019169.8, ENSMUST00000110053.9, ENSMUST00000110054.8, ENSMUST00000139541.8

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CGGGCCAGGCCTAGCATCTCCTCAGCCAGCTTTTCCTGGAGGCCCTaGTGCCTCTGGAGGACGAGGTCTAGCTCGGATGCTGACTGCCTC	+
Preference number: 5 (lower is better) Translates to: RARPSISSASFSWRP*CLWRTRSSSDADCL Trigger: GAGGCAGTCAGCATCCGAGCTAGACCTCGTCCTCCAGAGGCACCAGGGCCTCCAGGAAAAGCTGGCTGAGGAGATGCTAGGCCTGGCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS GCA 90 bp	AGGCCCTGGTGCCTCTGGAGGACGAGGTCTAGCTCGGATGCTGACTaGCTCTCATCTGCAGGTCTGGACCCCTTCGCAGCTCGTTTCCTC	+
Preference number: 5 (lower is better) Translates to: RPWCLWRTRSSSDAD*LSSAGLDPFAARFL Trigger: GAGGAAACGAGCTGCGAAGGGGTCCAGACCTGCAGATGAGAGGCAGTCAGCATCCGAGCTAGACCTCGTCCTCCAGAGGCACCAGGGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS CCA 90 bp	CCTAGCATCTCCTCAGCCAGCTTTTCCTGGAGGCCCTGGTGCCTCTaGAGGACGAGGTCTAGCTCGGATGCTGACTGCCTCTCATCTGCA	+
Preference number: 5 (lower is better) Translates to: PSISSASFSWRPWCL*RTRSSSDADCLSSA Trigger: TGCAGATGAGAGGCAGTCAGCATCCGAGCTAGACCTCGTCCTCCAGAGGCACCAGGGCCTCCAGGAAAAGCTGGCTGAGGAGATGCTAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS CCA 90 bp	GGACGAGGTCTAGCTCGGATGCTGACTGCCTCTCATCTGCAGGTCTaGACCCCTTCGCAGCTCGTTTCCTCATGTCCACCTCACATTCTC	+
Preference number: 5 (lower is better) Translates to: GRGLARMLTASHLQV*TPSQLVSSCPPHIL Trigger: GAGAATGTGAGGTGGACATGAGGAAACGAGCTGCGAAGGGGTCCAGACCTGCAGATGAGAGGCAGTCAGCATCCGAGCTAGACCTCGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS TCA 90 bp	CACGAAGCACACGACAATGAGCATGGCCCACAGCAGCCAGTTCACTaGCTTCTGTGCATGCTGCTCCAATCTCTCCGACTCCAGCTTCAG	+
Preference number: 5 (lower is better) Translates to: HEAHDNEHGPQQPVH*LLCMLLQSLRLQLQ Trigger: CTGAAGCTGGAGTCGGAGAGATTGGAGCAGCATGCACAGAAGTCAGTGAACTGGCTGCTGTGGGCCATGCTCATTGTCGTGTGCTTCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS GCA 90 bp	ACCCACATACTTCTCCAGTCGCCACTCGTCCGGTTCTCGTTTTTCTaGCGCCATCGACTCACAGCGACAAAGCAGCCGTACCAGGTTCAA	+
Preference number: 5 (lower is better) Translates to: THILLQSPLVRFSFF*RHRLTATKQPYQVQ Trigger: TTGAACCTGGTACGGCTGCTTTGTCGCTGTGAGTCGATGGCGGCAGAAAAACGAGAACCGGACGAGTGGCGACTGGAGAAGTATGTGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8 ENSMUST00000139541.8
CDS TCA 90 bp	GCCCTTCAGAAAGTCCACTTTGCGGGAGTACTCGCTGATCACTTCTaGGGCCGGTTTACTTGCTTGAACTTTCAGGGCCTGCAGCATGTC	+
Preference number: 5 (lower is better) Translates to: ALQKVHFAGVLADHF*GRFTCLNFQGLQHV Trigger: GACATGCTGCAGGCCCTGAAAGTTCAAGCAAGTAAACCGGCCTCAGAAGTGATCAGCGAGTACTCCCGCAAAGTGGACTTTCTGAAGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS TCA 90 bp	CCTGCAGCATGCCCTTCAGAAAGTCCACTTTGCGGGAGTACTCGCTaGTCACTTCTGAGGCCGGTTTACTTGCTTGAACTTTCAGGGCCT	+
Preference number: 5 (lower is better) Translates to: PAACPSESPLCGSTR*SLLRPVYLLELSGP Trigger: AGGCCCTGAAAGTTCAAGCAAGTAAACCGGCCTCAGAAGTGATCAGCGAGTACTCCCGCAAAGTGGACTTTCTGAAGGGCATGCTGCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS GCA 90 bp	TGGTTAGCTAGAGCTTTTTCAGAGGAGGAGGTCAACTTCTCGGCCTaGAGCATGCCCTTCAGAAAGTCCACTTTGCGGGAGTACTCGCTG	+
Preference number: 5 (lower is better) Translates to: WLARAFSEEEVNFSA*SMPFRKSTLREYSL Trigger: CAGCGAGTACTCCCGCAAAGTGGACTTTCTGAAGGGCATGCTGCAGGCCGAGAAGTTGACCTCCTCCTCTGAAAAAGCTCTAGCTAACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS CAA 90 bp	GCCCTAGACTGCAAATGTACAGTCTTGGTGGCAGGCACCCGCTCCTaGGCTGTGGTGGGCACGCGGCCAGGAGCCAGGAACTGGTTAGCT	+
Preference number: 6 (lower is better) Translates to: ALDCKCTVLVAGTRS*AVVGTRPGARNWLA Trigger: AGCTAACCAGTTCCTGGCTCCTGGCCGCGTGCCCACCACAGCCAAGGAGCGGGTGCCTGCCACCAAGACTGTACATTTGCAGTCTAGGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS GCA 72 bp	TGCCTCTGGAGGACGAGGTCTAGCTCGGATGCTGACTaGCTCTCATCTGCAGGTCTGGACCCCTTCGCAGCT	+
Preference number: 6 (lower is better) Translates to: CLWRTRSSSDAD*LSSAGLDPFAA Trigger: AGCTGCGAAGGGGTCCAGACCTGCAGATGAGAGGCAGTCAGCATCCGAGCTAGACCTCGTCCTCCAGAGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS GCA 72 bp	CTTCTCCAGTCGCCACTCGTCCGGTTCTCGTTTTTCTaGCGCCATCGACTCACAGCGACAAAGCAGCCGTAC	+
Preference number: 6 (lower is better) Translates to: LLQSPLVRFSFF*RHRLTATKQPY Trigger: GTACGGCTGCTTTGTCGCTGTGAGTCGATGGCGGCAGAAAAACGAGAACCGGACGAGTGGCGACTGGAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8 ENSMUST00000139541.8
CDS CAA 72 bp	TTCTCGGCCTGCAGCATGCCCTTCAGAAAGTCCACTTaGCGGGAGTACTCGCTGATCACTTCTGAGGCCGGT	+
Preference number: 6 (lower is better) Translates to: FSACSMPFRKST*REYSLITSEAG Trigger: ACCGGCCTCAGAAGTGATCAGCGAGTACTCCCGCAAAGTGGACTTTCTGAAGGGCATGCTGCAGGCCGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS TCA 72 bp	CACGACAATGAGCATGGCCCACAGCAGCCAGTTCACTaGCTTCTGTGCATGCTGCTCCAATCTCTCCGACTC	+
Preference number: 6 (lower is better) Translates to: HDNEHGPQQPVH*LLCMLLQSLRL Trigger: GAGTCGGAGAGATTGGAGCAGCATGCACAGAAGTCAGTGAACTGGCTGCTGTGGGCCATGCTCATTGTCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS GCA 72 bp	TTTCAGAGGAGGAGGTCAACTTCTCGGCCTGCAGCATaGCCTTCAGAAAGTCCACTTTGCGGGAGTACTCGC	+
Preference number: 6 (lower is better) Translates to: FQRRRSTSRPAA*PSESPLCGSTR Trigger: GCGAGTACTCCCGCAAAGTGGACTTTCTGAAGGGCATGCTGCAGGCCGAGAAGTTGACCTCCTCCTCTGAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS CAA 90 bp	GAGGTCAACTTCTCGGCCTGCAGCATGCCCTTCAGAAAGTCCACTTaGCGGGAGTACTCGCTGATCACTTCTGAGGCCGGTTTACTTGCT	+
Preference number: 6 (lower is better) Translates to: EVNFSACSMPFRKST*REYSLITSEAGLLA Trigger: AGCAAGTAAACCGGCCTCAGAAGTGATCAGCGAGTACTCCCGCAAAGTGGACTTTCTGAAGGGCATGCTGCAGGCCGAGAAGTTGACCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8
CDS TCA 72 bp	TGCCCTTCAGAAAGTCCACTTTGCGGGAGTACTCGCTaGTCACTTCTGAGGCCGGTTTACTTGCTTGAACTT	+
Preference number: 6 (lower is better) Translates to: CPSESPLCGSTR*SLLRPVYLLEL Trigger: AAGTTCAAGCAAGTAAACCGGCCTCAGAAGTGATCAGCGAGTACTCCCGCAAAGTGGACTTTCTGAAGGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000019169.8 ENSMUST00000110053.9 ENSMUST00000110054.8

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