Pregenerated sensors for USB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031792Ensembl transcript IDs: ENSMUST00000034245.16, ENSMUST00000126180.2, ENSMUST00000213059.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGTCCTCCTTCGCTCACACGGTATGTAGATGTGGGTGGCCCAGTTaGCCCGCTCATGGGGAAAGGTTCGGATTCGACCGCCATGCTTTG | + |
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Preference number: 1 (lower is better) Translates to: KSSFAHTVCRCGWPS*PAHGERFGFDRHAL Trigger: CAAAGCATGGCGGTCGAATCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTGTGAGCGAAGGAGGACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213059.2 |
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| 3UTR TCA 90 bp | CCCATGACAACTAGAAAGGTTTGGCTCTTTGCCCTGGTAGGAGCTTaGTGGAAAATAAATTCTCCAATGCCTCCCTGGCCCTCTCCCCAC | + |
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Preference number: 1 (lower is better) Translates to: PMTTRKVWLFALVGA*WKINSPMPPWPSPH Trigger: GTGGGGAGAGGGCCAGGGAGGCATTGGAGAATTTATTTTCCATCAAGCTCCTACCAGGGCAAAGAGCCAAACCTTTCTAGTTGTCATGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| 3UTR-3UTR CCA 90 bp | AAGTGGGAGGAAGGAATGAAGAAAACTGCTGCTGACCACAAATTAGCACCCTGTGGGACTGAGCGTGGGTaGGCTCCCCAGCCAGGCTCA | + |
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Preference number: 2 (lower is better) Translates to: KWEEGMKKTAADHKLAPCGTERG*APQPGS Trigger: TGAGCCTGGCTGGGGAGCCCACCCACGCTCAGTCCC...ACAGGGTGCTAATTTGTGGTCAGCAGCAGTTTTCTTCATTCCTTCCTCCCACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| 3UTR-3UTR TCA 90 bp | CTTCATCCATCACTAGAAATCCCCATGACAACTAGAAAGGTTTGGCTCTTTGCCCCTGTGCCCTGGCCCTaGAATGACCTCTCCTGGCAC | + |
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Preference number: 2 (lower is better) Translates to: LHPSLEIPMTTRKVWLFAPVPWP*NDLSWH Trigger: GTGCCAGGAGAGGTCATTTCAGGGCCAGGGCACAGG...GGCAAAGAGCCAAACCTTTCTAGTTGTCATGGGGATTTCTAGTGATGGATGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| 3UTR-3UTR CCA 90 bp | TGGCTGGGTAAGTGGGAGGAAGGAATGAAGAAAACTGCTGCTGACCACAAATTAATTAGGACTCCTGGCTaGGGCATCCCACAGATGGCA | + |
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Preference number: 2 (lower is better) Translates to: WLGKWEEGMKKTAADHKLIRTPG*GIPQMA Trigger: TGCCATCTGTGGGATGCCCCAGCCAGGAGTCCTAAT...TAATTTGTGGTCAGCAGCAGTTTTCTTCATTCCTTCCTCCCACTTACCCAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| 3UTR-3UTR CCA 90 bp | AAGTGGGAGGAAGGAATGAAGAAAACTGCTGCTGACCACAAATTAGCACCCTGTTATAGATTACTGCAGTaGAGAGACCTCGGTGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: KWEEGMKKTAADHKLAPCYRLLQ*RDLGGD Trigger: GTCCCCACCGAGGTCTCTCCACTGCAGTAATCTATA...ACAGGGTGCTAATTTGTGGTCAGCAGCAGTTTTCTTCATTCCTTCCTCCCACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| 3UTR-3UTR TCA 90 bp | ATATTTCTTCATCCATCACTAGAAATCCCCATGACAACTAGAAAGGTTTGGCTCGCTGCCCTCTACTGGTaGTTTCTGGAAATGAGCACA | + |
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Preference number: 2 (lower is better) Translates to: IFLHPSLEIPMTTRKVWLAALYW*FLEMST Trigger: TGTGCTCATTTCCAGAAATCACCAGTAGAGGGCAGC...GAGCCAAACCTTTCTAGTTGTCATGGGGATTTCTAGTGATGGATGAAGAAATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| 3UTR CCA 72 bp | TGCAGTGGAGAGACCTCGGTGGGGACTGAGCGTGGGTaGGCTCCCCAGCCAGGCTCATTTGACTTTCCTAAG | + |
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Preference number: 3 (lower is better) Translates to: CSGETSVGTERG*APQPGSFDFPK Trigger: CTTAGGAAAGTCAAATGAGCCTGGCTGGGGAGCCCACCCACGCTCAGTCCCCACCGAGGTCTCTCCACTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| 3UTR GCA 72 bp | CTCATGGGGAAAGGTTCGGATTCGACCGCCATGCTTTaGACTGTCGTCCTCAGGCCCTTCCTCTGTGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: LMGKGSDSTAML*TVVLRPFLCAG Trigger: CCCAGCACAGAGGAAGGGCCTGAGGACGACAGTGCAAAGCATGGCGGTCGAATCCGAACCTTTCCCCATGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213059.2 |
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| 3UTR GCA 72 bp | TTCGCTCACACGGTATGTAGATGTGGGTGGCCCAGTTaGCCCGCTCATGGGGAAAGGTTCGGATTCGACCGC | + |
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Preference number: 3 (lower is better) Translates to: FAHTVCRCGWPS*PAHGERFGFDR Trigger: GCGGTCGAATCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTGTGAGCGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213059.2 |
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| 3UTR CCA 72 bp | AAGTCCTCCTTCGCTCACACGGTATGTAGATGTGGGTaGCCCAGTTGCCCCGCTCATGGGGAAAGGTTCGGA | + |
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Preference number: 3 (lower is better) Translates to: KSSFAHTVCRCG*PSCPAHGERFG Trigger: TCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTGTGAGCGAAGGAGGACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213059.2 |
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| 3UTR TCA 72 bp | ACTAGAAAGGTTTGGCTCTTTGCCCTGGTAGGAGCTTaGTGGAAAATAAATTCTCCAATGCCTCCCTGGCCC | + |
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Preference number: 3 (lower is better) Translates to: TRKVWLFALVGA*WKINSPMPPWP Trigger: GGGCCAGGGAGGCATTGGAGAATTTATTTTCCATCAAGCTCCTACCAGGGCAAAGAGCCAAACCTTTCTAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR GCA 90 bp | CCTTCGCTCACACGGTATGTAGATGTGGGTGGCCCAGTTGCCCCGCTCATGGGGCCTCTGAACCGCTGCTaGTGTAGCCCACCAGGGGCG | + |
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Preference number: 4 (lower is better) Translates to: PSLTRYVDVGGPVAPLMGPLNRC*CSPPGA Trigger: CGCCCCTGGTGGGCTACAGCAGCAGCGGTTCAGAGG...CCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTGTGAGCGAAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000213059.2 |
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| CDS-3UTR GCA 90 bp | ATGTGGGTGGCCCAGTTGCCCCGCTCATGGGGAAAGGTTCGGATTCGACCGCCACATCCTCTGAACCGCTaGTGCTGTAGCCCACCAGGG | + |
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Preference number: 4 (lower is better) Translates to: MWVAQLPRSWGKVRIRPPHPLNR*CCSPPG Trigger: CCCTGGTGGGCTACAGCAGCAGCGGTTCAGAGGATG...TGGCGGTCGAATCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213059.2 |
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| CDS-3UTR CCA 90 bp | GGGAAAGTAGGGGTCATGGGTGTTGGAGGCCTGGCCAGCAGCCATAGCCAAGCCCGGAGAACCACGCTCTaGGACAGGCTGACGTGGAAC | + |
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Preference number: 4 (lower is better) Translates to: GKVGVMGVGGLASSHSQARRTTL*DRLTWN Trigger: GTTCCACGTCAGCCTGTCCCAGAGCGTGGTTCTCCG...GGCTTGGCTATGGCTGCTGGCCAGGCCTCCAACACCCATGACCCCTACTTTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR TCA 90 bp | GGGAAAGTAGGGGTCATGGGTGTTGGAGGCCTGGCCAGCAGCCATAGCCAAGCCGGCTCTGTCCACCTCTaGAACCAGGTCCAGGAACTG | + |
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Preference number: 4 (lower is better) Translates to: GKVGVMGVGGLASSHSQAGSVHL*NQVQEL Trigger: CAGTTCCTGGACCTGGTTTCAGAGGTGGACAGAGCC...GGCTTGGCTATGGCTGCTGGCCAGGCCTCCAACACCCATGACCCCTACTTTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR TCA 90 bp | GGGAAAGTAGGGGTCATGGGTGTTGGAGGCCTGGCCAGCAGCCATAGCCAAGCCCACACCAGGCCAGGCTaGCATGAAATGAGGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: GKVGVMGVGGLASSHSQAHTRPG*HEMRGP Trigger: AGGACCCCTCATTTCATGTCAGCCTGGCCTGGTGTG...GGCTTGGCTATGGCTGCTGGCCAGGCCTCCAACACCCATGACCCCTACTTTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR GCA 90 bp | AGAGAGGCTGACAGACAACGGAAGCCCCAGTCTGACACAGGTGGGTCAGAACACCCTCTGAACCGCTGCTaGTGTAGCCCACCAGGGGCG | + |
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Preference number: 4 (lower is better) Translates to: READRQRKPQSDTGGSEHPLNRC*CSPPGA Trigger: CGCCCCTGGTGGGCTACAGCAGCAGCGGTTCAGAGG...GTGTTCTGACCCACCTGTGTCAGACTGGGGCTTCCGTTGTCTGTCAGCCTCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| 3UTR CAA 72 bp | GCTCATGGGGAAAGGTTCGGATTCGACCGCCATGCTTaGCACTGTCGTCCTCAGGCCCTTCCTCTGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: AHGERFGFDRHA*HCRPQALPLCW Trigger: CCAGCACAGAGGAAGGGCCTGAGGACGACAGTGCAAAGCATGGCGGTCGAATCCGAACCTTTCCCCATGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000213059.2 |
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| CDS-3UTR CCA 90 bp | AAAGTAGGGGTCATGGGTGTTGGAGGCCTGGCCAGCAGCCATAGCCAAGCCAAATGGGACAGGCTGACGTaGAACTCCTCCATCAGTACC | + |
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Preference number: 4 (lower is better) Translates to: KVGVMGVGGLASSHSQAKWDRLT*NSSIST Trigger: GGTACTGATGGAGGAGTTCCACGTCAGCCTGTCCCA...TTTGGCTTGGCTATGGCTGCTGGCCAGGCCTCCAACACCCATGACCCCTACTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR CCA 90 bp | GGGAAAGTAGGGGTCATGGGTGTTGGAGGCCTGGCCAGCAGCCATAGCCAAGCCGGTCAAATTCCTTCATaGCTCTGTCCACCTCTGAAA | + |
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Preference number: 4 (lower is better) Translates to: GKVGVMGVGGLASSHSQAGQIPS*LCPPLK Trigger: TTTCAGAGGTGGACAGAGCCATGAAGGAATTTGACC...GGCTTGGCTATGGCTGCTGGCCAGGCCTCCAACACCCATGACCCCTACTTTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR GCA 90 bp | CCAGGCACCTGGCTGGGTAAGTGGGAGGAAGGAATGAAGAAAACTGCTGCTGACATTTCCTGTAGTTCCTaGAGGCACTGTCCCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PGTWLGKWEEGMKKTAADISCSS*RHCPSS Trigger: GCTGGAGGGACAGTGCCTGCAGGAACTACAGGAAAT...GTCAGCAGCAGTTTTCTTCATTCCTTCCTCCCACTTACCCAGCCAGGTGCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR CCA 90 bp | GAAAGTGGAGGAAGAATTAGAGGTCCGGGCTGCCCTCTACTGGTGATTTCTGGAGTATGTAGATGTGGGTaGCCCAGTTGCCCCGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: ESGGRIRGPGCPLLVISGVCRCG*PSCPAH Trigger: ATGAGCGGGGCAACTGGGCCACCCACATCTACATAC...TCCAGAAATCACCAGTAGAGGGCAGCCCGGACCTCTAATTCTTCCTCCACTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR TCA 90 bp | CTTCATCCATCACTAGAAATCCCCATGACAACTAGAAAGGTTTGGCTCTTTGCCGGGAGGATCCAGTGGTaGCGGAGAACCACGCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LHPSLEIPMTTRKVWLFAGRIQW*RRTTLW Trigger: CCAGAGCGTGGTTCTCCGTCACCACTGGATCCTCCC...GGCAAAGAGCCAAACCTTTCTAGTTGTCATGGGGATTTCTAGTGATGGATGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR GCA 90 bp | AAAAAGTGGTTGACGGCCAAGGGCATCAATATAGATTACTGCAGTGGAGAGACCCATCCTCTGAACCGCTaGTGCTGTAGCCCACCAGGG | + |
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Preference number: 4 (lower is better) Translates to: KKWLTAKGINIDYCSGETHPLNR*CCSPPG Trigger: CCCTGGTGGGCTACAGCAGCAGCGGTTCAGAGGATG...GGTCTCTCCACTGCAGTAATCTATATTGATGCCCTTGGCCGTCAACCACTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR GCA 90 bp | CTACTGGTGATTTCTGGAAATGAGCACATTACAGTAGCAGCCTACCAACCTAAGTGTGGGTGGCCCAGTTaGCCCGCTCATGGGGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: LLVISGNEHITVAAYQPKCGWPS*PAHGER Trigger: CCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACA...CTTAGGTTGGTAGGCTGCTACTGTAATGTGCTCATTTCCAGAAATCACCAGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR CCA 90 bp | GAAAGTGGAGGAAGAATTAGAGGTCCGGGCTGCCCTCTACTGGTGATTTCTGGACACTGTCCCTCCAGCTaGAGACTAGCATCACCTACA | + |
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Preference number: 4 (lower is better) Translates to: ESGGRIRGPGCPLLVISGHCPSS*RLASPT Trigger: TGTAGGTGATGCTAGTCTCCAGCTGGAGGGACAGTG...TCCAGAAATCACCAGTAGAGGGCAGCCCGGACCTCTAATTCTTCCTCCACTTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR TCA 90 bp | CTTCATCCATCACTAGAAATCCCCATGACAACTAGAAAGGTTTGGCTCTTTGCCGAACTGGGCATGCCCTaGACTGACCTCCAGCCCGAT | + |
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Preference number: 4 (lower is better) Translates to: LHPSLEIPMTTRKVWLFAELGMP*TDLQPD Trigger: ATCGGGCTGGAGGTCAGTTCAGGGCATGCCCAGTTC...GGCAAAGAGCCAAACCTTTCTAGTTGTCATGGGGATTTCTAGTGATGGATGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR CCA 90 bp | CTACTGGTGATTTCTGGAAATGAGCACATTACAGTAGCAGCCTACCAACCTAAGACCAGGTCCAGGAACTaGGCATGCCCTGAACTGACC | + |
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Preference number: 4 (lower is better) Translates to: LLVISGNEHITVAAYQPKTRSRN*ACPELT Trigger: GGTCAGTTCAGGGCATGCCCAGTTCCTGGACCTGGT...CTTAGGTTGGTAGGCTGCTACTGTAATGTGCTCATTTCCAGAAATCACCAGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR TCA 90 bp | TGGCTGGGTAAGTGGGAGGAAGGAATGAAGAAAACTGCTGCTGACCACAAATTACAGGCTGACATGAAATaGGGGGTCCTGGTAGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: WLGKWEEGMKKTAADHKLQADMK*GVLVES Trigger: ACTTTCTACCAGGACCCCTCATTTCATGTCAGCCTG...TAATTTGTGGTCAGCAGCAGTTTTCTTCATTCCTTCCTCCCACTTACCCAGCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR GCA 90 bp | ATATTTCTTCATCCATCACTAGAAATCCCCATGACAACTAGAAAGGTTTGGCTCCGGTCCTTGAGCACCTaGACAAAGGGGAGGATCCAG | + |
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Preference number: 4 (lower is better) Translates to: IFLHPSLEIPMTTRKVWLRSLST*TKGRIQ Trigger: CTGGATCCTCCCCTTTGTGCAGGTGCTCAAGGACCG...GAGCCAAACCTTTCTAGTTGTCATGGGGATTTCTAGTGATGGATGAAGAAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS CCA 90 bp | AGCACACTGTCAGGCACTGGAAGCTTCTCACTGGGAACGGGGTTCTaGCCACCGGTTTGCTCCGCCCCGCGGCGACAGCCTCCGCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: STLSGTGSFSLGTGF*PPVCSAPRRQPPLH Trigger: ATGAAGCGGAGGCTGTCGCCGCGGGGCGGAGCAAACCGGTGGCCAGAACCCCGTTCCCAGTGAGAAGCTTCCAGTGCCTGACAGTGTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000213059.2 |
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| CDS CCA 90 bp | AGCACACTGTCAGGCACTGGAAGCTTCTCACTGGGAACGGGGTTCTaGCCACAACGGTGGAAGCCAGTACCCGGTTTGCTCCGCCCCGCG | + |
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Preference number: 5 (lower is better) Translates to: STLSGTGSFSLGTGF*PQRWKPVPGLLRPA Trigger: CGCGGGGCGGAGCAAACCGGGTACTGGCTTCCACCGTTGTGGCCAGAACCCCGTTCCCAGTGAGAAGCTTCCAGTGCCTGACAGTGTGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS TCA 90 bp | GCCATGCGGTCCTTGAGCACCTGCACAAAGGGGAGGATCCAGTGGTaGCGGAGAACCACGCTCTGGGACAGGCTGACGTGGAACTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: AMRSLSTCTKGRIQW*RRTTLWDRLTWNSS Trigger: GGAGGAGTTCCACGTCAGCCTGTCCCAGAGCGTGGTTCTCCGTCACCACTGGATCCTCCCCTTTGTGCAGGTGCTCAAGGACCGCATGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS CCA 90 bp | GATCCCGGAAGTCCTCCTTCGCCTCATACGGTATGTAGATGTGGGTaGCCCAGTTGCCCCGCTCATGGGGAAAGGTTCGGATTCGACCGC | + |
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Preference number: 5 (lower is better) Translates to: DPGSPPSPHTVCRCG*PSCPAHGERFGFDR Trigger: GCGGTCGAATCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTATGAGGCGAAGGAGGACTTCCGGGATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS TCA 90 bp | CTGACGTGGAACTCCTCCATCAGTACCAGTCTCGGTACAAACATCTaGGCTCGGGGCAGCAACGCGTCAAGCAGATCCCGGAAGTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LTWNSSISTSLGTNI*ARGSNASSRSRKSS Trigger: GGAGGACTTCCGGGATCTGCTTGACGCGTTGCTGCCCCGAGCTCAGATGTTTGTACCGAGACTGGTACTGATGGAGGAGTTCCACGTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS GCA 90 bp | AGTCCTCCTTCGCCTCATACGGTATGTAGATGTGGGTGGCCCAGTTaGCCCGCTCATGGGGAAAGGTTCGGATTCGACCGCCATGCTTTG | + |
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Preference number: 5 (lower is better) Translates to: SPPSPHTVCRCGWPS*PAHGERFGFDRHAL Trigger: CAAAGCATGGCGGTCGAATCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTATGAGGCGAAGGAGGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS TCA 90 bp | AGGGGAGGATCCAGTGGTGACGGAGAACCACGCTCTGGGACAGGCTaGCGTGGAACTCCTCCATCAGTACCAGTCTCGGTACAAACATCT | + |
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Preference number: 5 (lower is better) Translates to: RGGSSGDGEPRSGTG*RGTPPSVPVSVQTS Trigger: AGATGTTTGTACCGAGACTGGTACTGATGGAGGAGTTCCACGTCAGCCTGTCCCAGAGCGTGGTTCTCCGTCACCACTGGATCCTCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS CCA 90 bp | TGGGGAACATACTTAGCACACTGTCAGGCACTGGAAGCTTCTCACTaGGAACGGGGTTCTGGCCACAACGGTGGAAGCCAGTACCCGGTT | + |
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Preference number: 5 (lower is better) Translates to: WGTYLAHCQALEASH*ERGSGHNGGSQYPV Trigger: AACCGGGTACTGGCTTCCACCGTTGTGGCCAGAACCCCGTTCCCAGTGAGAAGCTTCCAGTGCCTGACAGTGTGCTAAGTATGTTCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR CAA 90 bp | GGGAAAGTAGGGGTCATGGGTGTTGGAGGCCTGGCCAGCAGCCATAGCCAAGCCAGTAAAGAAGAACCTTaGGAAAGAGGCCATGCGGTC | + |
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Preference number: 5 (lower is better) Translates to: GKVGVMGVGGLASSHSQASKEEP*ERGHAV Trigger: GACCGCATGGCCTCTTTCCAAAGGTTCTTCTTTACT...GGCTTGGCTATGGCTGCTGGCCAGGCCTCCAACACCCATGACCCCTACTTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR CAA 90 bp | AGAGAGGCTGACAGACAACGGAAGCCCCAGTCTGACACAGGTGGGTCAGAACACGGCATGGAGAAGAATTaGTTCCCGGACTTGCAGCGG | + |
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Preference number: 5 (lower is better) Translates to: READRQRKPQSDTGGSEHGMEKN*FPDLQR Trigger: CCGCTGCAAGTCCGGGAACAAATTCTTCTCCATGCC...GTGTTCTGACCCACCTGTGTCAGACTGGGGCTTCCGTTGTCTGTCAGCCTCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS GCA 90 bp | TTCGACCGCCATGCTTTGCACTGTCGTCCTCAGGCCCTTCCTCTGTaGTGGGGAACATACTTAGCACACTGTCAGGCACTGGAAGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: FDRHALHCRPQALPL*WGTYLAHCQALEAS Trigger: AGAAGCTTCCAGTGCCTGACAGTGTGCTAAGTATGTTCCCCAGCACAGAGGAAGGGCCTGAGGACGACAGTGCAAAGCATGGCGGTCGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS GCA 90 bp | TTCATGGCTCTGTCCACCTCTGAAACCAGGTCCAGGAACTGGGCATaGCCTGAACTGACCTCCAGCCCGATGAAGGTCCTGGTTTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: FMALSTSETRSRNWA*PELTSSPMKVLVFS Trigger: AGAGAAAACCAGGACCTTCATCGGGCTGGAGGTCAGTTCAGGGCATGCCCAGTTCCTGGACCTGGTTTCAGAGGTGGACAGAGCCATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS CCA 90 bp | AATTCCTTCATGGCTCTGTCCACCTCTGAAACCAGGTCCAGGAACTaGGCATGCCCTGAACTGACCTCCAGCCCGATGAAGGTCCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: NSFMALSTSETRSRN*ACPELTSSPMKVLV Trigger: AACCAGGACCTTCATCGGGCTGGAGGTCAGTTCAGGGCATGCCCAGTTCCTGGACCTGGTTTCAGAGGTGGACAGAGCCATGAAGGAATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS CCA 90 bp | AAGGCATGGAGAAGAATTTGTTCCCGGACTTGCAGCGGACCTGGTTaGCCAGCACACGTAACAGCATCTCAGAGTCTTCAAACTCATCCA | + |
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Preference number: 5 (lower is better) Translates to: KAWRRICSRTCSGPG*PAHVTASQSLQTHP Trigger: TGGATGAGTTTGAAGACTCTGAGATGCTGTTACGTGTGCTGGCCAACCAGGTCCGCTGCAAGTCCGGGAACAAATTCTTCTCCATGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS-3UTR CAA 90 bp | TGGCTGGGTAAGTGGGAGGAAGGAATGAAGAAAACTGCTGCTGACCACAAATTAGGTCCTGGTTTTCTCTaGATTGGTGTAAATCTTTAC | + |
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Preference number: 5 (lower is better) Translates to: WLGKWEEGMKKTAADHKLGPGFL*IGVNLY Trigger: GTAAAGATTTACACCAATCAAGAGAAAACCAGGACC...TAATTTGTGGTCAGCAGCAGTTTTCTTCATTCCTTCCTCCCACTTACCCAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS TCA 72 bp | TCCTTGAGCACCTGCACAAAGGGGAGGATCCAGTGGTaGCGGAGAACCACGCTCTGGGACAGGCTGACGTGG | + |
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Preference number: 6 (lower is better) Translates to: SLSTCTKGRIQW*RRTTLWDRLTW Trigger: CCACGTCAGCCTGTCCCAGAGCGTGGTTCTCCGTCACCACTGGATCCTCCCCTTTGTGCAGGTGCTCAAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS GCA 72 bp | TCGCCTCATACGGTATGTAGATGTGGGTGGCCCAGTTaGCCCGCTCATGGGGAAAGGTTCGGATTCGACCGC | + |
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Preference number: 6 (lower is better) Translates to: SPHTVCRCGWPS*PAHGERFGFDR Trigger: GCGGTCGAATCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTATGAGGCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS TCA 72 bp | TCCAGTGGTGACGGAGAACCACGCTCTGGGACAGGCTaGCGTGGAACTCCTCCATCAGTACCAGTCTCGGTA | + |
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Preference number: 6 (lower is better) Translates to: SSGDGEPRSGTG*RGTPPSVPVSV Trigger: TACCGAGACTGGTACTGATGGAGGAGTTCCACGTCAGCCTGTCCCAGAGCGTGGTTCTCCGTCACCACTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS CCA 72 bp | AGTCCTCCTTCGCCTCATACGGTATGTAGATGTGGGTaGCCCAGTTGCCCCGCTCATGGGGAAAGGTTCGGA | + |
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Preference number: 6 (lower is better) Translates to: SPPSPHTVCRCG*PSCPAHGERFG Trigger: TCCGAACCTTTCCCCATGAGCGGGGCAACTGGGCCACCCACATCTACATACCGTATGAGGCGAAGGAGGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS CCA 72 bp | ATGGCTCTGTCCACCTCTGAAACCAGGTCCAGGAACTaGGCATGCCCTGAACTGACCTCCAGCCCGATGAAG | + |
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Preference number: 6 (lower is better) Translates to: MALSTSETRSRN*ACPELTSSPMK Trigger: CTTCATCGGGCTGGAGGTCAGTTCAGGGCATGCCCAGTTCCTGGACCTGGTTTCAGAGGTGGACAGAGCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS TCA 72 bp | AACTCCTCCATCAGTACCAGTCTCGGTACAAACATCTaGGCTCGGGGCAGCAACGCGTCAAGCAGATCCCGG | + |
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Preference number: 6 (lower is better) Translates to: NSSISTSLGTNI*ARGSNASSRSR Trigger: CCGGGATCTGCTTGACGCGTTGCTGCCCCGAGCTCAGATGTTTGTACCGAGACTGGTACTGATGGAGGAGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS CCA 72 bp | TACTTAGCACACTGTCAGGCACTGGAAGCTTCTCACTaGGAACGGGGTTCTGGCCACAACGGTGGAAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: YLAHCQALEASH*ERGSGHNGGSQ Trigger: CTGGCTTCCACCGTTGTGGCCAGAACCCCGTTCCCAGTGAGAAGCTTCCAGTGCCTGACAGTGTGCTAAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS CCA 72 bp | ATTTCCTGTAGTTCCTGCAGGCACTGTCCCTCCAGCTaGAGACTAGCATCACCTACACACCAGGCCAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ISCSSCRHCPSS*RLASPTHQARL Trigger: CAGCCTGGCCTGGTGTGTAGGTGATGCTAGTCTCCAGCTGGAGGGACAGTGCCTGCAGGAACTACAGGAAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS CAA 72 bp | GAGAAGAATTTGTTCCCGGACTTGCAGCGGACCTGGTaGGCCAGCACACGTAACAGCATCTCAGAGTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: EKNLFPDLQRTW*ASTRNSISESS Trigger: TGAAGACTCTGAGATGCTGTTACGTGTGCTGGCCAACCAGGTCCGCTGCAAGTCCGGGAACAAATTCTTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS CAA 90 bp | AAAGGCATGGAGAAGAATTTGTTCCCGGACTTGCAGCGGACCTGGTaGGCCAGCACACGTAACAGCATCTCAGAGTCTTCAAACTCATCC | + |
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Preference number: 6 (lower is better) Translates to: KGMEKNLFPDLQRTW*ASTRNSISESSNSS Trigger: GGATGAGTTTGAAGACTCTGAGATGCTGTTACGTGTGCTGGCCAACCAGGTCCGCTGCAAGTCCGGGAACAAATTCTTCTCCATGCCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS GCA 72 bp | GAGTCTTCAAACTCATCCACGATTTCCTGTAGTTCCTaGAGGCACTGTCCCTCCAGCTGGAGACTAGCATCA | + |
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Preference number: 6 (lower is better) Translates to: ESSNSSTISCSS*RHCPSSWRLAS Trigger: TGATGCTAGTCTCCAGCTGGAGGGACAGTGCCTGCAGGAACTACAGGAAATCGTGGATGAGTTTGAAGACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS CCA 72 bp | AGAAGAATTTGTTCCCGGACTTGCAGCGGACCTGGTTaGCCAGCACACGTAACAGCATCTCAGAGTCTTCAA | + |
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Preference number: 6 (lower is better) Translates to: RRICSRTCSGPG*PAHVTASQSLQ Trigger: TTGAAGACTCTGAGATGCTGTTACGTGTGCTGGCCAACCAGGTCCGCTGCAAGTCCGGGAACAAATTCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS TCA 72 bp | AGCATCACCTACACACCAGGCCAGGCTGACATGAAATaGGGGGTCCTGGTAGAAAGTAGTAAGGTCAAATTC | + |
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Preference number: 6 (lower is better) Translates to: SITYTPGQADMK*GVLVESSKVKF Trigger: GAATTTGACCTTACTACTTTCTACCAGGACCCCTCATTTCATGTCAGCCTGGCCTGGTGTGTAGGTGATGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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| CDS CAA 72 bp | GTAAATCTTTACCCTGTTGGCAGTAAAGAAGAACCTTaGGAAAGAGGCCATGCGGTCCTTGAGCACCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: VNLYPVGSKEEP*ERGHAVLEHLH Trigger: GTGCAGGTGCTCAAGGACCGCATGGCCTCTTTCCAAAGGTTCTTCTTTACTGCCAACAGGGTAAAGATTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS CAA 90 bp | TTGATTGGTGTAAATCTTTACCCTGTTGGCAGTAAAGAAGAACCTTaGGAAAGAGGCCATGCGGTCCTTGAGCACCTGCACAAAGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LIGVNLYPVGSKEEP*ERGHAVLEHLHKGE Trigger: CTCCCCTTTGTGCAGGTGCTCAAGGACCGCATGGCCTCTTTCCAAAGGTTCTTCTTTACTGCCAACAGGGTAAAGATTTACACCAATCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034245.16 ENSMUST00000126180.2 |
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| CDS CAA 72 bp | ACTGACCTCCAGCCCGATGAAGGTCCTGGTTTTCTCTaGATTGGTGTAAATCTTTACCCTGTTGGCAGTAAA | + |
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Preference number: 6 (lower is better) Translates to: TDLQPDEGPGFL*IGVNLYPVGSK Trigger: TTTACTGCCAACAGGGTAAAGATTTACACCAATCAAGAGAAAACCAGGACCTTCATCGGGCTGGAGGTCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034245.16 |
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