RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UROC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034456

Ensembl transcript IDs: ENSMUST00000046128.12, ENSMUST00000164761.6

Found 291 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTGTGAACCCATaGGAGAATGCCAGGTTCTCTGAGGAACCGGAAGTGATGGATGAC +
Preference number: 1 (lower is better)
Translates to: YSSAPRTWCEHFVNP*ENARFSEEPEVMDD
Trigger: GTCATCCATCACTTCCGGTTCCTCAGAGAACCTGGCATTCTCTCATGGGTTCACAAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR GCA 90 bp CCAAGCGTCTCTTCTTTCTTCCTGGCTCATAGTGTAATTTTGCTCTaGCATGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGG +
Preference number: 1 (lower is better)
Translates to: PSVSSFFLAHSVILL*HVLPAIATWHCCQR
Trigger: CCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGCCAGGAAGAAAGAAGAGACGCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR TCA 90 bp GATAGGAGACTGAACAGCACATTTAGAAGGTCACAGAGAATCTTGTaGGGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATC +
Preference number: 1 (lower is better)
Translates to: DRRLNSTFRRSQRIL*GGCQLGQHSRFLPI
Trigger: GATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCCTCACAAGATTCTCTGTGACCTTCTAAATGTGCTGTTCAGTCTCCTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CCA 90 bp CATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTaGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTT +
Preference number: 1 (lower is better)
Translates to: HSVILLCHVLPAIAT*HCCQRPKATRLPYL
Trigger: AAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR GCA 90 bp TGCAAGAAACATAGACCAAAATGCCAGAAAGCCGATTTTGACCTCTaGTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCA +
Preference number: 1 (lower is better)
Translates to: CKKHRPKCQKADFDL*YGCRWAKGLFQSCA
Trigger: TGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAGGTCAAAATCGGCTTTCTGGCATTTTGGTCTATGTTTCTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CCA 90 bp AGACTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTaGCTCTACTCTAGTCTTTATTTCCTGTCTATCTTCCCCCATACT +
Preference number: 1 (lower is better)
Translates to: RLCYPLLLAQSVPCV*LYSSLYFLSIFPHT
Trigger: AGTATGGGGGAAGATAGACAGGAAATAAAGACTAGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR TCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGGGTGGGGGAGGGTCATaGGCTGCGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTGGGGS*AARGGQ
Trigger: CTGCCCTCCCCTCGCAGCTCATGACCCTCCCCCACC...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR TCA 90 bp GGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTGGTGGGGGAGGGTCATaGGCTGCGAGGGGAGGGCAG +
Preference number: 2 (lower is better)
Translates to: GASLASIQGSFLSKLESTGGGGS*AARGGQ
Trigger: CTGCCCTCCCCTCGCAGCTCATGACCCTCCCCCACC...AGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGGCGAGGGGAGGGCAGTaGGAAGGAGGGGATCAAGAG +
Preference number: 2 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTARGGQ*EGGDQE
Trigger: CTCTTGATCCCCTCCTTCCCACTGCCCTCCCCTCGC...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGAGGGATGCAGTGGGGTaGGGGAGGGTCATGAGCTGC +
Preference number: 2 (lower is better)
Translates to: LGIVARGPKQHDFLILRGRDAVG*GRVMSC
Trigger: GCAGCTCATGACCCTCCCCCACCCCACTGCATCCCT...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR GCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTGGGAGGGTCATGAGCTaGGAGGGGAGGGCAGTGGGA +
Preference number: 2 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSGRVMS*EGRAVG
Trigger: TCCCACTGCCCTCCCCTCGCAGCTCATGACCCTCCC...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR GCA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATGGGAGGGTCATGAGCTaGGAGGGGAGGGCAGTGGGA +
Preference number: 2 (lower is better)
Translates to: AHSVILLCHVLPAIATWHGRVMS*EGRAVG
Trigger: TCCCACTGCCCTCCCCTCGCAGCTCATGACCCTCCC...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGGCGAGGGGAGGGCAGTaGGAAGGAGGGGATCAAGAG +
Preference number: 2 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLARGGQ*EGGDQE
Trigger: CTCTTGATCCCCTCCTTCCCACTGCCCTCCCCTCGC...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGAGGGATGCAGTGGGGTaGGGGAGGGTCATGAGCTGC +
Preference number: 2 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLRDAVG*GRVMSC
Trigger: GCAGCTCATGACCCTCCCCCACCCCACTGCATCCCT...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR TCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGTGGCCTGGTGAAGATTaGAAAGAGGGCACAGGACAT +
Preference number: 2 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTWPGED*KEGTGH
Trigger: ATGTCCTGTGCCCTCTTTTCAATCTTCACCAGGCCA...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGCCACCCAGGGACCTCTaGAAGTGGTTGGTTCTGTTT +
Preference number: 2 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRPPRDL*KWLVLF
Trigger: AAACAGAACCAACCACTTCCAGAGGTCCCTGGGTGG...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CAA 90 bp CAGCAGCACCTGGCCACTTTGCCTCAGAGACTCTGTTATCCACTCTaGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTAGTCTT +
Preference number: 2 (lower is better)
Translates to: QQHLATLPQRLCYPL*LAQSVPCVWLYSSL
Trigger: AAGACTAGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAGTCTCTGAGGCAAAGTGGCCAGGTGCTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR TCA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGGGTGTGAGCACTTTGTaGACCCATGAGAGAATGCCA +
Preference number: 2 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRGVSTL*THERMP
Trigger: TGGCATTCTCTCATGGGTTCACAAAGTGCTCACACC...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR TCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGAGATCTGGCCTGGTaGAGATTGAAAAGAGGGCAC +
Preference number: 2 (lower is better)
Translates to: RLIPKLCREVRGPLEVELGDLAW*RLKRGH
Trigger: GTGCCCTCTTTTCAATCTTCACCAGGCCAGATCTCC...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR GCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGCCACTTGGCATTGTTaGCAGAGGCCCAAAGCAACA +
Preference number: 2 (lower is better)
Translates to: RLIPKLCREVRGPLEVELATWHC*QRPKAT
Trigger: TGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGC...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp AGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGGTCCAACTGCCCTCAAACCAGTaGTCAAAGACTAGCGCCTTC +
Preference number: 2 (lower is better)
Translates to: RALGYWNTPLKDWRTWVQLPSNQ*SKTSAF
Trigger: GAAGGCGCTAGTCTTTGACCACTGGTTTGAGGGCAG...TTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTACCACCCAGGGACCTCTaGAAGTGGTTGGTTCTGTTT +
Preference number: 2 (lower is better)
Translates to: RLIPKLCREVRGPLEVELPPRDL*KWLVLF
Trigger: AAACAGAACCAACCACTTCCAGAGGTCCCTGGGTGG...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAACACCCTTGAAGGATTaGAGGACTTGGGTCCAAGCG +
Preference number: 2 (lower is better)
Translates to: RLIPKLCREVRGPLEVELTPLKD*RTWVQA
Trigger: CGCTTGGACCCAAGTCCTCCAATCCTTCAAGGGTGT...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR TCA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATGGAGATCTGGCCTGGTaGAGATTGAAAAGAGGGCAC +
Preference number: 2 (lower is better)
Translates to: AHSVILLCHVLPAIATWHGDLAW*RLKRGH
Trigger: GTGCCCTCTTTTCAATCTTCACCAGGCCAGATCTCC...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGTCAGCACCAAGGACTTaGTGTGAGCACTTTGTGAAC +
Preference number: 2 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARSAPRT*CEHFVN
Trigger: GTTCACAAAGTGCTCACACCAAGTCCTTGGTGCTGA...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CAA 90 bp AGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATaGCCTTTTCTCCACATGTTGCAGCAGCACCTGGCCACTTTGCCT +
Preference number: 2 (lower is better)
Translates to: RDLWKWLVLFFMVTQ*PFLHMLQQHLATLP
Trigger: AGGCAAAGTGGCCAGGTGCTGCTGCAACATGTGGAGAAAAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CAA 90 bp TTGGGTCCAAGCGTCTCTTCTTTCTTCCTGGCTCATAGTGTAATTTaGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATTGTTGC +
Preference number: 2 (lower is better)
Translates to: LGPSVSSFFLAHSVI*LCHVLPAIATWHCC
Trigger: GCAACAATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGCCAGGAAGAAAGAAGAGACGCTTGGACCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR TCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTCACTTTGTGAACCCATaGGAGAATGCCAGGTTCTCT +
Preference number: 2 (lower is better)
Translates to: ARERALGYWNTPLKDWRTHFVNP*ENARFS
Trigger: AGAGAACCTGGCATTCTCTCATGGGTTCACAAAGTG...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR GCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGCTTCAGAGGTTGGATTaGAGGCCATGGGAAAGATAT +
Preference number: 2 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARLQRLD*RPWERY
Trigger: ATATCTTTCCCATGGCCTGCAATCCAACCTCTGAAG...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR TCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTCACTTTGTGAACCCATaGGAGAATGCCAGGTTCTCT +
Preference number: 2 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSHFVNP*ENARFS
Trigger: AGAGAACCTGGCATTCTCTCATGGGTTCACAAAGTG...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR GCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTACTTCAGAGGTTGGATTaGAGGCCATGGGAAAGATAT +
Preference number: 2 (lower is better)
Translates to: RLIPKLCREVRGPLEVELLQRLD*RPWERY
Trigger: ATATCTTTCCCATGGCCTGCAATCCAACCTCTGAAG...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR GCA 90 bp AGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGGTCCAAAGTGTAATTTTGCTCTaGCATGTGCTCCCTGCCATT +
Preference number: 2 (lower is better)
Translates to: RALGYWNTPLKDWRTWVQSVILL*HVLPAI
Trigger: AATGGCAGGGAGCACATGGCAGAGCAAAATTACACT...TTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR GCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTATCATGGTCACACAATTaGCTTTTCTCCACATGTTGC +
Preference number: 2 (lower is better)
Translates to: RLIPKLCREVRGPLEVELSWSHN*LFSTCC
Trigger: GCAACATGTGGAGAAAAGGCAATTGTGTGACCATGA...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGTCTGTGCCATGTGTTTaGCTCTACTCTAGTCTTTAT +
Preference number: 2 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRSVPCV*LYSSLY
Trigger: ATAAAGACTAGAGTAGAGCCAAACACATGGCACAGA...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGCTAAAAGATGGGTATTaGGGGTTAGGAGGCATTATA +
Preference number: 2 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRLKDGY*GLGGII
Trigger: TATAATGCCTCCTAACCCCCAATACCCATCTTTTAG...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CCA 90 bp AGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGGTCCAATCTGTGCCATGTGTTTaGCTCTACTCTAGTCTTTAT +
Preference number: 2 (lower is better)
Translates to: RALGYWNTPLKDWRTWVQSVPCV*LYSSLY
Trigger: ATAAAGACTAGAGTAGAGCCAAACACATGGCACAGA...TTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CAA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGCTCTGTTATCCACTCTaGCTAGCCCAGTCTGTGCCA +
Preference number: 3 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTLCYPL*LAQSVP
Trigger: TGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR TCA 72 bp GGGATCACACAGCAGGAGATCTGGCCTGGTGAAGATTaGAAAGAGGGCACAGGACATGGTAGTGGGAAGGGG +
Preference number: 3 (lower is better)
Translates to: GITQQEIWPGED*KEGTGHGSGKG
Trigger: CCCCTTCCCACTACCATGTCCTGTGCCCTCTTTTCAATCTTCACCAGGCCAGATCTCCTGCTGTGTGATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CAA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGCAGCACCTGGCCACTTaGCCTCAGAGACTCTGTTAT +
Preference number: 3 (lower is better)
Translates to: LGIVARGPKQHDFLILRGQHLAT*PQRLCY
Trigger: ATAACAGAGTCTCTGAGGCAAAGTGGCCAGGTGCTG...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CAA 90 bp AGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGGTCCAATGCCACTTGGCATTGTaGCCAGAGGCCCAAAGCAAC +
Preference number: 3 (lower is better)
Translates to: RALGYWNTPLKDWRTWVQCHLAL*PEAQSN
Trigger: GTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCA...TTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR TCA 72 bp GCACCAAGGACTTGGTGTGAGCACTTTGTGAACCCATaGGAGAATGCCAGGTTCTCTGAGGAACCGGAAGTG +
Preference number: 3 (lower is better)
Translates to: APRTWCEHFVNP*ENARFSEEPEV
Trigger: CACTTCCGGTTCCTCAGAGAACCTGGCATTCTCTCATGGGTTCACAAAGTGCTCACACCAAGTCCTTGGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CAA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGAGCTACCCAACTTTCTaGCTAGGTCTCCTGCTTCAG +
Preference number: 3 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRSYPTF*LGLLLQ
Trigger: CTGAAGCAGGAGACCTAGCAAGAAAGTTGGGTAGCT...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR TCA 72 bp CTGAACAGCACATTTAGAAGGTCACAGAGAATCTTGTaGGGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTC +
Preference number: 3 (lower is better)
Translates to: LNSTFRRSQRIL*GGCQLGQHSRF
Trigger: GAACCTTGAATGCTGGCCAAGCTGGCACCCGCCTCACAAGATTCTCTGTGACCTTCTAAATGTGCTGTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR TCA 72 bp ACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTGTaGACCCATGAGAGAATGCCAGGTTCTCTGAGGAAC +
Preference number: 3 (lower is better)
Translates to: TPQHQGLGVSTL*THERMPGSLRN
Trigger: GTTCCTCAGAGAACCTGGCATTCTCTCATGGGTTCACAAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR TCA 72 bp TCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTaGGCACTTTGTGAACCCATGAGAGAATGCCAGGTT +
Preference number: 3 (lower is better)
Translates to: SSPILLSTKDLV*ALCEPMRECQV
Trigger: AACCTGGCATTCTCTCATGGGTTCACAAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CCA 72 bp GGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTaGGTCCAAGCGTCTCTTCTTTCTTCCTGGCTCATA +
Preference number: 3 (lower is better)
Translates to: GYWNTPLKDWRT*VQASLLSSWLI
Trigger: TATGAGCCAGGAAGAAAGAAGAGACGCTTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CCA 72 bp CACAATTGCCTTTTCTCCACATGTTGCAGCAGCACCTaGCCACTTTGCCTCAGAGACTCTGTTATCCACTCT +
Preference number: 3 (lower is better)
Translates to: HNCLFSTCCSST*PLCLRDSVIHS
Trigger: AGAGTGGATAACAGAGTCTCTGAGGCAAAGTGGCCAGGTGCTGCTGCAACATGTGGAGAAAAGGCAATTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CCA 72 bp TGCAGGATTCCAGATCCACCCAGGGACCTCTGGAAGTaGTTGGTTCTGTTTTTCATGGTCACACAATTGCCT +
Preference number: 3 (lower is better)
Translates to: CRIPDPPRDLWK*LVLFFMVTQLP
Trigger: AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGGTGGATCTGGAATCCTGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CCA 72 bp AACTCCTGCAGGATTCCAGATCCACCCAGGGACCTCTaGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAA +
Preference number: 3 (lower is better)
Translates to: NSCRIPDPPRDL*KWLVLFFMVTQ
Trigger: TTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGGTGGATCTGGAATCCTGCAGGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CCA 72 bp TTTAGAAGTGGAGCTAGGGAAAGGGCTTTAGGCTACTaGAACACACCCTTGAAGGATTGGAGGACTTGGGTC +
Preference number: 3 (lower is better)
Translates to: FRSGARERALGY*NTPLKDWRTWV
Trigger: GACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGCTCCACTTCTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CAA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATGACCTCTGGAAGTGGTaGGTTCTGTTTTTCATGGTC +
Preference number: 3 (lower is better)
Translates to: AHSVILLCHVLPAIATWHDLWKW*VLFFMV
Trigger: GACCATGAAAAACAGAACCAACCACTTCCAGAGGTC...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CAA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTACCTAAAAGATGGGTATaGGGGGTTAGGAGGCATTAT +
Preference number: 3 (lower is better)
Translates to: RLIPKLCREVRGPLEVELPKRWV*GVRRHY
Trigger: ATAATGCCTCCTAACCCCCAATACCCATCTTTTAGG...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR-3UTR CAA 90 bp AGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGGTCCAATTCATGGTCACACAATaGCCTTTTCTCCACATGTTG +
Preference number: 3 (lower is better)
Translates to: RALGYWNTPLKDWRTWVQFMVTQ*PFLHML
Trigger: CAACATGTGGAGAAAAGGCAATTGTGTGACCATGAA...TTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR GCA 72 bp TCTTCTTTCTTCCTGGCTCATAGTGTAATTTTGCTCTaGCATGTGCTCCCTGCCATTGCCACTTGGCATTGT +
Preference number: 3 (lower is better)
Translates to: SSFFLAHSVILL*HVLPAIATWHC
Trigger: ACAATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGCCAGGAAGAAAGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR GCA 72 bp AAATGCCAGAAAGCCGATTTTGACCTCTGCTATGGCTaGAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCA +
Preference number: 3 (lower is better)
Translates to: KCQKADFDLCYG*RWAKGLFQSCA
Trigger: TGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAGGTCAAAATCGGCTTTCTGGCATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR GCA 72 bp ACTTTCTTGCTAGGTCTCCTGCTTCAGAGGTTGGATTaGAGGCCATGGGAAAGATATAAGAACCCAGCTTAT +
Preference number: 3 (lower is better)
Translates to: TFLLGLLLQRLD*RPWERYKNPAY
Trigger: ATAAGCTGGGTTCTTATATCTTTCCCATGGCCTGCAATCCAACCTCTGAAGCAGGAGACCTAGCAAGAAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR GCA 72 bp CATAGACCAAAATGCCAGAAAGCCGATTTTGACCTCTaGTATGGCTGCAGATGGGCTAAAGGCTTATTCCAA +
Preference number: 3 (lower is better)
Translates to: HRPKCQKADFDL*YGCRWAKGLFQ
Trigger: TTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAGGTCAAAATCGGCTTTCTGGCATTTTGGTCTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CCA 72 bp TATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTaGCTCTACTCTAGTCTTTATTTCCTGTCTATCTTC +
Preference number: 3 (lower is better)
Translates to: YPLLLAQSVPCV*LYSSLYFLSIF
Trigger: GAAGATAGACAGGAAATAAAGACTAGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGGAGCCCACCACCAGCTaGTGCTTGGCAGCCTCTCGG +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTEPTTS*CLAASR
Trigger: CCGAGAGGCTGCCAAGCATCAGCTGGTGGTGGGCTC...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCGGGCCTCTGAGAAGCTaGGCTGCACAGGGTAGTAGC +
Preference number: 4 (lower is better)
Translates to: GGCQLGQHSRFLPIQAGVGPLRS*AAQGSS
Trigger: GCTACTACCCTGTGCAGCTCAGCTTCTCAGAGGCCC...GACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCCTTGGGCCAACCTGTTaGTGGCTGCGACATGCCTCC +
Preference number: 4 (lower is better)
Translates to: GGCQLGQHSRFLPIQAGVLGPTC*WLRHAS
Trigger: GGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAG...GACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGGCTGCTGCCTTGGCTTaGGCCCCACTCATCCCGCCA +
Preference number: 4 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRAAALA*APLIPP
Trigger: TGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGC...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGGGGCCTCTGAGAAGCTaGGCTGCACAGGGTAGTAGC +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTGPLRS*AAQGSS
Trigger: GCTACTACCCTGTGCAGCTCAGCTTCTCAGAGGCCC...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTTCCTCAGGGCCAGCTaGTCTTCTTCAGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: GGCQLGQHSRFLPIQAGVFLRAS*SSSGLR
Trigger: CCTCAGCCCTGAAGAAGAGCAGCTGGCCCTGAGGAA...GACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTCTCCCACGAAGTTCTaGACGGCCATGTCTGCGCAG +
Preference number: 4 (lower is better)
Translates to: GGCQLGQHSRFLPIQAGVSPTKF*TAMSAQ
Trigger: CTGCGCAGACATGGCCGTGCAGAACTTCGTGGGAGA...GACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GAATCTTGTGAGGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCTCTAACCGGAGCATGTaGCACCCCAGCCCAGCGACC +
Preference number: 4 (lower is better)
Translates to: ESCEAGASLASIQGSFLSSNRSM*HPSPAT
Trigger: GGTCGCTGGGCTGGGGTGCCACATGCTCCGGTTAGA...GGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCCTCACAAGATTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCGTGAGCACTGTGCCATaGACGATTCCCTGGGGACCA +
Preference number: 4 (lower is better)
Translates to: GGCQLGQHSRFLPIQAGVVSTVP*TIPWGP
Trigger: TGGTCCCCAGGGAATCGTCCATGGCACAGTGCTCAC...GACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGGTGACAGCCAGGTCCTaGGGGTCCCCTGATGTGCAT +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTVTARS*GSPDVH
Trigger: ATGCACATCAGGGGACCCCCAGGACCTGGCTGTCAC...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCGGTAGTAGCCGCCATTaGACGGGTTGTGACAGGATG +
Preference number: 4 (lower is better)
Translates to: GGCQLGQHSRFLPIQAGVGSSRH*TGCDRM
Trigger: CATCCTGTCACAACCCGTTCAATGGCGGCTACTACC...GACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGTCTGCTCCTGCTCTCTaGGCCTCCAAGAGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTSAPAL*ASKRKA
Trigger: TGCCTTCCTCTTGGAGGCTCAGAGAGCAGGAGCAGA...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGGAGCCCACCACCAGCTaGTGCTTGGCAGCCTCTCGG +
Preference number: 4 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLEPTTS*CLAASR
Trigger: CCGAGAGGCTGCCAAGCATCAGCTGGTGGTGGGCTC...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTGGGGGTCCCCTGATGTaGATACCCAGCGGAAGGGCC +
Preference number: 4 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFGGPLM*IPSGRA
Trigger: GGCCCTTCCGCTGGGTATGCACATCAGGGGACCCCC...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGAGCTCCTGTGGAAACTaGGCCACAGCAGGGTCCAAG +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTSSCGN*ATAGSK
Trigger: CTTGGACCCTGCTGTGGCCCAGTTTCCACAGGAGCT...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGCAGCATTCAGCACAGTaGGCACTGTGCCATGGACGA +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTQHSAQ*ALCHGR
Trigger: TCGTCCATGGCACAGTGCTCACTGTGCTGAATGCTG...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGCGCCAAGCCCAGAGGTaGCAAAGACCTTCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: LGIVARGPKQHDFLILRGRQAQR*QRPSLP
Trigger: TGGCAGGGAAGGTCTTTGTCACCTCTGGGCTTGGCG...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGCGCCAAGCCCAGAGGTaGCAAAGACCTTCCCTGCCA +
Preference number: 4 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRRQAQR*QRPSLP
Trigger: TGGCAGGGAAGGTCTTTGTCACCTCTGGGCTTGGCG...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CCCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTGCTGCTGCCTTGGCTTaGGCCCCACTCATCCCGCCA +
Preference number: 4 (lower is better)
Translates to: PRDLWKWLVLFFMVTQLPAAALA*APLIPP
Trigger: TGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGC...AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTGAGGCTCTGGGCCTCTaGGAAGCTGAGCTGCACAGG +
Preference number: 4 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFEALGL*EAELHR
Trigger: CCTGTGCAGCTCAGCTTCTCAGAGGCCCAGAGCCTC...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGCAGGGTTGGAGGACATaGGGCTCTGGGCCTCTGAGA +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARQGWRT*GSGPLR
Trigger: TCTCAGAGGCCCAGAGCCTCATGTCCTCCAACCCTG...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGTATTCGAAGTCTCCCTaGAGGGGCTGTCAGTGCCAC +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTYSKSP*RGCQCH
Trigger: GTGGCACTGACAGCCCCTTCAGGGAGACTTCGAATA...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGGCATCCAACGATGGCTaGTGCCTTGGCTTGAGCCCC +
Preference number: 4 (lower is better)
Translates to: LGIVARGPKQHDFLILRGASNDG*CLGLSP
Trigger: GGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGC...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTGCATCCAACGATGGCTaGTGCCTTGGCTTGAGCCCC +
Preference number: 4 (lower is better)
Translates to: GASLASIQGSFLSKLESTASNDG*CLGLSP
Trigger: GGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGC...AGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTTCTAACCGGAGCATGTaGCACCCCAGCCCAGCGACC +
Preference number: 4 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFSNRSM*HPSPAT
Trigger: GGTCGCTGGGCTGGGGTGCCACATGCTCCGGTTAGA...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGTCGACAGGTAGGACATaGTCAGCCGGAACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: LGIVARGPKQHDFLILRGSTGRT*SAGTGP
Trigger: GGGCCCAGTTCCGGCTGACCATGTCCTACCTGTCGA...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGCTGCCCGCTGTCATCTaGCCATACATGGTCACCCCC +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARLPAVI*PYMVTP
Trigger: GGGGGTGACCATGTATGGCCAGATGACAGCGGGCAG...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTACTGGGCCCAGTTGCTaGACACTTGCCCGTTGCCTC +
Preference number: 4 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFTGPSC*TLARCL
Trigger: GAGGCAACGGGCAAGTGTTCAGCAACTGGGCCCAGT...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTACTGGGCCCAGTTGCTaGACACTTGCCCGTTGCCTC +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTTGPSC*TLARCL
Trigger: GAGGCAACGGGCAAGTGTTCAGCAACTGGGCCCAGT...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGCTTGGGCCAACCTGTTaGTGGCTGCGACATGCCTCC +
Preference number: 4 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLLGPTC*WLRHAS
Trigger: GGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAG...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGTCTGCTCCTGCTCTCTaGGCCTCCAAGAGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARSAPAL*ASKRKA
Trigger: TGCCTTCCTCTTGGAGGCTCAGAGAGCAGGAGCAGA...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTGTCCTGGGGGTCCCCTaGTGTGCATACCCAGCGGAA +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSVLGVP*CAYPAE
Trigger: TTCCGCTGGGTATGCACATCAGGGGACCCCCAGGAC...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGACACCCCCTCCATTGTaGAGTGCAACCCAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARTPPPL*SATQVA
Trigger: TGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGT...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGTTCCTCAGGGCCAGCTaGTCTTCTTCAGGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: LGIVARGPKQHDFLILRGFLRAS*SSSGLR
Trigger: CCTCAGCCCTGAAGAAGAGCAGCTGGCCCTGAGGAA...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTGCCAAGTTCTCGATaGCCAGGTACCGACGACCAG +
Preference number: 4 (lower is better)
Translates to: GASLASIQGSFLSKLESTLPSSR*PGTDDQ
Trigger: CTGGTCGTCGGTACCTGGGCATCGAGAACTTGGCAG...AGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTGGGGGTCCCCTGATGTaGATACCCAGCGGAAGGGCC +
Preference number: 4 (lower is better)
Translates to: PGTSGSGWFCFSWSHNCLGGPLM*IPSGRA
Trigger: GGCCCTTCCGCTGGGTATGCACATCAGGGGACCCCC...AAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTAGCTCCTGTGGAAACTaGGCCACAGCAGGGTCCAAG +
Preference number: 4 (lower is better)
Translates to: GASLASIQGSFLSKLESTSSCGN*ATAGSK
Trigger: CTTGGACCCTGCTGTGGCCCAGTTTCCACAGGAGCT...AGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGGGTCACCAGCTCCTGTaGAAACTGGGCCACAGCAGG +
Preference number: 4 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLGHQLL*KLGHSR
Trigger: CCTGCTGTGGCCCAGTTTCCACAGGAGCTGGTGACC...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTCTGCCCGCTGTCATCTaGCCATACATGGTCACCCCC +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTLPAVI*PYMVTP
Trigger: GGGGGTGACCATGTATGGCCAGATGACAGCGGGCAG...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTGTGACAGCCAGGTCCTaGGGGTCCCCTGATGTGCAT +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTVTARS*GSPDVH
Trigger: ATGCACATCAGGGGACCCCCAGGACCTGGCTGTCAC...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGGTGCCACTCACATCATaGTGGTCACGGCTCAGGACC +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARVPLTS*WSRLRT
Trigger: GGTCCTGAGCCGTGACCACCATGATGTGAGTGGCAC...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGTTGAGGCTCTGGGCCTCTaGGAAGCTGAGCTGCACAGG +
Preference number: 4 (lower is better)
Translates to: QHSRFLPIQAGVYSYRPVEALGL*EAELHR
Trigger: CCTGTGCAGCTCAGCTTCTCAGAGGCCCAGAGCCTC...AACAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGTTGTCCTGGGGGTCCCCTaGTGTGCATACCCAGCGGAA +
Preference number: 4 (lower is better)
Translates to: QHSRFLPIQAGVYSYRPVVLGVP*CAYPAE
Trigger: TTCCGCTGGGTATGCACATCAGGGGACCCCCAGGAC...AACAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGACGGCCTTTCTGGTCTaGGTACAGGATCCTTGCCTG +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARTAFLV*VQDPCL
Trigger: CAGGCAAGGATCCTGTACTCAGACCAGAAAGGCCGT...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAACACCCCCTCCATTGTaGAGTGCAACCCAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: RLIPKLCREVRGPLEVELTPPPL*SATQVA
Trigger: TGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGT...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GAATCTTGTGAGGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCGCATTGTCTGGCAGATaGTCTCATAGGCCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: ESCEAGASLASIQGSFLSALSGR*SHRPWG
Trigger: ACCCCAAGGCCTATGAGATCATCTGCCAGACAATGC...GGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCCTCACAAGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GAATCTTGTGAGGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCCAATGTAGCAGTAGCTaGCCGCTGTCATCTGGCCAT +
Preference number: 4 (lower is better)
Translates to: ESCEAGASLASIQGSFLSQCSSS*PLSSGH
Trigger: ATGGCCAGATGACAGCGGGCAGCTACTGCTACATTG...GGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCCTCACAAGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTATCCAACGATGGCTGCTaGCTTGGCTTGAGCCCCACT +
Preference number: 4 (lower is better)
Translates to: RLIPKLCREVRGPLEVELSNDGC*LGLSPT
Trigger: AGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGA...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGGTGGCGTTTTACAAGTaGAGCTTTATCCACCTCCGC +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTVAFYK*SFIHLR
Trigger: GCGGAGGTGGATAAAGCTGCACTTGTAAAACGCCAC...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GAATCTTGTGAGGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCTCCATCAGCCAGCCTTaGCGGTGGCGTTTTACAAGT +
Preference number: 4 (lower is better)
Translates to: ESCEAGASLASIQGSFLSSISQP*RWRFTS
Trigger: ACTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGA...GGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCCTCACAAGATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGCTCCTCAGGCTTTCCTaGACCAGGTGCTTGAAGGCA +
Preference number: 4 (lower is better)
Translates to: LGIVARGPKQHDFLILRGLLRLS*TRCLKA
Trigger: TGCCTTCAAGCACCTGGTGCAGGAAAGCCTGAGGAG...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTTTGATGGCTGCGACATaGCTCCTCAGGCTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: GASLASIQGSFLSKLESTLMAAT*LLRLSC
Trigger: GCAGGAAAGCCTGAGGAGGCATGTCGCAGCCATCAA...AGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTCTCCCACGAAGTTCTaGACGGCCATGTCTGCGCAG +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTSPTKF*TAMSAQ
Trigger: CTGCGCAGACATGGCCGTGCAGAACTTCGTGGGAGA...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGATCATCCTGGCTTTCTaGTCAGCCTCTGCAGTTCCA +
Preference number: 4 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTIILAF*SASAVP
Trigger: TGGAACTGCAGAGGCTGAGCAGAAAGCCAGGATGAT...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGCTCCCCTGCTTCCAGTaGTCAGGGTCAAGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRLPCFQ*SGSSVL
Trigger: CAGAACACTTGACCCTGAGCACTGGAAGCAGGGGAG...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTGGTCACCAGCTCCTGTaGAAACTGGGCCACAGCAGG +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSGHQLL*KLGHSR
Trigger: CCTGCTGTGGCCCAGTTTCCACAGGAGCTGGTGACC...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTTCGACAGGTAGGACATaGTCAGCCGGAACTGGGCCC +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSSTGRT*SAGTGP
Trigger: GGGCCCAGTTCCGGCTGACCATGTCCTACCTGTCGA...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTGTGAGCACTGTGCCATaGACGATTCCCTGGGGACCA +
Preference number: 4 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFVSTVP*TIPWGP
Trigger: TGGTCCCCAGGGAATCGTCCATGGCACAGTGCTCAC...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGGAGGACATGAGGCTCTaGGCCTCTGAGAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLEDMRL*ASEKLS
Trigger: GCTCAGCTTCTCAGAGGCCCAGAGCCTCATGTCCTC...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTGAGGACATGAGGCTCTaGGCCTCTGAGAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTEDMRL*ASEKLS
Trigger: GCTCAGCTTCTCAGAGGCCCAGAGCCTCATGTCCTC...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGCCACTCACATCATGGTaGTCACGGCTCAGGACCACT +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARPLTSW*SRLRTT
Trigger: AGTGGTCCTGAGCCGTGACCACCATGATGTGAGTGG...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGTGCCACTCACATCATaGTGGTCACGGCTCAGGACC +
Preference number: 4 (lower is better)
Translates to: RLIPKLCREVRGPLEVELVPLTS*WSRLRT
Trigger: GGTCCTGAGCCGTGACCACCATGATGTGAGTGGCAC...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTGAAGTGCAACCCAGGTaGCACCACGACAGGCATCTC +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTEVQPR*HHDRHL
Trigger: GAGATGCCTGTCGTGGTGCCACCTGGGTTGCACTTC...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTGGTGTCCACTGTACATaGCCAGAGTCTGTTCCTCAG +
Preference number: 4 (lower is better)
Translates to: GASLASIQGSFLSKLESTGVHCT*PESVPQ
Trigger: CTGAGGAACAGACTCTGGTCATGTACAGTGGACACC...AGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGGGTGTCCACTGTACATaGCCAGAGTCTGTTCCTCAG +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARGVHCT*PESVPQ
Trigger: CTGAGGAACAGACTCTGGTCATGTACAGTGGACACC...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGCCATTGAACGGGTTGTaGCAGGATGTCTGGTCTGAC +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARPLNGL*QDVWSD
Trigger: GTCAGACCAGACATCCTGTCACAACCCGTTCAATGG...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTCAGGGTTGGAGGACATaGGGCTCTGGGCCTCTGAGA +
Preference number: 4 (lower is better)
Translates to: PGTSGSGWFCFSWSHNCLQGWRT*GSGPLR
Trigger: TCTCAGAGGCCCAGAGCCTCATGTCCTCCAACCCTG...AAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAACAGATGTGGCCAGATaGTCAGTGACAGCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: RLIPKLCREVRGPLEVELTDVAR*SVTARS
Trigger: GGACCTGGCTGTCACTGATCATCTGGCCACATCTGT...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTACAGATGTGGCCAGATaGTCAGTGACAGCCAGGTCC +
Preference number: 4 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFTDVAR*SVTARS
Trigger: GGACCTGGCTGTCACTGATCATCTGGCCACATCTGT...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATCTGCCAAGTTCTCGATaGCCAGGTACCGACGACCAG +
Preference number: 4 (lower is better)
Translates to: AHSVILLCHVLPAIATWHLPSSR*PGTDDQ
Trigger: CTGGTCGTCGGTACCTGGGCATCGAGAACTTGGCAG...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CCCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTCCAACGATGGCTGCTaGCTTGGCTTGAGCCCCACT +
Preference number: 4 (lower is better)
Translates to: PRDLWKWLVLFFMVTQLPSNDGC*LGLSPT
Trigger: AGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGA...AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp AGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGGTCCAATCATGCTCTCTCCCCTaGTTCCAGTGCTCAGGGTCA +
Preference number: 4 (lower is better)
Translates to: RALGYWNTPLKDWRTWVQSCSLP*FQCSGS
Trigger: TGACCCTGAGCACTGGAAGCAGGGGAGAGAGCATGA...TTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGTGCCCGTGTCCGGCATaGGTACTGATCAATTGGGTA +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARCPCPA*VLINWV
Trigger: TACCCAATTGATCAGTACCCATGCCGGACACGGGCA...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGGCCACACGGCCTTTCTaGTCTGAGTACAGGATCCTT +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARATRPF*SEYRIL
Trigger: AAGGATCCTGTACTCAGACCAGAAAGGCCGTGTGGC...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTCCACTCACATCATGGTaGTCACGGCTCAGGACCACT +
Preference number: 4 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFPLTSW*SRLRTT
Trigger: AGTGGTCCTGAGCCGTGACCACCATGATGTGAGTGG...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CAA 72 bp CTGGCCACTTTGCCTCAGAGACTCTGTTATCCACTCTaGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTAC +
Preference number: 4 (lower is better)
Translates to: LATLPQRLCYPL*LAQSVPCVWLY
Trigger: GTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAGTCTCTGAGGCAAAGTGGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CAA 72 bp AATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTaGGCATTGTTGCCAGAGGCCCAAAGCAACACGACT +
Preference number: 4 (lower is better)
Translates to: NFALPCAPCHCH*ALLPEAQSNTT
Trigger: AGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTGGTAGTAGCCGCCATTaGACGGGTTGTGACAGGATG +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSGSSRH*TGCDRM
Trigger: CATCCTGTCACAACCCGTTCAATGGCGGCTACTACC...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CCCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTATTCGAAGTCTCCCTaGAGGGGCTGTCAGTGCCAC +
Preference number: 4 (lower is better)
Translates to: PRDLWKWLVLFFMVTQLPYSKSP*RGCQCH
Trigger: GTGGCACTGACAGCCCCTTCAGGGAGACTTCGAATA...AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp AGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGGTCCAATGGAGACATCCCAGCTaGGCATCATCCTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: RALGYWNTPLKDWRTWVQWRHPS*ASSWLS
Trigger: AGAAAGCCAGGATGATGCTCAGCTGGGATGTCTCCA...TTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGAGACATCCCAGCTaGGCATCATCCTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTWRHPS*ASSWLS
Trigger: AGAAAGCCAGGATGATGCTCAGCTGGGATGTCTCCA...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGAGGCTCTCATCTCAATaGTGGGGCAGAACCGGTACA +
Preference number: 4 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLRLSSQ*WGRTGT
Trigger: TGTACCGGTTCTGCCCCAGCATTGAGATGAGAGCCT...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTACAATGTAGCAGTAGCTaGCCGCTGTCATCTGGCCAT +
Preference number: 4 (lower is better)
Translates to: RLIPKLCREVRGPLEVELQCSSS*PLSSGH
Trigger: ATGGCCAGATGACAGCGGGCAGCTACTGCTACATTG...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTCCATCAGCCAGCCTTaGCGGTGGCGTTTTACAAGT +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTSISQP*RWRFTS
Trigger: ACTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGA...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CCCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTTGATGGCTGCGACATaGCTCCTCAGGCTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: PRDLWKWLVLFFMVTQLPLMAAT*LLRLSC
Trigger: GCAGGAAAGCCTGAGGAGGCATGTCGCAGCCATCAA...AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CCCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTGAATGGCCCAAGTCATaGTCTCTCCCCTGCTTCCAG +
Preference number: 4 (lower is better)
Translates to: PRDLWKWLVLFFMVTQLPEWPKS*SLPCFQ
Trigger: CTGGAAGCAGGGGAGAGAGCATGACTTGGGCCATTC...AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGAACTGTCTTAGCTCCTaGGCAAACTCCAGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLNCLSS*ANSRAN
Trigger: GTTGGCCCTGGAGTTTGCCCAGGAGCTAAGACAGTT...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTCCACTGGCGATGGCCTaGTTAATGGCCACAGCAATG +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSPLAMA*LMATAM
Trigger: CATTGCTGTGGCCATTAACCAGGCCATCGCCAGTGG...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTGAAGTGCAACCCAGGTaGCACCACGACAGGCATCTC +
Preference number: 4 (lower is better)
Translates to: PGTSGSGWFCFSWSHNCLEVQPR*HHDRHL
Trigger: GAGATGCCTGTCGTGGTGCCACCTGGGTTGCACTTC...AAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTATTTTCCTTGCTTCCCTaGGTCTTGCAATGCAGCGGT +
Preference number: 4 (lower is better)
Translates to: RLIPKLCREVRGPLEVELFSLLP*VLQCSG
Trigger: ACCGCTGCATTGCAAGACTCAGGGAAGCAAGGAAAA...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046128.12
CDS-3UTR TCA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATCCATTGAACGGGTTGTaGCAGGATGTCTGGTCTGAC +
Preference number: 4 (lower is better)
Translates to: AHSVILLCHVLPAIATWHPLNGL*QDVWSD
Trigger: GTCAGACCAGACATCCTGTCACAACCCGTTCAATGG...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTGCATTGTCTGGCAGATaGTCTCATAGGCCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSALSGR*SHRPWG
Trigger: ACCCCAAGGCCTATGAGATCATCTGCCAGACAATGC...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGTTCTCCTCAGGCTTTCCTaGACCAGGTGCTTGAAGGCA +
Preference number: 4 (lower is better)
Translates to: QHSRFLPIQAGVYSYRPVLLRLS*TRCLKA
Trigger: TGCCTTCAAGCACCTGGTGCAGGAAAGCCTGAGGAG...AACAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTATCATCCTGGCTTTCTaGTCAGCCTCTGCAGTTCCA +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTIILAF*SASAVP
Trigger: TGGAACTGCAGAGGCTGAGCAGAAAGCCAGGATGAT...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATACCGTACCTGAGTCTTaGAATGCAGCGGTCCAAGCT +
Preference number: 4 (lower is better)
Translates to: AHSVILLCHVLPAIATWHTVPES*NAAVQA
Trigger: AGCTTGGACCGCTGCATTGCAAGACTCAGGTACGGT...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTAACTGTCTTAGCTCCTaGGCAAACTCCAGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSNCLSS*ANSRAN
Trigger: GTTGGCCCTGGAGTTTGCCCAGGAGCTAAGACAGTT...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATTGCCCGTGTCCGGCATaGGTACTGATCAATTGGGTA +
Preference number: 4 (lower is better)
Translates to: AHSVILLCHVLPAIATWHCPCPA*VLINWV
Trigger: TACCCAATTGATCAGTACCCATGCCGGACACGGGCA...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGTTCCACTGGCGATGGCCTaGTTAATGGCCACAGCAATG +
Preference number: 4 (lower is better)
Translates to: QHSRFLPIQAGVYSYRPVPLAMA*LMATAM
Trigger: CATTGCTGTGGCCATTAACCAGGCCATCGCCAGTGG...AACAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
3UTR CAA 72 bp AGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTaGGGTCCAAGCGTCTCTTCTTTCTTCCTGGCTCAT +
Preference number: 4 (lower is better)
Translates to: RLLEHTLEGLED*GPSVSSFFLAH
Trigger: ATGAGCCAGGAAGAAAGAAGAGACGCTTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGTTGACAAAGACCTTCCCTaGCAAGTTCTCGATGCCCAG +
Preference number: 4 (lower is better)
Translates to: QHSRFLPIQAGVYSYRPVDKDLP*QVLDAQ
Trigger: CTGGGCATCGAGAACTTGGCAGGGAAGGTCTTTGTC...AACAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTGTGGCGTTTTACAAGTaGAGCTTTATCCACCTCCGC +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSVAFYK*SFIHLR
Trigger: GCGGAGGTGGATAAAGCTGCACTTGTAAAACGCCAC...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTCTCTCATCTCAATGCTaGGGCAGAACCGGTACATGT +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSLSSQC*GRTGTC
Trigger: ACATGTACCGGTTCTGCCCCAGCATTGAGATGAGAG...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GAATCTTGTGAGGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCGGAACTCCATCTTGTTaGCTCCTTTCTTCTCTACAT +
Preference number: 4 (lower is better)
Translates to: ESCEAGASLASIQGSFLSGTPSC*LLSSLH
Trigger: ATGTAGAGAAGAAAGGAGCCAACAAGATGGAGTTCC...GGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCCTCACAAGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR TCA 90 bp AGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTTTACGGCCTTTCTGGTCTaGGTACAGGATCCTTGCCTG +
Preference number: 4 (lower is better)
Translates to: RDLWKWLVLFFMVTQLPFTAFLV*VQDPCL
Trigger: CAGGCAAGGATCCTGTACTCAGACCAGAAAGGCCGT...AAAAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CTCTGTTATCCACTCTTGCTAGCCCAGTCTGTGCCATGTGTTTGGCTCTACTCTTTGTTCATGATCATGTaGATGATGGCTGCAGCTGCC +
Preference number: 4 (lower is better)
Translates to: LCYPLLLAQSVPCVWLYSLFMIM*MMAAAA
Trigger: GGCAGCTGCAGCCATCATGCACATGATCATGAACAA...AGAGTAGAGCCAAACACATGGCACAGACTGGGCTAGCAAGAGTGGATAACAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGTGGGTACTGATCAATTaGGTAGGCTCTCATCTCAAT +
Preference number: 4 (lower is better)
Translates to: AYSKAVQGGEGTFRSGARWVLIN*VGSHLN
Trigger: ATTGAGATGAGAGCCTACCCAATTGATCAGTACCCA...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTAGGGAAAGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTAAGAAGAACTTCTCTTaGGCCAACCTGTTGATGGCT +
Preference number: 4 (lower is better)
Translates to: ARERALGYWNTPLKDWRTKKNFS*ANLLMA
Trigger: AGCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTT...AGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCTTTCCCTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGTCACTCCATCAGCAATaGCTTTCTCCAGTACAGATG +
Preference number: 4 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLSLHQQ*LSPVQM
Trigger: CATCTGTACTGGAGAAAGCCATTGCTGATGGAGTGA...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp AGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTTTAGGCTCTCATCTCAATaGTGGGGCAGAACCGGTACA +
Preference number: 4 (lower is better)
Translates to: RDLWKWLVLFFMVTQLPFRLSSQ*WGRTGT
Trigger: TGTACCGGTTCTGCCCCAGCATTGAGATGAGAGCCT...AAAAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp AGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTTTGACAAAGACCTTCCCTaGCAAGTTCTCGATGCCCAG +
Preference number: 4 (lower is better)
Translates to: RDLWKWLVLFFMVTQLPFDKDLP*QVLDAQ
Trigger: CTGGGCATCGAGAACTTGGCAGGGAAGGTCTTTGTC...AAAAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTATGGGTACTGATCAATTaGGTAGGCTCTCATCTCAAT +
Preference number: 4 (lower is better)
Translates to: RLIPKLCREVRGPLEVELWVLIN*VGSHLN
Trigger: ATTGAGATGAGAGCCTACCCAATTGATCAGTACCCA...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATTCACTCCATCAGCAATaGCTTTCTCCAGTACAGATG +
Preference number: 4 (lower is better)
Translates to: AHSVILLCHVLPAIATWHSLHQQ*LSPVQM
Trigger: CATCTGTACTGGAGAAAGCCATTGCTGATGGAGTGA...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp AGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTTTGCCACACGGCCTTTCTaGTCTGAGTACAGGATCCTT +
Preference number: 4 (lower is better)
Translates to: RDLWKWLVLFFMVTQLPFATRPF*SEYRIL
Trigger: AAGGATCCTGTACTCAGACCAGAAAGGCCGTGTGGC...AAAAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp CCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTAAGAAGAACTTCTCTTaGGCCAACCTGTTGATGGCT +
Preference number: 4 (lower is better)
Translates to: PGTSGSGWFCFSWSHNCLKKNFS*ANLLMA
Trigger: AGCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTT...AAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATGGAACTCCATCTTGTTaGCTCCTTTCTTCTCTACAT +
Preference number: 4 (lower is better)
Translates to: AHSVILLCHVLPAIATWHGTPSC*LLSSLH
Trigger: ATGTAGAGAAGAAAGGAGCCAACAAGATGGAGTTCC...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CCA 90 bp AGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTTTACATCAGGCACTGAATaGCCCAAGTCATGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: RDLWKWLVLFFMVTQLPFTSGTE*PKSCSL
Trigger: GAGAGAGCATGACTTGGGCCATTCAGTGCCTGATGT...AAAAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
3UTR CAA 72 bp GCAAGAAACATAGACCAAAATGCCAGAAAGCCGATTTaGACCTCTGCTATGGCTGCAGATGGGCTAAAGGCT +
Preference number: 4 (lower is better)
Translates to: ARNIDQNARKPI*TSAMAADGLKA
Trigger: AGCCTTTAGCCCATCTGCAGCCATAGCAGAGGTCAAAATCGGCTTTCTGGCATTTTGGTCTATGTTTCTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR GCA 90 bp CAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGTTCTCCTTCTTTTTCCTTaGTTCCCTGTGGTCAAACAT +
Preference number: 4 (lower is better)
Translates to: QHSRFLPIQAGVYSYRPVLLLFP*FPVVKH
Trigger: ATGTTTGACCACAGGGAAGCAAGGAAAAAGAAGGAG...AACAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS CCA 90 bp GGAGGAGTAGTTGGGAATGACCATCCCGTTAGTGATGACCAGCCGTaGGGCACGGGGGCTGCTGGGGAAGAGGCCCAGAGGGTGTCCACT +
Preference number: 5 (lower is better)
Translates to: GGVVGNDHPVSDDQP*GTGAAGEEAQRVST
Trigger: AGTGGACACCCTCTGGGCCTCTTCCCCAGCAGCCCCCGTGCCCCACGGCTGGTCATCACTAACGGGATGGTCATTCCCAACTACTCCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp CTGCTGCCTTGGCTTGAGCCCCACTCATCCCGCCAAGCCCAGAGGTaGCAAAGACCTTCCCTGCCAAGTTCTCGATGCCCAGGTACCGAC +
Preference number: 5 (lower is better)
Translates to: LLPWLEPHSSRQAQR*QRPSLPSSRCPGTD
Trigger: GTCGGTACCTGGGCATCGAGAACTTGGCAGGGAAGGTCTTTGTCACCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp AGCCCCACTCATCCCGCCAAGCCCAGAGGTGACAAAGACCTTCCCTaGCAAGTTCTCGATGCCCAGGTACCGACGACCAGCATTCAGCAC +
Preference number: 5 (lower is better)
Translates to: SPTHPAKPRGDKDLP*QVLDAQVPTTSIQH
Trigger: GTGCTGAATGCTGGTCGTCGGTACCTGGGCATCGAGAACTTGGCAGGGAAGGTCTTTGTCACCTCTGGGCTTGGCGGGATGAGTGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp GTGCAGCTTTATCCACCTCCGCAATCACCCCAATGCATCCAACGATaGCTGCTGCCTTGGCTTGAGCCCCACTCATCCCGCCAAGCCCAG +
Preference number: 5 (lower is better)
Translates to: VQLYPPPQSPQCIQR*LLPWLEPHSSRQAQ
Trigger: CTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTGCGGAGGTGGATAAAGCTGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp CGGCTCAGGACCACTGGTGCCTTGATCTTCCCACTGGCGATGGCCTaGTTAATGGCCACAGCAATGGCCACACGGCCTTTCTGGTCTGAG +
Preference number: 5 (lower is better)
Translates to: RLRTTGALIFPLAMA*LMATAMATRPFWSE
Trigger: CTCAGACCAGAAAGGCCGTGTGGCCATTGCTGTGGCCATTAACCAGGCCATCGCCAGTGGGAAGATCAAGGCACCAGTGGTCCTGAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp CTTCACCCCAGCCTACACCCCCTCCATTGTGAAGTGCAACCCAGGTaGCACCACGACAGGCATCTCCCACGAAGTTCTGCACGGCCATGT +
Preference number: 5 (lower is better)
Translates to: LHPSLHPLHCEVQPR*HHDRHLPRSSARPC
Trigger: ACATGGCCGTGCAGAACTTCGTGGGAGATGCCTGTCGTGGTGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGTAGGCTGGGGTGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp GGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCCGTCGTGCCACACCATaGGAGACATCCCAGCTGAGC +
Preference number: 5 (lower is better)
Translates to: GGCQLGQHSRFLPIQAGVRRATP*ETSQLS
Trigger: GCTCAGCTGGGATGTCTCCAATGGTGTGGCACGACG...GACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp CACGGGGGCTGCTGGGGAAGAGGCCCAGAGGGTGTCCACTGTACATaGCCAGAGTCTGTTCCTCAGTCATCTTCGACAGGTAGGACATGG +
Preference number: 5 (lower is better)
Translates to: HGGCWGRGPEGVHCT*PESVPQSSSTGRTW
Trigger: CCATGTCCTACCTGTCGAAGATGACTGAGGAACAGACTCTGGTCATGTACAGTGGACACCCTCTGGGCCTCTTCCCCAGCAGCCCCCGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp TCCGCAATCACCCCAATGCATCCAACGATGGCTGCTGCCTTGGCTTaGGCCCCACTCATCCCGCCAAGCCCAGAGGTGACAAAGACCTTC +
Preference number: 5 (lower is better)
Translates to: SAITPMHPTMAAALA*APLIPPSPEVTKTF
Trigger: GAAGGTCTTTGTCACCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTGCGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp GTGCTTGAAGGCAGCAGGGTTGGAGGACATGAGGCTCTGGGCCTCTaGGAAGCTGAGCTGCACAGGGTAGTAGCCGCCATTGAACGGGTT +
Preference number: 5 (lower is better)
Translates to: VLEGSRVGGHEALGL*EAELHRVVAAIERV
Trigger: AACCCGTTCAATGGCGGCTACTACCCTGTGCAGCTCAGCTTCTCAGAGGCCCAGAGCCTCATGTCCTCCAACCCTGCTGCCTTCAAGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp AGATGTGGCCAGATGATCAGTGACAGCCAGGTCCTGGGGGTCCCCTaGTGTGCATACCCAGCGGAAGGGCCCAAAGCCCTGGGAGAATAT +
Preference number: 5 (lower is better)
Translates to: RCGQMISDSQVLGVP*CAYPAEGPKALGEY
Trigger: ATATTCTCCCAGGGCTTTGGGCCCTTCCGCTGGGTATGCACATCAGGGGACCCCCAGGACCTGGCTGTCACTGATCATCTGGCCACATCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp GGCCTGGTTAATGGCCACAGCAATGGCCACACGGCCTTTCTGGTCTaGGTACAGGATCCTTGCCTGGGAGCCCACCACCAGCTGATGCTT +
Preference number: 5 (lower is better)
Translates to: GLVNGHSNGHTAFLV*VQDPCLGAHHQLML
Trigger: AAGCATCAGCTGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAAGGCCGTGTGGCCATTGCTGTGGCCATTAACCAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp TTTATCCACCTCCGCAATCACCCCAATGCATCCAACGATGGCTGCTaGCTTGGCTTGAGCCCCACTCATCCCGCCAAGCCCAGAGGTGAC +
Preference number: 5 (lower is better)
Translates to: FIHLRNHPNASNDGC*LGLSPTHPAKPRGD
Trigger: GTCACCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTGCGGAGGTGGATAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp AGCTTTATCCACCTCCGCAATCACCCCAATGCATCCAACGATGGCTaGTGCCTTGGCTTGAGCCCCACTCATCCCGCCAAGCCCAGAGGT +
Preference number: 5 (lower is better)
Translates to: SFIHLRNHPNASNDG*CLGLSPTHPAKPRG
Trigger: ACCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTGCGGAGGTGGATAAAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp TTCGAAGTCTCCCTGAAGGGGCTGTCAGTGCCACTCACATCATGGTaGTCACGGCTCAGGACCACTGGTGCCTTGATCTTCCCACTGGCG +
Preference number: 5 (lower is better)
Translates to: FEVSLKGLSVPLTSW*SRLRTTGALIFPLA
Trigger: CGCCAGTGGGAAGATCAAGGCACCAGTGGTCCTGAGCCGTGACCACCATGATGTGAGTGGCACTGACAGCCCCTTCAGGGAGACTTCGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp CCCATTGATGACTTCACCCCAGCCTACACCCCCTCCATTGTGAAGTaGAACCCAGGTGGCACCACGACAGGCATCTCCCACGAAGTTCTG +
Preference number: 5 (lower is better)
Translates to: PIDDFTPAYTPSIVK*NPGGTTTGISHEVL
Trigger: CAGAACTTCGTGGGAGATGCCTGTCGTGGTGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGTAGGCTGGGGTGAAGTCATCAATGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp CAGCGGTCCAAGCTGTCTGTCACCTCCATCAGCCAGCCTTGCCGGTaGCGTTTTACAAGTGCAGCTTTATCCACCTCCGCAATCACCCCA +
Preference number: 5 (lower is better)
Translates to: QRSKLSVTSISQPCR*RFTSAALSTSAITP
Trigger: TGGGGTGATTGCGGAGGTGGATAAAGCTGCACTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGAGGTGACAGACAGCTTGGACCGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CCCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTGGCTGCTGCCTTGGCTaGAGCCCCACTCATCCCGCC +
Preference number: 5 (lower is better)
Translates to: PRDLWKWLVLFFMVTQLPGCCLG*SPTHPA
Trigger: GGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCC...AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp TGTGCTCCCTGCCATTGCCACTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGAGGACCACTGGTGCCTaGATCTTCCCACTGGCGATG +
Preference number: 5 (lower is better)
Translates to: CAPCHCHLALLPEAQSNTRTTGA*IFPLAM
Trigger: CATCGCCAGTGGGAAGATCAAGGCACCAGTGGTCCT...CGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAGTGGCAATGGCAGGGAGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp AGGGTAGTAGCCGCCATTGAACGGGTTGTGACAGGATGTCTGGTCTaGCCCGAGGTCCACCAAGAGTTCCCCCGTTGTGTCCAGTTCATG +
Preference number: 5 (lower is better)
Translates to: RVVAAIERVVTGCLV*PEVHQEFPRCVQFM
Trigger: CATGAACTGGACACAACGGGGGAACTCTTGGTGGACCTCGGGTCAGACCAGACATCCTGTCACAACCCGTTCAATGGCGGCTACTACCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp CATCAGCAATGGCTTTCTCCAGTACAGATGTGGCCAGATGATCAGTaGCAGCCAGGTCCTGGGGGTCCCCTGATGTGCATACCCAGCGGA +
Preference number: 5 (lower is better)
Translates to: HQQWLSPVQMWPDDQ*QPGPGGPLMCIPSG
Trigger: TCCGCTGGGTATGCACATCAGGGGACCCCCAGGACCTGGCTGTCACTGATCATCTGGCCACATCTGTACTGGAGAAAGCCATTGCTGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp GGCCACAGCAGGGTCCAAGTTGTTCATGATCATGTGCATGATGGCTaGAGCTGCCCGTGTCCGGCATGGGTACTGATCAATTGGGTAGGC +
Preference number: 5 (lower is better)
Translates to: GHSRVQVVHDHVHDG*SCPCPAWVLINWVG
Trigger: GCCTACCCAATTGATCAGTACCCATGCCGGACACGGGCAGCTGCAGCCATCATGCACATGATCATGAACAACTTGGACCCTGCTGTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp CAGAAGAAGAACTTCTCTTGGGCCAACCTGTTGATGGCTGCGACATaGCTCCTCAGGCTTTCCTGCACCAGGTGCTTGAAGGCAGCAGGG +
Preference number: 5 (lower is better)
Translates to: QKKNFSWANLLMAAT*LLRLSCTRCLKAAG
Trigger: CCCTGCTGCCTTCAAGCACCTGGTGCAGGAAAGCCTGAGGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp GGTCAAGTGTTCTGGGTCCCATACAGCCAAACCGTACCTGAGTCTTaGAATGCAGCGGTCCAAGCTGTCTGTCACCTCCATCAGCCAGCC +
Preference number: 5 (lower is better)
Translates to: GQVFWVPYSQTVPES*NAAVQAVCHLHQPA
Trigger: GGCTGGCTGATGGAGGTGACAGACAGCTTGGACCGCTGCATTGCAAGACTCAGGTACGGTTTGGCTGTATGGGACCCAGAACACTTGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGCTGAGTACAGGATCCTaGCCTGGGAGCCCACCACCA +
Preference number: 5 (lower is better)
Translates to: LGIVARGPKQHDFLILRGLSTGS*PGSPPP
Trigger: TGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAG...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGCGTCGTGCCACACCATaGGAGACATCCCAGCTGAGC +
Preference number: 5 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRRRATP*ETSQLS
Trigger: GCTCAGCTGGGATGTCTCCAATGGTGTGGCACGACG...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp GGTCAAACATCAGGCACTGAATGGCCCAAGTCATGCTCTCTCCCCTaGTTCCAGTGCTCAGGGTCAAGTGTTCTGGGTCCCATACAGCCA +
Preference number: 5 (lower is better)
Translates to: GQTSGTEWPKSCSLP*FQCSGSSVLGPIQP
Trigger: TGGCTGTATGGGACCCAGAACACTTGACCCTGAGCACTGGAAGCAGGGGAGAGAGCATGACTTGGGCCATTCAGTGCCTGATGTTTGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS CCA 90 bp CATGATGGCTGCAGCTGCCCGTGTCCGGCATGGGTACTGATCAATTaGGTAGGCTCTCATCTCAATGCTGGGGCAGAACCGGTACATGTA +
Preference number: 5 (lower is better)
Translates to: HDGCSCPCPAWVLIN*VGSHLNAGAEPVHV
Trigger: TACATGTACCGGTTCTGCCCCAGCATTGAGATGAGAGCCTACCCAATTGATCAGTACCCATGCCGGACACGGGCAGCTGCAGCCATCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp GTTGCTGAACACTTGCCCGTTGCCTCCGTAGGTCACCAGCTCCTGTaGAAACTGGGCCACAGCAGGGTCCAAGTTGTTCATGATCATGTG +
Preference number: 5 (lower is better)
Translates to: VAEHLPVASVGHQLL*KLGHSRVQVVHDHV
Trigger: CACATGATCATGAACAACTTGGACCCTGCTGTGGCCCAGTTTCCACAGGAGCTGGTGACCTACGGAGGCAACGGGCAAGTGTTCAGCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp ATATTCGAAGTCTCCCTGAAGGGGCTGTCAGTGCCACTCACATCATaGTGGTCACGGCTCAGGACCACTGGTGCCTTGATCTTCCCACTG +
Preference number: 5 (lower is better)
Translates to: IFEVSLKGLSVPLTS*WSRLRTTGALIFPL
Trigger: CAGTGGGAAGATCAAGGCACCAGTGGTCCTGAGCCGTGACCACCATGATGTGAGTGGCACTGACAGCCCCTTCAGGGAGACTTCGAATAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp AGTCATGCTCTCTCCCCTGCTTCCAGTGCTCAGGGTCAAGTGTTCTaGGTCCCATACAGCCAAACCGTACCTGAGTCTTGCAATGCAGCG +
Preference number: 5 (lower is better)
Translates to: SHALSPASSAQGQVF*VPYSQTVPESCNAA
Trigger: CGCTGCATTGCAAGACTCAGGTACGGTTTGGCTGTATGGGACCCAGAACACTTGACCCTGAGCACTGGAAGCAGGGGAGAGAGCATGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CTTGGCATTGTTGCCAGAGGCCCAAAGCAACACGACTTCCTTATCTTGCGTGGGCCAGTTGCTGAACACTaGCCCGTTGCCTCCGTAGGT +
Preference number: 5 (lower is better)
Translates to: LGIVARGPKQHDFLILRGPVAEH*PVASVG
Trigger: ACCTACGGAGGCAACGGGCAAGTGTTCAGCAACTGG...CCCACGCAAGATAAGGAAGTCGTGTTGCTTTGGGCCTCTGGCAACAATGCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGCTCCATCAGCCAGCCTaGCCGGTGGCGTTTTACAAG +
Preference number: 5 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRLHQPA*PVAFYK
Trigger: CTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGAG...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp TTCACTCCATCAGCAATGGCTTTCTCCAGTACAGATGTGGCCAGATaGTCAGTGACAGCCAGGTCCTGGGGGTCCCCTGATGTGCATACC +
Preference number: 5 (lower is better)
Translates to: FTPSAMAFSSTDVAR*SVTARSWGSPDVHT
Trigger: GGTATGCACATCAGGGGACCCCCAGGACCTGGCTGTCACTGATCATCTGGCCACATCTGTACTGGAGAAAGCCATTGCTGATGGAGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp TGCTCAGGGTCAAGTGTTCTGGGTCCCATACAGCCAAACCGTACCTaGGTCTTGCAATGCAGCGGTCCAAGCTGTCTGTCACCTCCATCA +
Preference number: 5 (lower is better)
Translates to: CSGSSVLGPIQPNRT*VLQCSGPSCLSPPS
Trigger: TGATGGAGGTGACAGACAGCTTGGACCGCTGCATTGCAAGACTCAGGTACGGTTTGGCTGTATGGGACCCAGAACACTTGACCCTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS GCA 90 bp GTCTGTCACCTCCATCAGCCAGCCTTGCCGGTGGCGTTTTACAAGTaGAGCTTTATCCACCTCCGCAATCACCCCAATGCATCCAACGAT +
Preference number: 5 (lower is better)
Translates to: VCHLHQPALPVAFYK*SFIHLRNHPNASND
Trigger: ATCGTTGGATGCATTGGGGTGATTGCGGAGGTGGATAAAGCTGCACTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGAGGTGACAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp ATAGTCCCAGAAGAAGAACTTCTCTTGGGCCAACCTGTTGATGGCTaGGACATGCCTCCTCAGGCTTTCCTGCACCAGGTGCTTGAAGGC +
Preference number: 5 (lower is better)
Translates to: IVPEEELLLGQPVDG*DMPPQAFLHQVLEG
Trigger: GCCTTCAAGCACCTGGTGCAGGAAAGCCTGAGGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTTCTGGGACTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp GCCACACCATTGGAGACATCCCAGCTGAGCATCATCCTGGCTTTCTaGTCAGCCTCTGCAGTTCCATCTAGAACAAGGCCAAATCCCCCA +
Preference number: 5 (lower is better)
Translates to: ATPLETSQLSIILAF*SASAVPSRTRPNPP
Trigger: TGGGGGATTTGGCCTTGTTCTAGATGGAACTGCAGAGGCTGAGCAGAAAGCCAGGATGATGCTCAGCTGGGATGTCTCCAATGGTGTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp TTGCTTCCCTGTGGTCAAACATCAGGCACTGAATGGCCCAAGTCATaGTCTCTCCCCTGCTTCCAGTGCTCAGGGTCAAGTGTTCTGGGT +
Preference number: 5 (lower is better)
Translates to: LLPCGQTSGTEWPKS*SLPCFQCSGSSVLG
Trigger: ACCCAGAACACTTGACCCTGAGCACTGGAAGCAGGGGAGAGAGCATGACTTGGGCCATTCAGTGCCTGATGTTTGACCACAGGGAAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS CCA 90 bp GTTCATGATCATGTGCATGATGGCTGCAGCTGCCCGTGTCCGGCATaGGTACTGATCAATTGGGTAGGCTCTCATCTCAATGCTGGGGCA +
Preference number: 5 (lower is better)
Translates to: VHDHVHDGCSCPCPA*VLINWVGSHLNAGA
Trigger: TGCCCCAGCATTGAGATGAGAGCCTACCCAATTGATCAGTACCCATGCCGGACACGGGCAGCTGCAGCCATCATGCACATGATCATGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp AGGCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTACTCCATCAGCCAGCCTaGCCGGTGGCGTTTTACAAG +
Preference number: 5 (lower is better)
Translates to: RLIPKLCREVRGPLEVELLHQPA*PVAFYK
Trigger: CTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGAG...TAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTTCTTGGGCCAACCTGTaGATGGCTGCGACATGCCTC +
Preference number: 5 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFSWANL*MAATCL
Trigger: GAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGA...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp AGGGCTTTAGGCTACTGGAACACACCCTTGAAGGATTGGAGGACTTGGGTCCAAAGGACCACTGGTGCCTaGATCTTCCCACTGGCGATG +
Preference number: 5 (lower is better)
Translates to: RALGYWNTPLKDWRTWVQRTTGA*IFPLAM
Trigger: CATCGCCAGTGGGAAGATCAAGGCACCAGTGGTCCT...TTGGACCCAAGTCCTCCAATCCTTCAAGGGTGTGTTCCAGTAGCCTAAAGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 90 bp CATTACCATAGTCCCAGAAGAAGAACTTCTCTTGGGCCAACCTGTTaGTGGCTGCGACATGCCTCCTCAGGCTTTCCTGCACCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: HYHSPRRRTSLGPTC*WLRHASSGFPAPGA
Trigger: AGCACCTGGTGCAGGAAAGCCTGAGGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTTCTGGGACTATGGTAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp AGCAGGGTCCAAGTTGTTCATGATCATGTGCATGATGGCTGCAGCTaGCCGTGTCCGGCATGGGTACTGATCAATTGGGTAGGCTCTCAT +
Preference number: 5 (lower is better)
Translates to: SRVQVVHDHVHDGCS*PCPAWVLINWVGSH
Trigger: ATGAGAGCCTACCCAATTGATCAGTACCCATGCCGGACACGGGCAGCTGCAGCCATCATGCACATGATCATGAACAACTTGGACCCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CCCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTCCAGTTGCTGAACACTaGCCCGTTGCCTCCGTAGGT +
Preference number: 5 (lower is better)
Translates to: PRDLWKWLVLFFMVTQLPPVAEH*PVASVG
Trigger: ACCTACGGAGGCAACGGGCAAGTGTTCAGCAACTGG...AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp GCTCATAGTGTAATTTTGCTCTGCCATGTGCTCCCTGCCATTGCCACTTGGCATTCTTGGGCCAACCTGTaGATGGCTGCGACATGCCTC +
Preference number: 5 (lower is better)
Translates to: AHSVILLCHVLPAIATWHSWANL*MAATCL
Trigger: GAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGA...ATGCCAAGTGGCAATGGCAGGGAGCACATGGCAGAGCAAAATTACACTATGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGAGGCCAAATCCCCCATaGATGACTTCACCCCAGCCT +
Preference number: 5 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLRPNPP*MTSPQP
Trigger: AGGCTGGGGTGAAGTCATCAATGGGGGATTTGGCCT...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp CACGTTGCCATGGTAGCCGAGGCTGAGAACCTCCTTCTTTTTCCTTaGTTCCCTGTGGTCAAACATCAGGCACTGAATGGCCCAAGTCAT +
Preference number: 5 (lower is better)
Translates to: HVAMVAEAENLLLFP*FPVVKHQALNGPSH
Trigger: ATGACTTGGGCCATTCAGTGCCTGATGTTTGACCACAGGGAAGCAAGGAAAAAGAAGGAGGTTCTCAGCCTCGGCTACCATGGCAACGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp GCTTATTCCAAAGCTGTGCAGGGAGGTGAGGGGACCTTTAGAAGTGGAGCTAGGGAAGAAGAACTTCTCTaGGGCCAACCTGTTGATGGC +
Preference number: 5 (lower is better)
Translates to: AYSKAVQGGEGTFRSGAREEELL*GQPVDG
Trigger: GCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTTC...CCTAGCTCCACTTCTAAAGGTCCCCTCACCTCCCTGCACAGCTTTGGAATAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp GAATCTTGTGAGGCGGGTGCCAGCTTGGCCAGCATTCAAGGTTCCTTCCTATCCCGGAACTCCATCTTGTaGGCTCCTTTCTTCTCTACA +
Preference number: 5 (lower is better)
Translates to: ESCEAGASLASIQGSFLSRNSIL*APFFST
Trigger: TGTAGAGAAGAAAGGAGCCAACAAGATGGAGTTCCG...GGATAGGAAGGAACCTTGAATGCTGGCCAAGCTGGCACCCGCCTCACAAGATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CCTGTCTATCTTCCCCCATACTCCTCAGCACCAAGGACTTGGTGTGAGCACTTTGAAGAAGAACTTCTCTaGGGCCAACCTGTTGATGGC +
Preference number: 5 (lower is better)
Translates to: PVYLPPYSSAPRTWCEHFEEELL*GQPVDG
Trigger: GCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTTC...AAAGTGCTCACACCAAGTCCTTGGTGCTGAGGAGTATGGGGGAAGATAGACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CTCTGCTATGGCTGCAGATGGGCTAAAGGCTTATTCCAAAGCTGTGCAGGGAGGCGGAACTCCATCTTGTaGGCTCCTTTCTTCTCTACA +
Preference number: 5 (lower is better)
Translates to: LCYGCRWAKGLFQSCAGRRNSIL*APFFST
Trigger: TGTAGAGAAGAAAGGAGCCAACAAGATGGAGTTCCG...CCTCCCTGCACAGCTTTGGAATAAGCCTTTAGCCCATCTGCAGCCATAGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 90 bp GTGTCCGGCATGGGTACTGATCAATTGGGTAGGCTCTCATCTCAATaGTGGGGCAGAACCGGTACATGTAGATGTGTCCAAACTGTCTTA +
Preference number: 5 (lower is better)
Translates to: VSGMGTDQLGRLSSQ*WGRTGTCRCVQTVL
Trigger: TAAGACAGTTTGGACACATCTACATGTACCGGTTCTGCCCCAGCATTGAGATGAGAGCCTACCCAATTGATCAGTACCCATGCCGGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 90 bp TCCGGCATGGGTACTGATCAATTGGGTAGGCTCTCATCTCAATGCTaGGGCAGAACCGGTACATGTAGATGTGTCCAAACTGTCTTAGCT +
Preference number: 5 (lower is better)
Translates to: SGMGTDQLGRLSSQC*GRTGTCRCVQTVLA
Trigger: AGCTAAGACAGTTTGGACACATCTACATGTACCGGTTCTGCCCCAGCATTGAGATGAGAGCCTACCCAATTGATCAGTACCCATGCCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp GCCAGCATTCAAGGTTCCTTCCTATCCAAGCTGGAGTCTACTCTTACAGGCCTGACAGCAGGGTCCAAGTaGTTCATGATCATGTGCATG +
Preference number: 5 (lower is better)
Translates to: ASIQGSFLSKLESTLTGLTAGSK*FMIMCM
Trigger: CATGCACATGATCATGAACAACTTGGACCCTGCTGT...CAGGCCTGTAAGAGTAGACTCCAGCTTGGATAGGAAGGAACCTTGAATGCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp CCCAGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTACAGCAGGGTCCAAGTaGTTCATGATCATGTGCATG +
Preference number: 5 (lower is better)
Translates to: PRDLWKWLVLFFMVTQLPTAGSK*FMIMCM
Trigger: CATGCACATGATCATGAACAACTTGGACCCTGCTGT...AGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS-3UTR CAA 90 bp AGGGACCTCTGGAAGTGGTTGGTTCTGTTTTTCATGGTCACACAATTGCCTTTTAGGCCAAATCCCCCATaGATGACTTCACCCCAGCCT +
Preference number: 5 (lower is better)
Translates to: RDLWKWLVLFFMVTQLPFRPNPP*MTSPQP
Trigger: AGGCTGGGGTGAAGTCATCAATGGGGGATTTGGCCT...AAAAGGCAATTGTGTGACCATGAAAAACAGAACCAACCACTTCCAGAGGTCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp GTTGGGAATGACCATCCCGTTAGTGATGACCAGCCGTaGGGCACGGGGGCTGCTGGGGAAGAGGCCCAGAGG +
Preference number: 6 (lower is better)
Translates to: VGNDHPVSDDQP*GTGAAGEEAQR
Trigger: CCTCTGGGCCTCTTCCCCAGCAGCCCCCGTGCCCCACGGCTGGTCATCACTAACGGGATGGTCATTCCCAAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp CAGATGATCAGTGACAGCCAGGTCCTGGGGGTCCCCTaGTGTGCATACCCAGCGGAAGGGCCCAAAGCCCTG +
Preference number: 6 (lower is better)
Translates to: QMISDSQVLGVP*CAYPAEGPKAL
Trigger: CAGGGCTTTGGGCCCTTCCGCTGGGTATGCACATCAGGGGACCCCCAGGACCTGGCTGTCACTGATCATCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp CTCCGCAATCACCCCAATGCATCCAACGATGGCTGCTaGCTTGGCTTGAGCCCCACTCATCCCGCCAAGCCC +
Preference number: 6 (lower is better)
Translates to: LRNHPNASNDGC*LGLSPTHPAKP
Trigger: GGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTGCGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp TTCAGGGCTGAGGTTCGGAGTTCTAACCGGAGCATGTaGCACCCCAGCCCAGCGACCCCGGTTCTCAGGAAG +
Preference number: 6 (lower is better)
Translates to: FRAEVRSSNRSM*HPSPATPVLRK
Trigger: CTTCCTGAGAACCGGGGTCGCTGGGCTGGGGTGCCACATGCTCCGGTTAGAACTCCGAACCTCAGCCCTGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 72 bp CATGGTCAGCCGGAACTGGGCCCAGTTGCTGAACACTaGCCCGTTGCCTCCGTAGGTCACCAGCTCCTGTGG +
Preference number: 6 (lower is better)
Translates to: HGQPELGPVAEH*PVASVGHQLLW
Trigger: CCACAGGAGCTGGTGACCTACGGAGGCAACGGGCAAGTGTTCAGCAACTGGGCCCAGTTCCGGCTGACCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 72 bp CACCCCAATGCATCCAACGATGGCTGCTGCCTTGGCTaGAGCCCCACTCATCCCGCCAAGCCCAGAGGTGAC +
Preference number: 6 (lower is better)
Translates to: HPNASNDGCCLG*SPTHPAKPRGD
Trigger: GTCACCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 90 bp CCACAGCAATGGCCACACGGCCTTTCTGGTCTGAGTACAGGATCCTaGCCTGGGAGCCCACCACCAGCTGATGCTTGGCAGCCTCTCGGA +
Preference number: 6 (lower is better)
Translates to: PQQWPHGLSGLSTGS*PGSPPPADAWQPLG
Trigger: TCCGAGAGGCTGCCAAGCATCAGCTGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAAGGCCGTGTGGCCATTGCTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp ACCCCAATGCATCCAACGATGGCTGCTGCCTTGGCTTaGGCCCCACTCATCCCGCCAAGCCCAGAGGTGACA +
Preference number: 6 (lower is better)
Translates to: TPMHPTMAAALA*APLIPPSPEVT
Trigger: TGTCACCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp CAGGTGGCACCACGACAGGCATCTCCCACGAAGTTCTaGACGGCCATGTCTGCGCAGAAGGCAGAACCGTCA +
Preference number: 6 (lower is better)
Translates to: QVAPRQASPTKF*TAMSAQKAEPS
Trigger: TGACGGTTCTGCCTTCTGCGCAGACATGGCCGTGCAGAACTTCGTGGGAGATGCCTGTCGTGGTGCCACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp GACTTCACCCCAGCCTACACCCCCTCCATTGTGAAGTaGAACCCAGGTGGCACCACGACAGGCATCTCCCAC +
Preference number: 6 (lower is better)
Translates to: DFTPAYTPSIVK*NPGGTTTGISH
Trigger: GTGGGAGATGCCTGTCGTGGTGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGTAGGCTGGGGTGAAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp CAATCACCCCAATGCATCCAACGATGGCTGCTGCCTTaGCTTGAGCCCCACTCATCCCGCCAAGCCCAGAGG +
Preference number: 6 (lower is better)
Translates to: QSPQCIQRWLLP*LEPHSSRQAQR
Trigger: CCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 72 bp TGGCCACACGGCCTTTCTGGTCTGAGTACAGGATCCTaGCCTGGGAGCCCACCACCAGCTGATGCTTGGCAG +
Preference number: 6 (lower is better)
Translates to: WPHGLSGLSTGS*PGSPPPADAWQ
Trigger: CTGCCAAGCATCAGCTGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAAGGCCGTGTGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 90 bp TGCCTCCTCAGGCTTTCCTGCACCAGGTGCTTGAAGGCAGCAGGGTaGGAGGACATGAGGCTCTGGGCCTCTGAGAAGCTGAGCTGCACA +
Preference number: 6 (lower is better)
Translates to: CLLRLSCTRCLKAAG*EDMRLWASEKLSCT
Trigger: TGTGCAGCTCAGCTTCTCAGAGGCCCAGAGCCTCATGTCCTCCAACCCTGCTGCCTTCAAGCACCTGGTGCAGGAAAGCCTGAGGAGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp TGGCTTGAGCCCCACTCATCCCGCCAAGCCCAGAGGTaGCAAAGACCTTCCCTGCCAAGTTCTCGATGCCCA +
Preference number: 6 (lower is better)
Translates to: WLEPHSSRQAQR*QRPSLPSSRCP
Trigger: TGGGCATCGAGAACTTGGCAGGGAAGGTCTTTGTCACCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp AATGGCCACAGCAATGGCCACACGGCCTTTCTGGTCTaGGTACAGGATCCTTGCCTGGGAGCCCACCACCAG +
Preference number: 6 (lower is better)
Translates to: NGHSNGHTAFLV*VQDPCLGAHHQ
Trigger: CTGGTGGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAAGGCCGTGTGGCCATTGCTGTGGCCATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp TATCCACCTCCGCAATCACCCCAATGCATCCAACGATaGCTGCTGCCTTGGCTTGAGCCCCACTCATCCCGC +
Preference number: 6 (lower is better)
Translates to: YPPPQSPQCIQR*LLPWLEPHSSR
Trigger: GCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTGCGGAGGTGGATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp GTCTCCCTGAAGGGGCTGTCAGTGCCACTCACATCATaGTGGTCACGGCTCAGGACCACTGGTGCCTTGATC +
Preference number: 6 (lower is better)
Translates to: VSLKGLSVPLTS*WSRLRTTGALI
Trigger: GATCAAGGCACCAGTGGTCCTGAGCCGTGACCACCATGATGTGAGTGGCACTGACAGCCCCTTCAGGGAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp AGGGCCTGCTGTAGCACTTGTTCATCTGCCACCTCATaGGGAAGCGTCACCACCAGGCCACTGTTCTCCTGC +
Preference number: 6 (lower is better)
Translates to: RACCSTCSSATS*GSVTTRPLFSC
Trigger: GCAGGAGAACAGTGGCCTGGTGGTGACGCTTCCCCATGAGGTGGCAGATGAACAAGTGCTACAGCAGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 90 bp CTCCGCAATCACCCCAATGCATCCAACGATGGCTGCTGCCTTGGCTaGAGCCCCACTCATCCCGCCAAGCCCAGAGGTGACAAAGACCTT +
Preference number: 6 (lower is better)
Translates to: LRNHPNASNDGCCLG*SPTHPAKPRGDKDL
Trigger: AAGGTCTTTGTCACCTCTGGGCTTGGCGGGATGAGTGGGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTGCGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 90 bp GACAGGATGTCTGGTCTGACCCGAGGTCCACCAAGAGTTCCCCCGTaGTGTCCAGTTCATGGACAAGGCGCTCCCAAAGATCCACCACGT +
Preference number: 6 (lower is better)
Translates to: DRMSGLTRGPPRVPP*CPVHGQGAPKDPPR
Trigger: ACGTGGTGGATCTTTGGGAGCGCCTTGTCCATGAACTGGACACAACGGGGGAACTCTTGGTGGACCTCGGGTCAGACCAGACATCCTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp TCAGGCACTGAATGGCCCAAGTCATGCTCTCTCCCCTaGTTCCAGTGCTCAGGGTCAAGTGTTCTGGGTCCC +
Preference number: 6 (lower is better)
Translates to: SGTEWPKSCSLP*FQCSGSSVLGP
Trigger: GGGACCCAGAACACTTGACCCTGAGCACTGGAAGCAGGGGAGAGAGCATGACTTGGGCCATTCAGTGCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS CCA 72 bp CACTTGCCCGTTGCCTCCGTAGGTCACCAGCTCCTGTaGAAACTGGGCCACAGCAGGGTCCAAGTTGTTCAT +
Preference number: 6 (lower is better)
Translates to: HLPVASVGHQLL*KLGHSRVQVVH
Trigger: ATGAACAACTTGGACCCTGCTGTGGCCCAGTTTCCACAGGAGCTGGTGACCTACGGAGGCAACGGGCAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp TGGTTAATGGCCACAGCAATGGCCACACGGCCTTTCTaGTCTGAGTACAGGATCCTTGCCTGGGAGCCCACC +
Preference number: 6 (lower is better)
Translates to: WLMATAMATRPF*SEYRILAWEPT
Trigger: GGTGGGCTCCCAGGCAAGGATCCTGTACTCAGACCAGAAAGGCCGTGTGGCCATTGCTGTGGCCATTAACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp ACCACTGGTGCCTTGATCTTCCCACTGGCGATGGCCTaGTTAATGGCCACAGCAATGGCCACACGGCCTTTC +
Preference number: 6 (lower is better)
Translates to: TTGALIFPLAMA*LMATAMATRPF
Trigger: GAAAGGCCGTGTGGCCATTGCTGTGGCCATTAACCAGGCCATCGCCAGTGGGAAGATCAAGGCACCAGTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp AGCCTACACCCCCTCCATTGTGAAGTGCAACCCAGGTaGCACCACGACAGGCATCTCCCACGAAGTTCTGCA +
Preference number: 6 (lower is better)
Translates to: SLHPLHCEVQPR*HHDRHLPRSSA
Trigger: TGCAGAACTTCGTGGGAGATGCCTGTCGTGGTGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGTAGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp TTGATGACTTCACCCCAGCCTACACCCCCTCCATTGTaGAGTGCAACCCAGGTGGCACCACGACAGGCATCT +
Preference number: 6 (lower is better)
Translates to: LMTSPQPTPPPL*SATQVAPRQAS
Trigger: AGATGCCTGTCGTGGTGCCACCTGGGTTGCACTTCACAATGGAGGGGGTGTAGGCTGGGGTGAAGTCATCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp CCACCAGGCCACTGTTCTCCTGCATTGTCTGGCAGATaGTCTCATAGGCCTTGGGGTTTCCAGACCAGCAGC +
Preference number: 6 (lower is better)
Translates to: PPGHCSPALSGR*SHRPWGFQTSS
Trigger: GCTGCTGGTCTGGAAACCCCAAGGCCTATGAGATCATCTGCCAGACAATGCAGGAGAACAGTGGCCTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp CAAGTGCAGCTTTATCCACCTCCGCAATCACCCCAATaGATCCAACGATGGCTGCTGCCTTGGCTTGAGCCC +
Preference number: 6 (lower is better)
Translates to: QVQLYPPPQSPQ*IQRWLLPWLEP
Trigger: GGGCTCAAGCCAAGGCAGCAGCCATCGTTGGATGCATTGGGGTGATTGCGGAGGTGGATAAAGCTGCACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp GAATGGCCCAAGTCATGCTCTCTCCCCTGCTTCCAGTaGTCAGGGTCAAGTGTTCTGGGTCCCATACAGCCA +
Preference number: 6 (lower is better)
Translates to: EWPKSCSLPCFQ*SGSSVLGPIQP
Trigger: TGGCTGTATGGGACCCAGAACACTTGACCCTGAGCACTGGAAGCAGGGGAGAGAGCATGACTTGGGCCATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS CCA 72 bp AGGTCCACCAAGAGTTCCCCCGTTGTGTCCAGTTCATaGACAAGGCGCTCCCAAAGATCCACCACGTTGCCA +
Preference number: 6 (lower is better)
Translates to: RSTKSSPVVSSS*TRRSQRSTTLP
Trigger: TGGCAACGTGGTGGATCTTTGGGAGCGCCTTGTCCATGAACTGGACACAACGGGGGAACTCTTGGTGGACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp CTCTCCCCTGCTTCCAGTGCTCAGGGTCAAGTGTTCTaGGTCCCATACAGCCAAACCGTACCTGAGTCTTGC +
Preference number: 6 (lower is better)
Translates to: LSPASSAQGQVF*VPYSQTVPESC
Trigger: GCAAGACTCAGGTACGGTTTGGCTGTATGGGACCCAGAACACTTGACCCTGAGCACTGGAAGCAGGGGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS CAA 72 bp TCTGGTCTGACCCGAGGTCCACCAAGAGTTCCCCCGTaGTGTCCAGTTCATGGACAAGGCGCTCCCAAAGAT +
Preference number: 6 (lower is better)
Translates to: SGLTRGPPRVPP*CPVHGQGAPKD
Trigger: ATCTTTGGGAGCGCCTTGTCCATGAACTGGACACAACGGGGGAACTCTTGGTGGACCTCGGGTCAGACCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 72 bp TTGGGGTTTCCAGACCAGCAGCGTCGTGCCACACCATaGGAGACATCCCAGCTGAGCATCATCCTGGCTTTC +
Preference number: 6 (lower is better)
Translates to: LGFPDQQRRATP*ETSQLSIILAF
Trigger: GAAAGCCAGGATGATGCTCAGCTGGGATGTCTCCAATGGTGTGGCACGACGCTGCTGGTCTGGAAACCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 90 bp TGCAATGCAGCGGTCCAAGCTGTCTGTCACCTCCATCAGCCAGCCTaGCCGGTGGCGTTTTACAAGTGCAGCTTTATCCACCTCCGCAAT +
Preference number: 6 (lower is better)
Translates to: CNAAVQAVCHLHQPA*PVAFYKCSFIHLRN
Trigger: ATTGCGGAGGTGGATAAAGCTGCACTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGAGGTGACAGACAGCTTGGACCGCTGCATTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp TGGCTTTCTCCAGTACAGATGTGGCCAGATGATCAGTaGCAGCCAGGTCCTGGGGGTCCCCTGATGTGCATA +
Preference number: 6 (lower is better)
Translates to: WLSPVQMWPDDQ*QPGPGGPLMCI
Trigger: TATGCACATCAGGGGACCCCCAGGACCTGGCTGTCACTGATCATCTGGCCACATCTGTACTGGAGAAAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp TCAGCAATGGCTTTCTCCAGTACAGATGTGGCCAGATaGTCAGTGACAGCCAGGTCCTGGGGGTCCCCTGAT +
Preference number: 6 (lower is better)
Translates to: SAMAFSSTDVAR*SVTARSWGSPD
Trigger: ATCAGGGGACCCCCAGGACCTGGCTGTCACTGATCATCTGGCCACATCTGTACTGGAGAAAGCCATTGCTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp CTCCATCAGCCAGCCTTGCCGGTGGCGTTTTACAAGTaGAGCTTTATCCACCTCCGCAATCACCCCAATGCA +
Preference number: 6 (lower is better)
Translates to: LHQPALPVAFYK*SFIHLRNHPNA
Trigger: TGCATTGGGGTGATTGCGGAGGTGGATAAAGCTGCACTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp AACTTCTCTTGGGCCAACCTGTTGATGGCTGCGACATaGCTCCTCAGGCTTTCCTGCACCAGGTGCTTGAAG +
Preference number: 6 (lower is better)
Translates to: NFSWANLLMAAT*LLRLSCTRCLK
Trigger: CTTCAAGCACCTGGTGCAGGAAAGCCTGAGGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGAGAAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp AAGCTGTCTGTCACCTCCATCAGCCAGCCTTGCCGGTaGCGTTTTACAAGTGCAGCTTTATCCACCTCCGCA +
Preference number: 6 (lower is better)
Translates to: KLSVTSISQPCR*RFTSAALSTSA
Trigger: TGCGGAGGTGGATAAAGCTGCACTTGTAAAACGCCACCGGCAAGGCTGGCTGATGGAGGTGACAGACAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 72 bp AGCTCCTGTGGAAACTGGGCCACAGCAGGGTCCAAGTaGTTCATGATCATGTGCATGATGGCTGCAGCTGCC +
Preference number: 6 (lower is better)
Translates to: SSCGNWATAGSK*FMIMCMMAAAA
Trigger: GGCAGCTGCAGCCATCATGCACATGATCATGAACAACTTGGACCCTGCTGTGGCCCAGTTTCCACAGGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp AGTCCCAGAAGAAGAACTTCTCTTGGGCCAACCTGTTaGTGGCTGCGACATGCCTCCTCAGGCTTTCCTGCA +
Preference number: 6 (lower is better)
Translates to: SPRRRTSLGPTC*WLRHASSGFPA
Trigger: TGCAGGAAAGCCTGAGGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTTCTGGGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp TTCTGGGTCCCATACAGCCAAACCGTACCTGAGTCTTaGAATGCAGCGGTCCAAGCTGTCTGTCACCTCCAT +
Preference number: 6 (lower is better)
Translates to: FWVPYSQTVPES*NAAVQAVCHLH
Trigger: ATGGAGGTGACAGACAGCTTGGACCGCTGCATTGCAAGACTCAGGTACGGTTTGGCTGTATGGGACCCAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS GCA 72 bp TGTGGTCAAACATCAGGCACTGAATGGCCCAAGTCATaGTCTCTCCCCTGCTTCCAGTGCTCAGGGTCAAGT +
Preference number: 6 (lower is better)
Translates to: CGQTSGTEWPKS*SLPCFQCSGSS
Trigger: ACTTGACCCTGAGCACTGGAAGCAGGGGAGAGAGCATGACTTGGGCCATTCAGTGCCTGATGTTTGACCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS CCA 72 bp CATGTGCATGATGGCTGCAGCTGCCCGTGTCCGGCATaGGTACTGATCAATTGGGTAGGCTCTCATCTCAAT +
Preference number: 6 (lower is better)
Translates to: HVHDGCSCPCPA*VLINWVGSHLN
Trigger: ATTGAGATGAGAGCCTACCCAATTGATCAGTACCCATGCCGGACACGGGCAGCTGCAGCCATCATGCACATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp TCAAGTGTTCTGGGTCCCATACAGCCAAACCGTACCTaGGTCTTGCAATGCAGCGGTCCAAGCTGTCTGTCA +
Preference number: 6 (lower is better)
Translates to: SSVLGPIQPNRT*VLQCSGPSCLS
Trigger: TGACAGACAGCTTGGACCGCTGCATTGCAAGACTCAGGTACGGTTTGGCTGTATGGGACCCAGAACACTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS GCA 72 bp AGGGTCCAAGTTGTTCATGATCATGTGCATGATGGCTaGAGCTGCCCGTGTCCGGCATGGGTACTGATCAAT +
Preference number: 6 (lower is better)
Translates to: RVQVVHDHVHDG*SCPCPAWVLIN
Trigger: ATTGATCAGTACCCATGCCGGACACGGGCAGCTGCAGCCATCATGCACATGATCATGAACAACTTGGACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp ATGGTAGCCGAGGCTGAGAACCTCCTTCTTTTTCCTTaGTTCCCTGAGTCTTGCAATGCAGCGGTCCAAGCT +
Preference number: 6 (lower is better)
Translates to: MVAEAENLLLFP*FPESCNAAVQA
Trigger: AGCTTGGACCGCTGCATTGCAAGACTCAGGGAAGCAAGGAAAAAGAAGGAGGTTCTCAGCCTCGGCTACCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000046128.12
CDS CCA 72 bp GCTGGACATAGGAGGGGTAGCGGAACTCCATCTTGTTaGCTCCTTTCTTCTCTACATCTGCTCCTGCTCTCT +
Preference number: 6 (lower is better)
Translates to: AGHRRGSGTPSC*LLSSLHLLLLS
Trigger: AGAGAGCAGGAGCAGATGTAGAGAAGAAAGGAGCCAACAAGATGGAGTTCCGCTACCCCTCCTATGTCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CAA 90 bp CTCCAAGAGGAAGGCATTACCATAGTCCCAGAAGAAGAACTTCTCTaGGGCCAACCTGTTGATGGCTGCGACATGCCTCCTCAGGCTTTC +
Preference number: 6 (lower is better)
Translates to: LQEEGITIVPEEELL*GQPVDGCDMPPQAF
Trigger: GAAAGCCTGAGGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTTCTGGGACTATGGTAATGCCTTCCTCTTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS TCA 72 bp TTTTTCCTTGCTTCCCTGTGGTCAAACATCAGGCACTaGATGGCCCAAGTCATGCTCTCTCCCCTGCTTCCA +
Preference number: 6 (lower is better)
Translates to: FFLASLWSNIRH*MAQVMLSPLLP
Trigger: TGGAAGCAGGGGAGAGAGCATGACTTGGGCCATTCAGTGCCTGATGTTTGACCACAGGGAAGCAAGGAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS GCA 72 bp CAAGTTGTTCATGATCATGTGCATGATGGCTGCAGCTaGCCGTGTCCGGCATGGGTACTGATCAATTGGGTA +
Preference number: 6 (lower is better)
Translates to: QVVHDHVHDGCS*PCPAWVLINWV
Trigger: TACCCAATTGATCAGTACCCATGCCGGACACGGGCAGCTGCAGCCATCATGCACATGATCATGAACAACTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp ACAGGCATCTCCCACGAAGTTCTGCACGGCCATGTCTaGGCAGAAGGCAGAACCGTCATAAATATTCGAAGT +
Preference number: 6 (lower is better)
Translates to: TGISHEVLHGHV*AEGRTVINIRS
Trigger: ACTTCGAATATTTATGACGGTTCTGCCTTCTGCGCAGACATGGCCGTGCAGAACTTCGTGGGAGATGCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp ATGGTAGCCGAGGCTGAGAACCTCCTTCTTTTTCCTTaGTTCCCTGTGGTCAAACATCAGGCACTGAATGGC +
Preference number: 6 (lower is better)
Translates to: MVAEAENLLLFP*FPVVKHQALNG
Trigger: GCCATTCAGTGCCTGATGTTTGACCACAGGGAAGCAAGGAAAAAGAAGGAGGTTCTCAGCCTCGGCTACCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164761.6
CDS CAA 72 bp GAAGGCATTACCATAGTCCCAGAAGAAGAACTTCTCTaGGGCCAACCTGTTGATGGCTGCGACATGCCTCCT +
Preference number: 6 (lower is better)
Translates to: EGITIVPEEELL*GQPVDGCDMPP
Trigger: AGGAGGCATGTCGCAGCCATCAACAGGTTGGCCCAAGAGAAGTTCTTCTTCTGGGACTATGGTAATGCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS GCA 72 bp ATGGGTACTGATCAATTGGGTAGGCTCTCATCTCAATaGTGGGGCAGAACCGGTACATGTAGATGTGTCCAA +
Preference number: 6 (lower is better)
Translates to: MGTDQLGRLSSQ*WGRTGTCRCVQ
Trigger: TTGGACACATCTACATGTACCGGTTCTGCCCCAGCATTGAGATGAGAGCCTACCCAATTGATCAGTACCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp GGTACTGATCAATTGGGTAGGCTCTCATCTCAATGCTaGGGCAGAACCGGTACATGTAGATGTGTCCAAACT +
Preference number: 6 (lower is better)
Translates to: GTDQLGRLSSQC*GRTGTCRCVQT
Trigger: AGTTTGGACACATCTACATGTACCGGTTCTGCCCCAGCATTGAGATGAGAGCCTACCCAATTGATCAGTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6
CDS CCA 72 bp ACTGTAGCTTCACAGATGCCTTCACTCCATCAGCAATaGCTTTCTCCAGTACAGATGTGGCCAGATGATCAG +
Preference number: 6 (lower is better)
Translates to: TVASQMPSLHQQ*LSPVQMWPDDQ
Trigger: CTGATCATCTGGCCACATCTGTACTGGAGAAAGCCATTGCTGATGGAGTGAAGGCATCTGTGAAGCTACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046128.12
ENSMUST00000164761.6